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Pregenerated sensors for TNP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026182

Ensembl transcript IDs: ENSMUST00000027374.7

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACTTCAGATCTCTTTGGCAGTCCCCCTCTGATGTCCTCATGCTCCTaGCCCGTGTTGTTTGAAGACCACCAGGGCAGAGCTCATTGCCGC +
Preference number: 1 (lower is better)
Translates to: TSDLFGSPPLMSSCS*PVLFEDHQGRAHCR
Trigger: GCGGCAATGAGCTCTGCCCTGGTGGTCTTCAAACAACACGGGGCAGGAGCATGAGGACATCAGAGGGGGACTGCCAAAGAGATCTGAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
3UTR CCA 90 bp TTGGGGAGAAACAGCCAACATATACATTCCGAATTTCGTCACGACTaGCATTTACCCACTCTGATAGGATCTTTGGCTTTTGGTCTAACT +
Preference number: 1 (lower is better)
Translates to: LGRNSQHIHSEFRHD*HLPTLIGSLAFGLT
Trigger: AGTTAGACCAAAAGCCAAAGATCCTATCAGAGTGGGTAAATGCCAGTCGTGACGAAATTCGGAATGTATATGTTGGCTGTTTCTCCCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
3UTR CAA 90 bp TCCGAATTTCGTCACGACTGGCATTTACCCACTCTGATAGGATCTTaGGCTTTTGGTCTAACTTCAGATCTCTTTGGCAGTCCCCCTCTG +
Preference number: 2 (lower is better)
Translates to: SEFRHDWHLPTLIGS*AFGLTSDLFGSPPL
Trigger: CAGAGGGGGACTGCCAAAGAGATCTGAAGTTAGACCAAAAGCCAAAGATCCTATCAGAGTGGGTAAATGCCAGTCGTGACGAAATTCGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
3UTR-3UTR CCA 90 bp ACATATACATTCCGAATTTCGTCACGACTGGCATTTACCCACTCTGATAGGATCAACTTCAGATCTCTTTaGCAGTCCCCCTCTGATGTC +
Preference number: 2 (lower is better)
Translates to: TYTFRISSRLAFTHSDRINFRSL*QSPSDV
Trigger: GACATCAGAGGGGGACTGCCAAAGAGATCTGAAGTT...GATCCTATCAGAGTGGGTAAATGCCAGTCGTGACGAAATTCGGAATGTATATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
3UTR GCA 72 bp CTCTTTGGCAGTCCCCCTCTGATGTCCTCATGCTCCTaGCCCGTGTTGTTTGAAGACCACCAGGGCAGAGCT +
Preference number: 3 (lower is better)
Translates to: LFGSPPLMSSCS*PVLFEDHQGRA
Trigger: AGCTCTGCCCTGGTGGTCTTCAAACAACACGGGGCAGGAGCATGAGGACATCAGAGGGGGACTGCCAAAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
3UTR CCA 72 bp CTGGCATTTACCCACTCTGATAGGATCTTTGGCTTTTaGTCTAACTTCAGATCTCTTTGGCAGTCCCCCTCT +
Preference number: 3 (lower is better)
Translates to: LAFTHSDRIFGF*SNFRSLWQSPS
Trigger: AGAGGGGGACTGCCAAAGAGATCTGAAGTTAGACCAAAAGCCAAAGATCCTATCAGAGTGGGTAAATGCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
3UTR CCA 72 bp AACAGCCAACATATACATTCCGAATTTCGTCACGACTaGCATTTACCCACTCTGATAGGATCTTTGGCTTTT +
Preference number: 3 (lower is better)
Translates to: NSQHIHSEFRHD*HLPTLIGSLAF
Trigger: AAAAGCCAAAGATCCTATCAGAGTGGGTAAATGCCAGTCGTGACGAAATTCGGAATGTATATGTTGGCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
3UTR CAA 72 bp AGTCCCCCTCTGATGTCCTCATGCTCCTGCCCCGTGTaGTTTGAAGACCACCAGGGCAGAGCTCATTGCCGC +
Preference number: 4 (lower is better)
Translates to: SPPLMSSCSCPV*FEDHQGRAHCR
Trigger: GCGGCAATGAGCTCTGCCCTGGTGGTCTTCAAACAACACGGGGCAGGAGCATGAGGACATCAGAGGGGGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
