Pregenerated sensors for TNNT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064179Ensembl transcript IDs: ENSMUST00000071798.13, ENSMUST00000108587.9, ENSMUST00000163538.8, ENSMUST00000163710.8, ENSMUST00000163722.8, ENSMUST00000166161.8, ENSMUST00000166268.8, ENSMUST00000166959.8, ENSMUST00000178163.8
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTCGATCAACCCACATAATAACAACCCTGAAGAACTTAAGCAGATaGCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCA | + |
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Preference number: 1 (lower is better) Translates to: CRSTHIITTLKNLSR*LGALYFELQMGHAP Trigger: TGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTTCAGGGTTGTTATTATGTGGGTTGATCGACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
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| 3UTR-3UTR CCA 90 bp | GTATGGAGATGTCGATCAACCCACATAATAACAACCCTGAAGAACTTAAGCAGAATTTTGAGTTACAGATaGGACACGCTCCAGTGGCTC | + |
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Preference number: 2 (lower is better) Translates to: VWRCRSTHIITTLKNLSRILSYR*DTLQWL Trigger: GAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAAT...TCTGCTTAAGTTCTTCAGGGTTGTTATTATGTGGGTTGATCGACATCTCCATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
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| 3UTR-3UTR GCA 90 bp | GAACTTGAACTCTCTTTAATGACAGTTGATGGCTCTCCCAGGCAGTATGGAGATAAGAACTTAAGCAGATaGCTGGGGGCACTTTATTTT | + |
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Preference number: 2 (lower is better) Translates to: ELELSLMTVDGSPRQYGDKNLSR*LGALYF Trigger: AAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTT...ATCTCCATACTGCCTGGGAGAGCCATCAACTGTCATTAAAGAGAGTTCAAGTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
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| 3UTR CCA 72 bp | GCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGATaGGACACGCTCCAGTGGCTCCTGGGCTCCACACAG | + |
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Preference number: 3 (lower is better) Translates to: ADAWGHFILSYR*DTLQWLLGSTQ Trigger: CTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| 3UTR CCA 72 bp | CACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTaGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: HFILSYRWDTLQ*LLGSTQQVMSW Trigger: CCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| 3UTR TCA 72 bp | GAAGAACTTAAGCAGATGCCTGGGGGCACTTTATTTTaGGTTACAGATGGGACACGCTCCAGTGGCTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: EELKQMPGGTLF*VTDGTRSSGSW Trigger: CCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
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| 3UTR GCA 72 bp | ACCCACATAATAACAACCCTGAAGAACTTAAGCAGATaGCTGGGGGCACTTTATTTTGAGTTACAGATGGGA | + |
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Preference number: 3 (lower is better) Translates to: THIITTLKNLSR*LGALYFELQMG Trigger: TCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTTCAGGGTTGTTATTATGTGGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
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| CDS-3UTR CCA 90 bp | GATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCCAGGACGGCTGGGTTTaGGGCGCTCTTCTCGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: DGTRSSGSWAPHSRSCPGQDGWV*GALLAL Trigger: CAGAGCGAGAAGAGCGCCCCAAACCCAGCCGTCCTG...GCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071798.13 |
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| CDS-3UTR GCA 90 bp | ATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCATTGCTCAGCTCTCTCTaGGCGTCGCCTCTCAATGCG | + |
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Preference number: 4 (lower is better) Translates to: MGHAPVAPGLHTAGHVLALLSSL*ASPLNA Trigger: CGCATTGAGAGGCGACGCGCAGAGAGAGCTGAGCAA...TGCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR GCA 90 bp | GATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCGTTCTGAAGCGCTGTTaGTCAGCTCTCTCTGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: DGTRSSGSWAPHSRSCPGVLKRC*SALSAR Trigger: ACGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAAC...GCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | GATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCCCCTTTCGGAATTTCTaGGCGTGGCTGATGCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: DGTRSSGSWAPHSRSCPGPFRNF*AWLMRL Trigger: CAACCGCATCAGCCACGCCCAGAAATTCCGAAAGGG...GCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | GATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCGCTTCTGTTCTGCCTTaGCCAGGTAGCCCCCAAAAT | + |
