Pregenerated sensors for TNFSF8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028362Ensembl transcript IDs: ENSMUST00000030047.3
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTCTCCATGTATGTCTCAGGAGATGGCAGCAGCTACTCCCCTCAGTaGGAGACAGGATCACTTTGCCCATTACAAGAGGTTAGAGTATCT | + |
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Preference number: 1 (lower is better) Translates to: VSMYVSGDGSSYSPQ*ETGSLCPLQEVRVS Trigger: AGATACTCTAACCTCTTGTAATGGGCAAAGTGATCCTGTCTCTCACTGAGGGGAGTAGCTGCTGCCATCTCCTGAGACATACATGGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 90 bp | ATGAGGAACAGCAGAGCTGGAATCAGGGGGCTGGATGCAAGTCCTTaGGGACTGGATAGGGATTGGTGTTCCCTGAATTTCTACATAACA | + |
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Preference number: 1 (lower is better) Translates to: MRNSRAGIRGLDASP*GLDRDWCSLNFYIT Trigger: TGTTATGTAGAAATTCAGGGAACACCAATCCCTATCCAGTCCTCAAGGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCTGTTCCTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 90 bp | AACCTCAAGCTTGATGGGTCTAAGACCAAGCTTGCATGGTCTCTCTaGTCAGGAGAAGCTGTTAATGTTTGCTGTCCAGAAGCTCTTCCC | + |
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Preference number: 1 (lower is better) Translates to: NLKLDGSKTKLAWSL*SGEAVNVCCPEALP Trigger: GGGAAGAGCTTCTGGACAGCAAACATTAACAGCTTCTCCTGACCAGAGAGACCATGCAAGCTTGGTCTTAGACCCATCAAGCTTGAGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 90 bp | AAATGGAAGGCAGGCATAGACTTCCAGACAGCAGTTTTGACTTCTTaGAGAGGGAGTGGGGTATGGAAGAGTGTGGCTAAGATCTATCTC | + |
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Preference number: 1 (lower is better) Translates to: KWKAGIDFQTAVLTS*RGSGVWKSVAKIYL Trigger: GAGATAGATCTTAGCCACACTCTTCCATACCCCACTCCCTCTCCAAGAAGTCAAAACTGCTGTCTGGAAGTCTATGCCTGCCTTCCATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 90 bp | GGTCTCCTTATTCTCTGCATGGTGTTCTCCACATCTGATTCTATTTaGCCACACACCAGAACTTGTCCTGTACCATGCAACTCCTTTCCC | + |
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Preference number: 1 (lower is better) Translates to: GLLILCMVFSTSDSI*PHTRTCPVPCNSFP Trigger: GGGAAAGGAGTTGCATGGTACAGGACAAGTTCTGGTGTGTGGTCAAATAGAATCAGATGTGGAGAACACCATGCAGAGAATAAGGAGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR GCA 90 bp | ACCAAGCTTGCATGGTCTCTCTGGTCAGGAGAAGCTGTTAATGTTTaGTGTCCAGAAGCTCTTCCCACATTCAAAGTTCTCATTGTCAAG | + |
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Preference number: 1 (lower is better) Translates to: TKLAWSLWSGEAVNV*CPEALPTFKVLIVK Trigger: CTTGACAATGAGAACTTTGAATGTGGGAAGAGCTTCTGGACAGCAAACATTAACAGCTTCTCCTGACCAGAGAGACCATGCAAGCTTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 90 bp | CTTTGCCCATTACAAGAGGTTAGAGTATCTTTCAACAAGGCAGCATaGAAGTCCTTAGGACTTGCTGAGATGACAGTCAGACAGACATTA | + |
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Preference number: 1 (lower is better) Translates to: LCPLQEVRVSFNKAA*KSLGLAEMTVRQTL Trigger: TAATGTCTGTCTGACTGTCATCTCAGCAAGTCCTAAGGACTTCCATGCTGCCTTGTTGAAAGATACTCTAACCTCTTGTAATGGGCAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 90 bp | AAATATGACAGGTCTCCTTATTCTCTGCATGGTGTTCTCCACATCTaGTTCTATTTGACCACACACCAGAACTTGTCCTGTACCATGCAA | + |
