Pregenerated sensors for TNFSFM13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018752Ensembl transcript IDs: ENSMUST00000108649.3, ENSMUST00000174159.8, ENSMUST00000180587.8
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTaGCCGTTCCTTGTCCTTTGTCTAGCCAGTTTTTGGAATGGGAAA | + |
|
Preference number: 1 (lower is better) Translates to: KGRNNSQGKAMESCS*PFLVLCLASFWNGK Trigger: TTTCCCATTCCAAAAACTGGCTAGACAAAGGACAAGGAACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| 3UTR-3UTR TCA 90 bp | CTATTTAGACCAAGTTGGCCTCGAACTCATCGAGATCTGCCTCCCGAGTACTGTGGGCTTCTTGTTAATTaGAGCAGAGGGTACTTGAAG | + |
|
Preference number: 2 (lower is better) Translates to: LFRPSWPRTHRDLPPEYCGLLVN*SRGYLK Trigger: CTTCAAGTACCCTCTGCTTCAATTAACAAGAAGCCC...ACAGTACTCGGGAGGCAGATCTCGATGAGTTCGAGGCCAACTTGGTCTAAATAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR CAA 90 bp | ATCGAGGCACCTAACATATATCTTTTTCTAGATAGTAACAAGAATTaGGACGCAATAGGTGAAATACTGAAAGCCGGGCTTCTTGTTAAT | + |
|
Preference number: 2 (lower is better) Translates to: IEAPNIYLFLDSNKN*DAIGEILKAGLLVN Trigger: ATTAACAAGAAGCCCGGCTTTCAGTATTTCACCTATTGCGTCCAAATTCTTGTTACTATCTAGAAAAAGATATATGTTAGGTGCCTCGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR GCA 72 bp | CCTCAACCTGCCGCTAGATGGTGCTGCTGTTCTGGATaGATTCCAGTGGACAAGGCTTGGCACAGTGCGCAA | + |
|
Preference number: 3 (lower is better) Translates to: PQPAARWCCCSG*IPVDKAWHSAQ Trigger: TTGCGCACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR CCA 72 bp | CCGCTAGATGGTGCTGCTGTTCTGGATGCATTCCAGTaGACAAGGCTTGGCACAGTGCGCAAAACCCCCTTC | + |
|
Preference number: 3 (lower is better) Translates to: PLDGAAVLDAFQ*TRLGTVRKTPF Trigger: GAAGGGGGTTTTGCGCACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR CCA 72 bp | TGCTGCTGTTCTGGATGCATTCCAGTGGACAAGGCTTaGCACAGTGCGCAAAACCCCCTTCGCACACACAAC | + |
|
Preference number: 3 (lower is better) Translates to: CCCSGCIPVDKA*HSAQNPLRTHN Trigger: GTTGTGTGTGCGAAGGGGGTTTTGCGCACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR GCA 72 bp | GAGACCATAGTCTTTCCTCAACCTGCCGCTAGATGGTaGTGCTGTTCTGGATGCATTCCAGTGGACAAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: ETIVFPQPAARW*CCSGCIPVDKA Trigger: AGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAGGAAAGACTATGGTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR GCA 72 bp | CCTCCCGAGTACTGTGATTTAAGGCGTAAAGCTCAGTaGCCAGCTCGGAAGTGTATAGGAGAATGGGGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: PPEYCDLRRKAQ*PARKCIGEWGG Trigger: TCCTCCCCATTCTCCTATACACTTCCGAGCTGGGCACTGAGCTTTACGCCTTAAATCACAGTACTCGGGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR CCA 72 bp | GCAGAGACCATAGTCTTTCCTCAACCTGCCGCTAGATaGTGCTGCTGTTCTGGATGCATTCCAGTGGACAAG | + |
|
Preference number: 3 (lower is better) Translates to: AETIVFPQPAAR*CCCSGCIPVDK Trigger: CTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAGGAAAGACTATGGTCTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR CCA 72 bp | GAGACAGGGTCTCACCATTGTAACCCCTGGGTGGCCTaGAACTCACTATTTAGACCAAGTTGGCCTCGAACT | + |
|
Preference number: 3 (lower is better) Translates to: ETGSHHCNPWVA*NSLFRPSWPRT Trigger: AGTTCGAGGCCAACTTGGTCTAAATAGTGAGTTCCAGGCCACCCAGGGGTTACAATGGTGAGACCCTGTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR CCA 72 bp | TGTTTGAGACAGGGTCTCACCATTGTAACCCCTGGGTaGCCTGGAACTCACTATTTAGACCAAGTTGGCCTC | + |