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Preference number: 4 (lower is better) Translates to: DGTRSSGSWAPHSRSCPGASVLP*PGSPQN Trigger: ATTTTGGGGGCTACCTGGTCAAGGCAGAACAGAAGC...GCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | TGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCAGGCTTCTGTTCTGCCTTaGCCAGGTAGCCCCCAAAAT | + |
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Preference number: 4 (lower is better) Translates to: WDTLQWLLGSTQQVMSWQASVLP*PGSPQN Trigger: ATTTTGGGGGCTACCTGGTCAAGGCAGAACAGAAGC...CTGCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR GCA 90 bp | CAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGTTCTGAAGCGCTGTTaGTCAGCTCTCTCTGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: QMGHAPVAPGLHTAGHVLVLKRC*SALSAR Trigger: ACGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAAC...CAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | ACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTCATTCTGACAGCTCCTaGGCCTTTTCCCGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: TDGTRSSGSWAPHSRSCPHSDSS*AFSRSW Trigger: CCAGCTCCGGGAAAAGGCCCAGGAGCTGTCAGAATG...AGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | TTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCAGGACGGCTGGGTTTaGGGCGCTCTTCTTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LQMGHAPVAPGLHTAGHVQDGWV*GALLPP Trigger: AGGAGGAAGAAGAGCGCCCCAAACCCAGCCGTCCTG...GACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163710.8 |
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| CDS-3UTR TCA 90 bp | ACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGCTCCTTTTCCGTTCTaGAGCGCTGTTGCTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: TDGTRSSGSWAPHSRSCPAPFPF*SAVAQL Trigger: GAGCTGAGCAACAGCGCTTCAGAACGGAAAAGGAGC...AGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | ACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTCTGGTGGATCCATTCTaGCAGCTCCTGGGCCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: TDGTRSSGSWAPHSRSCPLVDPF*QLLGLF Trigger: GAAAAGGCCCAGGAGCTGTCAGAATGGATCCACCAG...AGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | TGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCTCCTCCGCCAGCTTaGCCTGGCGTTCTCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: WGHFILSYRWDTLQWLLGSPPPA*PGVLAP Trigger: AGGAGCGAGAACGCCAGGCCAAGCTGGCGGAGGAGA...GCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | GCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGTCTCCTCCGCCAGCTTaGCCTGGCGTTCTCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: AWGHFILSYRWDTLQWLLSPPPA*PGVLAP Trigger: AGGAGCGAGAACGCCAGGCCAAGCTGGCGGAGGAGA...CAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | ATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGTCTCCTCCGCCAGCTTaGCCTGGCGTTCTCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: ILSYRWDTLQWLLGSTQQSPPPA*PGVLAP Trigger: AGGAGCGAGAACGCCAGGCCAAGCTGGCGGAGGAGA...CTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR GCA 90 bp | GTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTGTTCTGAAGCGCTGTTaGTCAGCTCTCTCTGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: VTDGTRSSGSWAPHSRSCVLKRC*SALSAR Trigger: ACGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAAC...ACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | TGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCAGTCCATGCGCTTCCGGTaGATGTCATCAAAATCCACA | + |
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Preference number: 4 (lower is better) Translates to: WDTLQWLLGSTQQVMSWQSMRFR*MSSKST Trigger: TGTGGATTTTGATGACATCCACCGGAAGCGCATGGA...CTGCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | GTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCCTTTCGGAATTTCTaGGCGTGGCTGATGCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: VTDGTRSSGSWAPHSRSCPFRNF*AWLMRL Trigger: CAACCGCATCAGCCACGCCCAGAAATTCCGAAAGGG...ACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | ATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGCAGGACGGCTGGGTTTaGGGCGCTCTTCTTCTCGCT | + |
