RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNNT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026414

Ensembl transcript IDs: ENSMUST00000027671.12, ENSMUST00000112085.9, ENSMUST00000112086.3, ENSMUST00000112087.9, ENSMUST00000178204.8, ENSMUST00000178854.8, ENSMUST00000179863.8, ENSMUST00000188028.7, ENSMUST00000189355.7, ENSMUST00000189732.7, ENSMUST00000189826.7, ENSMUST00000190451.7

Found 288 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTaGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGAC +
Preference number: 1 (lower is better)
Translates to: YPNRSLHWVPRRTQS*DARGKDTSRGHSFD
Trigger: GTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
3UTR GCA 90 bp CTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCTGCATTGGGTaGCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAA +
Preference number: 1 (lower is better)
Translates to: LAKPAPTIQTGVCIG*QGGPRAGMHGARTQ
Trigger: TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
3UTR-3UTR GCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTGACCCAGAGCTGGGATaGACGGGGCAAGGACACAAG +
Preference number: 2 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTDPELG*TGQGHK
Trigger: CTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTC...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
3UTR-3UTR GCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCGACCCAGAGCTGGGATaGACGGGGCAAGGACACAAG +
Preference number: 2 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFDPELG*TGQGHK
Trigger: CTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTC...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
3UTR-3UTR GCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGACCCAGAGCTGGGATaGACGGGGCAAGGACACAAG +
Preference number: 2 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGDPELG*TGQGHK
Trigger: CTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTC...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
3UTR CCA 72 bp AGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTaGGATGCACGGGGCAAGGACACAAGCAGGGGGCAC +
Preference number: 3 (lower is better)
Translates to: RSLHWVPRRTQS*DARGKDTSRGH
Trigger: GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
3UTR-3UTR CAA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCAAACAGGAGTCTGCATaGGGTGCCAAGGAGGACCCA +
Preference number: 3 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFKQESA*GAKEDP
Trigger: TGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTT...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACTTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHLRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSLRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCCTGCTCGGCCCGCTCTaGCCGACGCTTTTCGATCCT +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGLLGPL*PTLFDP
Trigger: AGGATCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAG...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACTGCTCGGCCCGCTCTaGCCGACGCTTTTCGATCCT +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTLLGPL*PTLFDP
Trigger: AGGATCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAG...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGLRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCATTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGALRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGLRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARSLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQSLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCCCTTCTCCCGCTCATTaGGAATACGCTGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSPSPAH*EYAAAR
Trigger: CCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGG...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSSARRF*LSFSRS
Trigger: TGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACCTCCATCGGGGATCTTaGGTGGCACCAAGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHLHRGS*VAPSWA
Trigger: TGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAG...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCCTCCATCGGGGATCTTaGGTGGCACCAAGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSLHRGS*VAPSWA
Trigger: TGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAG...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACCATTCAGGTGGTCGATaGCCAGCGCCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHHSGGR*PAPSSS
Trigger: AGAGGAGGAAGGCGCTGGCCATCGACCACCTGAATG...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCCATTCAGGTGGTCGATaGCCAGCGCCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSHSGGR*PAPSSS
Trigger: AGAGGAGGAAGGCGCTGGCCATCGACCACCTGAATG...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACTCAGCCTCCAGGTTGTaGATACTCTGCCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHSASRL*ILCHSS
Trigger: GGAGCTGTGGCAGAGTATTCACAACCTGGAGGCTGA...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCATCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGASLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGSLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACATCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTSLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARSARRF*LSFSRS
Trigger: TGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGTCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQSARRF*LSFSRS
Trigger: TGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTCTTCCTCTTCCGGGTaGTCCTCGTACTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARSSSSG*SSYSST
Trigger: GGTGGAGGAGTACGAGGAGCACCCGGAAGAGGAAGA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112086.3
CDS-3UTR GCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTCCACTGCCTCCTCTTaGTCTGGAGAGGTCCTCTCT +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSSTASS*SGEVLS
Trigger: AGAGAGGACCTCTCCAGAGCAAGAGGAGGCAGTGGA...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112085.9
CDS-3UTR CCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGCTCCATCGGGGATCTTaGGTGGCACCAAGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARLHRGS*VAPSWA
Trigger: TGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAG...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGCATTCAGGTGGTCGATaGCCAGCGCCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARHSGGR*PAPSSS
Trigger: AGAGGAGGAAGGCGCTGGCCATCGACCACCTGAATG...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACCTCTTCCGCTCTGTCTaGGCTTGCTTCTGGATGTAC +
Preference number: 4 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHLFRSV*ACFWMY
Trigger: GTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAG...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTCAGCCTCCAGGTTGTaGATACTCTGCCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARSASRL*ILCHSS
Trigger: GGAGCTGTGGCAGAGTATTCACAACCTGGAGGCTGA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTTTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTLRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACCTTCTCCCGCTCATTaGGAATACGCTGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTPSPAH*EYAAAR
Trigger: CCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGG...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACCTTCTCCCGCTCATTaGGAATACGCTGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGPSPAH*EYAAAR
Trigger: CCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGG...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCACCTTCTCCCGCTCATTaGGAATACGCTGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGAPSPAH*EYAAAR
Trigger: CCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGG...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCCCTTCTCCCGCTCATTaGGAATACGCTGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGPSPAH*EYAAAR
Trigger: CCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGG...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGSARRF*LSFSRS
Trigger: TGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCCAACCTCTTCTACGTTaGCCTCCTCTGTCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSQPLLR*PPLSQP
Trigger: AGGCTGAGACAGAGGAGGCCAACGTAGAAGAGGTTG...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGAGAGCCTGCTGGGCTTaGGTTTGGTGTCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQRACWA*VWCPLL