|
Preference number: 3 (lower is better) Translates to: CLRQGLTIVTPG*PGTHYLDQVGL Trigger: GAGGCCAACTTGGTCTAAATAGTGAGTTCCAGGCCACCCAGGGGTTACAATGGTGAGACCCTGTCTCAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR CCA 72 bp | AAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATaGAGAGCTGTTCTTGACCGTTCCTTGTCCTTTGTC | + |
|
Preference number: 3 (lower is better) Translates to: KAKGGTTVKAKP*RAVLDRSLSFV Trigger: GACAAAGGACAAGGAACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| 3UTR TCA 72 bp | TGCCCAGCTCGGAAGTGTATAGGAGAATGGGGAGGATaGATGGCATGCATATCGAGGCACCTAACATATATC | + |
|
Preference number: 3 (lower is better) Translates to: CPARKCIGEWGG*MACISRHLTYI Trigger: GATATATGTTAGGTGCCTCGATATGCATGCCATTCATCCTCCCCATTCTCCTATACACTTCCGAGCTGGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| 3UTR TCA 72 bp | AACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTaGCCGTTCCTTGTCCTTTGTCTAGCCAGTTTTTGG | + |
|
Preference number: 3 (lower is better) Translates to: NNSQGKAMESCS*PFLVLCLASFW Trigger: CCAAAAACTGGCTAGACAAAGGACAAGGAACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| 3UTR TCA 72 bp | ATAGGTGAAATACTGAAAGCCGGGCTTCTTGTTAATTaGAGCAGAGGGTACTTGAAGAGTTGGATAAGGTTT | + |
|
Preference number: 3 (lower is better) Translates to: IGEILKAGLLVN*SRGYLKSWIRF Trigger: AAACCTTATCCAACTCTTCAAGTACCCTCTGCTTCAATTAACAAGAAGCCCGGCTTTCAGTATTTCACCTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGCCCAGCTCCCCAGGCTaGCCACGACCAGCAGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: ERERQREEQQSRQSHGELPSSPG*PRPAGG Trigger: GCCTCCTGCTGGTCGTGGTCAGCCTGGGGAGCTGGG...CAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GGAGTCAAAGCCCAGATAGTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCCCCAGCTCCCCAGGCTaGCCACGACCAGCAGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: GVKAQIVGAGKAKGGTTVPSSPG*PRPAGG Trigger: GCCTCCTGCTGGTCGTGGTCAGCCTGGGGAGCTGGG...GACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCACTATCTGGGCTTTGACTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR GCA 90 bp | GGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCCTGGGCAGACAGCGTTaGCCAGCTCCCCAGGCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: GSGKGKGRNNSQGKAMESLGRQR*PAPQAD Trigger: GTCAGCCTGGGGAGCTGGGCAACGCTGTCTGCCCAG...GCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR GCA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGACTGGGCAGACAGCGTTaGCCAGCTCCCCAGGCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRLGRQR*PAPQAD Trigger: GTCAGCCTGGGGAGCTGGGCAACGCTGTCTGCCCAG...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR GCA 90 bp | GGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCCTCCCGGCGGTCCTCTaGTGTCAGCTCCTCCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: GSGKGKGRNNSQGKAMESLPAVL*CQLLLR Trigger: TCTCAGGAGGAGCTGACAGCAGAGGACCGCCGGGAG...GCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGCGCTCTCCCTGCTTCTaGGAAGGCCCTCCACTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: ERERQREEQQSRQSHGELRSPCF*EGPPLR Trigger: GCGGAGTGGAGGGCCTTCCCAGAAGCAGGGAGAGCG...CAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTCAGCTCCTCCTaGGAAGGCTCCTGGGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRAVSSS*EGSWAD Trigger: GTCTGCCCAGGAGCCTTCTCAGGAGGAGCTGACAGC...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174159.8 |
