RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNNI3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035458

Ensembl transcript IDs: ENSMUST00000098859.10, ENSMUST00000140424.8, ENSMUST00000154913.2, ENSMUST00000209148.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp TGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGCGGAGCAGGCGCAGGCTaGGGTTCCCCAGCCGCATCG +
Preference number: 4 (lower is better)
Translates to: WFGEVYSAGTSFRAQCGSGAGAG*GSPAAS
Trigger: CGATGCGGCTGGGGAACCGCAGCCTGCGCCTGCTCC...GCTCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR CCA 90 bp TTCTGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGGGTCCAAGGATTCCTTaGCCCGGGTCCCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: FWFGEVYSAGTSFRAQCGGPRIP*PGSPAA
Trigger: CGCTGCTGGGGACCCGGGCCAAGGAATCCTTGGACC...CCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCAGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR TCA 90 bp TCTGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGATTGTCCACCCGAGCGTaGAGCTGTCGGCATAAGTCC +
Preference number: 4 (lower is better)
Translates to: SGLERFILQGRPSEHSVGLSTRA*SCRHKS
Trigger: GGACTTATGCCGACAGCTTCACGCTCGGGTGGACAA...TCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR GCA 90 bp GGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGCCCTGCATCATGGCATCTaGAGAGATCCTCACTCTTCG +
Preference number: 4 (lower is better)
Translates to: GLERFILQGRPSEHSVGALHHGI*RDPHSS
Trigger: CGAAGAGTGAGGATCTCTGCAGATGCCATGATGCAG...GGCTCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR GCA 90 bp TCTGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGTGCATCGATATTCTTaGGCCAGTCTCCCACCTCCC +
Preference number: 4 (lower is better)
Translates to: SGLERFILQGRPSEHSVGVHRYS*ASLPPP
Trigger: GGGAGGTGGGAGACTGGCGCAAGAATATCGATGCAC...TCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR CCA 90 bp TCTGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGCAGCGCCTGCATCATaGCATCTGCAGAGATCCTCA +
Preference number: 4 (lower is better)
Translates to: SGLERFILQGRPSEHSVGAAPAS*HLQRSS
Trigger: TGAGGATCTCTGCAGATGCCATGATGCAGGCGCTGC...TCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR GCA 90 bp TGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGCTCTTGCGGCCTTCCATaGCACTCAGTGCATCGATAT +
Preference number: 4 (lower is better)
Translates to: WFGEVYSAGTSFRAQCGSSCGLP*HSVHRY
Trigger: ATATCGATGCACTGAGTGGCATGGAAGGCCGCAAGA...GCTCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR TCA 90 bp TGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGCATCAGAGTCTTCAACTaGAGTTTTCTGGAGGCGGAG +
Preference number: 4 (lower is better)
Translates to: WFGEVYSAGTSFRAQCGSIRVFN*SFLEAE
