Pregenerated sensors for TNNI2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031097Ensembl transcript IDs: ENSMUST00000105971.8, ENSMUST00000105973.3, ENSMUST00000145287.8, ENSMUST00000149529.8, ENSMUST00000210239.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTCCCCAATGCTAGGGTaGTACTGGGGAAGTGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: RCESFIGARPSTPRLDVGSPMLG*YWGSGQ Trigger: CTGCCCACTTCCCCAGTACCACCCTAGCATTGGGGA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| 3UTR-3UTR CCA 90 bp | AGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGTCCCCAATGCTAGGGTaGTACTGGGGAAGTGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: RDVNPLLERGQVLPDWMLSPMLG*YWGSGQ Trigger: CTGCCCACTTCCCCAGTACCACCCTAGCATTGGGGA...CAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| 3UTR GCA 72 bp | GGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTaGTTCCCCAATGCTAGGGTGGTACTGGGGAAGTGG | + |
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Preference number: 3 (lower is better) Translates to: GARPSTPRLDVG*FPNARVVLGKW Trigger: CCACTTCCCCAGTACCACCCTAGCATTGGGGAAGCACCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| 3UTR CCA 72 bp | AATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTaGATGTTGGGTGCTTCCCCAATGCTAGGGTGGTAC | + |
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Preference number: 3 (lower is better) Translates to: NPLLERGQVLPD*MLGASPMLGWY Trigger: GTACCACCCTAGCATTGGGGAAGCACCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR CCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTGGGTGGGCAAGCAGTaGGTGGGTGGCCACCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGWVGKQ*VGGHPD Trigger: ATCAGGGTGGCCACCCACCCACTGCTTGCCCACCCA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS-3UTR CCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTGCAGAGTTCCTGGGTaGGCAAGCAGTGGGTGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGCRVPG*ASSGWV Trigger: CACCCACCCACTGCTTGCCCACCCAGGAACTCTGCA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS-3UTR CCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGACGCACCCTCCGAAGTaGGGGCCTCTTGAACTTGCC | + |
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Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGTHPPK*GPLELA Trigger: GGCAAGTTCAAGAGGCCCCCACTTCGGAGGGTGCGT...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR TCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGGGTGGGTGGCCACCCTaGTACCTGCACTTCAGACAT | + |
|
Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGGGWPP*YLHFRH Trigger: ATGTCTGAAGTGCAGGTATCAGGGTGGCCACCCACC...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS-3UTR CCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTTCAGACATGGAGCCTaGGATGTGCAGTGGCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGFRHGA*DVQWRA Trigger: TGCCCGCCACTGCACATCCCAGGCTCCATGTCTGAA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR CCA 90 bp | GAAAGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGACGCACCCTCCGAAGTaGGGGCCTCTTGAACTTGCC | + |
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Preference number: 4 (lower is better) Translates to: ERDVNPLLERGQVLPDWMTHPPK*GPLELA Trigger: GGCAAGTTCAAGAGGCCCCCACTTCGGAGGGTGCGT...CATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR TCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTGGCGGGCAGTGTTCTaGCAGGTAGTTCTCCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGWRAVF*QVVLLL Trigger: GAGAAGGAGAACTACCTGTCAGAACACTGCCCGCCA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR GCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGGGCCACCCTGATACCTaGACTTCAGACATGGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGGHPDT*TSDMEP Trigger: AGGCTCCATGTCTGAAGTGCAGGTATCAGGGTGGCC...