RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNNC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091898

Ensembl transcript IDs: ENSMUST00000169169.8, ENSMUST00000170268.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAAGGTTCAAGGACACAGGCAGGCTCAGAGTCTAGAGAGCCCAGCTaGACTCCTACCACGGGGTCTGGGTGGAGGGGGAGAACAGGCGCA +
Preference number: 1 (lower is better)
Translates to: QGSRTQAGSESREPS*TPTTGSGWRGRTGA
Trigger: TGCGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGAGCCTGCCTGTGTCCTTGAACCTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
3UTR CCA 90 bp TCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTaGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCT +
Preference number: 1 (lower is better)
Translates to: SESREPSCTPTTGSG*RGRTGAGNRARPAS
Trigger: AGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
3UTR GCA 90 bp TACCACGGGGTCTGGGTGGAGGGGGAGAACAGGCGCAGGCAACCGTaGAAGACCAGCATCTACTCCACACCCTTCATGAATTCCAGGAAC +
Preference number: 1 (lower is better)
Translates to: YHGVWVEGENRRRQP*KTSIYSTPFMNSRN
Trigger: GTTCCTGGAATTCATGAAGGGTGTGGAGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
3UTR CCA 90 bp GGCCTCTGGGGAGCAAGGATTTATTTGCGTTCCCCAGGACAGGAATaGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAAGGACACAGGCA +
Preference number: 1 (lower is better)
Translates to: GLWGARIYLRSPGQE*GEKVRKGQGSRTQA
Trigger: TGCCTGTGTCCTTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAAATAAATCCTTGCTCCCCAGAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
3UTR TCA 90 bp GGCGCAGGCAACCGTGCAAGACCAGCATCTACTCCACACCCTTCATaGATTCCAGGAACTCGTCATAGTCAATTCGGCCATCGTTGTTCT +
Preference number: 1 (lower is better)
Translates to: GAGNRARPASTPHPS*IPGTRHSQFGHRCS
Trigger: AGAACAACGATGGCCGAATTGACTATGACGAGTTCCTGGAATTCATGAAGGGTGTGGAGTAGATGCTGGTCTTGCACGGTTGCCTGCGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
3UTR-3UTR TCA 90 bp TCTGGGTGGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCTACTTGTCACCGTCCTTCATaGGCTCTTCAATGTCATCTT +
Preference number: 2 (lower is better)
Translates to: SGWRGRTGAGNRARPASTCHRPS*ALQCHL
Trigger: AAGATGACATTGAAGAGCTCATGAAGGACGGTGACA...AGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
3UTR CCA 72 bp AGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTaGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGA +
Preference number: 3 (lower is better)
Translates to: REPSCTPTTGSG*RGRTGAGNRAR
Trigger: TCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
3UTR CCA 72 bp GGAGCAAGGATTTATTTGCGTTCCCCAGGACAGGAATaGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAAGG +
Preference number: 3 (lower is better)
Translates to: GARIYLRSPGQE*GEKVRKGQGSR
Trigger: CCTTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAAATAAATCCTTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
3UTR TCA 72 bp AACCGTGCAAGACCAGCATCTACTCCACACCCTTCATaGATTCCAGGAACTCGTCATAGTCAATTCGGCCAT +
Preference number: 3 (lower is better)
Translates to: NRARPASTPHPS*IPGTRHSQFGH
Trigger: ATGGCCGAATTGACTATGACGAGTTCCTGGAATTCATGAAGGGTGTGGAGTAGATGCTGGTCTTGCACGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
CDS-3UTR TCA 90 bp TCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGCCAGCTCCTTGGTGCTaGTGCAGCCATCCTCCGCGC +
Preference number: 4 (lower is better)
Translates to: SESREPSCTPTTGSGWRGPAPWC*CSHPPR
Trigger: GCGCGGAGGATGGCTGCATCAGCACCAAGGAGCTGG...CCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS-3UTR GCA 90 bp GAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGAGAACAGGCGCCTCAGACTTCCCTTTaGTGTCGTCCTTCATGCACC +
Preference number: 4 (lower is better)
Translates to: ESPAALLPRGLGGGGEQAPQTSL*CRPSCT
Trigger: GGTGCATGAAGGACGACAGCAAAGGGAAGTCTGAGG...CGCCTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS-3UTR CCA 90 bp TCTGGGTGGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCTACTGCAGCTCCTCAGGTGTaGGGTTCTGGCCCAGCATCC +