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Preference number: 4 (lower is better) Translates to: ILSYRWDTLQWLLGSTQQQDGWV*GALLLA Trigger: AGCGAGAAGAAGAGCGCCCCAAACCCAGCCGTCCTG...CTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108587.9 |
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| CDS-3UTR TCA 90 bp | TGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCAGGGTCTTTTAGTGCAATaGGCTCTTCCTCCTCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: WDTLQWLLGSTQQVMSWQGLLVQ*ALPPPF Trigger: AAAAGGAGGAGGAAGAGCTCATTGCACTAAAAGACC...CTGCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | TTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCGCTTCTGTTCTGCCTTaGCCAGGTAGCCCCCAAAAT | + |
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Preference number: 4 (lower is better) Translates to: LQMGHAPVAPGLHTAGHVASVLP*PGSPQN Trigger: ATTTTGGGGGCTACCTGGTCAAGGCAGAACAGAAGC...GACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | GATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCCAGGTCAAATTTTTCTaGTTCCAGCTGGTGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: DGTRSSGSWAPHSRSCPGQVKFF*FQLVDP Trigger: TGGATCCACCAGCTGGAATCAGAAAAATTTGACCTG...GCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | TTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATTTCTGGGCGTGGCTaGTGCGGTTGTAGAGCACAT | + |
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Preference number: 4 (lower is better) Translates to: LSYRWDTLQWLLGSTQQVISGRG*CGCRAH Trigger: ATGTGCTCTACAACCGCATCAGCCACGCCCAGAAAT...GACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | TGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCAGGAACTTTCTTCTTCTTaGCGTCATCCTCTGCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: WDTLQWLLGSTQQVMSWQELSSS*RHPLLS Trigger: AGAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTC...CTGCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | TGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCCATTCTGACAGCTCCTaGGCCTTTTCCCGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: WGHFILSYRWDTLQWLLGHSDSS*AFSRSW Trigger: CCAGCTCCGGGAAAAGGCCCAGGAGCTGTCAGAATG...GCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | CTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCATTCTGACAGCTCCTaGGCCTTTTCCCGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LGALYFELQMGHAPVAPGHSDSS*AFSRSW Trigger: CCAGCTCCGGGAAAAGGCCCAGGAGCTGTCAGAATG...CCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | GGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCCATTCTGACAGCTCCTaGGCCTTTTCCCGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GHFILSYRWDTLQWLLGSHSDSS*AFSRSW Trigger: CCAGCTCCGGGAAAAGGCCCAGGAGCTGTCAGAATG...GGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | GGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCCTGGTGGATCCATTCTaGCAGCTCCTGGGCCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: GHFILSYRWDTLQWLLGSLVDPF*QLLGLF Trigger: GAAAAGGCCCAGGAGCTGTCAGAATGGATCCACCAG...GGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | ATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGCTGGTGGATCCATTCTaGCAGCTCCTGGGCCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: ILSYRWDTLQWLLGSTQQLVDPF*QLLGLF Trigger: GAAAAGGCCCAGGAGCTGTCAGAATGGATCCACCAG...CTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR TCA 90 bp | AGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCAGGTCAAATTTTTCTaGTTCCAGCTGGTGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: RWDTLQWLLGSTQQVMSWQVKFF*FQLVDP Trigger: TGGATCCACCAGCTGGAATCAGAAAAATTTGACCTG...CCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR GCA 90 bp | GATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCTTGCTCAGCTCTCTCTaGGCGTCGCCTCTCAATGCG | + |
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Preference number: 4 (lower is better) Translates to: DAWGHFILSYRWDTLQWLLLSSL*ASPLNA Trigger: CGCATTGAGAGGCGACGCGCAGAGAGAGCTGAGCAA...GAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR GCA 90 bp | CTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGGTTCTGAAGCGCTGTTaGTCAGCTCTCTCTGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: LGALYFELQMGHAPVAPGVLKRC*SALSAR Trigger: ACGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAAC...CCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | TGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCCCCTTTCGGAATTTCTaGGCGTGGCTGATGCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: WGHFILSYRWDTLQWLLGPFRNF*AWLMRL Trigger: CAACCGCATCAGCCACGCCCAGAAATTCCGAAAGGG...GCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR GCA 90 bp | CTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTTGGCGTCATCCTCTaGTCTCTTCTTTGCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LGALYFELQMGHAPVAPGLGVIL*SLLCLL Trigger: GAGGAGGCAAAGAAGAGAGCAGAGGATGACGCCAAG...CCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CCA 90 bp | AGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCATGCGCTTCCGGTaGATGTCATCAAAATCCACA | + |