Trigger: CTCCGCCTCCAGAAAACTTCAGTTGAAGACTCTGAT...GCTCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR GCA 90 bp TTCTGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGTCTCGTTCCATCTCCTaGTTCGCAATCTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: FWFGEVYSAGTSFRAQCGSRSIS*FAICSI
Trigger: GATGCTGCAGATTGCGAAGCAGGAGATGGAACGAGA...CCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR GCA 90 bp GGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGCCATGGCGTTCTTGGTGACTTTTaGTTCCACGTCATATCTCTC +
Preference number: 4 (lower is better)
Translates to: GEVYSAGTSFRAQCGSHGVLGDF*FHVISL
Trigger: GAGAGATATGACGTGGAAGCAAAAGTCACCAAGAAC...GCCATGGCTCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR GCA 90 bp TCTGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGATTCCATGCCACTCAGTaGATCGATATTCTTGCGCCA +
Preference number: 4 (lower is better)
Translates to: SGLERFILQGRPSEHSVGFHATQ*IDILAP
Trigger: TGGCGCAAGAATATCGATGCACTGAGTGGCATGGAA...TCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS GCA 90 bp GGATTCCTTGGCCCGGGTCCCCAGCAGCGCCTGCATCATGGCATCTaGAGAGATCCTCACTCTTCGGAGGGTGGGCCGCTTAAACTTGCC +
Preference number: 5 (lower is better)
Translates to: GFLGPGPQQRLHHGI*RDPHSSEGGPLKLA
Trigger: GGCAAGTTTAAGCGGCCCACCCTCCGAAGAGTGAGGATCTCTGCAGATGCCATGATGCAGGCGCTGCTGGGGACCCGGGCCAAGGAATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS-3UTR CAA 90 bp GGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGCCATGGCAGGTCCAAGGATTCCTaGGCCCGGGTCCCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: GEVYSAGTSFRAQCGSHGRSKDS*ARVPSS
Trigger: GCTGCTGGGGACCCGGGCCAAGGAATCCTTGGACCT...GCCATGGCTCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS GCA 90 bp GCAACGAGTCCTCAGAACGCGCCCCTTCTCTCCACGTCGCTCTTCTaGCTCTCGTTCCATCTCCTGCTTCGCAATCTGCAGCATCAGAGT +
Preference number: 5 (lower is better)
Translates to: ATSPQNAPLLSTSLF*LSFHLLLRNLQHQS
Trigger: ACTCTGATGCTGCAGATTGCGAAGCAGGAGATGGAACGAGAGGCAGAAGAGCGACGTGGAGAGAAGGGGCGCGTTCTGAGGACTCGTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098859.10
ENSMUST00000140424.8
ENSMUST00000154913.2
ENSMUST00000209148.2
CDS CCA 90 bp CTGAAGTTTTCTGGAGGCGGAGATCTTAGACTTTTTCTTGGCGTGTaGCTCGGTGGCATAGGCTCGGTAGTTGGCAGAGGAGCGGCGTCG +
Preference number: 5 (lower is better)
Translates to: LKFSGGGDLRLFLGV*LGGIGSVVGRGAAS
Trigger: CGACGCCGCTCCTCTGCCAACTACCGAGCCTATGCCACCGAGCCACACGCCAAGAAAAAGTCTAAGATCTCCGCCTCCAGAAAACTTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098859.10
ENSMUST00000140424.8
ENSMUST00000154913.2
CDS CCA 90 bp TCCAACCACCCTTGCCTCCTACTCTCTCAGGACAAGTATCCAACCTaGTTGCACCCTCAAGACCCACCGCACCTCTCCCTGTTGAGGTCT +
Preference number: 5 (lower is better)
Translates to: SNHPCLLLSQDKYPT*LHPQDPPHLSLLRS
Trigger: AGACCTCAACAGGGAGAGGTGCGGTGGGTCTTGAGGGTGCAACCAGGTTGGATACTTGTCCTGAGAGAGTAGGAGGCAAGGGTGGTTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS-3UTR CAA 90 bp GGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGCCATGGCAGTGCATCGATATTCTaGCGCCAGTCTCCCACCTCC +