||
| CDS-3UTR CCA 90 bp | GGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCCGTACAATGTCTCCCTaGGCCTCCAGGCCTCTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: GSGKGKGRNNSQGKAMESRTMSP*ASRPLP Trigger: TGGGAGAGGCCTGGAGGCCCAGGGAGACATTGTACG...GCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGACGTACAATGTCTCCCTaGGCCTCCAGGCCTCTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRRTMSP*ASRPLP Trigger: TGGGAGAGGCCTGGAGGCCCAGGGAGACATTGTACG...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTCGCTCTCCCTGCTTCTaGGAAGGCCCTCCACTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRRSPCF*EGPPLR Trigger: GCGGAGTGGAGGGCCTTCCCAGAAGCAGGGAGAGCG...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTTGCTGCTGTGGCTaGGAATTCTTCCAGGCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRACCCG*EFFQAA Trigger: CGCTGCCTGGAAGAATTCTCAGCCACAGCAGCAAGC...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGGCTTGCTGCTGTGGCTaGGAATTCTTCCAGGCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: ERERQREEQQSRQSHGELACCCG*EFFQAA Trigger: CGCTGCCTGGAAGAATTCTCAGCCACAGCAGCAAGC...CAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR GCA 90 bp | GAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGATCCACACCTGCTTGTaGTCCATCCTGTCCTGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: ERERQREEQQSRQSHGELIHTCL*SILSWP Trigger: CGGCCAGGACAGGATGGAGCACAAGCAGGTGTGGAT...CAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR GCA 90 bp | CTATTTAGACCAAGTTGGCCTCGAACTCATCGAGATCTGCCTCCCGAGTACTGTCTCCCGGCGGTCCTCTaGTGTCAGCTCCTCCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: LFRPSWPRTHRDLPPEYCLPAVL*CQLLLR Trigger: TCTCAGGAGGAGCTGACAGCAGAGGACCGCCGGGAG...ACAGTACTCGGGAGGCAGATCTCGATGAGTTCGAGGCCAACTTGGTCTAAATAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGATGGCTTTCCTCTGTCTaGGGATTCAGTTCAGGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRWLSSV*GFSSGG Trigger: GCCCCCTGAACTGAATCCCCAGACAGAGGAAAGCCA...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCCCCACGCCTAAGTACTaGTTGCCACATCACCTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: GSGKGKGRNNSQGKAMESPTPKY*LPHHLC Trigger: ACAGAGGTGATGTGGCAACCAGTACTTAGGCGTGGG...GCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGATCTTGTGCTTCTGGGTaGGTACTGCTCTCCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRSCASG*VLLSFS Trigger: GGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGA...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCAAAGGTACCACATCCTaGCTTTCCTCTGTCTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: GSGKGKGRNNSQGKAMESKGTTS*LSSVWG Trigger: TCCCCAGACAGAGGAAAGCCAGGATGTGGTACCTTT...GCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGCCCACGCCTAAGTACTaGTTGCCACATCACCTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: ERERQREEQQSRQSHGELPTPKY*LPHHLC Trigger: ACAGAGGTGATGTGGCAACCAGTACTTAGGCGTGGG...CAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTTGGCTTTCCTCTGTCTaGGGATTCAGTTCAGGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRWLSSV*GFSSGG Trigger: GCCCCCTGAACTGAATCCCCAGACAGAGGAAAGCCA...