Trigger: CAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCT...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACTCCATCGGGGATCTTaGGTGGCACCAAGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTLHRGS*VAPSWA
Trigger: TGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAG...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACTCCATCGGGGATCTTaGGTGGCACCAAGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGLHRGS*VAPSWA
Trigger: TGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAG...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGTGGTCTTCATTCAGGTaGTCGATGGCCAGCGCCTTC +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQWSSFR*SMASAF
Trigger: GAAGGCGCTGGCCATCGACCACCTGAATGAAGACCA...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTGGTCTTCATTCAGGTaGTCGATGGCCAGCGCCTTC +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARWSSFR*SMASAF
Trigger: GAAGGCGCTGGCCATCGACCACCTGAATGAAGACCA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTCCTGTTCTCGAAGTaGGCCTCGATCAGAGTCTGT +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSFLFSK*ASIRVC
Trigger: ACAGACTCTGATCGAGGCTCACTTCGAGAACAGGAA...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGCTCTTCCGCTCTGTCTaGGCTTGCTTCTGGATGTAC +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARLFRSV*ACFWMY
Trigger: GTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAG...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTCTTCCGCTCTGTCTaGGCTTGCTTCTGGATGTAC +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQLFRSV*ACFWMY
Trigger: GTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAG...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATCAGCCTCCAGGTTGTaGATACTCTGCCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGSASRL*ILCHSS
Trigger: GGAGCTGTGGCAGAGTATTCACAACCTGGAGGCTGA...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCATCAGCCTCCAGGTTGTaGATACTCTGCCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGASASRL*ILCHSS
Trigger: GGAGCTGTGGCAGAGTATTCACAACCTGGAGGCTGA...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACATCAGCCTCCAGGTTGTaGATACTCTGCCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTSASRL*ILCHSS
Trigger: GGAGCTGTGGCAGAGTATTCACAACCTGGAGGCTGA...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATCCACTGCCTCCTCTTaGTCTTCCTGTTCCTCCTCG +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGSTASS*SSCSSS
Trigger: CGAGGAGGAACAGGAAGAGCAAGAGGAGGCAGTGGA...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027671.12
ENSMUST00000189355.7
CDS-3UTR GCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGCTGCTCGGCCCGCTCTaGCCGACGCTTTTCGATCCT +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELLLGPL*PTLFDP
Trigger: AGGATCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAG...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTSLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQSARRF*LSFSRS
Trigger: TGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGATCGGGGATCTTGGGTaGCACCAAGTTGGGCATGAA +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQIGDLG*HQVGHE
Trigger: TTCATGCCCAACTTGGTGCCACCCAAGATCCCCGAT...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATCGGGGATCTTGGGTaGCACCAAGTTGGGCATGAA +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARIGDLG*HQVGHE
Trigger: TTCATGCCCAACTTGGTGCCACCCAAGATCCCCGAT...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACCTCCATCGGGGATCTTaGGTGGCACCAAGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: SWDARGKDTSRGHSFDENLHRGS*VAPSWA
Trigger: TGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAG...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACACATTCAGGTGGTCGATaGCCAGCGCCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTHSGGR*PAPSSS
Trigger: AGAGGAGGAAGGCGCTGGCCATCGACCACCTGAATG...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACCATTCAGGTGGTCGATaGCCAGCGCCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SWDARGKDTSRGHSFDENHSGGR*PAPSSS
Trigger: AGAGGAGGAAGGCGCTGGCCATCGACCACCTGAATG...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAACATTCAGGTGGTCGATaGCCAGCGCCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQHSGGR*PAPSSS
Trigger: AGAGGAGGAAGGCGCTGGCCATCGACCACCTGAATG...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTGGTCTTCATTCAGGTaGTCGATGGCCAGCGCCTTC +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGWSSFR*SMASAF
Trigger: GAAGGCGCTGGCCATCGACCACCTGAATGAAGACCA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACATGGTCTTCATTCAGGTaGTCGATGGCCAGCGCCTTC +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTWSSFR*SMASAF
Trigger: GAAGGCGCTGGCCATCGACCACCTGAATGAAGACCA...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCGCCTTCTCTCTCAGTTaGTCTTCATTCAGGTGGTCG +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSAFSLS*SSFRWS
Trigger: CGACCACCTGAATGAAGACCAACTGAGAGAGAAGGC...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCACTCTTCCGCTCTGTCTaGGCTTGCTTCTGGATGTAC +
Preference number: 4 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGALFRSV*ACFWMY
Trigger: GTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAG...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACTCTTCCGCTCTGTCTaGGCTTGCTTCTGGATGTAC +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTLFRSV*ACFWMY
Trigger: GTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAG...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATCAGCCTCCAGGTTGTaGATACTCTGCCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQSASRL*ILCHSS
Trigger: GGAGCTGTGGCAGAGTATTCACAACCTGGAGGCTGA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATCCACTGCCTCCTCTTaGTCTTCCTGTTCCTCCTCG +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQSTASS*SSCSSS
Trigger: CGAGGAGGAACAGGAAGAGCAAGAGGAGGCAGTGGA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027671.12
ENSMUST00000189355.7
CDS-3UTR GCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELSLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTTCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTSARRF*LSFSRS
Trigger: TGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACTGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHCLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSCLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCATCCATACCTTCCTTCTaGTCCTCCTCGTACTCCTCC +
Preference number: 4 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGASIPSF*SSSYSS
Trigger: GGAGGAGTACGAGGAGGAGCAGAAGGAAGGTATGGA...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178204.8
CDS-3UTR CCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAACCTCTTCTACGTTaGCCTCCTCTGTCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTQPLLR*PPLSQP
Trigger: AGGCTGAGACAGAGGAGGCCAACGTAGAAGAGGTTG...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCACAACCTCTTCTACGTTaGCCTCCTCTGTCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGAQPLLR*PPLSQP
Trigger: AGGCTGAGACAGAGGAGGCCAACGTAGAAGAGGTTG...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCCAACCTCTTCTACGTTaGCCTCCTCTGTCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGQPLLR*PPLSQP
Trigger: AGGCTGAGACAGAGGAGGCCAACGTAGAAGAGGTTG...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACAGAGCCTGCTGGGCTTaGGTTTGGTGTCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: SWDARGKDTSRGHSFDENRACWA*VWCPLL
Trigger: CAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCT...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACAAGAGCCTGCTGGGCTTaGGTTTGGTGTCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTRACWA*VWCPLL
Trigger: CAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCT...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAAGAGCCTGCTGGGCTTaGGTTTGGTGTCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQRACWA*VWCPLL
Trigger: CAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCT...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACAATCGGGGATCTTGGGTaGCACCAAGTTGGGCATGAA +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTIGDLG*HQVGHE
Trigger: TTCATGCCCAACTTGGTGCCACCCAAGATCCCCGAT...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGAATCGGGGATCTTGGGTaGCACCAAGTTGGGCATGAA +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGIGDLG*HQVGHE
Trigger: TTCATGCCCAACTTGGTGCCACCCAAGATCCCCGAT...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTCTCCATCGGGGATCTTaGGTGGCACCAAGTTGGGCA +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTLHRGS*VAPSWA