Preference number: 5 (lower is better)
Translates to: GEVYSAGTSFRAQCGSHGSASIF*RQSPTS
Trigger: GGAGGTGGGAGACTGGCGCAAGAATATCGATGCACT...GCCATGGCTCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS TCA 90 bp ATCCAACCTGGTTGCACCCTCAAGACCCACCGCACCTCTCCCTGTTaGGGTCTCCACCCCAAGGCTACGAAGATTCACATACTCATCAGC +
Preference number: 5 (lower is better)
Translates to: IQPGCTLKTHRTSPC*GLHPKATKIHILIS
Trigger: GCTGATGAGTATGTGAATCTTCGTAGCCTTGGGGTGGAGACCTCAACAGGGAGAGGTGCGGTGGGTCTTGAGGGTGCAACCAGGTTGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS GCA 90 bp GAAGGTTCCCTACCCCACTTCTTAGCTCACAGCTCACCGCATCGCTaGTCCTCATTTCTACAGAAATCCAACCACCCTTGCCTCCTACTC +
Preference number: 5 (lower is better)
Translates to: EGSLPHFLAHSSPHR*SSFLQKSNHPCLLL
Trigger: GAGTAGGAGGCAAGGGTGGTTGGATTTCTGTAGAAATGAGGAGCAGCGATGCGGTGAGCTGTGAGCTAAGAAGTGGGGTAGGGAACCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS GCA 90 bp TCACCGCATCGCTGCTCCTCATTTCTACAGAAATCCAACCACCCTTaGCTCCTACTCTCTCAGGACAAGTATCCAACCTGGTTGCACCCT +
Preference number: 5 (lower is better)
Translates to: SPHRCSSFLQKSNHP*LLLSQDKYPTWLHP
Trigger: AGGGTGCAACCAGGTTGGATACTTGTCCTGAGAGAGTAGGAGGCAAGGGTGGTTGGATTTCTGTAGAAATGAGGAGCAGCGATGCGGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS-3UTR CAA 90 bp CTGGTTTGGAGAGGTTTATTCTGCAGGGACGTCCTTCAGAGCACAGTGTGGGAGATCTCAGTGATGTTCTaGGTGACTTTTGCTTCCACG +
Preference number: 5 (lower is better)
Translates to: LVWRGLFCRDVLQSTVWEISVMF*VTFAST
Trigger: CGTGGAAGCAAAAGTCACCAAGAACATCACTGAGAT...CTCCCACACTGTGCTCTGAAGGACGTCCCTGCAGAATAAACCTCTCCAAACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS GCA 72 bp GGCCCGGGTCCCCAGCAGCGCCTGCATCATGGCATCTaGAGAGATCCTCACTCTTCGGAGGGTGGGCCGCTT +
Preference number: 6 (lower is better)
Translates to: GPGPQQRLHHGI*RDPHSSEGGPL
Trigger: AAGCGGCCCACCCTCCGAAGAGTGAGGATCTCTGCAGATGCCATGATGCAGGCGCTGCTGGGGACCCGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS CCA 72 bp TCTTGGCGTGTGGCTCGGTGGCATAGGCTCGGTAGTTaGCAGAGGAGCGGCGTCGGACAGGAGCAGGCGCAG +
Preference number: 6 (lower is better)
Translates to: SWRVARWHRLGS*QRSGVGQEQAQ
Trigger: CTGCGCCTGCTCCTGTCCGACGCCGCTCCTCTGCCAACTACCGAGCCTATGCCACCGAGCCACACGCCAAGA
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098859.10
ENSMUST00000140424.8
ENSMUST00000154913.2
CDS CCA 72 bp ATTCCTTGGCCCGGGTCCCCAGCAGCGCCTGCATCATaGCATCTGCAGAGATCCTCACTCTTCGGAGGGTGG +
Preference number: 6 (lower is better)
Translates to: IPWPGSPAAPAS*HLQRSSLFGGW
Trigger: CCACCCTCCGAAGAGTGAGGATCTCTGCAGATGCCATGATGCAGGCGCTGCTGGGGACCCGGGCCAAGGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS CCA 72 bp CCTTGCCTCCTACTCTCTCAGGACAAGTATCCAACCTaGTTGCACCCTCAAGACCCACCGCACCTCTCCCTG +
Preference number: 6 (lower is better)
