Pregenerated sensors for TNFSF9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035678Ensembl transcript IDs: ENSMUST00000039490.9
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCCCTCAGACCCACACTaGGGCGGTGGCCAGCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: YQVQLKTRESHGRDPCSDPSDPH*GGGQPS Trigger: TGAAGGCTGGCCACCGCCTCAGTGTGGGTCTGAGGG...GTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | GTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCCCATACCCACACTGAGGCGGTaGCCAGCCTTCAGGAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: VQLKTRESHGRDPCSDPIPTLRR*PAFRSN Trigger: GTTGCTCCTGAAGGCTGGCCACCGCCTCAGTGTGGG...TATGGGGTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR GCA 90 bp | TACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACAGAGAGACCCAGCCCTaGACCTTGTGGCCTGTGTTT | + |
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Preference number: 4 (lower is better) Translates to: YQVQLKTRESHGRDPCSDRETQP*TLWPVF Trigger: AAACACAGGCCACAAGGTGCAGGGCTGGGTCTCTCT...GTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | ATACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGATTGGGGCAGCCAATGTaGGAAACAGGGGTGACCTGG | + |
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Preference number: 4 (lower is better) Translates to: IPSPVKDKRKSWKGPLLRLGQPM*ETGVTW Trigger: CCAGGTCACCCCTGTTTCCCACATTGGCTGCCCCAA...TCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | GTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCCCATACAGCCCTGCACCTTGTaGCCTGTGTTTGTGAATGTT | + |
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Preference number: 4 (lower is better) Translates to: VQLKTRESHGRDPCSDPIQPCTL*PVFVNV Trigger: AACATTCACAAACACAGGCCACAAGGTGCAGGGCTG...TATGGGGTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR GCA 90 bp | GTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCCCATAGCTCCATCTTGGCTGTaGCAGTTCAGAGTTGTATTG | + |
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Preference number: 4 (lower is better) Translates to: VQLKTRESHGRDPCSDPIAPSWL*QFRVVL Trigger: CAATACAACTCTGAACTGGCACAGCCAAGATGGAGC...TATGGGGTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | AGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCCCATAGAGTCCAAAGCTGGTaGTGTTGGGATAAGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: SPVKDKRKSWKGPLLRPHRVQSW*CWDKTA Trigger: AGCTGTCTTATCCCAACACCACCAGCTTTGGACTCT...ATGGGGTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR TCA 90 bp | CAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCCCATAAAATGTGGGAAACAGGGGTaGCCTGGTCTGCATTATTCT | + |
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Preference number: 4 (lower is better) Translates to: QLKTRESHGRDPCSDPIKCGKQG*PGLHYS Trigger: AGAATAATGCAGACCAGGTCACCCCTGTTTCCCACA...TTTTATGGGGTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | CAGCTGCCCAGCAGTTTACTAATGCTATCTAGTGAATTATATAAAGTCTTGTCTGGTAGGCAGCATCCGTaGGGAGCGCGGCATTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: QLPSSLLMLSSELYKVLSGRQHP*GARHLW Trigger: CCACAAATGCCGCGCTCCCCACGGATGCTGCCTACC...AGACAAGACTTTATATAATTCACTAGATAGCATTAGTAAACTGCTGGGCAGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | CAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCCCATAAAACAAAGCTGGTGGTGTTaGGATAAGACAGCTCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: QLKTRESHGRDPCSDPIKQSWWC*DKTAPS Trigger: ACTGGGAGCTGTCTTATCCCAACACCACCAGCTTTG...TTTTATGGGGTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | TACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACTTGCACAACGATGCTTaGTTTTTAGCCAGTAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: YQVQLKTRESHGRDPCSDLHNDA*FLASSL Trigger: CAAGCTACTGGCTAAAAACCAAGCATCGTTGTGCAA...GTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR GCA 90 bp | ATACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGAATCTACCTGAGGCTTTaGTTGCAAAACAAGAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: IPSPVKDKRKSWKGPLLRIYLRL*LQNKRD Trigger: GTCTCTCTTGTTTTGCAAGCAAAGCCTCAGGTAGAT...TCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR GCA 90 bp | CCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCCCATAAAAGTTCAGAGTTGTATTaGACAACGATGCTTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: PVKDKRKSWKGPLLRPHKSSELY*TTMLGF Trigger: AAAACCAAGCATCGTTGTGCAATACAACTCTGAACT...TTTATGGGGTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | AAGTCTTGTCTGAGCTATGCTCAGAATAAATACCAAGTCCAGTTAAAGACAAGACTCCCAGCTCCATCTTaGCTGTGCCAGTTCAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: KSCLSYAQNKYQVQLKTRLPAPS*LCQFRV Trigger: AACTCTGAACTGGCACAGCCAAGATGGAGCTGGGAG...TCTTGTCTTTAACTGGACTTGGTATTTATTCTGAGCATAGCTCAGACAAGACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CCA 90 bp | AAGTCTTGTCTGAGCTATGCTCAGAATAAATACCAAGTCCAGTTAAAGACAAGACTAACTTGTTCTCCATaGAGCAAGGGAACAGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: KSCLSYAQNKYQVQLKTRLTCSP*SKGTVP Trigger: TGGAACTGTTCCCTTGCTCCATGGAGAACAAGTTAG...TCTTGTCTTTAACTGGACTTGGTATTTATTCTGAGCATAGCTCAGACAAGACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 90 bp | ATTCTCTCGGGTACCCAGGTTGGGCGAGGTGGTGATTGTGAGCGCTaGCCGAGGCTCGGTGCGGGTGAAGATAGGAACACAGGCGGCGAT | + |
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Preference number: 5 (lower is better) Translates to: ILSGTQVGRGGDCER*PRLGAGEDRNTGGD Trigger: ATCGCCGCCTGTGTTCCTATCTTCACCCGCACCGAGCCTCGGCCAGCGCTCACAATCACCACCTCGCCCAACCTGGGTACCCGAGAGAAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CAA 90 bp | ATACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGATCTCGGGTACCCAGGTaGGGCGAGGTGGTGATTGTG | + |
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Preference number: 5 (lower is better) Translates to: IPSPVKDKRKSWKGPLLRSRVPR*GEVVIV Trigger: CACAATCACCACCTCGCCCAACCTGGGTACCCGAGA...TCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 90 bp | GGAGCAACAGTTGACTCCAGGAACGGTCCACTAACTTGTTCTCCATaGAGCAAGGGAACAGTTCCACTGTCAGGGCCAAGTTGTCAAAGT | + |
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Preference number: 5 (lower is better) Translates to: GATVDSRNGPLTCSP*SKGTVPLSGPSCQS Trigger: ACTTTGACAACTTGGCCCTGACAGTGGAACTGTTCCCTTGCTCCATGGAGAACAAGTTAGTGGACCGTTCCTGGAGTCAACTGTTGCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 90 bp | ATGGGTTGTCGGGTTTCACAAGAAAGAGTCCAAAGCTGGTGGTGTTaGGATAAGACAGCTCCCAGTCTCTGTATGCATCCTGGGCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: MGCRVSQERVQSWWC*DKTAPSLCMHPGLH Trigger: ATGGAGCCCAGGATGCATACAGAGACTGGGAGCTGTCTTATCCCAACACCACCAGCTTTGGACTCTTTCTTGTGAAACCCGACAACCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 90 bp | ATTCCCATGGGTTGTCGGGTTTCACAAGAAAGAGTCCAAAGCTGGTaGTGTTGGGATAAGACAGCTCCCAGTCTCTGTATGCATCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: IPMGCRVSQERVQSW*CWDKTAPSLCMHPG Trigger: CCCAGGATGCATACAGAGACTGGGAGCTGTCTTATCCCAACACCACCAGCTTTGGACTCTTTCTTGTGAAACCCGACAACCCATGGGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CAA 90 bp | TACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACCTTCAGGAGCAACAGTaGACTCCAGGAACGGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: YQVQLKTRESHGRDPCSDLQEQQ*TPGTVH Trigger: GTGGACCGTTCCTGGAGTCAACTGTTGCTCCTGAAG...GTCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS TCA 90 bp | CTGTCTACCACCAACTCCTTTTTGTCTTCTTCGTACCTCAGACCTTaGGATAGGTATGAGCTCCCAGCTCCATCTTGGCTGTGCCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: LSTTNSFLSSSYLRP*DRYELPAPSWLCQF Trigger: GAACTGGCACAGCCAAGATGGAGCTGGGAGCTCATACCTATCTCAAGGTCTGAGGTACGAAGAAGACAAAAAGGAGTTGGTGGTAGACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 90 bp | CCATCTTGGCTGTGCCAGTTCAGAGTTGTATTGCACAACGATGCTTaGTTTTTAGCCAGTAGCTTGGCGAACACAGGAGAGCCCTGTTGT | + |
