Pregenerated sensors for TNMD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031250Ensembl transcript IDs: ENSMUST00000033602.9
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGAGTAGCATGAGACTCTCCCAAGCATaGGGGCCACCCACCAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: DRLLGGKCLIGRNSWSSMRLSQA*GPPTSC Trigger: GCAACTGGTGGGTGGCCCGCATGCTTGGGAGAGTCT...CATGCTACTCCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CCA 90 bp | GATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGAGTAGCATGCCTCGCTTGCTTGTCTaGTGTGGCGGGTCTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: DRLLGGKCLIGRNSWSSMPRLLV*CGGSSP Trigger: TGGAGAAGACCCGCCACACCAGACAAGCAAGCGAGG...CATGCTACTCCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CCA 90 bp | AAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGAGTAGCCTTGCTTGTCTGGTGTaGCGGGTCTTCTCCACCTTC | + |
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Preference number: 4 (lower is better) Translates to: KDRLLGGKCLIGRNSWSSLACLV*RVFSTF Trigger: GAAGGTGGAGAAGACCCGCCACACCAGACAAGCAAG...GCTACTCCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR GCA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGTGCGGGACCACCCATTaGTCATTCTGGTCAATCCCC | + |
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Preference number: 4 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWCGTTH*SFWSIP Trigger: GGGGATTGACCAGAATGAGCAATGGGTGGTCCCGCA...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR GCA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGTTCTCCACCTTCACTTaGGGGACCACCCATTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWFSTFT*GTTHCS Trigger: TGAGCAATGGGTGGTCCCGCAAGTGAAGGTGGAGAA...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR GCA 90 bp | GATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGAGTAGCATGTCTTCTTCTCGCCGTTaGTGTAGAAAGTGTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: DRLLGGKCLIGRNSWSSMSSSRR*CRKCAP Trigger: TGGAGCACACTTTCTACAGCAACGGCGAGAAGAAGA...CATGCTACTCCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR TCA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGTCTGCATTTAGAATGTaGCAGCCCTCACAGTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWSAFRM*QPSQFS Trigger: AGAGAACTGTGAGGGCTGTCACATTCTAAATGCAGA...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CCA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGTGTCATAGGTTTTCTTaGATACCTCGGGCCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWCHRFS*IPRARS Trigger: ACTTCTGGCCCGAGGTATCCAAGAAAACCTATGACA...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR TCA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGGGGAACCCAAATCACTaGCTGTTCAAAGAAAGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWGNPNH*LFKESC Trigger: ACAACTTTCTTTGAACAGTCAGTGATTTGGGTTCCC...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR TCA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGCTATTAGAGTGGGATTaGTCCAGTACATGGTCACAT | + |
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Preference number: 4 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWLLEWD*SSTWSH Trigger: ATGTGACCATGTACTGGATCAATCCCACTCTAATAG...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR TCA 90 bp | GATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGAGTAGCATGTGCCATTTCCACTTCTaGATATTTCTGTTCTGGTTA | + |
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Preference number: 4 (lower is better) Translates to: DRLLGGKCLIGRNSWSSMCHFHF*IFLFWL Trigger: TAACCAGAACAGAAATATTCAGAAGTGGAAATGGCA...CATGCTACTCCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CCA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGTCTCTCATCCAGCATTaGGTCAAATTCAATTCCATT | + |
