Pregenerated sensors for TNP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043050Ensembl transcript IDs: ENSMUST00000051297.9
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CATGTTCCTGTGACATCATCCCAACAGTCCCCTAGTGATGGCTATCTCATTTTGAGAGCCCGCGTGGCCTaGCTGGCTGCAGCTCCGGCA | + |
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Preference number: 4 (lower is better) Translates to: HVPVTSSQQSPSDGYLILRARVA*LAAAPA Trigger: TGCCGGAGCTGCAGCCAGGCAGGCCACGCGGGCTCT...CAAAATGAGATAGCCATCACTAGGGGACTGTTGGGATGATGTCACAGGAACATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR CCA 90 bp | CTAGTGATGGCTATCTCATTTTGGGATCAAATGGACACAGGAACATCCTGGAGTCCCGCGTGGCCTGCCTaGCTGCAGCTCCGGCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LVMAISFWDQMDTGTSWSPAWPA*LQLRQW Trigger: CCACTGCCGGAGCTGCAGCCAGGCAGGCCACGCGGG...ACTCCAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR GCA 90 bp | AGTGATGGCTATCTCATTTTGGGATCAAATGGACACAGGAACATCCTGGAGTGCACGGATGGCTTGGGGTaGTTCATGGGCGGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SDGYLILGSNGHRNILECTDGLG*FMGGPG Trigger: CCCTGGCCCGCCCATGAAGCACCCCAAGCCATCCGT...GCACTCCAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR CCA 90 bp | CTAGTGATGGCTATCTCATTTTGGGATCAAATGGACACAGGAACATCCTGGAGTGAGCTAGAGCCCGCGTaGCCTGCCTGGCTGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LVMAISFWDQMDTGTSWSELEPA*PAWLQL Trigger: GAGCTGCAGCCAGGCAGGCCACGCGGGCTCTAGCTC...ACTCCAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR CCA 90 bp | AGTGATGGCTATCTCATTTTGGGATCAAATGGACACAGGAACATCCTGGAGTGCAGGTCTTCCTGTTCTTaGGGCAGCTCCCGCGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SDGYLILGSNGHRNILECRSSCS*GSSRGG Trigger: GCCACCGCGGGAGCTGCCCCAAGAACAGGAAGACCT...GCACTCCAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR CCA 90 bp | AGTGATGGCTATCTCATTTTGGGATCAAATGGACACAGGAACATCCTGGAGTGCGGGGGTGGGGATGAGTaGTGGGAAGGCTCTGCATCT | + |
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Preference number: 4 (lower is better) Translates to: SDGYLILGSNGHRNILECGGGDE*WEGSAS Trigger: AGATGCAGAGCCTTCCCACCACTCATCCCCACCCCC...GCACTCCAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR CCA 90 bp | AGTGATGGCTATCTCATTTTGGGATCAAATGGACACAGGAACATCCTGGAGTGCGGTGGGGATGAGTGGTaGGAAGGCTCTGCATCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SDGYLILGSNGHRNILECGGDEW*EGSASW Trigger: CCAAGATGCAGAGCCTTCCCACCACTCATCCCCACC...GCACTCCAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| 3UTR CAA 72 bp | TCATCCCAACAGTCCCCTAGTGATGGCTATCTCATTTaGGGATCAAATGGACACAGGAACATCCTGGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: SSQQSPSDGYLI*GSNGHRNILEC Trigger: GCACTCCAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACTAGGGGACTGTTGGGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR GCA 90 bp | ACAAGCTTTAATCCATGTTGCATAGAAATTGCTGCAGTGACATGTTCCTGTGACAGTGGTGGCTGCAGGTaGACTGATTGCACTGGTTAC | + |