Trigger: TGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAG...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTCATTCAGGTGGTCGATaGCCAGCGCCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTHSGGR*PAPSSS
Trigger: AGAGGAGGAAGGCGCTGGCCATCGACCACCTGAATG...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATGGTCTTCATTCAGGTaGTCGATGGCCAGCGCCTTC +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQWSSFR*SMASAF
Trigger: GAAGGCGCTGGCCATCGACCACCTGAATGAAGACCA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACATGGTCTTCATTCAGGTaGTCGATGGCCAGCGCCTTC +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTWSSFR*SMASAF
Trigger: GAAGGCGCTGGCCATCGACCACCTGAATGAAGACCA...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGGCCTTCTCTCTCAGTTaGTCTTCATTCAGGTGGTCG +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQAFSLS*SSFRWS
Trigger: CGACCACCTGAATGAAGACCAACTGAGAGAGAAGGC...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTTCCTGTTCTCGAAGTaGGCCTCGATCAGAGTCTGT +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGFLFSK*ASIRVC
Trigger: ACAGACTCTGATCGAGGCTCACTTCGAGAACAGGAA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACTTTCGATCCTGTCTTTaGGGGAAATCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHFRSCL*GKSAPL
Trigger: AAGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAA...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACACTCTTCCGCTCTGTCTaGGCTTGCTTCTGGATGTAC +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTLFRSV*ACFWMY
Trigger: GTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAG...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTTCAGCCTCCAGGTTGTaGATACTCTGCCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTSASRL*ILCHSS
Trigger: GGAGCTGTGGCAGAGTATTCACAACCTGGAGGCTGA...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGATTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGLRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCTTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVLRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGA +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFLRIRC*SARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGCCTTCTCCCGCTCATTaGGAATACGCTGCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELPSPAH*EYAAAR
Trigger: CCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGG...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGATGTACCCTCCAAAGTaGATCATGTTGGACAGAGCC +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQMYPPK*IMLDRA
Trigger: GGCTCTGTCCAACATGATGCACTTTGGAGGGTACAT...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGTGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQCLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACATCCACTGCCTCCTCTTaGTCTTCCACAGCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTSTASS*SSTASS
Trigger: GGAAGAAGCTGTGGAAGAGCAAGAGGAGGCAGTGGA...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000178854.8
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACCAACCTCTTCTACGTTaGCCTCCTCTGTCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: SWDARGKDTSRGHSFDENQPLLR*PPLSQP
Trigger: AGGCTGAGACAGAGGAGGCCAACGTAGAAGAGGTTG...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTAGAGCCTGCTGGGCTTaGGTTTGGTGTCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTRACWA*VWCPLL
Trigger: CAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCT...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATTCCTGTTCTCGAAGTaGGCCTCGATCAGAGTCTGT +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQFLFSK*ASIRVC
Trigger: ACAGACTCTGATCGAGGCTCACTTCGAGAACAGGAA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTTTCGATCCTGTCTTTaGGGGAAATCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARFRSCL*GKSAPL
Trigger: AAGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFSLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVSLRIR*CSARSA
Trigger: GGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGA...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACAATGTACCCTCCAAAGTaGATCATGTTGGACAGAGCC +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTMYPPK*IMLDRA
Trigger: GGCTCTGTCCAACATGATGCACTTTGGAGGGTACAT...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGCLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCATGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGACLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGGTGTCCTCTACTaGACCTTCTTCAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSFGVLY*TFFSIF
Trigger: AAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAA...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACTTTGGTGTCCTCTACTaGACCTTCTTCAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHFGVLY*TFFSIF
Trigger: AAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAA...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGTGGTCTTCATTCAGGTaGTCGATGGCCAGCGCCTTC +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELWSSFR*SMASAF
Trigger: GAAGGCGCTGGCCATCGACCACCTGAATGAAGACCA...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACGCCTTCTCTCTCAGTTaGTCTTCATTCAGGTGGTCG +
Preference number: 4 (lower is better)
Translates to: SWDARGKDTSRGHSFDENAFSLS*SSFRWS
Trigger: CGACCACCTGAATGAAGACCAACTGAGAGAGAAGGC...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCCTTCTCTCTCAGTTaGTCTTCATTCAGGTGGTCG +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQAFSLS*SSFRWS
Trigger: CGACCACCTGAATGAAGACCAACTGAGAGAGAAGGC...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGCTCTTCCGCTCTGTCTaGGCTTGCTTCTGGATGTAC +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELLFRSV*ACFWMY
Trigger: GTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAG...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCTCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVSARRF*LSFSRS
Trigger: TGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGATCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCA +
Preference number: 4 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGSARRF*LSFSRS
Trigger: TGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACAATGTACCCTCCAAAGTaGATCATGTTGGACAGAGCC +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTMYPPK*IMLDRA
Trigger: GGCTCTGTCCAACATGATGCACTTTGGAGGGTACAT...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAATGTACCCTCCAAAGTaGATCATGTTGGACAGAGCC +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQMYPPK*IMLDRA
Trigger: GGCTCTGTCCAACATGATGCACTTTGGAGGGTACAT...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACATGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTCLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGTTTGGTGTCCTCTACTaGACCTTCTTCAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQFGVLY*TFFSIF
Trigger: AAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAA...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCCATTCAGGTGGTCGATaGCCAGCGCCTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVHSGGR*PAPSSS
Trigger: AGAGGAGGAAGGCGCTGGCCATCGACCACCTGAATG...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCCCTTCCCACGAGTTTTaGAGACTTTCTGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGPSHEF*RLSGCH
Trigger: ATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGG...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACTTTCGATCCTGTCTTTaGGGGAAATCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: SWDARGKDTSRGHSFDENFRSCL*GKSAPL
Trigger: AAGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAA...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACATTTCGATCCTGTCTTTaGGGGAAATCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTFRSCL*GKSAPL
Trigger: AAGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAA...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTCAGCCTCCAGGTTGTaGATACTCTGCCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFSASRL*ILCHSS
Trigger: GGAGCTGTGGCAGAGTATTCACAACCTGGAGGCTGA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGATTTCGTATTTCTGCTaGTTGAACTTTTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQISYFC*LNFSCR
Trigger: CCTGCAGGAAAAGTTCAAGCAGCAGAAATACGAAAT...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTTTGGTGTCCTCTACTaGACCTTCTTCAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGFGVLY*TFFSIF