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAAAAGGTACCACATCCTaGCTTTCCTCTGTCTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRKGTTS*LSSVWG Trigger: TCCCCAGACAGAGGAAAGCCAGGATGTGGTACCTTT...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTTCTTGTGCTTCTGGGTaGGTACTGCTCTCCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRSCASG*VLLSFS Trigger: GGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGA...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTTCTTCTTGTGCTTCTaGGTGAGTACTGCTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: GSGKGKGRNNSQGKAMESFFLCF*VSTALL Trigger: AAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAA...GCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTGAGAGCTTGCTGCTGTaGCTGAGAATTCTTCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRESLLL*LRILPG Trigger: GCCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTC...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGACCACCTGACCCATTGTaGAAGTCACATCATGAAACA | + |
|
Preference number: 4 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRPPDPL*KSHHET Trigger: TGTTTCATGATGTGACTTTCACAATGGGTCAGGTGG...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTAACAAGATGCAGGACTaGGTGCTTCTTCTTGTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRNKMQD*VLLLVL Trigger: AAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTT...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GGAGTCAAAGCCCAGATAGTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCCAGAAGGCATACTTCTaGTACATCGGAATAGAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: GVKAQIVGAGKAKGGTTVQKAYF*YIGIEF Trigger: AAACTCTATTCCGATGTATCAGAAGTATGCCTTCTG...GACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCACTATCTGGGCTTTGACTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GGAGTCAAAGCCCAGATAGTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCTTTTGCGTTTGCCCGTaGAATTTTGACAGTGATAAT | + |
|
Preference number: 4 (lower is better) Translates to: GVKAQIVGAGKAKGGTTVFCVCP*NFDSDN Trigger: ATTATCACTGTCAAAATTCCACGGGCAAACGCAAAA...GACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCACTATCTGGGCTTTGACTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR TCA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTCAGAAGGCATACTTCTaGTACATCGGAATAGAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRQKAYF*YIGIEF Trigger: AAACTCTATTCCGATGTATCAGAAGTATGCCTTCTG...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CCA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTTTTTGCGTTTGCCCGTaGAATTTTGACAGTGATAAT | + |
|
Preference number: 4 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRFCVCP*NFDSDN Trigger: ATTATCACTGTCAAAATTCCACGGGCAAACGCAAAA...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 90 bp | GGACTCTGCTCCCAGAGGCTCTGCCATGGGCGCTCTCCCTGCTTCTaGGAAGGCCCTCCACTCCGCTGCAGCCGGCTCACCTCCCGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: GLCSQRLCHGRSPCF*EGPPLRCSRLTSRL Trigger: AAGGCGGGAGGTGAGCCGGCTGCAGCGGAGTGGAGGGCCTTCCCAGAAGCAGGGAGAGCGCCCATGGCAGAGCCTCTGGGAGCAGAGTCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS GCA 90 bp | GGCCCTCCACTCCGCTGCAGCCGGCTCACCTCCCGCCTTAGGCTTTaGAGCTCTGTCTGGCACAAACGGAGCTGGGGCCCAGGAGAGCTT | + |
|