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Preference number: 4 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWSLIQH*VKFNSI Trigger: AATGGAATTGAATTTGACCCAATGCTGGATGAGAGA...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CAA 90 bp | GATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGAGTAGCATGCTTCTCCACCTTCACTaGCGGGACCACCCATTGCTC | + |
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Preference number: 5 (lower is better) Translates to: DRLLGGKCLIGRNSWSSMLLHLH*RDHPLL Trigger: GAGCAATGGGTGGTCCCGCAAGTGAAGGTGGAGAAG...CATGCTACTCCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS GCA 90 bp | GGTAGTAGCCTAGTAAAGGTTCACAGACACGGCGGCAGTAACGGTTaGCTCGACGACAGTAAATACAACAGTAACCTCTCTCATCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: GSSLVKVHRHGGSNG*LDDSKYNSNLSHPA Trigger: TGCTGGATGAGAGAGGTTACTGTTGTATTTACTGTCGTCGAGGCAACCGTTACTGCCGCCGTGTCTGTGAACCTTTACTAGGCTACTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CAA 90 bp | AAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGAGTAGCTTGCGGGACCACCCATaGCTCATTCTGGTCAATCCC | + |
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Preference number: 5 (lower is better) Translates to: KDRLLGGKCLIGRNSWSSLRDHP*LILVNP Trigger: GGGATTGACCAGAATGAGCAATGGGTGGTCCCGCAA...GCTACTCCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CAA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGTCGGGCCAGAAGTGTTaGCTCCCCCAAAACAGGACA | + |
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Preference number: 5 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWSGQKC*LPQNRT Trigger: TGTCCTGTTTTGGGGGAGCAAACACTTCTGGCCCGA...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS GCA 90 bp | AATTCCATTTTCAGTATAGTCATTTATAGGAAGGTCTTCCTCGCTTaGTTGTCTGGTGTGGCGGGTCTTCTCCACCTTCACTTGCGGGAC | + |
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Preference number: 5 (lower is better) Translates to: NSIFSIVIYRKVFLA*LSGVAGLLHLHLRD Trigger: GTCCCGCAAGTGAAGGTGGAGAAGACCCGCCACACCAGACAAGCAAGCGAGGAAGACCTTCCTATAAATGACTATACTGAAAATGGAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CAA 90 bp | AAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGAGTAGCGCTATTAGAGTGGGATaGATCCAGTACATGGTCACA | + |
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Preference number: 5 (lower is better) Translates to: KDRLLGGKCLIGRNSWSSAIRVG*IQYMVT Trigger: TGTGACCATGTACTGGATCAATCCCACTCTAATAGC...GCTACTCCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS-3UTR CAA 90 bp | ATTCTGAAGGATAGGCTACTTGGAGGCAAATGCCTCATAGGCAGAAATTCATGGCTCTCTCATCCAGCATaGGGTCAAATTCAATTCCAT | + |
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Preference number: 5 (lower is better) Translates to: ILKDRLLGGKCLIGRNSWLSHPA*GQIQFH Trigger: ATGGAATTGAATTTGACCCAATGCTGGATGAGAGAG...CCATGAATTTCTGCCTATGAGGCATTTGCCTCCAAGTAGCCTATCCTTCAGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS GCA 90 bp | TGGTTATGGGATCAATTTCCATGTAAATCTTCTTCTTCTCGCCGTTaGTGTAGAAAGTGTGCTCCATGTCATAGGTTTTCTTGGATACCT | + |
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Preference number: 5 (lower is better) Translates to: WLWDQFPCKSSSSRR*CRKCAPCHRFSWIP Trigger: AGGTATCCAAGAAAACCTATGACATGGAGCACACTTTCTACAGCAACGGCGAGAAGAAGAAGATTTACATGGAAATTGATCCCATAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS CCA 90 bp | GCCTCGACGACAGTAAATACAACAGTAACCTCTCTCATCCAGCATTaGGTCAAATTCAATTCCATTTTCAGTATAGTCATTTATAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: ASTTVNTTVTSLIQH*VKFNSIFSIVIYRK Trigger: CTTCCTATAAATGACTATACTGAAAATGGAATTGAATTTGACCCAATGCTGGATGAGAGAGGTTACTGTTGTATTTACTGTCGTCGAGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS GCA 72 bp | GCTTGTCTGGTGTGGCGGGTCTTCTCCACCTTCACTTaGGGGACCACCCATTGCTCATTCTGGTCAATCCCC | + |
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Preference number: 6 (lower is better) Translates to: ACLVWRVFSTFT*GTTHCSFWSIP Trigger: GGGGATTGACCAGAATGAGCAATGGGTGGTCCCGCAAGTGAAGGTGGAGAAGACCCGCCACACCAGACAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS CAA 72 bp | TGCTTGTCTGGTGTGGCGGGTCTTCTCCACCTTCACTaGCGGGACCACCCATTGCTCATTCTGGTCAATCCC | + |