Trigger: AAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATTTGGTGTCCTCTACTaGACCTTCTTCAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGFGVLY*TFFSIF
Trigger: AAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAA...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCAGAGCCTGCTGGGCTTaGGTTTGGTGTCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVRACWA*VWCPLL
Trigger: CAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCT...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAAGAGCCTGCTGGGCTTaGGTTTGGTGTCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGRACWA*VWCPLL
Trigger: CAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCT...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCAGAGCCTGCTGGGCTTaGGTTTGGTGTCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFRACWA*VWCPLL
Trigger: CAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCT...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTGGTCTTCATTCAGGTaGTCGATGGCCAGCGCCTTC +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFWSSFR*SMASAF
Trigger: GAAGGCGCTGGCCATCGACCACCTGAATGAAGACCA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGCCTTCTCTCTCAGTTaGTCTTCATTCAGGTGGTCG +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELAFSLS*SSFRWS
Trigger: CGACCACCTGAATGAAGACCAACTGAGAGAGAAGGC...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAACCTTCCCACGAGTTTTaGAGACTTTCTGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQPSHEF*RLSGCH
Trigger: ATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGG...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACCCTTCCCACGAGTTTTaGAGACTTTCTGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: SWDARGKDTSRGHSFDENPSHEF*RLSGCH
Trigger: ATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGG...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGATGTACCCTCCAAAGTaGATCATGTTGGACAGAGCC +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELMYPPK*IMLDRA
Trigger: GGCTCTGTCCAACATGATGCACTTTGGAGGGTACAT...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGTGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELCLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGTTGATTTCGTATTTCTaGTGCTTGAACTTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQLISYF*CLNFSC
Trigger: GCAGGAAAAGTTCAAGCAGCAGAAATACGAAATCAA...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTTGATTTCGTATTTCTaGTGCTTGAACTTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARLISYF*CLNFSC
Trigger: GCAGGAAAAGTTCAAGCAGCAGAAATACGAAATCAA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTCCACTGCCTCCTCTTaGTCTTCCACAGCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFSTASS*SSTASS
Trigger: GGAAGAAGCTGTGGAAGAGCAAGAGGAGGCAGTGGA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000178854.8
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATTTGGTGTCCTCTACTaGACCTTCTTCAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQFGVLY*TFFSIF
Trigger: AAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACATTTGGTGTCCTCTACTaGACCTTCTTCAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: AGMHGARTQAGGTALTRTFGVLY*TFFSIF
Trigger: AAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAA...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCATCGGGGATCTTGGGTaGCACCAAGTTGGGCATGAA +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFIGDLG*HQVGHE
Trigger: TTCATGCCCAACTTGGTGCCACCCAAGATCCCCGAT...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAATCGGGGATCTTGGGTaGCACCAAGTTGGGCATGAA +
Preference number: 4 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGIGDLG*HQVGHE
Trigger: TTCATGCCCAACTTGGTGCCACCCAAGATCCCCGAT...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTCCTTCCCACGAGTTTTaGAGACTTTCTGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTPSHEF*RLSGCH
Trigger: ATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGG...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCTTCCTGTTCTCGAAGTaGGCCTCGATCAGAGTCTGT +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVFLFSK*ASIRVC
Trigger: ACAGACTCTGATCGAGGCTCACTTCGAGAACAGGAA...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTTCCTGTTCTCGAAGTaGGCCTCGATCAGAGTCTGT +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFFLFSK*ASIRVC
Trigger: ACAGACTCTGATCGAGGCTCACTTCGAGAACAGGAA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGTTTCGATCCTGTCTTTaGGGGAAATCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELFRSCL*GKSAPL
Trigger: AAGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAA...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACATTTCGTATTTCTGCTaGTTGAACTTTTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: SWDARGKDTSRGHSFDENISYFC*LNFSCR
Trigger: CCTGCAGGAAAAGTTCAAGCAGCAGAAATACGAAAT...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTTGATTTCGTATTTCTaGTGCTTGAACTTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGLISYF*CLNFSC
Trigger: GCAGGAAAAGTTCAAGCAGCAGAAATACGAAATCAA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATTGATTTCGTATTTCTaGTGCTTGAACTTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: ESALGAKEDPELGCTGQGLISYF*CLNFSC
Trigger: GCAGGAAAAGTTCAAGCAGCAGAAATACGAAATCAA...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACATTGATTTCGTATTTCTaGTGCTTGAACTTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTLISYF*CLNFSC
Trigger: GCAGGAAAAGTTCAAGCAGCAGAAATACGAAATCAA...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGCCTTCTCTCTCAGTTaGTCTTCATTCAGGTGGTCG +
Preference number: 4 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGAFSLS*SSFRWS
Trigger: CGACCACCTGAATGAAGACCAACTGAGAGAGAAGGC...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGCCTTCCCACGAGTTTTaGAGACTTTCTGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELPSHEF*RLSGCH
Trigger: ATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGG...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCATGTACCCTCCAAAGTaGATCATGTTGGACAGAGCC +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFMYPPK*IMLDRA
Trigger: GGCTCTGTCCAACATGATGCACTTTGGAGGGTACAT...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCTGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVCLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGATGCTTGAACTTTTCCTaGAGGTCGAACTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGCLNFS*RSNFSA
Trigger: GGCTGAGAAGTTCGACCTGCAGGAAAAGTTCAAGCA...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATTTCGTATTTCTGCTaGTTGAACTTTTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTISYFC*LNFSCR
Trigger: CCTGCAGGAAAAGTTCAAGCAGCAGAAATACGAAAT...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATTGATTTCGTATTTCTaGTGCTTGAACTTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQLISYF*CLNFSC
Trigger: GCAGGAAAAGTTCAAGCAGCAGAAATACGAAATCAA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR TCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGATTTCGATCCTGTCTTTaGGGGAAATCAGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGFRSCL*GKSAPL
Trigger: AAGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAA...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGATTTCGTATTTCTGCTaGTTGAACTTTTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELISYFC*LNFSCR
Trigger: CCTGCAGGAAAAGTTCAAGCAGCAGAAATACGAAAT...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCCCTTCCCACGAGTTTTaGAGACTTTCTGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFPSHEF*RLSGCH
Trigger: ATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGG...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCCCTTCCCACGAGTTTTaGAGACTTTCTGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVPSHEF*RLSGCH
Trigger: ATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGG...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGTTGATTTCGTATTTCTaGTGCTTGAACTTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: LPLSKQESALGAKEDPELLISYF*CLNFSC
Trigger: GCAGGAAAAGTTCAAGCAGCAGAAATACGAAATCAA...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCTTTGGTGTCCTCTACTaGACCTTCTTCAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVFGVLY*TFFSIF
Trigger: AAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAA...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAATTTCGTATTTCTGCTaGTTGAACTTTTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGISYFC*LNFSCR
