Pregenerated sensors for TNNC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091898Ensembl transcript IDs: ENSMUST00000169169.8, ENSMUST00000170268.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR GCA 90 bp | CAAGGTTCAAGGACACAGGCAGGCTCAGAGTCTAGAGAGCCCAGCTaGACTCCTACCACGGGGTCTGGGTGGAGGGGGAGAACAGGCGCA | + |
Preference number: 1 (lower is better) Translates to: QGSRTQAGSESREPS*TPTTGSGWRGRTGA Trigger: TGCGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGAGCCTGCCTGTGTCCTTGAACCTTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
3UTR CCA 90 bp | TCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTaGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCT | + |
Preference number: 1 (lower is better) Translates to: SESREPSCTPTTGSG*RGRTGAGNRARPAS Trigger: AGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
3UTR GCA 90 bp | TACCACGGGGTCTGGGTGGAGGGGGAGAACAGGCGCAGGCAACCGTaGAAGACCAGCATCTACTCCACACCCTTCATGAATTCCAGGAAC | + |
Preference number: 1 (lower is better) Translates to: YHGVWVEGENRRRQP*KTSIYSTPFMNSRN Trigger: GTTCCTGGAATTCATGAAGGGTGTGGAGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
3UTR CCA 90 bp | GGCCTCTGGGGAGCAAGGATTTATTTGCGTTCCCCAGGACAGGAATaGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAAGGACACAGGCA | + |
Preference number: 1 (lower is better) Translates to: GLWGARIYLRSPGQE*GEKVRKGQGSRTQA Trigger: TGCCTGTGTCCTTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAAATAAATCCTTGCTCCCCAGAGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
3UTR TCA 90 bp | GGCGCAGGCAACCGTGCAAGACCAGCATCTACTCCACACCCTTCATaGATTCCAGGAACTCGTCATAGTCAATTCGGCCATCGTTGTTCT | + |
Preference number: 1 (lower is better) Translates to: GAGNRARPASTPHPS*IPGTRHSQFGHRCS Trigger: AGAACAACGATGGCCGAATTGACTATGACGAGTTCCTGGAATTCATGAAGGGTGTGGAGTAGATGCTGGTCTTGCACGGTTGCCTGCGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
3UTR-3UTR TCA 90 bp | TCTGGGTGGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCTACTTGTCACCGTCCTTCATaGGCTCTTCAATGTCATCTT | + |
Preference number: 2 (lower is better) Translates to: SGWRGRTGAGNRARPASTCHRPS*ALQCHL Trigger: AAGATGACATTGAAGAGCTCATGAAGGACGGTGACA...AGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
3UTR CCA 72 bp | AGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTaGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGA | + |
Preference number: 3 (lower is better) Translates to: REPSCTPTTGSG*RGRTGAGNRAR Trigger: TCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
3UTR CCA 72 bp | GGAGCAAGGATTTATTTGCGTTCCCCAGGACAGGAATaGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAAGG | + |
Preference number: 3 (lower is better) Translates to: GARIYLRSPGQE*GEKVRKGQGSR Trigger: CCTTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAAATAAATCCTTGCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
3UTR TCA 72 bp | AACCGTGCAAGACCAGCATCTACTCCACACCCTTCATaGATTCCAGGAACTCGTCATAGTCAATTCGGCCAT | + |
Preference number: 3 (lower is better) Translates to: NRARPASTPHPS*IPGTRHSQFGH Trigger: ATGGCCGAATTGACTATGACGAGTTCCTGGAATTCATGAAGGGTGTGGAGTAGATGCTGGTCTTGCACGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
CDS-3UTR TCA 90 bp | TCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGCCAGCTCCTTGGTGCTaGTGCAGCCATCCTCCGCGC | + |
Preference number: 4 (lower is better) Translates to: SESREPSCTPTTGSGWRGPAPWC*CSHPPR Trigger: GCGCGGAGGATGGCTGCATCAGCACCAAGGAGCTGG...CCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS-3UTR GCA 90 bp | GAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGAGAACAGGCGCCTCAGACTTCCCTTTaGTGTCGTCCTTCATGCACC | + |