Preference number: 5 (lower is better) Translates to: GPPLRCSRLTSRLRL*SSVWHKRSWGPGEL Trigger: AAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGACAGAGCTGCAAAGCCTAAGGCGGGAGGTGAGCCGGCTGCAGCGGAGTGGAGGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS GCA 90 bp | TGCTGTCAGCTCCTCCTGAGAAGGCTCCTGCTGGGCAGACAGCGTTaGCCAGCTCCCCAGGCTGACCACGACCAGCAGGAGGCCAAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: CCQLLLRRLLLGRQR*PAPQADHDQQEAKA Trigger: TGCCTTGGCCTCCTGCTGGTCGTGGTCAGCCTGGGGAGCTGGGCAACGCTGTCTGCCCAGCAGGAGCCTTCTCAGGAGGAGCTGACAGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS CCA 90 bp | CGCTGCAGCCGGCTCACCTCCCGCCTTAGGCTTTGCAGCTCTGTCTaGCACAAACGGAGCTGGGGCCCAGGAGAGCTTGCTGCTGTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: RCSRLTSRLRLCSSV*HKRSWGPGELAAVA Trigger: AGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGACAGAGCTGCAAAGCCTAAGGCGGGAGGTGAGCCGGCTGCAGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 90 bp | CTGTCTGGCACAAACGGAGCTGGGGCCCAGGAGAGCTTGCTGCTGTaGCTGAGAATTCTTCCAGGCAGCGCAGGGCCAGCACACCGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: LSGTNGAGAQESLLL*LRILPGSAGPAHRS Trigger: TGAACGGTGTGCTGGCCCTGCGCTGCCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 90 bp | ACCTCCCGCCTTAGGCTTTGCAGCTCTGTCTGGCACAAACGGAGCTaGGGCCCAGGAGAGCTTGCTGCTGTGGCTGAGAATTCTTCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: TSRLRLCSSVWHKRS*GPGELAAVAENSSR Trigger: CCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGACAGAGCTGCAAAGCCTAAGGCGGGAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 90 bp | CTTCTTCGAGGCCGGACTAGTTGTTCCAAGAAAGGTACCACATCCTaGCTTTCCTCTGTCTGGGGATTCAGTTCAGGGGGCTCCCGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: LLRGRTSCSKKGTTS*LSSVWGFSSGGSRR Trigger: CCGCCGGGAGCCCCCTGAACTGAATCCCCAGACAGAGGAAAGCCAGGATGTGGTACCTTTCTTGGAACAACTAGTCCGGCCTCGAAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108649.3 ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CAA 90 bp | GTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAACGCCTAAGTACTGGTaGCCACATCACCTCTGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: VGAGKAKGGTTVKAKPWRTPKYW*PHHLCH Trigger: GTGACAGAGGTGATGTGGCAACCAGTACTTAGGCGT...TCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CAA 90 bp | GGAGTCAAAGCCCAGATAGTGGGAGCGGGAAAGGCAAAGGGAGGAACAACAGTCACTGAGTGCTTCTTCTaGTGCTTCTGGGTGAGTACT | + |
|
Preference number: 5 (lower is better) Translates to: GVKAQIVGAGKAKGGTTVTECFF*CFWVST Trigger: AGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGT...GACTGTTGTTCCTCCCTTTGCCTTTCCCGCTCCCACTATCTGGGCTTTGACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CAA 90 bp | GAGCGGGAAAGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGACTGAGTGCTTCTTCTaGTGCTTCTGGGTGAGTACT | + |
|
Preference number: 5 (lower is better) Translates to: ERERQREEQQSRQSHGELTECFF*CFWVST Trigger: AGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGT...CAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCTTTCCCGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CAA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTACGCCTAAGTACTGGTaGCCACATCACCTCTGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRTPKYW*PHHLCH Trigger: GTGACAGAGGTGATGTGGCAACCAGTACTTAGGCGT...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS-3UTR CAA 90 bp | GCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTAGTTTCTCTTCTCCCTaGTCCTTCCCGAGATACCAC | + |