CDS-3UTR GCA 90 bp CCTCTGATGTCCTCATGCTCCTGCCCCGTGTTGTTTGAAGACCACCAGGGCAGAGAGGAGCTCGGTTCTTaGCTCTCCTCATGCCATGAG +
Preference number: 4 (lower is better)
Translates to: PLMSSCSCPVLFEDHQGREELGS*LSSCHE
Trigger: CTCATGGCATGAGGAGAGGCAAGAACCGAGCTCCTC...TCTGCCCTGGTGGTCTTCAAACAACACGGGGCAGGAGCATGAGGACATCAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
CDS-3UTR TCA 90 bp TCGTCACGACTGGCATTTACCCACTCTGATAGGATCTTTGGCTTTTGGTCTAACTGCTTCCACCTCTCTTaGCGCCCTTGTGAGGAGCTC +
Preference number: 4 (lower is better)
Translates to: SSRLAFTHSDRIFGFWSNCFHLS*RPCEEL
Trigger: GAGCTCCTCACAAGGGCGTCAAGAGAGGTGGAAGCA...GTTAGACCAAAAGCCAAAGATCCTATCAGAGTGGGTAAATGCCAGTCGTGACGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
CDS-3UTR TCA 90 bp CCAACATATACATTCCGAATTTCGTCACGACTGGCATTTACCCACTCTGATAGGCCTCTCCTCATGCCATaGGTCTTTAGCTTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: PTYTFRISSRLAFTHSDRPLLMP*VFSLRL
Trigger: CAGCCGCAAGCTAAAGACTCATGGCATGAGGAGAGG...CCTATCAGAGTGGGTAAATGCCAGTCGTGACGAAATTCGGAATGTATATGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
CDS-3UTR GCA 90 bp ACCCACTCTGATAGGATCTTTGGCTTTTGGTCTAACTTCAGATCTCTTTGGCAGTCTTGCCTCTCCTCATaGCATGAGTCTTTAGCTTGC +
Preference number: 4 (lower is better)
Translates to: THSDRIFGFWSNFRSLWQSCLSS*HESLAC
Trigger: GCAAGCTAAAGACTCATGGCATGAGGAGAGGCAAGA...CTGCCAAAGAGATCTGAAGTTAGACCAAAAGCCAAAGATCCTATCAGAGTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
3UTR CAA 72 bp CGTCACGACTGGCATTTACCCACTCTGATAGGATCTTaGGCTTTTGGTCTAACTTCAGATCTCTTTGGCAGT +
Preference number: 4 (lower is better)
Translates to: RHDWHLPTLIGS*AFGLTSDLFGS
Trigger: ACTGCCAAAGAGATCTGAAGTTAGACCAAAAGCCAAAGATCCTATCAGAGTGGGTAAATGCCAGTCGTGACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
CDS TCA 90 bp TTTTCAGGACGCTCTTCCGGTATTTTCTCTTGCTTCCACCTCTCTTaGCGCCCTTGTGAGGAGCTCGGTTCTTGCCTCTCCTCATGCCAT +
Preference number: 5 (lower is better)
Translates to: FSGRSSGIFSCFHLS*RPCEELGSCLSSCH
Trigger: ATGGCATGAGGAGAGGCAAGAACCGAGCTCCTCACAAGGGCGTCAAGAGAGGTGGAAGCAAGAGAAAATACCGGAAGAGCGTCCTGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
CDS-3UTR CAA 90 bp CGTCACGACTGGCATTTACCCACTCTGATAGGATCTTTGGCTTTTGGTCTAACTTTCCGGTATTTTCTCTaGCTTCCACCTCTCTTGACG +
Preference number: 5 (lower is better)
Translates to: RHDWHLPTLIGSLAFGLTFRYFL*LPPLLT
Trigger: CGTCAAGAGAGGTGGAAGCAAGAGAAAATACCGGAA...AGTTAGACCAAAAGCCAAAGATCCTATCAGAGTGGGTAAATGCCAGTCGTGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7
CDS TCA 72 bp CGCTCTTCCGGTATTTTCTCTTGCTTCCACCTCTCTTaGCGCCCTTGTGAGGAGCTCGGTTCTTGCCTCTCC +
Preference number: 6 (lower is better)
Translates to: RSSGIFSCFHLS*RPCEELGSCLS
Trigger: GGAGAGGCAAGAACCGAGCTCCTCACAAGGGCGTCAAGAGAGGTGGAAGCAAGAGAAAATACCGGAAGAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027374.7