Preference number: 4 (lower is better)
Translates to: SGWRGRTGAGNRARPASTAAPQV*GSGPAS
Trigger: GGATGCTGGGCCAGAACCCCACACCTGAGGAGCTGC...AGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
CDS-3UTR GCA 90 bp CTGGGTGGAGGGGGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCTACTCTCGTCAATCATCTCCTaGAGCTCCTCAGGTGTGGGG +
Preference number: 4 (lower is better)
Translates to: LGGGGEQAQATVQDQHLLSSIIS*SSSGVG
Trigger: CCCCACACCTGAGGAGCTGCAGGAGATGATTGACGA...GAGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCCCCCTCCACCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
CDS-3UTR CCA 90 bp TTGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAGCAGCTCCTCAGGTGTaGGGTTCTGGCCCAGCATCC +
Preference number: 4 (lower is better)
Translates to: LRSPGQEWGEKVRKGQGSAAPQV*GSGPAS
Trigger: GGATGCTGGGCCAGAACCCCACACCTGAGGAGCTGC...TGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS-3UTR TCA 90 bp TCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGTGCACCGAACCATCATaGCAAGAAACTCATCGAAGT +
Preference number: 4 (lower is better)
Translates to: SESREPSCTPTTGSGWRGCTEPS*QETHRS
Trigger: ACTTCGATGAGTTTCTTGTCATGATGGTTCGGTGCA...CCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS-3UTR GCA 90 bp TGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAATCGTCAATCATCTCCTaGAGCTCCTCAGGTGTGGGG +
Preference number: 4 (lower is better)
Translates to: CVPQDRNGERKSGRAKVQSSIIS*SSSGVG
Trigger: CCCCACACCTGAGGAGCTGCAGGAGATGATTGACGA...TTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS-3UTR GCA 90 bp CTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGAGAACAGCGTTTTTGTCAAACATaGGGAAGAGATCCGACAGCT +
Preference number: 4 (lower is better)
Translates to: LESPAALLPRGLGGGGEQRFCQT*GRDPTA
Trigger: AGCTGTCGGATCTCTTCCGCATGTTTGACAAAAACG...CTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS-3UTR TCA 90 bp TTCAATGTCATCTTCCGTAATGGTCTCACCTGTGGCCTGCAGCATCATCTTCAGCCAGCTCCTTGGTGCTaGTGCAGCCATCCTCCGCGC +
Preference number: 4 (lower is better)
Translates to: FNVIFRNGLTCGLQHHLQPAPWC*CSHPPR
Trigger: GCGCGGAGGATGGCTGCATCAGCACCAAGGAGCTGG...CTGAAGATGATGCTGCAGGCCACAGGTGAGACCATTACGGAAGATGACATTGAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
CDS-3UTR GCA 90 bp TTGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAGTCTCACCTGTGGCCTaGAGCATCATCTTCAGCTCA +
Preference number: 4 (lower is better)
Translates to: LRSPGQEWGEKVRKGQGSVSPVA*SIIFSS
Trigger: TGAGCTGAAGATGATGCTGCAGGCCACAGGTGAGAC...TGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS-3UTR GCA 90 bp TCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGTTGAACTCATTCTTCTaGTCCTCTGTCAACTGTTCT +
Preference number: 4 (lower is better)
Translates to: SESREPSCTPTTGSGWRGLNSFF*SSVNCS
Trigger: AGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAA...CCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS-3UTR TCA 90 bp ATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAAGGACACAGGCAGGCTCAGAACTCCACACCCTTCATaGATTCCAGGAACTCGTCAT +
Preference number: 4 (lower is better)
Translates to: MGRESPEGPRFKDTGRLRTPHPS*IPGTRH
Trigger: ATGACGAGTTCCTGGAATTCATGAAGGGTGTGGAGT...TCTGAGCCTGCCTGTGTCCTTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS-3UTR TCA 90 bp GGAGAACAGGCGCAGGCAACCGTGCAAGACCAGCATCTACTCCACACCCTTCATTATCAAAGGCAGCCTTaGACTCATTCTTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: GEQAQATVQDQHLLHTLHYQRQP*THSSAP
Trigger: AGGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATA...ATGAAGGGTGTGGAGTAGATGCTGGTCTTGCACGGTTGCCTGCGCCTGTTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170268.2
CDS-3UTR TCA 90 bp TTGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCATGTCACCGTCCTTCATaGGCTCTTCAATGTCATCTT +