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Preference number: 1 (lower is better) Translates to: KYDRSPYSLHGVLHI*FYLTTHQNLSCTMQ Trigger: TTGCATGGTACAGGACAAGTTCTGGTGTGTGGTCAAATAGAATCAGATGTGGAGAACACCATGCAGAGAATAAGGAGACCTGTCATATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 90 bp | AGTAGGTCTCTGTGCACATATCACATTCTTTCCTGTTTGTGCATCTaGAGGAGACTCCACTTTCTAAATCCTGGGTTTGTATTTTTCCAA | + |
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Preference number: 1 (lower is better) Translates to: SRSLCTYHILSCLCI*RRLHFLNPGFVFFQ Trigger: TTGGAAAAATACAAACCCAGGATTTAGAAAGTGGAGTCTCCTTCAGATGCACAAACAGGAAAGAATGTGATATGTGCACAGAGACCTACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 90 bp | ATGAATGTGGTGATAATTAATCTTCACTGTCAAGTTCACAGGATTTaGAATCTACTAGGAGACATACACCCAGCTTGTTCTGTACTAGTG | + |
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Preference number: 1 (lower is better) Translates to: MNVVIINLHCQVHRI*NLLGDIHPACSVLV Trigger: CACTAGTACAGAACAAGCTGGGTGTATGTCTCCTAGTAGATTCCAAATCCTGTGAACTTGACAGTGAAGATTAATTATCACCACATTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGGCCAAGGAGTCCCTGGATGCTGGGGCCGCTTCAGTGTGGCCTGGAGAGCAAGTCCTTGAGGACTaGATAGGGATTGGTGTTCCC | + |
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Preference number: 2 (lower is better) Translates to: RRAKESLDAGAASVWPGEQVLED*IGIGVP Trigger: GGGAACACCAATCCCTATCCAGTCCTCAAGGACTTG...CTCTCCAGGCCACACTGAAGCGGCCCCAGCATCCAGGGACTCCTTGGCCCTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGGCCAAGGAGTCCCTGGATGCTGGGGCCGCTTCAGTGTGGCCTGGAGAGAAGTCCCACAGGGGCTaGTTAACCCTTAAAAGTATC | + |
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Preference number: 2 (lower is better) Translates to: RRAKESLDAGAASVWPGEKSHRG*LTLKSI Trigger: GATACTTTTAAGGGTTAACCAGCCCCTGTGGGACTT...CTCTCCAGGCCACACTGAAGCGGCCCCAGCATCCAGGGACTCCTTGGCCCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR GCA 90 bp | AAGAAGCCTGATGAGGAACAGCAGAGCTGGAATCAGGGGGCTGGATGCAAGTCCCCAAGTAGGTCTCTGTaGACATATCACATTCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: KKPDEEQQSWNQGAGCKSPSRSL*TYHILS Trigger: GGAAAGAATGTGATATGTGCACAGAGACCTACTTGG...GGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CCA 90 bp | AAGAAGCCTGATGAGGAACAGCAGAGCTGGAATCAGGGGGCTGGATGCAAGTCCCAGGGGAAGGAAAAATaGCTCAAGGTCAGTGAATTA | + |
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Preference number: 2 (lower is better) Translates to: KKPDEEQQSWNQGAGCKSQGKEK*LKVSEL Trigger: TAATTCACTGACCTTGAGCCATTTTTCCTTCCCCTG...GGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CCA 90 bp | AAGAAGCCTGATGAGGAACAGCAGAGCTGGAATCAGGGGGCTGGATGCAAGTCCTTAGTTTCAAACTCCTaGGCTGTCTGCTTCCTACTT | + |
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Preference number: 2 (lower is better) Translates to: KKPDEEQQSWNQGAGCKSLVSNS*AVCFLL Trigger: AAGTAGGAAGCAGACAGCCCAGGAGTTTGAAACTAA...GGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR TCA 90 bp | GACTTCCAGACAGCAGTTTTGACTTCTTGGAGAGGGAGTGGGGTATGGAAGAGTTGGAGAGATGTGACCTaGAGCTTTTCACAAAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: DFQTAVLTSWRGSGVWKSWRDVT*SFSQRL Trigger: CAGCCTTTGTGAAAAGCTTCAGGTCACATCTCTCCA...ACTCTTCCATACCCCACTCCCTCTCCAAGAAGTCAAAACTGCTGTCTGGAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR TCA 90 bp | CTTTTCACAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCTCCTGTTTGTGCATCTaGAGGAGACTCCACTTTCTA | + |