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Preference number: 5 (lower is better) Translates to: PSWLCQFRVVLHNDA*FLASSLANTGEPCC Trigger: ACAACAGGGCTCTCCTGTGTTCGCCAAGCTACTGGCTAAAAACCAAGCATCGTTGTGCAATACAACTCTGAACTGGCACAGCCAAGATGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CAA 90 bp | ATACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGATTTTTAGCCAGTAGCTaGGCGAACACAGGAGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: IPSPVKDKRKSWKGPLLRFLASS*ANTGEP Trigger: GGGCTCTCCTGTGTTCGCCAAGCTACTGGCTAAAAA...TCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CAA 90 bp | ATACCAAGTCCAGTTAAAGACAAGAGAAAGTCATGGAAGGGACCCCTGCTCAGACATCTACCTGAGGCTTaGCTTGCAAAACAAGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: IPSPVKDKRKSWKGPLLRHLPEA*LAKQER Trigger: TCTCTCTTGTTTTGCAAGCAAAGCCTCAGGTAGATG...TCTGAGCAGGGGTCCCTTCCATGACTTTCTCTTGTCTTTAACTGGACTTGGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CAA 90 bp | CAGCTGCCCAGCAGTTTACTAATGCTATCTAGTGAATTATATAAAGTCTTGTCTCCCTGTTGTGTAGTGTaGGGGCAGCCAATGTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: QLPSSLLMLSSELYKVLSPCCVV*GQPMWE Trigger: TTCCCACATTGGCTGCCCCAACACTACACAACAGGG...AGACAAGACTTTATATAATTCACTAGATAGCATTAGTAAACTGCTGGGCAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS-3UTR CAA 90 bp | AAGTCTTGTCTGAGCTATGCTCAGAATAAATACCAAGTCCAGTTAAAGACAAGAGAACGGTCCACTAACTaGTTCTCCATGGAGCAAGGG | + |
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Preference number: 5 (lower is better) Translates to: KSCLSYAQNKYQVQLKTRERSTN*FSMEQG Trigger: CCCTTGCTCCATGGAGAACAAGTTAGTGGACCGTTC...TCTTGTCTTTAACTGGACTTGGTATTTATTCTGAGCATAGCTCAGACAAGACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS GCA 72 bp | GCCATAGAGCTTTGGGTGGCGGGAACAGAAGTTCAGTaGAGGCGGCCACGCGGCCTCGCGATCCCGAACATT | + |
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Preference number: 6 (lower is better) Translates to: AIELWVAGTEVQ*RRPRGLAIPNI Trigger: AATGTTCGGGATCGCGAGGCCGCGTGGCCGCCTGCACTGAACTTCTGTTCCCGCCACCCAAAGCTCTATGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 72 bp | GGTACCCAGGTTGGGCGAGGTGGTGATTGTGAGCGCTaGCCGAGGCTCGGTGCGGGTGAAGATAGGAACACA | + |
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Preference number: 6 (lower is better) Translates to: GTQVGRGGDCER*PRLGAGEDRNT Trigger: TGTGTTCCTATCTTCACCCGCACCGAGCCTCGGCCAGCGCTCACAATCACCACCTCGCCCAACCTGGGTACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CAA 72 bp | GTGACCTGGTCTGCATTATTCTCTCGGGTACCCAGGTaGGGCGAGGTGGTGATTGTGAGCGCTGGCCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: VTWSALFSRVPR*GEVVIVSAGRG Trigger: GCCTCGGCCAGCGCTCACAATCACCACCTCGCCCAACCTGGGTACCCGAGAGAATAATGCAGACCAGGTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS GCA 72 bp | GGGGCAGCCAATGTGGGAAACAGGGGTGACCTGGTCTaGATTATTCTCTCGGGTACCCAGGTTGGGCGAGGT | + |
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Preference number: 6 (lower is better) Translates to: GAANVGNRGDLV*IILSGTQVGRG Trigger: ACCTCGCCCAACCTGGGTACCCGAGAGAATAATGCAGACCAGGTCACCCCTGTTTCCCACATTGGCTGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 72 bp | GTGTTGGGGCAGCCAATGTGGGAAACAGGGGTGACCTaGTCTGCATTATTCTCTCGGGTACCCAGGTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: VLGQPMWETGVT*SALFSRVPRLG Trigger: GCCCAACCTGGGTACCCGAGAGAATAATGCAGACCAGGTCACCCCTGTTTCCCACATTGGCTGCCCCAACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CAA 72 bp | AGCTTGGCGAACACAGGAGAGCCCTGTTGTGTAGTGTaGGGGCAGCCAATGTGGGAAACAGGGGTGACCTGG | + |
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Preference number: 6 (lower is better) Translates to: SLANTGEPCCVV*GQPMWETGVTW Trigger: CCAGGTCACCCCTGTTTCCCACATTGGCTGCCCCAACACTACACAACAGGGCTCTCCTGTGTTCGCCAAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CAA 90 bp | TTAGCCAGTAGCTTGGCGAACACAGGAGAGCCCTGTTGTGTAGTGTaGGGGCAGCCAATGTGGGAAACAGGGGTGACCTGGTCTGCATTA | + |