Preference number: 4 (lower is better) Translates to: ESPAALLPRGLGGGGEQAPQTSL*CRPSCT Trigger: GGTGCATGAAGGACGACAGCAAAGGGAAGTCTGAGG...CGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS-3UTR CCA 90 bp | TCTGGGTGGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCTACTGCAGCTCCTCAGGTGTaGGGTTCTGGCCCAGCATCC | + |
Preference number: 4 (lower is better) Translates to: SGWRGRTGAGNRARPASTAAPQV*GSGPAS Trigger: GGATGCTGGGCCAGAACCCCACACCTGAGGAGCTGC...AGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
CDS-3UTR GCA 90 bp | CTGGGTGGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCTACTCTCGTCAATCATCTCCTaGAGCTCCTCAGGTGTGGGG | + |
Preference number: 4 (lower is better) Translates to: LGGGGEQAQATVQDQHLLSSIIS*SSSGVG Trigger: CCCCACACCTGAGGAGCTGCAGGAGATGATTGACGA...GAGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
CDS-3UTR CCA 90 bp | TTGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAGCAGCTCCTCAGGTGTaGGGTTCTGGCCCAGCATCC | + |
Preference number: 4 (lower is better) Translates to: LRSPGQEWGEKVRKGQGSAAPQV*GSGPAS Trigger: GGATGCTGGGCCAGAACCCCACACCTGAGGAGCTGC...TGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS-3UTR TCA 90 bp | TCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGTGCACCGAACCATCATaGCAAGAAACTCATCGAAGT | + |
Preference number: 4 (lower is better) Translates to: SESREPSCTPTTGSGWRGCTEPS*QETHRS Trigger: ACTTCGATGAGTTTCTTGTCATGATGGTTCGGTGCA...CCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS-3UTR GCA 90 bp | TGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAATCGTCAATCATCTCCTaGAGCTCCTCAGGTGTGGGG | + |
Preference number: 4 (lower is better) Translates to: CVPQDRNGERKSGRAKVQSSIIS*SSSGVG Trigger: CCCCACACCTGAGGAGCTGCAGGAGATGATTGACGA...TTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS-3UTR GCA 90 bp | CTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGAGAACAGCGTTTTTGTCAAACATaGGGAAGAGATCCGACAGCT | + |
Preference number: 4 (lower is better) Translates to: LESPAALLPRGLGGGGEQRFCQT*GRDPTA Trigger: AGCTGTCGGATCTCTTCCGCATGTTTGACAAAAACG...CTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS-3UTR TCA 90 bp | TTCAATGTCATCTTCCGTAATGGTCTCACCTGTGGCCTGCAGCATCATCTTCAGCCAGCTCCTTGGTGCTaGTGCAGCCATCCTCCGCGC | + |
Preference number: 4 (lower is better) Translates to: FNVIFRNGLTCGLQHHLQPAPWC*CSHPPR Trigger: GCGCGGAGGATGGCTGCATCAGCACCAAGGAGCTGG...CTGAAGATGATGCTGCAGGCCACAGGTGAGACCATTACGGAAGATGACATTGAA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
CDS-3UTR GCA 90 bp | TTGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAGTCTCACCTGTGGCCTaGAGCATCATCTTCAGCTCA | + |
Preference number: 4 (lower is better) Translates to: LRSPGQEWGEKVRKGQGSVSPVA*SIIFSS Trigger: TGAGCTGAAGATGATGCTGCAGGCCACAGGTGAGAC...TGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS-3UTR GCA 90 bp | TCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGTTGAACTCATTCTTCTaGTCCTCTGTCAACTGTTCT | + |
Preference number: 4 (lower is better) Translates to: SESREPSCTPTTGSGWRGLNSFF*SSVNCS Trigger: AGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAA...CCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS-3UTR TCA 90 bp | ATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAAGGACACAGGCAGGCTCAGAACTCCACACCCTTCATaGATTCCAGGAACTCGTCAT | + |
Preference number: 4 (lower is better) Translates to: MGRESPEGPRFKDTGRLRTPHPS*IPGTRH Trigger: ATGACGAGTTCCTGGAATTCATGAAGGGTGTGGAGT...TCTGAGCCTGCCTGTGTCCTTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS-3UTR TCA 90 bp | GGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCTACTCCACACCCTTCATTATCAAAGGCAGCCTTaGACTCATTCTTCTGCTCCT | + |
Preference number: 4 (lower is better) Translates to: GEQAQATVQDQHLLHTLHYQRQP*THSSAP Trigger: AGGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATA...ATGAAGGGTGTGGAGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170268.2 |
||