Trigger: CCTGCAGGAAAAGTTCAAGCAGCAGAAATACGAAAT...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCATTTCGTATTTCTGCTaGTTGAACTTTTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVISYFC*LNFSCR
Trigger: CCTGCAGGAAAAGTTCAAGCAGCAGAAATACGAAAT...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR GCA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTTGATTTCGTATTTCTaGTGCTTGAACTTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFLISYF*CLNFSC
Trigger: GCAGGAAAAGTTCAAGCAGCAGAAATACGAAATCAA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACTCTCCATCGGGGATCTaGGGTGGCACCAAGTTGGGC +
Preference number: 5 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHSPSGI*GGTKLG
Trigger: GCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGA...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACCTCCACTGCCTCCTCTaGCTCTGGAGAGGTCCTCTC +
Preference number: 5 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHLHCLL*LWRGPL
Trigger: GAGAGGACCTCTCCAGAGCAAGAGGAGGCAGTGGAG...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112085.9
CDS GCA 90 bp TCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTTaGTCTTCCTGTTCCTCCTCGTACTCCTCCACCACCTCCTCGGCG +
Preference number: 5 (lower is better)
Translates to: SGSAPPASSSSTASS*SSCSSSYSSTTSSA
Trigger: CGCCGAGGAGGTGGTGGAGGAGTACGAGGAGGAACAGGAAGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027671.12
ENSMUST00000189355.7
ENSMUST00000190451.7
CDS-3UTR CAA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTCTCCATCGGGGATCTaGGGTGGCACCAAGTTGGGC +
Preference number: 5 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARSPSGI*GGTKLG
Trigger: GCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCCTCTGCCACAGCTCCTaGGCCTTCTCTCTCAGTTGG +
Preference number: 5 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSLCHSS*AFSLSW
Trigger: CCAACTGAGAGAGAAGGCCAAGGAGCTGTGGCAGAG...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS GCA 90 bp ACCCTCAGGCTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTaGCTCCTCTTGCTCTTCCTGTTCCTCCTCGTACTCCTCCACCAC +
Preference number: 5 (lower is better)
Translates to: TLRLRFSPTSLLLLH*LLLLFLFLLVLLHH
Trigger: GTGGTGGAGGAGTACGAGGAGGAACAGGAAGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAGCCTGAGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027671.12
ENSMUST00000189355.7
ENSMUST00000190451.7
CDS GCA 90 bp CCCTCTCTTCAGCCAGGCGGTTCTGCCTTTCCTTCTCCCGCTCATTaGGAATACGCTGCTGCTCGGCCCGCTCTGCCCGACGCTTTTCGA +
Preference number: 5 (lower is better)
Translates to: PSLQPGGSAFPSPAH*EYAAARPALPDAFR
Trigger: TCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGAAGAGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS-3UTR CAA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTCCTTCTCCCGCTCATaGCGAATACGCTGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARSFSRS*RIRCCS
Trigger: CGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGTCCTTCTCCCGCTCATaGCGAATACGCTGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQSFSRS*RIRCCS
Trigger: CGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGA...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGCTCTGCCACAGCTCCTaGGCCTTCTCTCTCAGTTGG +
Preference number: 5 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARLCHSS*AFSLSW
Trigger: CCAACTGAGAGAGAAGGCCAAGGAGCTGTGGCAGAG...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCAACGCCCGGTGACTTaGGCCTTCCCACGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQQRPVT*AFPRVL
Trigger: CAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS GCA 90 bp GCCAGGCGGTTCTGCCTTTCCTTCTCCCGCTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCCCGACGCTTTTCGATCCTGTCTTTG +
Preference number: 5 (lower is better)
Translates to: ARRFCLSFSRSLRIR*CSARSARRFSILSL
Trigger: CAAAGACAGGATCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS GCA 90 bp TCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTTaGTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTCTTCCGGGTGC +
Preference number: 5 (lower is better)
Translates to: SGSAPPASSSSTASS*SSSSSSLQSSSSGC
Trigger: GCACCCGGAAGAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112086.3
CDS GCA 90 bp ACCCTCAGGCTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTaGCTCCTCTTGCTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: TLRLRFSPTSLLLLH*LLLLVLLFFTPVFL
Trigger: GAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAGCCTGAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189826.7
CDS-3UTR CAA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACTCTCCATCGGGGATCTaGGGTGGCACCAAGTTGGGC +
Preference number: 5 (lower is better)
Translates to: SWDARGKDTSRGHSFDENSPSGI*GGTKLG
Trigger: GCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGA...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATCTCCATCGGGGATCTaGGGTGGCACCAAGTTGGGC +
Preference number: 5 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQSPSGI*GGTKLG
Trigger: GCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATCCTTCTCCCGCTCATaGCGAATACGCTGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: ESALGAKEDPELGCTGQGSFSRS*RIRCCS
Trigger: CGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGA...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCACTCTGCCACAGCTCCTaGGCCTTCTCTCTCAGTTGG +
Preference number: 5 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGALCHSS*AFSLSW
Trigger: CCAACTGAGAGAGAAGGCCAAGGAGCTGTGGCAGAG...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACTCTGCCACAGCTCCTaGGCCTTCTCTCTCAGTTGG +
Preference number: 5 (lower is better)
Translates to: ESALGAKEDPELGCTGQGLCHSS*AFSLSW
Trigger: CCAACTGAGAGAGAAGGCCAAGGAGCTGTGGCAGAG...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCCTCTGCCACAGCTCCTaGGCCTTCTCTCTCAGTTGG +
Preference number: 5 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGLCHSS*AFSLSW
Trigger: CCAACTGAGAGAGAAGGCCAAGGAGCTGTGGCAGAG...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCACAACGCCCGGTGACTTaGGCCTTCCCACGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGAQRPVT*AFPRVL
Trigger: CAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCCAACGCCCGGTGACTTaGGCCTTCCCACGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGQRPVT*AFPRVL
Trigger: CAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACAACGCCCGGTGACTTaGGCCTTCCCACGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: ESALGAKEDPELGCTGQGQRPVT*AFPRVL
Trigger: CAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS GCA 90 bp AGGCGGTTCTGCCTTTCCTTCTCCCGCTCATTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGACGCTTTTCGATCCTGTCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: RRFCLSFSRSLRIRC*SARSARRFSILSLR
Trigger: CCTCAAAGACAGGATCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGAAAGGCAGAACCGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS GCA 90 bp TCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTTaGTCTGGAGAGGTCCTCTCTCTTAACTCCTCGTACTCCTCCACC +
Preference number: 5 (lower is better)
Translates to: SGSAPPASSSSTASS*SGEVLSLNSSYSST
Trigger: GGTGGAGGAGTACGAGGAGTTAAGAGAGAGGACCTCTCCAGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112085.9
CDS GCA 90 bp TCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTTaGTCTTCCACAGCTTCTTCCTGTTCCTCCTCGTACTCCTCCACC +
Preference number: 5 (lower is better)
Translates to: SGSAPPASSSSTASS*SSTASSCSSSYSST
Trigger: GGTGGAGGAGTACGAGGAGGAACAGGAAGAAGCTGTGGAAGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178854.8
ENSMUST00000189732.7
CDS GCA 90 bp ACCCTCAGGCTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTaGCTCCTCTTGCTCTTCCACAGCTTCTTCCTGTTCCTCCTCGTA +
Preference number: 5 (lower is better)
Translates to: TLRLRFSPTSLLLLH*LLLLFHSFFLFLLV
Trigger: TACGAGGAGGAACAGGAAGAAGCTGTGGAAGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAGCCTGAGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178854.8
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACACTCCACTGCCTCCTCTaGCTCTTCCTGTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: AGMHGARTQAGGTALTRTLHCLL*LFLFLL
Trigger: GAGGAGGAACAGGAAGAGCAAGAGGAGGCAGTGGAG...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027671.12
ENSMUST00000189355.7
CDS-3UTR CAA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTTCTCCATCGGGGATCTaGGGTGGCACCAAGTTGGGC +
Preference number: 5 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTSPSGI*GGTKLG