Translates to: PCLLLSQDKYPT*LHPQDPPHLSL
Trigger: CAGGGAGAGGTGCGGTGGGTCTTGAGGGTGCAACCAGGTTGGATACTTGTCCTGAGAGAGTAGGAGGCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS CAA 90 bp AACCACCCTTGCCTCCTACTCTCTCAGGACAAGTATCCAACCTGGTaGCACCCTCAAGACCCACCGCACCTCTCCCTGTTGAGGTCTCCA +
Preference number: 6 (lower is better)
Translates to: NHPCLLLSQDKYPTW*HPQDPPHLSLLRSP
Trigger: TGGAGACCTCAACAGGGAGAGGTGCGGTGGGTCTTGAGGGTGCAACCAGGTTGGATACTTGTCCTGAGAGAGTAGGAGGCAAGGGTGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS CCA 72 bp TCTGGAGGCGGAGATCTTAGACTTTTTCTTGGCGTGTaGCTCGGTGGCATAGGCTCGGTAGTTGGCAGAGGA +
Preference number: 6 (lower is better)
Translates to: SGGGDLRLFLGV*LGGIGSVVGRG
Trigger: TCCTCTGCCAACTACCGAGCCTATGCCACCGAGCCACACGCCAAGAAAAAGTCTAAGATCTCCGCCTCCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098859.10
ENSMUST00000140424.8
ENSMUST00000154913.2
CDS CAA 90 bp CTCACCGCATCGCTGCTCCTCATTTCTACAGAAATCCAACCACCCTaGCCTCCTACTCTCTCAGGACAAGTATCCAACCTGGTTGCACCC +
Preference number: 6 (lower is better)
Translates to: LTASLLLISTEIQPP*PPTLSGQVSNLVAP
Trigger: GGGTGCAACCAGGTTGGATACTTGTCCTGAGAGAGTAGGAGGCAAGGGTGGTTGGATTTCTGTAGAAATGAGGAGCAGCGATGCGGTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS GCA 72 bp CTACCCCACTTCTTAGCTCACAGCTCACCGCATCGCTaGTCCTCATTTCTACAGAAATCCAACCACCCTTGC +
Preference number: 6 (lower is better)
Translates to: LPHFLAHSSPHR*SSFLQKSNHPC
Trigger: GCAAGGGTGGTTGGATTTCTGTAGAAATGAGGAGCAGCGATGCGGTGAGCTGTGAGCTAAGAAGTGGGGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS GCA 72 bp CGCTGCTCCTCATTTCTACAGAAATCCAACCACCCTTaGCTCCTACTCTCTCAGGACAAGTATCCAACCTGG +
Preference number: 6 (lower is better)
Translates to: RCSSFLQKSNHP*LLLSQDKYPTW
Trigger: CCAGGTTGGATACTTGTCCTGAGAGAGTAGGAGGCAAGGGTGGTTGGATTTCTGTAGAAATGAGGAGCAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS CAA 72 bp TCGCTGCTCCTCATTTCTACAGAAATCCAACCACCCTaGCCTCCTACTCTCTCAGGACAAGTATCCAACCTG +
Preference number: 6 (lower is better)
Translates to: SLLLISTEIQPP*PPTLSGQVSNL
Trigger: CAGGTTGGATACTTGTCCTGAGAGAGTAGGAGGCAAGGGTGGTTGGATTTCTGTAGAAATGAGGAGCAGCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209148.2
CDS GCA 72 bp CTTGCCACGGAGGTCATAGATCTTCTGGGTCAGATCTaGAATCTCAGTGATGTTCTTGGTGACTTTTGCTTC +
Preference number: 6 (lower is better)
Translates to: LATEVIDLLGQI*NLSDVLGDFCF
Trigger: GAAGCAAAAGTCACCAAGAACATCACTGAGATTGCAGATCTGACCCAGAAGATCTATGACCTCCGTGGCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10
CDS CAA 72 bp ATCTTCTGGGTCAGATCTGCAATCTCAGTGATGTTCTaGGTGACTTTTGCTTCCACGTCATATCTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: IFWVRSAISVMF*VTFASTSYLSS
Trigger: TGAAGAGAGATATGACGTGGAAGCAAAAGTCACCAAGAACATCACTGAGATTGCAGATCTGACCCAGAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098859.10