|
Preference number: 4 (lower is better) Translates to: SYRWDTLQWLLGSTQQVMSMRFR*MSSKST Trigger: TGTGGATTTTGATGACATCCACCGGAAGCGCATGGA...CATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CCA 90 bp | ACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGAACTTTCTTCTTCTTaGCGTCATCCTCTGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: TDGTRSSGSWAPHSRSCPELSSS*RHPLLS Trigger: AGAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTC...AGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CCA 90 bp | TATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCACCCTTTCGGAATTTCTaGGCGTGGCTGATGCGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: YFELQMGHAPVAPGLHTAPFRNF*AWLMRL Trigger: CAACCGCATCAGCCACGCCCAGAAATTCCGAAAGGG...TGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR TCA 90 bp | GAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGGTCTTTTAGTGCAATaGGCTCTTCCTCCTCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: ELQMGHAPVAPGLHTAGHGLLVQ*ALPPPF Trigger: AAAAGGAGGAGGAAGAGCTCATTGCACTAAAAGACC...ATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR TCA 90 bp | TTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCTGGTGGATCCATTCTaGCAGCTCCTGGGCCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: FILSYRWDTLQWLLGSTQLVDPF*QLLGLF Trigger: GAAAAGGCCCAGGAGCTGTCAGAATGGATCCACCAG...CTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR TCA 90 bp | AGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGGGTTGTAGAGCACATTaGTCTCATATTTCTGTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RWDTLQWLLGSTQQVMSWGCRAH*SHISVA Trigger: AGCAACAGAAATATGAGATCAATGTGCTCTACAACC...CCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR TCA 90 bp | GCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGATTTCTGGGCGTGGCTaGTGCGGTTGTAGAGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: ADAWGHFILSYRWDTLQWISGRG*CGCRAH Trigger: ATGTGCTCTACAACCGCATCAGCCACGCCCAGAAAT...CCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR TCA 90 bp | GATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCATTTCTGGGCGTGGCTaGTGCGGTTGTAGAGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: DAWGHFILSYRWDTLQWLISGRG*CGCRAH Trigger: ATGTGCTCTACAACCGCATCAGCCACGCCCAGAAAT...GAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR GCA 90 bp | AGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTCATCTTCTGCCTaGTCCTCCTCATATTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: SYRWDTLQWLLGSTQQVMSSSSA*SSSYSC Trigger: ACAAGAATATGAGGAGGAGCAGGCAGAAGATGAGGA...CATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR GCA 90 bp | TGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTCTTGGCGTCATCCTCTaGTCTCTTCTTTGCCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: CLGALYFELQMGHAPVAPLGVIL*SLLCLL Trigger: GAGGAGGCAAAGAAGAGAGCAGAGGATGACGCCAAG...AGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR GCA 90 bp | GCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTTGGCGTCATCCTCTaGTCTCTTCTTTGCCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ADAWGHFILSYRWDTLQWLGVIL*SLLCLL Trigger: GAGGAGGCAAAGAAGAGAGCAGAGGATGACGCCAAG...CCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CCA 90 bp | AGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGGAACTTTCTTCTTCTTaGCGTCATCCTCTGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SYRWDTLQWLLGSTQQVMELSSS*RHPLLS Trigger: AGAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTC...CATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CCA 90 bp | GGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCTCCATGCGCTTCCGGTaGATGTCATCAAAATCCACA | + |
|