Trigger: GCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGA...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATCCTTCTCCCGCTCATaGCGAATACGCTGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQSFSRS*RIRCCS
Trigger: CGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACACTCTGCCACAGCTCCTaGGCCTTCTCTCTCAGTTGG +
Preference number: 5 (lower is better)
Translates to: AGMHGARTQAGGTALTRTLCHSS*AFSLSW
Trigger: CCAACTGAGAGAGAAGGCCAAGGAGCTGTGGCAGAG...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACGCCTTCCCACGAGTTTaGGAGACTTTCTGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: PRRTQSWDARGKDTSRGHAFPRV*ETFWLS
Trigger: TGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGC...GTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAACAACGCCCGGTGACTTaGGCCTTCCCACGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQQRPVT*AFPRVL
Trigger: CAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS GCA 90 bp TCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTTaGTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTCTTCCTGTTCC +
Preference number: 5 (lower is better)
Translates to: SGSAPPASSSSTASS*SSSSSSLQSSSSCS
Trigger: GGAACAGGAAGAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112087.9
CDS GCA 90 bp TCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTTaGTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTCTTCCACAGCT +
Preference number: 5 (lower is better)
Translates to: SGSAPPASSSSTASS*SSSSSSLQSSSSTA
Trigger: AGCTGTGGAAGAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189826.7
CDS-3UTR CAA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACAAAGAGCCTGCTGGGCTaGGGTTTGGTGTCCTCTACT +
Preference number: 5 (lower is better)
Translates to: AGMHGARTQAGGTALTRTKSLLG*GLVSST
Trigger: AGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTT...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAAAGAGCCTGCTGGGCTaGGGTTTGGTGTCCTCTACT +
Preference number: 5 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQKSLLG*GLVSST
Trigger: AGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTT...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTCTCTGCCACAGCTCCTaGGCCTTCTCTCTCAGTTGG +
Preference number: 5 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTLCHSS*AFSLSW
Trigger: CCAACTGAGAGAGAAGGCCAAGGAGCTGTGGCAGAG...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: RRTQSWDARGKDTSRGHSSYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...GCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGGCCTTCCCACGAGTTTaGGAGACTTTCTGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARAFPRV*ETFWLS
Trigger: TGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGC...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGGCCTTCCCACGAGTTTaGGAGACTTTCTGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQAFPRV*ETFWLS
Trigger: TGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGC...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS TCA 90 bp CCACTCTCTCTCCATCGGGGATCTTGGGTGGCACCAAGTTGGGCATaGAGAGCCTGCTGGGCTTGGGTTTGGTGTCCTCTACTGGACCTT +
Preference number: 5 (lower is better)
Translates to: PLSLHRGSWVAPSWA*RACWAWVWCPLLDL
Trigger: AAGGTCCAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGAGAGAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS GCA 90 bp TCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTTaGTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTCTTCCATACCT +
Preference number: 5 (lower is better)
Translates to: SGSAPPASSSSTASS*SSSSSSLQSSSSIP
Trigger: AGGTATGGAAGAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178204.8
CDS-3UTR CAA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARSYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGACTTTCTGGTTGTCATaGATCCGGTTTCGCAGAACG +
Preference number: 5 (lower is better)
Translates to: KEDPELGCTGQGHKQGAQTFWLS*IRFRRT
Trigger: CGTTCTGCGAAACCGGATCAATGACAACCAGAAAGT...CTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGAGCCTTCCCACGAGTTTaGGAGACTTTCTGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: ESALGAKEDPELGCTGQGAFPRV*ETFWLS
Trigger: TGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGC...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAGCCTTCCCACGAGTTTaGGAGACTTTCTGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGAAFPRV*ETFWLS
Trigger: TGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGC...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGCAACGCCCGGTGACTTaGGCCTTCCCACGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: LPLSKQESALGAKEDPELQRPVT*AFPRVL
Trigger: CAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTCTCCATCGGGGATCTaGGGTGGCACCAAGTTGGGC +
Preference number: 5 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFSPSGI*GGTKLG
Trigger: GCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGTTTTCGATCCTGTCTTaGAGGGAAATCAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: GVCIGCQGGPRAGMHGARFSILS*REISSS
Trigger: AGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAAA...CCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCACCAAAGTGCATCATGTaGGACAGAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGAPKCIM*DRAFFF
Trigger: GAAGAAGAAGGCTCTGTCCAACATGATGCACTTTGG...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCCCAAAGTGCATCATGTaGGACAGAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGPKCIM*DRAFFF
Trigger: GAAGAAGAAGGCTCTGTCCAACATGATGCACTTTGG...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGATCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: ESALGAKEDPELGCTGQGSYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp ACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCATCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: TGVCIGCQGGPRAGMHGASYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...TGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACATCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTSYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGSYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCACTTTCTGGTTGTCATaGATCCGGTTTCGCAGAACG +
Preference number: 5 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGTFWLS*IRFRRT
Trigger: CGTTCTGCGAAACCGGATCAATGACAACCAGAAAGT...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGAACTTTCTGGTTGTCATaGATCCGGTTTCGCAGAACG +
Preference number: 5 (lower is better)
Translates to: ESALGAKEDPELGCTGQGTFWLS*IRFRRT
Trigger: CGTTCTGCGAAACCGGATCAATGACAACCAGAAAGT...TCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACAGCCTTCCCACGAGTTTaGGAGACTTTCTGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: AGMHGARTQAGGTALTRTAFPRV*ETFWLS
Trigger: TGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGC...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS CCA 90 bp GTGGATGTCATCAAAGTCCACTCTCTCTCCATCGGGGATCTTGGGTaGCACCAAGTTGGGCATGAAGAGCCTGCTGGGCTTGGGTTTGGT +
Preference number: 5 (lower is better)
Translates to: VDVIKVHSLSIGDLG*HQVGHEEPAGLGFG
Trigger: ACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGAGAGAGTGGACTTTGATGACATCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS-3UTR CAA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCCTCCACTGCCTCCTCTaGCTCTTCCTGTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVLHCLL*LFLFLL
Trigger: GAGGAGGAACAGGAAGAGCAAGAGGAGGCAGTGGAG...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027671.12
ENSMUST00000189355.7
CDS-3UTR CAA 90 bp GTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACATTTTCGATCCTGTCTTaGAGGGAAATCAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: VCIGCQGGPRAGMHGARTFSILS*REISSS
Trigger: AGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAAA...TGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCTTTTCGATCCTGTCTTaGAGGGAAATCAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: NRSLHWVPRRTQSWDARGFSILS*REISSS
Trigger: AGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAAA...GCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTCCTTCTCCCGCTCATaGCGAATACGCTGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFSFSRS*RIRCCS
Trigger: CGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGATCCTTCTCCCGCTCATaGCGAATACGCTGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGSFSRS*RIRCCS
Trigger: CGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGA...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAACCAAAGTGCATCATGTaGGACAGAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQPKCIM*DRAFFF