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS-3UTR CCA 90 bp | AGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGTTCAGACATGGAGCCTaGGATGTGCAGTGGCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: RDVNPLLERGQVLPDWMLFRHGA*DVQWRA Trigger: TGCCCGCCACTGCACATCCCAGGCTCCATGTCTGAA...CAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR TCA 90 bp | AGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGTGGCGGGCAGTGTTCTaGCAGGTAGTTCTCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RDVNPLLERGQVLPDWMLWRAVF*QVVLLL Trigger: GAGAAGGAGAACTACCTGTCAGAACACTGCCCGCCA...CAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR CCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTCTGTGGCCGCTATCTaGAGCATCACACTCTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGSVAAI*SITLFR Trigger: CCTGAAGAGTGTGATGCTCCAGATAGCGGCCACAGA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR GCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTGTCTTCCAGCTCCTTaGTGCTCTTCTGCACCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGCLPAP*CSSAPS Trigger: TGAAGGTGCAGAAGAGCAGCAAGGAGCTGGAAGACA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR GCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTCTTCCGGCCCTCCATaGCAGACTTCTCCTCAATAT | + |
|
Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGSSGPP*QTSPQY Trigger: ATATTGAGGAGAAGTCTGGCATGGAGGGCCGGAAGA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR CCA 90 bp | AGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGTCTGTGGCCGCTATCTaGAGCATCACACTCTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RDVNPLLERGQVLPDWMLSVAAI*SITLFR Trigger: CCTGAAGAGTGTGATGCTCCAGATAGCGGCCACAGA...CAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR GCA 90 bp | GAAAGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTCTTCCGGCCCTCCATaGCAGACTTCTCCTCAATAT | + |
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Preference number: 4 (lower is better) Translates to: ERDVNPLLERGQVLPDWMSSGPP*QTSPQY Trigger: ATATTGAGGAGAAGTCTGGCATGGAGGGCCGGAAGA...CATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR GCA 90 bp | AAGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTTGTCTTCCAGCTCCTTaGTGCTCTTCTGCACCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: KRCESFIGARPSTPRLDVCLPAP*CSSAPS Trigger: TGAAGGTGCAGAAGAGCAGCAAGGAGCTGGAAGACA...AACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR CCA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGAGGTCAAATAGCTTCTaGTTCATGTCTTCCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: RCESFIGARPSTPRLDVGRSNSF*FMSSSS Trigger: GGAGCTGGAAGACATGAACCAGAAGCTATTTGACCT...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS TCA 90 bp | TTTGCAGAGTTCCTGGGTGGGCAAGCAGTGGGTGGGTGGCCACCCTaGTACCTGCACTTCAGACATGGAGCCTGGGATGTGCAGTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: FAEFLGGQAVGGWPP*YLHFRHGAWDVQWR Trigger: CCGCCACTGCACATCCCAGGCTCCATGTCTGAAGTGCAGGTATCAGGGTGGCCACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CCA 90 bp | CAGCCACGTCGATCTTCGCATGCAGTTGTTTGCAGAGTTCCTGGGTaGGCAAGCAGTGGGTGGGTGGCCACCCTGATACCTGCACTTCAG | + |
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Preference number: 5 (lower is better) Translates to: QPRRSSHAVVCRVPG*ASSGWVATLIPALQ Trigger: CTGAAGTGCAGGTATCAGGGTGGCCACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CCA 90 bp | TCTTCAGCCACGTCGATCTTCGCATGCAGTTGTTTGCAGAGTTCCTaGGTGGGCAAGCAGTGGGTGGGTGGCCACCCTGATACCTGCACT | + |
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Preference number: 5 (lower is better) Translates to: SSATSIFACSCLQSS*VGKQWVGGHPDTCT Trigger: AGTGCAGGTATCAGGGTGGCCACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS TCA 90 bp | GCATGGCGTCGGCAGACATACGCACCCTCCGAAGTGGGGGCCTCTTaGACTTGCCCCTCAGGTCAAATAGCTTCTGGTTCATGTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: AWRRQTYAPSEVGAS*TCPSGQIASGSCLP Trigger: TGGAAGACATGAACCAGAAGCTATTTGACCTGAGGGGCAAGTTCAAGAGGCCCCCACTTCGGAGGGTGCGTATGTCTGCCGACGCCATGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 ENSMUST00000145287.8 ENSMUST00000149529.8 ENSMUST00000210239.2 |
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| CDS GCA 90 bp | CATATTTCTCCTCTTCAGCCACGTCGATCTTCGCATGCAGTTGTTTaGAGAGTTCCTGGGTGGGCAAGCAGTGGGTGGGTGGCCACCCTG | + |
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Preference number: 5 (lower is better) Translates to: HISPLQPRRSSHAVV*RVPGWASSGWVATL Trigger: CAGGGTGGCCACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGGAGAAATATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CCA 90 bp | TCTCCTTCTCAGATTCTCGGCGGCTTTCCTCTTTCTCCAGCTCTGTaGCCGCTATCTGGAGCATCACACTCTTCAGGTGCTGTCTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: SPSQILGGFPLSPAL*PLSGASHSSGAVSG Trigger: CCCGGAGACAGCACCTGAAGAGTGTGATGCTCCAGATAGCGGCCACAGAGCTGGAGAAAGAGGAAAGCCGCCGAGAATCTGAGAAGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 ENSMUST00000145287.8 ENSMUST00000149529.8 |