|
Preference number: 5 (lower is better) Translates to: AKGGTTVKAKPWRAVLDRSFSSP*SFPRYH Trigger: GTGGTATCTCGGGAAGGACAAGGGAGAAGAGAAACT...ACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 90 bp | TTAACTGGAACAAGATGCAGGACTGAGTGCTTCTTCTTGTGCTTCTaGGTGAGTACTGCTCTCCTTCTCCGAGATTTCGCCCCATCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LTGTRCRTECFFLCF*VSTALLLRDFAPSF Trigger: GAAGGATGGGGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108649.3 ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS GCA 90 bp | TCTGCCTTGGAGGTAATGTTAACTGGAACAAGATGCAGGACTGAGTaGTTCTTCTTGTGCTTCTGGGTGAGTACTGCTCTCCTTCTCCGA | + |
|
Preference number: 5 (lower is better) Translates to: SALEVMLTGTRCRTE*FFLCFWVSTALLLR Trigger: TCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS-3UTR CAA 90 bp | CTATTTAGACCAAGTTGGCCTCGAACTCATCGAGATCTGCCTCCCGAGTACTGTACGTCAGAGTCTGCCTaGGAGGTAATGTTAACTGGA | + |
|
Preference number: 5 (lower is better) Translates to: LFRPSWPRTHRDLPPEYCTSESA*EVMLTG Trigger: TCCAGTTAACATTACCTCCAAGGCAGACTCTGACGT...ACAGTACTCGGGAGGCAGATCTCGATGAGTTCGAGGCCAACTTGGTCTAAATAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS TCA 90 bp | AGAGTCTGCCTTGGAGGTAATGTTAACTGGAACAAGATGCAGGACTaGGTGCTTCTTCTTGTGCTTCTGGGTGAGTACTGCTCTCCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: RVCLGGNVNWNKMQD*VLLLVLLGEYCSPS Trigger: AGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGCAGACTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS TCA 72 bp | GCTCCTGGGCAGACAGCGTTGCCCAGCTCCCCAGGCTaGCCACGACCAGCAGGAGGCCAAGGCAGGCCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: APGQTALPSSPG*PRPAGGQGRPA Trigger: CGCTGGCCTGCCTTGGCCTCCTGCTGGTCGTGGTCAGCCTGGGGAGCTGGGCAACGCTGTCTGCCCAGGAGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108649.3 ENSMUST00000174159.8 |
||
| CDS TCA 72 bp | CCTGCTGGGCAGACAGCGTTGCCCAGCTCCCCAGGCTaGCCACGACCAGCAGGAGGCCAAGGCAGGCCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: PAGQTALPSSPG*PRPAGGQGRPA Trigger: CGCTGGCCTGCCTTGGCCTCCTGCTGGTCGTGGTCAGCCTGGGGAGCTGGGCAACGCTGTCTGCCCAGCAGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS CCA 72 bp | TCCCAGAGGCTCTGCCATGGGCGCTCTCCCTGCTTCTaGGAAGGCCCTCCACTCCGCTGCAGCCGGCTCACC | + |
|
Preference number: 6 (lower is better) Translates to: SQRLCHGRSPCF*EGPPLRCSRLT Trigger: GGTGAGCCGGCTGCAGCGGAGTGGAGGGCCTTCCCAGAAGCAGGGAGAGCGCCCATGGCAGAGCCTCTGGGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 72 bp | CGGCTCACCTCCCGCCTTAGGCTTTGCAGCTCTGTCTaGCACAAACGGAGCTGGGGCCCAGGAGAGCTTGCT | + |
|
Preference number: 6 (lower is better) Translates to: RLTSRLRLCSSV*HKRSWGPGELA Trigger: AGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGACAGAGCTGCAAAGCCTAAGGCGGGAGGTGAGCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 72 bp | CAGGACATCAGGACTCTGCTCCCAGAGGCTCTGCCATaGGCGCTCTCCCTGCTTCTGGGAAGGCCCTCCACT | + |
|