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Preference number: 4 (lower is better) Translates to: TSFNPCCIEIAAVTCSCDSGGCR*TDCTGY Trigger: GTAACCAGTGCAATCAGTGCACCTGCAGCCACCACT...GTCACAGGAACATGTCACTGCAGCAATTTCTATGCAACATGGATTAAAGCTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS CCA 90 bp | TGCTTCATGGGCGGGCCAGGGCTGGGGCTGGAGCTAGAGCCCGCGTaGCCTGCCTGGCTGCAGCTCCGGCAGTGGTGGCTGCAGGTGCAC | + |
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Preference number: 5 (lower is better) Translates to: CFMGGPGLGLELEPA*PAWLQLRQWWLQVH Trigger: GTGCACCTGCAGCCACCACTGCCGGAGCTGCAGCCAGGCAGGCCACGCGGGCTCTAGCTCCAGCCCCAGCCCTGGCCCGCCCATGAAGCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS GCA 90 bp | CATGGGCGGGCCAGGGCTGGGGCTGGAGCTAGAGCCCGCGTGGCCTaGCTGGCTGCAGCTCCGGCAGTGGTGGCTGCAGGTGCACTGATT | + |
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Preference number: 5 (lower is better) Translates to: HGRARAGAGARARVA*LAAAPAVVAAGALI Trigger: AATCAGTGCACCTGCAGCCACCACTGCCGGAGCTGCAGCCAGGCAGGCCACGCGGGCTCTAGCTCCAGCCCCAGCCCTGGCCCGCCCATG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS GCA 90 bp | CTGCCTGGCTGCAGCTCCGGCAGTGGTGGCTGCAGGTGCACTGATTaGACTGGTTACTGGTGTGACTTTGAGGCCGCGAGGAGCTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: LPGCSSGSGGCRCTD*TGYWCDFEAARSCG Trigger: CCCACAGCTCCTCGCGGCCTCAAAGTCACACCAGTAACCAGTGCAATCAGTGCACCTGCAGCCACCACTGCCGGAGCTGCAGCCAGGCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS CCA 90 bp | AGCTCCGGCAGTGGTGGCTGCAGGTGCACTGATTGCACTGGTTACTaGTGTGACTTTGAGGCCGCGAGGAGCTGTGGGGGTGGGGATGAG | + |
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Preference number: 5 (lower is better) Translates to: SSGSGGCRCTDCTGY*CDFEAARSCGGGDE Trigger: CTCATCCCCACCCCCACAGCTCCTCGCGGCCTCAAAGTCACACCAGTAACCAGTGCAATCAGTGCACCTGCAGCCACCACTGCCGGAGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS CCA 90 bp | ACTTTCCCTTCAAAGGTCTTCCTGTTCTTGGGGCAGCTCCCGCGGTaGCTGGGTCTTGCAGGTGAGTGTCGAGAGTGCACGGATGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: TFPSKVFLFLGQLPR*LGLAGECRECTDGL Trigger: CAAGCCATCCGTGCACTCTCGACACTCACCTGCAAGACCCAGCCACCGCGGGAGCTGCCCCAAGAACAGGAAGACCTTTGAAGGGAAAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR CAA 90 bp | CATCATCCCAACAGTCCCCTAGTGATGGCTATCTCATTTTGGGATCAAATGGACGAGTGCACGGATGGCTaGGGGTGCTTCATGGGCGGG | + |
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Preference number: 5 (lower is better) Translates to: HHPNSPLVMAISFWDQMDECTDG*GCFMGG Trigger: CCCGCCCATGAAGCACCCCAAGCCATCCGTGCACTC...GTCCATTTGATCCCAAAATGAGATAGCCATCACTAGGGGACTGTTGGGATGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR CAA 90 bp | TCCCCTAGTGATGGCTATCTCATTTTGGGATCAAATGGACACAGGAACATCCTGCGCGGTGGCTGGGTCTaGCAGGTGAGTGTCGAGAGT | + |
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Preference number: 5 (lower is better) Translates to: SPSDGYLILGSNGHRNILRGGWV*QVSVES Trigger: ACTCTCGACACTCACCTGCAAGACCCAGCCACCGCG...CAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACTAGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS-3UTR CAA 90 bp | CCTAGTGATGGCTATCTCATTTTGGGATCAAATGGACACAGGAACATCCTGGAGCTGACGGCCTTTCTCTaGCTCACTTTCCCTTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: PSDGYLILGSNGHRNILELTAFL*LTFPSK Trigger: CTTTGAAGGGAAAGTGAGCAAGAGAAAGGCCGTCAG...CTCCAGGATGTTCCTGTGTCCATTTGATCCCAAAATGAGATAGCCATCACTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS CCA 72 bp | GGGCTGGGGCTGGAGCTAGAGCCCGCGTGGCCTGCCTaGCTGCAGCTCCGGCAGTGGTGGCTGCAGGTGCAC | + |