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| CDS-3UTR CAA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGCGAAGTGGGGGCCTCTaGAACTTGCCCCTCAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: RCESFIGARPSTPRLDVGRSGGL*NLPLRS Trigger: TGACCTGAGGGGCAAGTTCAAGAGGCCCCCACTTCG...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS GCA 90 bp | ACCTCCATGTCATATTTCTCCTCTTCAGCCACGTCGATCTTCGCATaGAGTTGTTTGCAGAGTTCCTGGGTGGGCAAGCAGTGGGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: TSMSYFSSSATSIFA*SCLQSSWVGKQWVG Trigger: ACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGGAGAAATATGACATGGAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS-3UTR CAA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTTGACCTGCTTCAGGTaGGCCCTCAGGTCCATGCAC | + |
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Preference number: 5 (lower is better) Translates to: RCESFIGARPSTPRLDVGLTCFR*ALRSMH Trigger: GTGCATGGACCTGAGGGCCAACCTGAAGCAGGTCAA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR CAA 90 bp | AAGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGCCGTGATGGCCCTGTaGCGCTTCTCCTCATCTCCC | + |
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Preference number: 5 (lower is better) Translates to: KRCESFIGARPSTPRLDVAVMAL*RFSSSP Trigger: GGGAGATGAGGAGAAGCGCAACAGGGCCATCACGGC...AACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR CAA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTTCGCATGCAGTTGTTaGCAGAGTTCCTGGGTGGGC | + |
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Preference number: 5 (lower is better) Translates to: RCESFIGARPSTPRLDVGFACSC*QSSWVG Trigger: GCCCACCCAGGAACTCTGCAAACAACTGCATGCGAA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS-3UTR CAA 90 bp | AAGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTCGAAGTGGGGGCCTCTaGAACTTGCCCCTCAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: KRCESFIGARPSTPRLDVRSGGL*NLPLRS Trigger: TGACCTGAGGGGCAAGTTCAAGAGGCCCCCACTTCG...AACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR CAA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGATGTCTTCCAGCTCCTaGCTGCTCTTCTGCACCTTC | + |
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Preference number: 5 (lower is better) Translates to: RCESFIGARPSTPRLDVGMSSSS*LLFCTF Trigger: GAAGGTGCAGAAGAGCAGCAAGGAGCTGGAAGACAT...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR CAA 90 bp | AAGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTTTGACCTGCTTCAGGTaGGCCCTCAGGTCCATGCAC | + |
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Preference number: 5 (lower is better) Translates to: KRCESFIGARPSTPRLDVLTCFR*ALRSMH Trigger: GTGCATGGACCTGAGGGCCAACCTGAAGCAGGTCAA...AACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS-3UTR CAA 90 bp | AGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGTTGGGTCAGTGTCTTCCTTCTaGACCTGCTTCAGGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: RCESFIGARPSTPRLDVGSVSSF*TCFRLA Trigger: GGCCAACCTGAAGCAGGTCAAGAAGGAAGACACTGA...CCCAACATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 |
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| CDS-3UTR CAA 90 bp | GAAAGAGATGTGAATCCTTTATTGGAGCGAGGCCAAGTACTCCCAGACTGGATGATGTCTTCCAGCTCCTaGCTGCTCTTCTGCACCTTC | + |
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Preference number: 5 (lower is better) Translates to: ERDVNPLLERGQVLPDWMMSSSS*LLFCTF Trigger: GAAGGTGCAGAAGAGCAGCAAGGAGCTGGAAGACAT...CATCCAGTCTGGGAGTACTTGGCCTCGCTCCAATAAAGGATTCACATCTCTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105971.8 |
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| CDS GCA 72 bp | GTGGGCAAGCAGTGGGTGGGTGGCCACCCTGATACCTaGACTTCAGACATGGAGCCTGGGATGTGCAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: VGKQWVGGHPDT*TSDMEPGMCSG Trigger: GCCACTGCACATCCCAGGCTCCATGTCTGAAGTGCAGGTATCAGGGTGGCCACCCACCCACTGCTTGCCCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CAA 90 bp | GCGTCGGCAGACATACGCACCCTCCGAAGTGGGGGCCTCTTGAACTaGCCCCTCAGGTCAAATAGCTTCTGGTTCATGTCTTCCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: ASADIRTLRSGGLLN*PLRSNSFWFMSSSS Trigger: GGAGCTGGAAGACATGAACCAGAAGCTATTTGACCTGAGGGGCAAGTTCAAGAGGCCCCCACTTCGGAGGGTGCGTATGTCTGCCGACGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 ENSMUST00000145287.8 ENSMUST00000149529.8 ENSMUST00000210239.2 |