Preference number: 6 (lower is better) Translates to: QDIRTLLPEALP*ALSLLLGRPST Trigger: AGTGGAGGGCCTTCCCAGAAGCAGGGAGAGCGCCCATGGCAGAGCCTCTGGGAGCAGAGTCCTGATGTCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 72 bp | ACAAACGGAGCTGGGGCCCAGGAGAGCTTGCTGCTGTaGCTGAGAATTCTTCCAGGCAGCGCAGGGCCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: TNGAGAQESLLL*LRILPGSAGPA Trigger: TGCTGGCCCTGCGCTGCCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CAA 90 bp | TTTGCAGCTCTGTCTGGCACAAACGGAGCTGGGGCCCAGGAGAGCTaGCTGCTGTGGCTGAGAATTCTTCCAGGCAGCGCAGGGCCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: FAALSGTNGAGAQES*LLWLRILPGSAGPA Trigger: TGCTGGCCCTGCGCTGCCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGACAGAGCTGCAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS GCA 72 bp | TGGGCCTCCAGGCCTCTCCCACGCCTAAGTACTGGTTaGCACATCACCTCTGTCACGTCAGAGTCTGCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: WASRPLPRLSTG*HITSVTSESAL Trigger: CAAGGCAGACTCTGACGTGACAGAGGTGATGTGGCAACCAGTACTTAGGCGTGGGAGAGGCCTGGAGGCCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS CCA 72 bp | GGCCGGACTAGTTGTTCCAAGAAAGGTACCACATCCTaGCTTTCCTCTGTCTGGGGATTCAGTTCAGGGGGC | + |
|
Preference number: 6 (lower is better) Translates to: GRTSCSKKGTTS*LSSVWGFSSGG Trigger: GCCCCCTGAACTGAATCCCCAGACAGAGGAAAGCCAGGATGTGGTACCTTTCTTGGAACAACTAGTCCGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108649.3 ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CCA 72 bp | ACAAGATGCAGGACTGAGTGCTTCTTCTTGTGCTTCTaGGTGAGTACTGCTCTCCTTCTCCGAGATTTCGCC | + |
|
Preference number: 6 (lower is better) Translates to: TRCRTECFFLCF*VSTALLLRDFA Trigger: GGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108649.3 ENSMUST00000174159.8 ENSMUST00000180587.8 |
||
| CDS CAA 72 bp | GGTTGCCACATCACCTCTGTCACGTCAGAGTCTGCCTaGGAGGTAATGTTAACTGGAACAAGATGCAGGACT | + |
|
Preference number: 6 (lower is better) Translates to: GCHITSVTSESA*EVMLTGTRCRT Trigger: AGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGCAGACTCTGACGTGACAGAGGTGATGTGGCAACC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS CAA 90 bp | CTAAGTACTGGTTGCCACATCACCTCTGTCACGTCAGAGTCTGCCTaGGAGGTAATGTTAACTGGAACAAGATGCAGGACTGAGTGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: LSTGCHITSVTSESA*EVMLTGTRCRTECF Trigger: GAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGCAGACTCTGACGTGACAGAGGTGATGTGGCAACCAGTACTTAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS GCA 72 bp | GAGTCTGCCTTGGAGGTAATGTTAACTGGAACAAGATaGAGGACTGAGTGCTTCTTCTTGTGCTTCTGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: ESALEVMLTGTR*RTECFFLCFWV Trigger: CACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGCAGACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS GCA 72 bp | TACTGGTTGCCACATCACCTCTGTCACGTCAGAGTCTaGCTTGGAGGTAATGTTAACTGGAACAAGATGCAG | + |
|
Preference number: 6 (lower is better) Translates to: YWLPHHLCHVRV*LGGNVNWNKMQ Trigger: CTGCATCTTGTTCCAGTTAACATTACCTCCAAGGCAGACTCTGACGTGACAGAGGTGATGTGGCAACCAGTA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180587.8 |
||
| CDS CAA 72 bp | ACTGGTTGCCACATCACCTCTGTCACGTCAGAGTCCTaGGAGGTAATGTTAACTGGAACAAGATGCAGGACT | + |
|
Preference number: 6 (lower is better) Translates to: TGCHITSVTSES*EVMLTGTRCRT Trigger: AGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGACTCTGACGTGACAGAGGTGATGTGGCAACCAGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108649.3 ENSMUST00000174159.8 |
||