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Preference number: 6 (lower is better) Translates to: CLSGVAGLLHLH*RDHPLLILVNP Trigger: GGGATTGACCAGAATGAGCAATGGGTGGTCCCGCAAGTGAAGGTGGAGAAGACCCGCCACACCAGACAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS CCA 72 bp | TTTATAGGAAGGTCTTCCTCGCTTGCTTGTCTGGTGTaGCGGGTCTTCTCCACCTTCACTTGCGGGACCACC | + |
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Preference number: 6 (lower is better) Translates to: FIGRSSSLACLV*RVFSTFTCGTT Trigger: GGTGGTCCCGCAAGTGAAGGTGGAGAAGACCCGCCACACCAGACAAGCAAGCGAGGAAGACCTTCCTATAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS CAA 90 bp | TCCATTTTCAGTATAGTCATTTATAGGAAGGTCTTCCTCGCTTGCTaGTCTGGTGTGGCGGGTCTTCTCCACCTTCACTTGCGGGACCAC | + |
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Preference number: 6 (lower is better) Translates to: SIFSIVIYRKVFLAC*SGVAGLLHLHLRDH Trigger: GTGGTCCCGCAAGTGAAGGTGGAGAAGACCCGCCACACCAGACAAGCAAGCGAGGAAGACCTTCCTATAAATGACTATACTGAAAATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS GCA 72 bp | TTCAGTATAGTCATTTATAGGAAGGTCTTCCTCGCTTaGTTGTCTGGTGTGGCGGGTCTTCTCCACCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: FSIVIYRKVFLA*LSGVAGLLHLH Trigger: GTGAAGGTGGAGAAGACCCGCCACACCAGACAAGCAAGCGAGGAAGACCTTCCTATAAATGACTATACTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS GCA 72 bp | CTAGTAAAGGTTCACAGACACGGCGGCAGTAACGGTTaGCTCGACGACAGTAAATACAACAGTAACCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LVKVHRHGGSNG*LDDSKYNSNLS Trigger: AGAGAGGTTACTGTTGTATTTACTGTCGTCGAGGCAACCGTTACTGCCGCCGTGTCTGTGAACCTTTACTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS CAA 72 bp | AGTATAGTCATTTATAGGAAGGTCTTCCTCGCTTGCTaGTCTGGTGTGGCGGGTCTTCTCCACCTTCACTTG | + |
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Preference number: 6 (lower is better) Translates to: SIVIYRKVFLAC*SGVAGLLHLHL Trigger: CAAGTGAAGGTGGAGAAGACCCGCCACACCAGACAAGCAAGCGAGGAAGACCTTCCTATAAATGACTATACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS TCA 72 bp | AGTCCTGTAATTCTGAAACTGCTATTAGAGTGGGATTaGTCCAGTACATGGTCACATTATCGCAAATCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SPVILKLLLEWD*SSTWSHYRKSP Trigger: TGGAGATTTGCGATAATGTGACCATGTACTGGATCAATCCCACTCTAATAGCAGTTTCAGAATTACAGGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS GCA 72 bp | GATCAATTTCCATGTAAATCTTCTTCTTCTCGCCGTTaGTGTAGAAAGTGTGCTCCATGTCATAGGTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: DQFPCKSSSSRR*CRKCAPCHRFS Trigger: AGAAAACCTATGACATGGAGCACACTTTCTACAGCAACGGCGAGAAGAAGAAGATTTACATGGAAATTGATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS CAA 72 bp | AAGTCCTGTAATTCTGAAACTGCTATTAGAGTGGGATaGATCCAGTACATGGTCACATTATCGCAAATCTCC | + |
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Preference number: 6 (lower is better) Translates to: KSCNSETAIRVG*IQYMVTLSQIS Trigger: GGAGATTTGCGATAATGTGACCATGTACTGGATCAATCCCACTCTAATAGCAGTTTCAGAATTACAGGACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS CAA 72 bp | GACAGTAAATACAACAGTAACCTCTCTCATCCAGCATaGGGTCAAATTCAATTCCATTTTCAGTATAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: DSKYNSNLSHPA*GQIQFHFQYSH Trigger: ATGACTATACTGAAAATGGAATTGAATTTGACCCAATGCTGGATGAGAGAGGTTACTGTTGTATTTACTGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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| CDS CCA 72 bp | ACAGTAAATACAACAGTAACCTCTCTCATCCAGCATTaGGTCAAATTCAATTCCATTTTCAGTATAGTCATT | + |
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Preference number: 6 (lower is better) Translates to: TVNTTVTSLIQH*VKFNSIFSIVI Trigger: AATGACTATACTGAAAATGGAATTGAATTTGACCCAATGCTGGATGAGAGAGGTTACTGTTGTATTTACTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033602.9 |
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