Preference number: 4 (lower is better) Translates to: GALYFELQMGHAPVAPGLSMRFR*MSSKST Trigger: TGTGGATTTTGATGACATCCACCGGAAGCGCATGGA...GAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CCA 90 bp | AAGAACTTAAGCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACTCTCCTCCGCCAGCTTaGCCTGGCGTTCTCGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KNLSRCLGALYFELQMGHSPPPA*PGVLAP Trigger: AGGAGCGAGAACGCCAGGCCAAGCTGGCGGAGGAGA...GTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
||
| CDS-3UTR CCA 90 bp | TGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTTCCATGCGCTTCCGGTaGATGTCATCAAAATCCACA | + |
|
Preference number: 4 (lower is better) Translates to: CLGALYFELQMGHAPVAPSMRFR*MSSKST Trigger: TGTGGATTTTGATGACATCCACCGGAAGCGCATGGA...AGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CCA 90 bp | GCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGGAACTTTCTTCTTCTTaGCGTCATCCTCTGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ADAWGHFILSYRWDTLQWELSSS*RHPLLS Trigger: AGAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTC...CCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR GCA 90 bp | CTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACATCCTCATCTTCTGCCTaGTCCTCCTCATATTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LYFELQMGHAPVAPGLHTSSSSA*SSSYSC Trigger: ACAAGAATATGAGGAGGAGCAGGCAGAAGATGAGGA...TGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR TCA 90 bp | ACAACCCTGAAGAACTTAAGCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGGCTTCTGTTCTGCCTTaGCCAGGTAGCCCCCAAAAT | + |
|
Preference number: 4 (lower is better) Translates to: TTLKNLSRCLGALYFELQASVLP*PGSPQN Trigger: ATTTTGGGGGCTACCTGGTCAAGGCAGAACAGAAGC...CTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTTCAGGGTTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
||
| CDS-3UTR TCA 90 bp | GCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGGGTTGTAGAGCACATTaGTCTCATATTTCTGTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: ADAWGHFILSYRWDTLQWGCRAH*SHISVA Trigger: AGCAACAGAAATATGAGATCAATGTGCTCTACAACC...CCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR TCA 90 bp | GTATGGAGATGTCGATCAACCCACATAATAACAACCCTGAAGAACTTAAGCAGAGCTCCTTTTCCGTTCTaGAGCGCTGTTGCTCAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: VWRCRSTHIITTLKNLSRAPFPF*SAVAQL Trigger: GAGCTGAGCAACAGCGCTTCAGAACGGAAAAGGAGC...TCTGCTTAAGTTCTTCAGGGTTGTTATTATGTGGGTTGATCGACATCTCCATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
||
| CDS-3UTR TCA 90 bp | TTAATGACAGTTGATGGCTCTCCCAGGCAGTATGGAGATGTCGATCAACCCACACAGGTCAAATTTTTCTaGTTCCAGCTGGTGGATCCA | + |
|
Preference number: 4 (lower is better) Translates to: LMTVDGSPRQYGDVDQPTQVKFF*FQLVDP Trigger: TGGATCCACCAGCTGGAATCAGAAAAATTTGACCTG...TGTGGGTTGATCGACATCTCCATACTGCCTGGGAGAGCCATCAACTGTCATTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
||
| CDS-3UTR TCA 90 bp | TCAACCCACATAATAACAACCCTGAAGAACTTAAGCAGATGCCTGGGGGCACTTGGTCTTTTAGTGCAATaGGCTCTTCCTCCTCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: STHIITTLKNLSRCLGALGLLVQ*ALPPPF Trigger: AAAAGGAGGAGGAAGAGCTCATTGCACTAAAAGACC...AAGTGCCCCCAGGCATCTGCTTAAGTTCTTCAGGGTTGTTATTATGTGGGTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
||
| CDS-3UTR GCA 90 bp | ACAACCCTGAAGAACTTAAGCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGTCCTCATCTTCTGCCTaGTCCTCCTCATATTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: TTLKNLSRCLGALYFELQSSSSA*SSSYSC Trigger: ACAAGAATATGAGGAGGAGCAGGCAGAAGATGAGGA...CTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTTCAGGGTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
||
| CDS-3UTR TCA 90 bp | ACCCTGAAGAACTTAAGCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGTTGTAGAGCACATTaGTCTCATATTTCTGTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TLKNLSRCLGALYFELQMGCRAH*SHISVA Trigger: AGCAACAGAAATATGAGATCAATGTGCTCTACAACC...CATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTTCAGGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
||
| CDS-3UTR CAA 90 bp | ATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCATTCTCCTCCGCCAGCTaGGCCTGGCGTTCTCGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: MGHAPVAPGLHTAGHVLAFSSAS*AWRSRS Trigger: GGAGCGAGAACGCCAGGCCAAGCTGGCGGAGGAGAA...TGCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CAA 90 bp | AGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGTTCTCCTCCGCCAGCTaGGCCTGGCGTTCTCGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: RWDTLQWLLGSTQQVMSWFSSAS*AWRSRS Trigger: GGAGCGAGAACGCCAGGCCAAGCTGGCGGAGGAGAA...CCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CAA 90 bp | AGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCGTTCTGAAGCGCTGTaGCTCAGCTCTCTCTGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: RWDTLQWLLGSTQQVMSWRSEAL*LSSLCA Trigger: CGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAACG...CCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CAA 90 bp | GAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATACAGGACGGCTGGGTTaGGGGCGCTCTTCTTCTCGC | + |