Trigger: GAAGAAGAAGGCTCTGTCCAACATGATGCACTTTGG...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACCCAAAGTGCATCATGTaGGACAGAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: SWDARGKDTSRGHSFDENPKCIM*DRAFFF
Trigger: GAAGAAGAAGGCTCTGTCCAACATGATGCACTTTGG...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQSYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACTCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: SWDARGKDTSRGHSFDENSYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp AGCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACACTTTCTGGTTGTCATaGATCCGGTTTCGCAGAACG +
Preference number: 5 (lower is better)
Translates to: SWDARGKDTSRGHSFDENTFWLS*IRFRRT
Trigger: CGTTCTGCGAAACCGGATCAATGACAACCAGAAAGT...GTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GCTGGGATGCACGGGGCAAGGACACAAGCAGGGGGCACAGCTTTGACGAGAACAACTTTCTGGTTGTCATaGATCCGGTTTCGCAGAACG +
Preference number: 5 (lower is better)
Translates to: AGMHGARTQAGGTALTRTTFWLS*IRFRRT
Trigger: CGTTCTGCGAAACCGGATCAATGACAACCAGAAAGT...TGTTCTCGTCAAAGCTGTGCCCCCTGCTTGTGTCCTTGCCCCGTGCATCCCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTGCCTTCCCACGAGTTTaGGAGACTTTCTGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTAFPRV*ETFWLS
Trigger: TGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGC...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCCAACGCCCGGTGACTTaGGCCTTCCCACGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVQRPVT*AFPRVL
Trigger: CAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCCAACGCCCGGTGACTTaGGCCTTCCCACGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFQRPVT*AFPRVL
Trigger: CAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAAAGAGCCTGCTGGGCTaGGGTTTGGTGTCCTCTACT +
Preference number: 5 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGKSLLG*GLVSST
Trigger: AGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTT...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCATTGGGTGCCAAGGAGGACCCAGAGCTGGGATGCACGGGGCAAGGACACAATTTTCGATCCTGTCTTaGAGGGAAATCAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: CIGCQGGPRAGMHGARTQFSILS*REISSS
Trigger: AGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAAA...TTGTGTCCTTGCCCCGTGCATCCCAGCTCTGGGTCCTCCTTGGCACCCAATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp TGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTTCGTATTTCTGCTGCTaGAACTTTTCCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: CGHRGQAEYWLLAKPAPTSYFCC*NFSCRS
Trigger: CGACCTGCAGGAAAAGTTCAAGCAGCAGAAATACGA...AGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACCCCTATGCCCGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGCCAAAGTGCATCATGTaGGACAGAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: LPLSKQESALGAKEDPELPKCIM*DRAFFF
Trigger: GAAGAAGAAGGCTCTGTCCAACATGATGCACTTTGG...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGACTTTCTGGTTGTCATaGATCCGGTTTCGCAGAACG +
Preference number: 5 (lower is better)
Translates to: LPLSKQESALGAKEDPELTFWLS*IRFRRT
Trigger: CGTTCTGCGAAACCGGATCAATGACAACCAGAAAGT...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CTCCCACTATCCAAACAGGAGTCTGCATTGGGTGCCAAGGAGGACCCAGAGCTGTTTTCGATCCTGTCTTaGAGGGAAATCAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: LPLSKQESALGAKEDPELFSILS*REISSS
Trigger: AGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAAA...CAGCTCTGGGTCCTCCTTGGCACCCAATGCAGACTCCTGTTTGGATAGTGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCGCCTTCCCACGAGTTTaGGAGACTTTCTGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVAFPRV*ETFWLS
Trigger: TGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGC...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGACCAAAGTGCATCATGTaGGACAGAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGPKCIM*DRAFFF
Trigger: GAAGAAGAAGGCTCTGTCCAACATGATGCACTTTGG...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCCCAAAGTGCATCATGTaGGACAGAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFPKCIM*DRAFFF
Trigger: GAAGAAGAAGGCTCTGTCCAACATGATGCACTTTGG...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCACTTTCTGGTTGTCATaGATCCGGTTTCGCAGAACG +
Preference number: 5 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVTFWLS*IRFRRT
Trigger: CGTTCTGCGAAACCGGATCAATGACAACCAGAAAGT...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS TCA 90 bp TTCTTCTCTCTCTCTGTCTGTCTCTTCCCACTCTTCCGCTCTGTCTaGGCTTGCTTCTGGATGTACCCTCCAAAGTGCATCATGTTGGAC +
Preference number: 5 (lower is better)
Translates to: FFSLSVCLFPLFRSV*ACFWMYPPKCIMLD
Trigger: GTCCAACATGATGCACTTTGGAGGGTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAGTGGGAAGAGACAGACAGAGAGAGAGAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS CCA 90 bp TTCTCTCTCTCTGTCTGTCTCTTCCCACTCTTCCGCTCTGTCTTCTaGATGTACCCTCCAAAGTGCATCATGTTGGACAGAGCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: FSLSVCLFPLFRSVF*MYPPKCIMLDRAFF
Trigger: GAAGAAGGCTCTGTCCAACATGATGCACTTTGGAGGGTACATCCAGAAGACAGAGCGGAAGAGTGGGAAGAGACAGACAGAGAGAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000178204.8
ENSMUST00000179863.8
ENSMUST00000188028.7
CDS-3UTR CAA 90 bp GCTTTTTATTGCTGGCATAGTGCGGGCATAGGGGTCAGGCAGAGTACTGGCTTCTTTTCGATCCTGTCTTaGAGGGAAATCAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: AFYCWHSAGIGVRQSTGFFSILS*REISSS
Trigger: AGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAAA...GAAGCCAGTACTCTGCCTGACCCCTATGCCCGCACTATGCCAGCAATAAAAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp CAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGAGTCTTTTCGATCCTGTCTTaGAGGGAAATCAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: QAEYWLLAKPAPTIQTGVFSILS*REISSS
Trigger: AGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAAA...GACTCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS-3UTR CAA 90 bp GGTCAGGCAGAGTACTGGCTTCTAGCTAAGCCAGCTCCCACTATCCAAACAGGATTTTCGATCCTGTCTTaGAGGGAAATCAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: GQAEYWLLAKPAPTIQTGFSILS*REISSS
Trigger: AGAGGAGCTGATTTCCCTCAAAGACAGGATCGAAAA...TCCTGTTTGGATAGTGGGAGCTGGCTTAGCTAGAAGCCAGTACTCTGCCTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS CCA 90 bp CAACGCCCGGTGACTTTGGCCTTCCCACGAGTTTTGGAGACTTTCTaGTTGTCATTGATCCGGTTTCGCAGAACGTTGATTTCGTATTTC +
Preference number: 5 (lower is better)
Translates to: QRPVTLAFPRVLETF*LSLIRFRRTLISYF
Trigger: GAAATACGAAATCAACGTTCTGCGAAACCGGATCAATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGCCAAAGTCACCGGGCGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS CAA 72 bp TCAGCCAGGCGGTTCTGCCTTTCCTTCTCCCGCTCATaGCGAATACGCTGCTGCTCGGCCCGCTCTGCCCGA +
Preference number: 6 (lower is better)
Translates to: SARRFCLSFSRS*RIRCCSARSAR
Trigger: TCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS CAA 90 bp CTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTaGCTCTTCCTGTTCCTCCTCGTACTCCTCCACCACCTCCTCGGC +
Preference number: 6 (lower is better)
Translates to: LRFSPTSLLLLHCLL*LFLFLLVLLHHLLG
Trigger: GCCGAGGAGGTGGTGGAGGAGTACGAGGAGGAACAGGAAGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027671.12
ENSMUST00000189355.7
ENSMUST00000190451.7
CDS CAA 90 bp GCCCTCTCTTCAGCCAGGCGGTTCTGCCTTTCCTTCTCCCGCTCATaGCGAATACGCTGCTGCTCGGCCCGCTCTGCCCGACGCTTTTCG +
Preference number: 6 (lower is better)
Translates to: ALSSARRFCLSFSRS*RIRCCSARSARRFS
Trigger: CGAAAAGCGTCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGAAGAGAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS GCA 72 bp TCCTCACGCCGGGCCCTCTCTTCAGCCAGGCGGTTCTaGCTTTCCTTCTCCCGCTCATTGCGAATACGCTGC +
Preference number: 6 (lower is better)
Translates to: SSRRALSSARRF*LSFSRSLRIRC
Trigger: GCAGCGTATTCGCAATGAGCGGGAGAAGGAAAGGCAGAACCGCCTGGCTGAAGAGAGGGCCCGGCGTGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS CAA 90 bp CTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTaGCTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTCTTCCGGGTG +
Preference number: 6 (lower is better)
Translates to: LRFSPTSLLLLHCLL*LVLLFFTPVFLFRV
Trigger: CACCCGGAAGAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112086.3
CDS GCA 72 bp CTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTaGCTCCTCTTGCTCTTCCTGTTCCTCCTCGTACTC +
Preference number: 6 (lower is better)
Translates to: LRFSPTSLLLLH*LLLLFLFLLVL