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| CDS GCA 72 bp | CCTCTTCAGCCACGTCGATCTTCGCATGCAGTTGTTTaGAGAGTTCCTGGGTGGGCAAGCAGTGGGTGGGTG | + |
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Preference number: 6 (lower is better) Translates to: PLQPRRSSHAVV*RVPGWASSGWV Trigger: CACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CCA 72 bp | GTTGTTTGCAGAGTTCCTGGGTGGGCAAGCAGTGGGTaGGTGGCCACCCTGATACCTGCACTTCAGACATGG | + |
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Preference number: 6 (lower is better) Translates to: VVCRVPGWASSG*VATLIPALQTW Trigger: CCATGTCTGAAGTGCAGGTATCAGGGTGGCCACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CCA 72 bp | ACGTCGATCTTCGCATGCAGTTGTTTGCAGAGTTCCTaGGTGGGCAAGCAGTGGGTGGGTGGCCACCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: TSIFACSCLQSS*VGKQWVGGHPD Trigger: ATCAGGGTGGCCACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS TCA 72 bp | CGGCAGACATACGCACCCTCCGAAGTGGGGGCCTCTTaGACTTGCCCCTCAGGTCAAATAGCTTCTGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: RQTYAPSEVGAS*TCPSGQIASGS Trigger: TGAACCAGAAGCTATTTGACCTGAGGGGCAAGTTCAAGAGGCCCCCACTTCGGAGGGTGCGTATGTCTGCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 ENSMUST00000145287.8 ENSMUST00000149529.8 ENSMUST00000210239.2 |
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| CDS CAA 72 bp | TCCTCTTCAGCCACGTCGATCTTCGCATGCAGTTGTTaGCAGAGTTCCTGGGTGGGCAAGCAGTGGGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: SSSATSIFACSC*QSSWVGKQWVG Trigger: ACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CAA 72 bp | TCGGCAGACATACGCACCCTCCGAAGTGGGGGCCTCTaGAACTTGCCCCTCAGGTCAAATAGCTTCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: SADIRTLRSGGL*NLPLRSNSFWF Trigger: GAACCAGAAGCTATTTGACCTGAGGGGCAAGTTCAAGAGGCCCCCACTTCGGAGGGTGCGTATGTCTGCCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 ENSMUST00000145287.8 ENSMUST00000149529.8 ENSMUST00000210239.2 |
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| CDS CAA 90 bp | TCATATTTCTCCTCTTCAGCCACGTCGATCTTCGCATGCAGTTGTTaGCAGAGTTCCTGGGTGGGCAAGCAGTGGGTGGGTGGCCACCCT | + |
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Preference number: 6 (lower is better) Translates to: SYFSSSATSIFACSC*QSSWVGKQWVGGHP Trigger: AGGGTGGCCACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGGAGAAATATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CAA 90 bp | CATGTCATATTTCTCCTCTTCAGCCACGTCGATCTTCGCATGCAGTaGTTTGCAGAGTTCCTGGGTGGGCAAGCAGTGGGTGGGTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: HVIFLLFSHVDLRMQ*FAEFLGGQAVGGWP Trigger: TGGCCACCCACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGGAGAAATATGACATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CAA 72 bp | TTTCTCCTCTTCAGCCACGTCGATCTTCGCATGCAGTaGTTTGCAGAGTTCCTGGGTGGGCAAGCAGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: FLLFSHVDLRMQ*FAEFLGGQAVG Trigger: ACCCACTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGGAGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS CAA 72 bp | GACATACGCACCCTCCGAAGTGGGGGCCTCTTGAACTaGCCCCTCAGGTCAAATAGCTTCTGGTTCATGTCT | + |
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Preference number: 6 (lower is better) Translates to: DIRTLRSGGLLN*PLRSNSFWFMS Trigger: AGACATGAACCAGAAGCTATTTGACCTGAGGGGCAAGTTCAAGAGGCCCCCACTTCGGAGGGTGCGTATGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000105971.8 ENSMUST00000105973.3 ENSMUST00000145287.8 ENSMUST00000149529.8 ENSMUST00000210239.2 |
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| CDS GCA 72 bp | TCATATTTCTCCTCTTCAGCCACGTCGATCTTCGCATaGAGTTGTTTGCAGAGTTCCTGGGTGGGCAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SYFSSSATSIFA*SCLQSSWVGKQ Trigger: CTGCTTGCCCACCCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGGAGAAATATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105973.3 |
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| CDS GCA 72 bp | TCATATTTCTCCTCTTCAGCCACGTCGATCTTCGCATaGAGTTGTTTGCAGAGTTCCTGCACTTCAGACATG | + |
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Preference number: 6 (lower is better) Translates to: SYFSSSATSIFA*SCLQSSCTSDM Trigger: CATGTCTGAAGTGCAGGAACTCTGCAAACAACTGCATGCGAAGATCGACGTGGCTGAAGAGGAGAAATATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000105971.8 ENSMUST00000145287.8 ENSMUST00000149529.8 ENSMUST00000210239.2 |
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