|
Preference number: 5 (lower is better) Translates to: ELQMGHAPVAPGLHTAGHTGRLG*GRSSSR Trigger: GCGAGAAGAAGAGCGCCCCAAACCCAGCCGTCCTGT...ATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108587.9 |
||
| CDS-3UTR CAA 90 bp | TTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCGTTCTGAAGCGCTGTaGCTCAGCTCTCTCTGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: LQMGHAPVAPGLHTAGHVRSEAL*LSSLCA Trigger: CGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAACG...GACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CAA 90 bp | TTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCGTTCTGAAGCGCTGTaGCTCAGCTCTCTCTGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: FELQMGHAPVAPGLHTAGRSEAL*LSSLCA Trigger: CGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAACG...ACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CAA 90 bp | GGACACGCTCCAGTGGCTCCTGGGCTCCACACAGCAGGTCATGTCCTGGCAGTCAGAACTTTCTTCTTCTaGGCGTCATCCTCTGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: GHAPVAPGLHTAGHVLAVRTFFF*ASSSAL Trigger: GAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTCT...GACTGCCAGGACATGACCTGCTGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
||
| CDS GCA 90 bp | AGCTTGGCCTGGCGTTCTCGCTCCTTTTCCGTTCTGAAGCGCTGTTaGTCAGCTCTCTCTGCGCGTCGCCTCTCAATGCGGTCTTTTAGT | + |
|
Preference number: 5 (lower is better) Translates to: SLAWRSRSFSVLKRC*SALSARRLSMRSFS Trigger: ACTAAAAGACCGCATTGAGAGGCGACGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAACGGAAAAGGAGCGAGAACGCCAGGCCAAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163538.8 ENSMUST00000163710.8 ENSMUST00000166161.8 ENSMUST00000166268.8 ENSMUST00000166959.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CAA 90 bp | CTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAACAGGACGGCTGGGTTaGGGGCGCTCTTCTTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LYFELQMGHAPVAPGLHTTGRLG*GRSSSS Trigger: GGAGGAAGAAGAGCGCCCCAAACCCAGCCGTCCTGT...TGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163710.8 |
||
| CDS GCA 90 bp | GGACAGAACTTTCTTCTTCTTGGCGTCATCCTCTGCTCTCTTCTTTaGCTCCTCCTCCTCCTTCCGCATCTTCTCCTCCGCCAGCTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: GQNFLLLGVILCSLL*LLLLLPHLLLRQLG Trigger: GCCAAGCTGGCGGAGGAGAAGATGCGGAAGGAGGAGGAGGAGGCAAAGAAGAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTCTGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163538.8 ENSMUST00000163710.8 ENSMUST00000166161.8 ENSMUST00000166268.8 ENSMUST00000166959.8 ENSMUST00000178163.8 |
||
| CDS TCA 90 bp | CAGCTCTCTCTGCGCGTCGCCTCTCAATGCGGTCTTTTAGTGCAATaGGCTCTTCCTCCTCCTTTTTCCGCTGTTCAAAGTGCACGTCGA | + |
|
Preference number: 5 (lower is better) Translates to: QLSLRVASQCGLLVQ*ALPPPFSAVQSARR Trigger: TCGACGTGCACTTTGAACAGCGGAAAAAGGAGGAGGAAGAGCTCATTGCACTAAAAGACCGCATTGAGAGGCGACGCGCAGAGAGAGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 9 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163538.8 ENSMUST00000163710.8 ENSMUST00000163722.8 ENSMUST00000166161.8 ENSMUST00000166268.8 ENSMUST00000166959.8 ENSMUST00000178163.8 |
||
| CDS GCA 90 bp | AGCTCCCATGTTGGACAGAACTTTCTTCTTCTTGGCGTCATCCTCTaGTCTCTTCTTTGCCTCCTCCTCCTCCTTCCGCATCTTCTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: SSHVGQNFLLLGVIL*SLLCLLLLLPHLLL Trigger: GAGGAGAAGATGCGGAAGGAGGAGGAGGAGGCAAAGAAGAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTCTGTCCAACATGGGAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163538.8 ENSMUST00000163710.8 ENSMUST00000166161.8 ENSMUST00000166268.8 ENSMUST00000166959.8 ENSMUST00000178163.8 |
||
| CDS CCA 90 bp | TGCTTCAACTTCTCCATCAGGTCAAATTTTTCTGATTCCAGCTGGTaGATCCATTCTGACAGCTCCTGGGCCTTTTCCCGGAGCTGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: CFNFSIRSNFSDSSW*IHSDSSWAFSRSWS Trigger: GGACCAGCTCCGGGAAAAGGCCCAGGAGCTGTCAGAATGGATCCACCAGCTGGAATCAGAAAAATTTGACCTGATGGAGAAGTTGAAGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000166161.8 ENSMUST00000178163.8 |