Trigger: GAGTACGAGGAGGAACAGGAAGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027671.12
ENSMUST00000189355.7
ENSMUST00000190451.7
CDS GCA 72 bp TGCCTTTCCTTCTCCCGCTCATTGCGAATACGCTGCTaGTCGGCCCGCTCTGCCCGACGCTTTTCGATCCTG +
Preference number: 6 (lower is better)
Translates to: CLSFSRSLRIRC*SARSARRFSIL
Trigger: CAGGATCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGAAAGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS GCA 72 bp CTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTaGCTCCTCTTGCTCGTCCTCCTCTTCTTCACTCCA +
Preference number: 6 (lower is better)
Translates to: LRFSPTSLLLLH*LLLLVLLFFTP
Trigger: TGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189826.7
CDS CAA 90 bp CTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTaGCTCTTCCACAGCTTCTTCCTGTTCCTCCTCGTACTCCTCCAC +
Preference number: 6 (lower is better)
Translates to: LRFSPTSLLLLHCLL*LFHSFFLFLLVLLH
Trigger: GTGGAGGAGTACGAGGAGGAACAGGAAGAAGCTGTGGAAGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178854.8
ENSMUST00000189732.7
CDS CAA 90 bp CTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTaGCTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTCTTCCACAGC +
Preference number: 6 (lower is better)
Translates to: LRFSPTSLLLLHCLL*LVLLFFTPVFLFHS
Trigger: GCTGTGGAAGAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189826.7
CDS GCA 72 bp TTCTGCCTTTCCTTCTCCCGCTCATTGCGAATACGCTaGTGCTCGGCCCGCTCTGCCCGACGCTTTTCGATC +
Preference number: 6 (lower is better)
Translates to: FCLSFSRSLRIR*CSARSARRFSI
Trigger: GATCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGAGCGGGAGAAGGAAAGGCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS CAA 90 bp CTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTaGCTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTCTTCCTGTTC +
Preference number: 6 (lower is better)
Translates to: LRFSPTSLLLLHCLL*LVLLFFTPVFLFLF
Trigger: GAACAGGAAGAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112087.9
CDS CAA 90 bp CTCAGGTTCAGCCCCACCAGCCTCCTCCTCCTCCACTGCCTCCTCTaGCTCGTCCTCCTCTTCTTCACTCCAGTCTTCCTCTTCCATACC +
Preference number: 6 (lower is better)
Translates to: LRFSPTSLLLLHCLL*LVLLFFTPVFLFHT
Trigger: GGTATGGAAGAGGAAGACTGGAGTGAAGAAGAGGAGGACGAGCAAGAGGAGGCAGTGGAGGAGGAGGAGGCTGGTGGGGCTGAACCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178204.8
CDS TCA 72 bp CTCCATCGGGGATCTTGGGTGGCACCAAGTTGGGCATaGAGAGCCTGCTGGGCTTGGGTTTGGTGTCCTCTA +
Preference number: 6 (lower is better)
Translates to: LHRGSWVAPSWA*RACWAWVWCPL
Trigger: TAGAGGACACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS GCA 72 bp CCGCTCATTGCGAATACGCTGCTGCTCGGCCCGCTCTaGCCGACGCTTTTCGATCCTGTCTTTGAGGGAAAT +
Preference number: 6 (lower is better)
Translates to: PLIANTLLLGPL*PTLFDPVFEGN
Trigger: ATTTCCCTCAAAGACAGGATCGAAAAGCGTCGGGCAGAGCGGGCCGAGCAGCAGCGTATTCGCAATGAGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
CDS CAA 72 bp ACTCTCTCTCCATCGGGGATCTTGGGTGGCACCAAGTaGGGCATGAAGAGCCTGCTGGGCTTGGGTTTGGTG +
Preference number: 6 (lower is better)
Translates to: TLSPSGILGGTK*GMKSLLGLGLV
Trigger: CACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGAGAGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 72 bp GGTGGCACCAAGTTGGGCATGAAGAGCCTGCTGGGCTaGGGTTTGGTGTCCTCTACTGGACCTTCTTCAGCA +
Preference number: 6 (lower is better)
Translates to: GGTKLGMKSLLG*GLVSSTGPSSA
Trigger: TGCTGAAGAAGGTCCAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 90 bp GGGATCTTGGGTGGCACCAAGTTGGGCATGAAGAGCCTGCTGGGCTaGGGTTTGGTGTCCTCTACTGGACCTTCTTCAGCATCTTTGGCT +
Preference number: 6 (lower is better)
Translates to: GILGGTKLGMKSLLG*GLVSSTGPSSASLA
Trigger: AGCCAAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 90 bp TCAAAGTCCACTCTCTCTCCATCGGGGATCTTGGGTGGCACCAAGTaGGGCATGAAGAGCCTGCTGGGCTTGGGTTTGGTGTCCTCTACT +
Preference number: 6 (lower is better)
Translates to: SKSTLSPSGILGGTK*GMKSLLGLGLVSST
Trigger: AGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGAGAGAGTGGACTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 90 bp TTCCTGTGGATGTCATCAAAGTCCACTCTCTCTCCATCGGGGATCTaGGGTGGCACCAAGTTGGGCATGAAGAGCCTGCTGGGCTTGGGT +
Preference number: 6 (lower is better)
Translates to: FLWMSSKSTLSPSGI*GGTKLGMKSLLGLG
Trigger: ACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGAGAGAGTGGACTTTGATGACATCCACAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CCA 72 bp ATCAAAGTCCACTCTCTCTCCATCGGGGATCTTGGGTaGCACCAAGTTGGGCATGAAGAGCCTGCTGGGCTT +
Preference number: 6 (lower is better)
Translates to: IKVHSLSIGDLG*HQVGHEEPAGL
Trigger: AAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGAGAGAGTGGACTTTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 72 bp ATGTCATCAAAGTCCACTCTCTCTCCATCGGGGATCTaGGGTGGCACCAAGTTGGGCATGAAGAGCCTGCTG +
Preference number: 6 (lower is better)
Translates to: MSSKSTLSPSGI*GGTKLGMKSLL
Trigger: CAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAAGATCCCCGATGGAGAGAGAGTGGACTTTGATGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 90 bp TTGGGTGGCACCAAGTTGGGCATGAAGAGCCTGCTGGGCTTGGGTTaGGTGTCCTCTACTGGACCTTCTTCAGCATCTTTGGCTTCTTCA +
Preference number: 6 (lower is better)
Translates to: LGGTKLGMKSLLGLG*VSSTGPSSASLASS
Trigger: TGAAGAAGCCAAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGTGCCACCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 72 bp ACCAAGTTGGGCATGAAGAGCCTGCTGGGCTTGGGTTaGGTGTCCTCTACTGGACCTTCTTCAGCATCTTTG +
Preference number: 6 (lower is better)
Translates to: TKLGMKSLLGLG*VSSTGPSSASL
Trigger: CAAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAACCCAAGCCCAGCAGGCTCTTCATGCCCAACTTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 90 bp CTGGGCTTGGGTTTGGTGTCCTCTACTGGACCTTCTTCAGCATCTTaGGCTTCTTCATCAGGACCAACCTCTTCTACGTTGGCCTCCTCT +
Preference number: 6 (lower is better)
Translates to: LGLGLVSSTGPSSAS*ASSSGPTSSTLASS
Trigger: AGAGGAGGCCAACGTAGAAGAGGTTGGTCCTGATGAAGAAGCCAAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAACCCAAGCCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 90 bp CTCTCTCTCTGTCTGTCTCTTCCCACTCTTCCGCTCTGTCTGAGCTaGCTTCTGGATGTACCCTCCAAAGTGCATCATGTTGGACAGAGC +
Preference number: 6 (lower is better)
Translates to: LSLCLSLPTLPLCLS*LLDVPSKVHHVGQS
Trigger: GCTCTGTCCAACATGATGCACTTTGGAGGGTACATCCAGAAGCAAGCTCAGACAGAGCGGAAGAGTGGGAAGAGACAGACAGAGAGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178854.8
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS CAA 90 bp CGCCCGGTGACTTTGGCCTTCCCACGAGTTTTGGAGACTTTCTGGTaGTCATTGATCCGGTTTCGCAGAACGTTGATTTCGTATTTCTGC +
Preference number: 6 (lower is better)
Translates to: RPVTLAFPRVLETFW*SLIRFRRTLISYFC
Trigger: GCAGAAATACGAAATCAACGTTCTGCGAAACCGGATCAATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGCCAAAGTCACCGGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS CAA 72 bp GGTTTGGTGTCCTCTACTGGACCTTCTTCAGCATCTTaGGCTTCTTCATCAGGACCAACCTCTTCTACGTTG +
Preference number: 6 (lower is better)
Translates to: GLVSSTGPSSAS*ASSSGPTSSTL
Trigger: CAACGTAGAAGAGGTTGGTCCTGATGAAGAAGCCAAAGATGCTGAAGAAGGTCCAGTAGAGGACACCAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
ENSMUST00000189826.7
ENSMUST00000190451.7
CDS CAA 90 bp GTGACTTTGGCCTTCCCACGAGTTTTGGAGACTTTCTGGTTGTCATaGATCCGGTTTCGCAGAACGTTGATTTCGTATTTCTGCTGCTTG +
Preference number: 6 (lower is better)
Translates to: VTLAFPRVLETFWLS*IRFRRTLISYFCCL
Trigger: CAAGCAGCAGAAATACGAAATCAACGTTCTGCGAAACCGGATCAATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGCCAAAGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS CCA 72 bp GTGACTTTGGCCTTCCCACGAGTTTTGGAGACTTTCTaGTTGTCATTGATCCGGTTTCGCAGAACGTTGATT +
Preference number: 6 (lower is better)
Translates to: VTLAFPRVLETF*LSLIRFRRTLI
Trigger: AATCAACGTTCTGCGAAACCGGATCAATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGCCAAAGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7
CDS CAA 72 bp ACTTTGGCCTTCCCACGAGTTTTGGAGACTTTCTGGTaGTCATTGATCCGGTTTCGCAGAACGTTGATTTCG +
Preference number: 6 (lower is better)
Translates to: TLAFPRVLETFW*SLIRFRRTLIS
Trigger: CGAAATCAACGTTCTGCGAAACCGGATCAATGACAACCAGAAAGTCTCCAAAACTCGTGGGAAGGCCAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000027671.12
ENSMUST00000112085.9
ENSMUST00000112086.3
ENSMUST00000112087.9
ENSMUST00000178204.8
ENSMUST00000178854.8
ENSMUST00000179863.8
ENSMUST00000188028.7
ENSMUST00000189355.7
ENSMUST00000189732.7