CDS-3UTR TCA 90 bp | TTGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCATGTCACCGTCCTTCATaGGCTCTTCAATGTCATCTT | + |
Preference number: 4 (lower is better) Translates to: LRSPGQEWGEKVRKGQGSCHRPS*ALQCHL Trigger: AAGATGACATTGAAGAGCTCATGAAGGACGGTGACA...TGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS-3UTR TCA 90 bp | ATACCAGGCCTCTGGGGAGCAAGGATTTATTTGCGTTCCCCAGGACAGGAATGGTATCAAAGGCAGCCTTaGACTCATTCTTCTGCTCCT | + |
Preference number: 4 (lower is better) Translates to: IPGLWGARIYLRSPGQEWYQRQP*THSSAP Trigger: AGGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATA...CCATTCCTGTCCTGGGGAACGCAAATAAATCCTTGCTCCCCAGAGGCCTGGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS-3UTR GCA 90 bp | TGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAATTGAACTCATTCTTCTaGTCCTCTGTCAACTGTTCT | + |
Preference number: 4 (lower is better) Translates to: CVPQDRNGERKSGRAKVQLNSFF*SSVNCS Trigger: AGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAA...TTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS-3UTR CAA 90 bp | GGCTCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGATATCAAAGGCAGCCTaGAACTCATTCTTCTGCTCC | + |
Preference number: 5 (lower is better) Translates to: GSESREPSCTPTTGSGWRISKAA*NSFFCS Trigger: GGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATAT...CCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS-3UTR CAA 90 bp | CTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGAGAACAGATATCAAAGGCAGCCTaGAACTCATTCTTCTGCTCC | + |
Preference number: 5 (lower is better) Translates to: LESPAALLPRGLGGGGEQISKAA*NSFFCS Trigger: GGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATAT...CTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS-3UTR CAA 90 bp | CCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAAGGACACAGCGGCCATCGTTGTTCTaGTCACCGTCCTTCATGAGC | + |
Preference number: 5 (lower is better) Translates to: PGQEWGEKVRKGQGSRTQRPSLF*SPSFMS Trigger: GCTCATGAAGGACGGTGACAAGAACAACGATGGCCG...CTGTGTCCTTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |
||
CDS TCA 90 bp | TGCAGCCATCCTCCGCGCCCAGGACAAAGATATCAAAGGCAGCCTTaGACTCATTCTTCTGCTCCTCTGTCAACTGTTCTACCGCAGCTT | + |
Preference number: 5 (lower is better) Translates to: CSHPPRPGQRYQRQP*THSSAPLSTVLPQL Trigger: AAGCTGCGGTAGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATATCTTTGTCCTGGGCGCGGAGGATGGCTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS TCA 90 bp | CCTCAGACTTCCCTTTGCTGTCGTCCTTCATGCACCGAACCATCATaGCAAGAAACTCATCGAAGTCCACTGTGCCACTGCCATCCTCGT | + |
Preference number: 5 (lower is better) Translates to: PQTSLCCRPSCTEPS*QETHRSPLCHCHPR Trigger: ACGAGGATGGCAGTGGCACAGTGGACTTCGATGAGTTTCTTGTCATGATGGTTCGGTGCATGAAGGACGACAGCAAAGGGAAGTCTGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS TCA 72 bp | TCCCTTTGCTGTCGTCCTTCATGCACCGAACCATCATaGCAAGAAACTCATCGAAGTCCACTGTGCCACTGC | + |
Preference number: 6 (lower is better) Translates to: SLCCRPSCTEPS*QETHRSPLCHC Trigger: GCAGTGGCACAGTGGACTTCGATGAGTTTCTTGTCATGATGGTTCGGTGCATGAAGGACGACAGCAAAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS TCA 72 bp | CCTCCGCGCCCAGGACAAAGATATCAAAGGCAGCCTTaGACTCATTCTTCTGCTCCTCTGTCAACTGTTCTA | + |
Preference number: 6 (lower is better) Translates to: PPRPGQRYQRQP*THSSAPLSTVL Trigger: TAGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATATCTTTGTCCTGGGCGCGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000169169.8 ENSMUST00000170268.2 |
||
CDS GCA 72 bp | CTAAGTCAATGTAGCCATCAGCGTTTTTGTCAAACATaGGGAAGAGATCCGACAGCTCCTCCTCAGACTTCC | + |
Preference number: 6 (lower is better) Translates to: LSQCSHQRFCQT*GRDPTAPPQTS Trigger: GGAAGTCTGAGGAGGAGCTGTCGGATCTCTTCCGCATGTTTGACAAAAACGCTGATGGCTACATTGACTTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169169.8 |