||
| CDS CCA 90 bp | TGTTGCTTCAACTTCTCCATCAGGTCAAATTTTTCTGATTCCAGCTaGTGGATCCATTCTGACAGCTCCTGGGCCTTTTCCCGGAGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: CCFNFSIRSNFSDSS*WIHSDSSWAFSRSW Trigger: CCAGCTCCGGGAAAAGGCCCAGGAGCTGTCAGAATGGATCCACCAGCTGGAATCAGAAAAATTTGACCTGATGGAGAAGTTGAAGCAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000166161.8 ENSMUST00000178163.8 |
||
| CDS-3UTR CAA 90 bp | CTTTATTTTGAGTTACAGATGGGACACGCTCCAGTGGCTCCTGGGCTCCACACAAGAACTTTCTTCTTCTaGGCGTCATCCTCTGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: LYFELQMGHAPVAPGLHTRTFFF*ASSSAL Trigger: GAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTCT...TGTGTGGAGCCCAGGAGCCACTGGAGCGTGTCCCATCTGTAACTCAAAATAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000178163.8 |
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| CDS-3UTR CAA 90 bp | AAGAACTTAAGCAGATGCCTGGGGGCACTTTATTTTGAGTTACAGATGGGACACAGAACTTTCTTCTTCTaGGCGTCATCCTCTGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: KNLSRCLGALYFELQMGHRTFFF*ASSSAL Trigger: GAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTCT...GTGTCCCATCTGTAACTCAAAATAAAGTGCCCCCAGGCATCTGCTTAAGTTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
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| CDS-3UTR CAA 90 bp | GTATGGAGATGTCGATCAACCCACATAATAACAACCCTGAAGAACTTAAGCAGAAGAACTTTCTTCTTCTaGGCGTCATCCTCTGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: VWRCRSTHIITTLKNLSRRTFFF*ASSSAL Trigger: GAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTCT...TCTGCTTAAGTTCTTCAGGGTTGTTATTATGTGGGTTGATCGACATCTCCATAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 |
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| CDS GCA 72 bp | CACAGGACGGCTGGGTTTGGGGCGCTCTTCTCGCTCTaGCACCGGCTCCGGCTCCTCGGGGGCTTCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: HRTAGFGALFSL*HRLRLLGGFLL Trigger: GAGGAGGAAGCCCCCGAGGAGCCGGAGCCGGTGGCAGAGCGAGAAGAGCGCCCCAAACCCAGCCGTCCTGTG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000163538.8 |
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| CDS GCA 72 bp | AGGACGGCTGGGTTTGGGGCGCTCTTCTTCTCGCTCTaGCACCGGCTCCGGCTCCTCGGGGGCTTCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: RTAGFGALFFSL*HRLRLLGGFLL Trigger: GAGGAGGAAGCCCCCGAGGAGCCGGAGCCGGTGGCAGAGCGAGAAGAAGAGCGCCCCAAACCCAGCCGTCCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108587.9 ENSMUST00000163722.8 ENSMUST00000166959.8 |
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| CDS GCA 72 bp | CACAGGACGGCTGTGTCGCACACGCTGTTCTCGCTCTaGCACCGGCTCCGGCTCCTCGGGGGCTTCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: HRTAVSHTLFSL*HRLRLLGGFLL Trigger: GAGGAGGAAGCCCCCGAGGAGCCGGAGCCGGTGGCAGAGCGAGAACAGCGTGTGCGACACAGCCGTCCTGTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178163.8 |
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| CDS CAA 72 bp | GGGGGAATCAAAGGAGGCACCACAGGACGGCTGGGTTaGGGGCGCTCTTCTCGCTCTGCCACCGGCTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: GGIKGGTTGRLG*GRSSRSATGSG Trigger: GCCGGAGCCGGTGGCAGAGCGAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000163538.8 |
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| CDS CCA 72 bp | GGGGAATCAAAGGAGGCACCACAGGACGGCTGGGTTTaGGGCGCTCTTCTCGCTCTGCCACCGGCTCCGGCT | + |
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Preference number: 6 (lower is better) Translates to: GESKEAPQDGWV*GALLALPPAPA Trigger: AGCCGGAGCCGGTGGCAGAGCGAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000163538.8 |
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| CDS CCA 72 bp | GGGGAATCAAAGGAGGCACCACAGGACGGCTGGGTTTaGGGCGCTCTTCTTCTCGCTCTGCCACCGGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: GESKEAPQDGWV*GALLLALPPAP Trigger: CGGAGCCGGTGGCAGAGCGAGAAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108587.9 ENSMUST00000163722.8 ENSMUST00000166959.8 |
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| CDS CAA 72 bp | GGGGGAATCAAAGGAGGCACCACAGGACGGCTGGGTTaGGGGCGCTCTTCTTCTCGCTCTGCCACCGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: GGIKGGTTGRLG*GRSSSRSATGS Trigger: GGAGCCGGTGGCAGAGCGAGAAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108587.9 ENSMUST00000163722.8 ENSMUST00000166959.8 |
