Pregenerated sensors for TNNC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017300Ensembl transcript IDs: ENSMUST00000103095.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCCAAAGGAGCAGCCTTTCCCGTGTGAGGCAGGGAAAGCAAAGGTaGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGA | + |
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Preference number: 1 (lower is better) Translates to: AQRSSLSRVRQGKQR*SCPRPGDLQSGWTR Trigger: TCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCTCCACCTTTGCTTTCCCTGCCTCACACGGGAAAGGCTGCTCCTTTGGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| 3UTR CCA 72 bp | AGCAGCCTTTCCCGTGTGAGGCAGGGAAAGCAAAGGTaGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGA | + |
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Preference number: 3 (lower is better) Translates to: SSLSRVRQGKQR*SCPRPGDLQSG Trigger: TCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCTCCACCTTTGCTTTCCCTGCCTCACACGGGAAAGGCTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR TCA 90 bp | TCACAGAGCCCAAAGGAGCAGCCTTTCCCGTGTGAGGCAGGGAAAGCAAAGGTGCGATCATCTCCTCGCTaGGGTAGGACCTGGCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: SQSPKEQPFPCEAGKAKVRSSPR*GRTWPQ Trigger: CTGAGGCCAGGTCCTACCTCAGCGAGGAGATGATCG...CACCTTTGCTTTCCCTGCCTCACACGGGAAAGGCTGCTCCTTTGGGCTCTGTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR TCA 90 bp | GGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACGTCCACCTCCTCGATaGTGGCATCCAATTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: GGAAHAQGTCSLDGHEQRRPPPR*WHPIPL Trigger: AAGAGGAATTGGATGCCATCATCGAGGAGGTGGACG...TCTTTGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCTCCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR GCA 90 bp | AGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTCTTCTGTCACATaGTCCCCAGAAGCCCGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SCPRPGDLQSGWTRTKTVSSSVT*SPEARK Trigger: TTTCCGGGCTTCTGGGGAGCATGTGACAGAAGAGGA...GACGGTCTTTGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR CCA 90 bp | GAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTGCATCCTCTTTCATCTaGCGCACCATCATGACCAAG | + |
|
Preference number: 4 (lower is better) Translates to: ELPTPRGPAVWMDTNKDRASSFI*RTIMTK Trigger: CTTGGTCATGATGGTGCGCCAGATGAAAGAGGATGC...ACGGTCTTTGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR TCA 90 bp | AAAGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAATGTCAAAGGCAGCCTTaGACTCAGCGATCATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KGGAAHAQGTCSLDGHEQCQRQP*TQRSSP Trigger: AGGAGATGATCGCTGAGTTCAAGGCTGCCTTTGACA...TTGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCTCCACCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR CCA 90 bp | TCACAGAGCCCAAAGGAGCAGCCTTTCCCGTGTGAGGCAGGGAAAGCAAAGGTGCATCCAATTCCTCTTTaGTGGGTGTCTGCCCTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SQSPKEQPFPCEAGKAKVHPIPL*WVSALA Trigger: TGCTAGGGCAGACACCCACCAAAGAGGAATTGGATG...CACCTTTGCTTTCCCTGCCTCACACGGGAAAGGCTGCTCCTTTGGGCTCTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR CCA 90 bp | TTTATTCCTTCCAGTCACAGAGCCCAAAGGAGCAGCCTTTCCCGTGTGAGGCAGCCAATTCCTCTTTGGTaGGTGTCTGCCCTAGCATCC | + |
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Preference number: 4 (lower is better) Translates to: FIPSSHRAQRSSLSRVRQPIPLW*VSALAS Trigger: GGATGCTAGGGCAGACACCCACCAAAGAGGAATTGG...CTGCCTCACACGGGAAAGGCTGCTCCTTTGGGCTCTGTGACTGGAAGGAATAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR GCA 90 bp | TCACAGAGCCCAAAGGAGCAGCCTTTCCCGTGTGAGGCAGGGAAAGCAAAGGTGACTCATCAAAGTCAATaGGGCCGTCGTTGTTTTTAT | + |
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Preference number: 4 (lower is better) Translates to: SQSPKEQPFPCEAGKAKVTHQSQ*GRRCFY Trigger: ATAAAAACAACGACGGCCGCATTGACTTTGATGAGT...CACCTTTGCTTTCCCTGCCTCACACGGGAAAGGCTGCTCCTTTGGGCTCTGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR TCA 90 bp | TTTACATTGTCAACTTTTATTCCTTCCAGTCACAGAGCCCAAAGGAGCAGCCTTTCTGGCGCACCATCATaGCCAAGAACTCTTCAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: FTLSTFIPSSHRAQRSSLSGAPS*PRTLQS Trigger: ACTTTGAAGAGTTCTTGGTCATGATGGTGCGCCAGA...AAGGCTGCTCCTTTGGGCTCTGTGACTGGAAGGAATAAAAGTTGACAATGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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| CDS-3UTR CAA 90 bp | GAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTATGTCAAAGGCAGCCTaGAACTCAGCGATCATCTCC | + |
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Preference number: 5 (lower is better) Translates to: ELPTPRGPAVWMDTNKDRMSKAA*NSAIIS Trigger: GGAGATGATCGCTGAGTTCAAGGCTGCCTTTGACAT...ACGGTCTTTGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103095.5 |
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