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Preference number: 6 (lower is better) Translates to: GLGLELEPAWPA*LQLRQWWLQVH Trigger: GTGCACCTGCAGCCACCACTGCCGGAGCTGCAGCCAGGCAGGCCACGCGGGCTCTAGCTCCAGCCCCAGCCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS GCA 72 bp | GCAGGTGAGTGTCGAGAGTGCACGGATGGCTTGGGGTaGTTCATGGGCGGGCCAGGGCTGGGGCTGGAGCTA | + |
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Preference number: 6 (lower is better) Translates to: AGECRECTDGLG*FMGGPGLGLEL Trigger: TAGCTCCAGCCCCAGCCCTGGCCCGCCCATGAAGCACCCCAAGCCATCCGTGCACTCTCGACACTCACCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS CCA 72 bp | AGGTCTTCCTGTTCTTGGGGCAGCTCCCGCGGTGGCTaGGTCTTGCAGGTGAGTGTCGAGAGTGCACGGATG | + |
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Preference number: 6 (lower is better) Translates to: RSSCSWGSSRGG*VLQVSVESARM Trigger: CATCCGTGCACTCTCGACACTCACCTGCAAGACCCAGCCACCGCGGGAGCTGCCCCAAGAACAGGAAGACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS CAA 90 bp | CAAAGGTCTTCCTGTTCTTGGGGCAGCTCCCGCGGTGGCTGGGTCTaGCAGGTGAGTGTCGAGAGTGCACGGATGGCTTGGGGTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: QRSSCSWGSSRGGWV*QVSVESARMAWGAS Trigger: TGAAGCACCCCAAGCCATCCGTGCACTCTCGACACTCACCTGCAAGACCCAGCCACCGCGGGAGCTGCCCCAAGAACAGGAAGACCTTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS GCA 72 bp | TGCAGCTCCGGCAGTGGTGGCTGCAGGTGCACTGATTaGACTGGTTACTGGTGTGACTTTGAGGCCGCGAGG | + |
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Preference number: 6 (lower is better) Translates to: CSSGSGGCRCTD*TGYWCDFEAAR Trigger: CCTCGCGGCCTCAAAGTCACACCAGTAACCAGTGCAATCAGTGCACCTGCAGCCACCACTGCCGGAGCTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS CCA 72 bp | TCAAAGGTCTTCCTGTTCTTGGGGCAGCTCCCGCGGTaGCTGGGTCTTGCAGGTGAGTGTCGAGAGTGCACG | + |
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Preference number: 6 (lower is better) Translates to: SKVFLFLGQLPR*LGLAGECRECT Trigger: CGTGCACTCTCGACACTCACCTGCAAGACCCAGCCACCGCGGGAGCTGCCCCAAGAACAGGAAGACCTTTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS CCA 72 bp | AGTGGTGGCTGCAGGTGCACTGATTGCACTGGTTACTaGTGTGACTTTGAGGCCGCGAGGAGCTGTGGGGGT | + |
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Preference number: 6 (lower is better) Translates to: SGGCRCTDCTGY*CDFEAARSCGG Trigger: ACCCCCACAGCTCCTCGCGGCCTCAAAGTCACACCAGTAACCAGTGCAATCAGTGCACCTGCAGCCACCACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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| CDS TCA 72 bp | TTGTATCTTCGCCCTGAGCTACGCCTCTTAGCTCTGTaGGTCCGTTTCCGCCTCCTGACGGCCTTTCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: LYLRPELRLLAL*VRFRLLTAFLL Trigger: CAAGAGAAAGGCCGTCAGGAGGCGGAAACGGACTCACAGAGCTAAGAGGCGTAGCTCAGGGCGAAGATACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051297.9 |
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