Preference number: 4 (lower is better)
Translates to: LRSPGQEWGEKVRKGQGSCHRPS*ALQCHL
Trigger: AAGATGACATTGAAGAGCTCATGAAGGACGGTGACA...TGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS-3UTR TCA 90 bp ATACCAGGCCTCTGGGGAGCAAGGATTTATTTGCGTTCCCCAGGACAGGAATGGTATCAAAGGCAGCCTTaGACTCATTCTTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: IPGLWGARIYLRSPGQEWYQRQP*THSSAP
Trigger: AGGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATA...CCATTCCTGTCCTGGGGAACGCAAATAAATCCTTGCTCCCCAGAGGCCTGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS-3UTR GCA 90 bp TGCGTTCCCCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAATTGAACTCATTCTTCTaGTCCTCTGTCAACTGTTCT +
Preference number: 4 (lower is better)
Translates to: CVPQDRNGERKSGRAKVQLNSFF*SSVNCS
Trigger: AGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAA...TTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGGGGAACGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS-3UTR CAA 90 bp GGCTCAGAGTCTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGATATCAAAGGCAGCCTaGAACTCATTCTTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: GSESREPSCTPTTGSGWRISKAA*NSFFCS
Trigger: GGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATAT...CCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAGACTCTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS-3UTR CAA 90 bp CTAGAGAGCCCAGCTGCACTCCTACCACGGGGTCTGGGTGGAGGGGGAGAACAGATATCAAAGGCAGCCTaGAACTCATTCTTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: LESPAALLPRGLGGGGEQISKAA*NSFFCS
Trigger: GGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATAT...CTGTTCTCCCCCTCCACCCAGACCCCGTGGTAGGAGTGCAGCTGGGCTCTCTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS-3UTR CAA 90 bp CCAGGACAGGAATGGGGAGAGAAAGTCCGGAAGGGCCAAGGTTCAAGGACACAGCGGCCATCGTTGTTCTaGTCACCGTCCTTCATGAGC +
Preference number: 5 (lower is better)
Translates to: PGQEWGEKVRKGQGSRTQRPSLF*SPSFMS
Trigger: GCTCATGAAGGACGGTGACAAGAACAACGATGGCCG...CTGTGTCCTTGAACCTTGGCCCTTCCGGACTTTCTCTCCCCATTCCTGTCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8
CDS TCA 90 bp TGCAGCCATCCTCCGCGCCCAGGACAAAGATATCAAAGGCAGCCTTaGACTCATTCTTCTGCTCCTCTGTCAACTGTTCTACCGCAGCTT +
Preference number: 5 (lower is better)
Translates to: CSHPPRPGQRYQRQP*THSSAPLSTVLPQL
Trigger: AAGCTGCGGTAGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATATCTTTGTCCTGGGCGCGGAGGATGGCTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS TCA 90 bp CCTCAGACTTCCCTTTGCTGTCGTCCTTCATGCACCGAACCATCATaGCAAGAAACTCATCGAAGTCCACTGTGCCACTGCCATCCTCGT +
Preference number: 5 (lower is better)
Translates to: PQTSLCCRPSCTEPS*QETHRSPLCHCHPR
Trigger: ACGAGGATGGCAGTGGCACAGTGGACTTCGATGAGTTTCTTGTCATGATGGTTCGGTGCATGAAGGACGACAGCAAAGGGAAGTCTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS TCA 72 bp TCCCTTTGCTGTCGTCCTTCATGCACCGAACCATCATaGCAAGAAACTCATCGAAGTCCACTGTGCCACTGC +
Preference number: 6 (lower is better)
Translates to: SLCCRPSCTEPS*QETHRSPLCHC
Trigger: GCAGTGGCACAGTGGACTTCGATGAGTTTCTTGTCATGATGGTTCGGTGCATGAAGGACGACAGCAAAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS TCA 72 bp CCTCCGCGCCCAGGACAAAGATATCAAAGGCAGCCTTaGACTCATTCTTCTGCTCCTCTGTCAACTGTTCTA +
Preference number: 6 (lower is better)
Translates to: PPRPGQRYQRQP*THSSAPLSTVL
Trigger: TAGAACAGTTGACAGAGGAGCAGAAGAATGAGTTCAAGGCTGCCTTTGATATCTTTGTCCTGGGCGCGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000169169.8
ENSMUST00000170268.2
CDS GCA 72 bp CTAAGTCAATGTAGCCATCAGCGTTTTTGTCAAACATaGGGAAGAGATCCGACAGCTCCTCCTCAGACTTCC +
Preference number: 6 (lower is better)
Translates to: LSQCSHQRFCQT*GRDPTAPPQTS
Trigger: GGAAGTCTGAGGAGGAGCTGTCGGATCTCTTCCGCATGTTTGACAAAAACGCTGATGGCTACATTGACTTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169169.8