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Preference number: 6 (lower is better) Translates to: LASSLANTGEPCCVV*GQPMWETGVTWSAL Trigger: TAATGCAGACCAGGTCACCCCTGTTTCCCACATTGGCTGCCCCAACACTACACAACAGGGCTCTCCTGTGTTCGCCAAGCTACTGGCTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS GCA 72 bp | CAGGGCCAAGTTGTCAAAGTCATCTACCTGAGGCTTTaGTTGCAAAACAAGAGAGACCCAGCCCTGCACCTT | + |
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Preference number: 6 (lower is better) Translates to: QGQVVKVIYLRL*LQNKRDPALHL Trigger: AAGGTGCAGGGCTGGGTCTCTCTTGTTTTGCAAGCAAAGCCTCAGGTAGATGACTTTGACAACTTGGCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 72 bp | GCTTGCAAAACAAGAGAGACCCAGCCCTGCACCTTGTaGCCTGTGTTTGTGAATGTTGGACTGAGCTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: ACKTRETQPCTL*PVFVNVGLSFS Trigger: ACTGAAGCTCAGTCCAACATTCACAAACACAGGCCACAAGGTGCAGGGCTGGGTCTCTCTTGTTTTGCAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CAA 72 bp | TCAGGGCCAAGTTGTCAAAGTCATCTACCTGAGGCTTaGCTTGCAAAACAAGAGAGACCCAGCCCTGCACCT | + |
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Preference number: 6 (lower is better) Translates to: SGPSCQSHLPEA*LAKQERPSPAP Trigger: AGGTGCAGGGCTGGGTCTCTCTTGTTTTGCAAGCAAAGCCTCAGGTAGATGACTTTGACAACTTGGCCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CAA 90 bp | TTCAGAGTTGTATTGCACAACGATGCTTGGTTTTTAGCCAGTAGCTaGGCGAACACAGGAGAGCCCTGTTGTGTAGTGTTGGGGCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: FRVVLHNDAWFLASS*ANTGEPCCVVLGQP Trigger: TGGCTGCCCCAACACTACACAACAGGGCTCTCCTGTGTTCGCCAAGCTACTGGCTAAAAACCAAGCATCGTTGTGCAATACAACTCTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 72 bp | GGTTGTCGGGTTTCACAAGAAAGAGTCCAAAGCTGGTaGTGTTGGGATAAGACAGCTCCCAGTCTCTGTATG | + |
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Preference number: 6 (lower is better) Translates to: GCRVSQERVQSW*CWDKTAPSLCM Trigger: CATACAGAGACTGGGAGCTGTCTTATCCCAACACCACCAGCTTTGGACTCTTTCTTGTGAAACCCGACAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CAA 72 bp | TTTGCTTGCAAAACAAGAGAGACCCAGCCCTGCACCTaGTGGCCTGTGTTTGTGAATGTTGGACTGAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: FACKTRETQPCT*WPVFVNVGLSF Trigger: GAAGCTCAGTCCAACATTCACAAACACAGGCCACAAGGTGCAGGGCTGGGTCTCTCTTGTTTTGCAAGCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS TCA 72 bp | ACCAACTCCTTTTTGTCTTCTTCGTACCTCAGACCTTaGGATAGGTATGAGCTCCCAGCTCCATCTTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: TNSFLSSSYLRP*DRYELPAPSWL Trigger: CAGCCAAGATGGAGCTGGGAGCTCATACCTATCTCAAGGTCTGAGGTACGAAGAAGACAAAAAGGAGTTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CCA 72 bp | CTGTGCCAGTTCAGAGTTGTATTGCACAACGATGCTTaGTTTTTAGCCAGTAGCTTGGCGAACACAGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: LCQFRVVLHNDA*FLASSLANTGE Trigger: CTCTCCTGTGTTCGCCAAGCTACTGGCTAAAAACCAAGCATCGTTGTGCAATACAACTCTGAACTGGCACAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CAA 72 bp | GTATTGCACAACGATGCTTGGTTTTTAGCCAGTAGCTaGGCGAACACAGGAGAGCCCTGTTGTGTAGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: VLHNDAWFLASS*ANTGEPCCVVL Trigger: CAACACTACACAACAGGGCTCTCCTGTGTTCGCCAAGCTACTGGCTAAAAACCAAGCATCGTTGTGCAATAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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| CDS CAA 72 bp | CCAGCTCCATCTTGGCTGTGCCAGTTCAGAGTTGTATaGCACAACGATGCTTGGTTTTTAGCCAGTAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: PAPSWLCQFRVV*HNDAWFLASSL Trigger: CAAGCTACTGGCTAAAAACCAAGCATCGTTGTGCAATACAACTCTGAACTGGCACAGCCAAGATGGAGCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039490.9 |
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