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| CDS CCA 72 bp | TCTTCGGGGGAATCAAAGGAGGCACCACAGGACGGCTaGGTTTGGGGCGCTCTTCTCGCTCTGCCACCGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSGESKEAPQDG*VWGALLALPPA Trigger: AGCCGGTGGCAGAGCGAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCCCGAAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071798.13 ENSMUST00000163538.8 |
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| CDS CCA 72 bp | TCTTCGGGGGAATCAAAGGAGGCACCACAGGACGGCTaGGTTTGGGGCGCTCTTCTTCTCGCTCTGCCACCG | + |
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Preference number: 6 (lower is better) Translates to: SSGESKEAPQDG*VWGALLLALPP Trigger: CGGTGGCAGAGCGAGAAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCCCGAAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108587.9 ENSMUST00000163722.8 ENSMUST00000166959.8 |
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| CDS CCA 72 bp | TCTTCGGGGGAATCAAAGGAGGCACCACAGGACGGCTaGGTTTGGGGCGCTCTTCTTCCTCCTCCTCCACCG | + |
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Preference number: 6 (lower is better) Translates to: SSGESKEAPQDG*VWGALLPPPPP Trigger: CGGTGGAGGAGGAGGAAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCCCGAAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163710.8 |
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| CDS GCA 72 bp | TGGCGTTCTCGCTCCTTTTCCGTTCTGAAGCGCTGTTaGTCAGCTCTCTCTGCGCGTCGCCTCTCAATGCGG | + |
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Preference number: 6 (lower is better) Translates to: WRSRSFSVLKRC*SALSARRLSMR Trigger: CCGCATTGAGAGGCGACGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAACGGAAAAGGAGCGAGAACGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163538.8 ENSMUST00000163710.8 ENSMUST00000166161.8 ENSMUST00000166268.8 ENSMUST00000166959.8 ENSMUST00000178163.8 |
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| CDS CCA 72 bp | TCTTCGGGGGAATCAAAGGAGGCACCACAGGACGGCTaGGTTTGGGGCGCTCTTCTTCTTCCTCCTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SSGESKEAPQDG*VWGALLLPPPP Trigger: TGGAGGAGGAGGAAGAAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCCTCCTTTGATTCCCCCGAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166268.8 |
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| CDS TCA 72 bp | GACCAGTCTGTCGCTTCCCACGCTTCTGTTCTGCCTTaGCCAGGTAGCCCCCAAAATGAGCTCCCATGTTGG | + |
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Preference number: 6 (lower is better) Translates to: DQSVASHASVLP*PGSPQNELPCW Trigger: CCAACATGGGAGCTCATTTTGGGGGCTACCTGGTCAAGGCAGAACAGAAGCGTGGGAAGCGACAGACTGGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000166161.8 ENSMUST00000166268.8 ENSMUST00000166959.8 ENSMUST00000178163.8 |
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| CDS TCA 72 bp | CCTCCTCCTTTTTCCGCTGTTCAAAGTGCACGTCGATaGGCGTCTGCAGCTCCAGTAAGTCTTTCTCCATGC | + |
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Preference number: 6 (lower is better) Translates to: PPPFSAVQSARR*ASAAPVSLSPC Trigger: GCATGGAGAAAGACTTACTGGAGCTGCAGACGCTCATCGACGTGCACTTTGAACAGCGGAAAAAGGAGGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 9 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163538.8 ENSMUST00000163710.8 ENSMUST00000163722.8 ENSMUST00000166161.8 ENSMUST00000166268.8 ENSMUST00000166959.8 ENSMUST00000178163.8 |
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| CDS TCA 72 bp | CTGCGCGTCGCCTCTCAATGCGGTCTTTTAGTGCAATaGGCTCTTCCTCCTCCTTTTTCCGCTGTTCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: LRVASQCGLLVQ*ALPPPFSAVQS Trigger: ACTTTGAACAGCGGAAAAAGGAGGAGGAAGAGCTCATTGCACTAAAAGACCGCATTGAGAGGCGACGCGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 9 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163538.8 ENSMUST00000163710.8 ENSMUST00000163722.8 ENSMUST00000166161.8 ENSMUST00000166268.8 ENSMUST00000166959.8 ENSMUST00000178163.8 |
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| CDS CCA 72 bp | TTCTCCATCAGGTCAAATTTTTCTGATTCCAGCTGGTaGATCCATTCTGACAGCTCCTGGGCCTTTTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: FSIRSNFSDSSW*IHSDSSWAFSR Trigger: CCGGGAAAAGGCCCAGGAGCTGTCAGAATGGATCCACCAGCTGGAATCAGAAAAATTTGACCTGATGGAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000071798.13 ENSMUST00000108587.9 ENSMUST00000163710.8 ENSMUST00000166161.8 ENSMUST00000178163.8 |
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