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Preference number: 2 (lower is better) Translates to: LFTKAVGCPKKPDEEQQSSCLCI*RRLHFL Trigger: TAGAAAGTGGAGTCTCCTTCAGATGCACAAACAGGA...GCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTGTGAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR TCA 90 bp | CTTTTCACAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCATGGCTCAAGGTCAGTaGATTAGTGGTTATACTGGG | + |
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Preference number: 2 (lower is better) Translates to: LFTKAVGCPKKPDEEQQSMAQGQ*ISGYTG Trigger: CCCAGTATAACCACTAATTCACTGACCTTGAGCCAT...GCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTGTGAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR GCA 90 bp | TGGAGAGGGAGTGGGGTATGGAAGAGTGTGGCTAAGATCTATCTCCATTTAAAAAATCAGGGGGCTGGATaGAAGTCCTTGAGGACTGGA | + |
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Preference number: 2 (lower is better) Translates to: WRGSGVWKSVAKIYLHLKNQGAG*KSLRTG Trigger: TCCAGTCCTCAAGGACTTGCATCCAGCCCCCTGATT...TTTTAAATGGAGATAGATCTTAGCCACACTCTTCCATACCCCACTCCCTCTCCA 48% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR TCA 90 bp | GAACTCCCAGGGGCCCAGACATCAACTCAAATGGTTTGTCAAAAGTCTGTCTCCCACAGTCTCGTCTTCTaGGTTGAAGAAAATATTGGG | + |
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Preference number: 2 (lower is better) Translates to: ELPGAQTSTQMVCQKSVSHSLVF*VEENIG Trigger: CCCAATATTTTCTTCAACTCAGAAGACGAGACTGTG...GGAGACAGACTTTTGACAAACCATTTGAGTTGATGTCTGGGCCCCTGGGAGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR GCA 90 bp | GGAACAGCAGAGCTGGAATCAGGGGGCTGGATGCAAGTCCTTGAGGACTGGATAGGAATACTTAAAAACTaGACACAGAATGGAATTTGG | + |
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Preference number: 2 (lower is better) Translates to: GTAELESGGWMQVLEDWIGILKN*TQNGIW Trigger: CCAAATTCCATTCTGTGTGCAGTTTTTAAGTATTCC...TATCCAGTCCTCAAGGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCTGTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CCA 90 bp | CCAGGGGCCCAGACATCAACTCAAATGGTTTGTCAAAAGTCTGTCTCCCACAATTTCAACAAGGCAGCATaGAAGTCCTTAGGACTTGCT | + |
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Preference number: 2 (lower is better) Translates to: PGAQTSTQMVCQKSVSHNFNKAA*KSLGLA Trigger: AGCAAGTCCTAAGGACTTCCATGCTGCCTTGTTGAA...ATTGTGGGAGACAGACTTTTGACAAACCATTTGAGTTGATGTCTGGGCCCCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CCA 90 bp | CAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCTGGAATCTTTCTAGCCTTTTTCTaGAACTTTGTTCTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: QRLWDVQRSLMRNSRAGIFLAFF*NFVLLS Trigger: GGAAAGGAGAACAAAGTTCCAGAAAAAGGCTAGAAA...GATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR GCA 90 bp | GACTTCCAGACAGCAGTTTTGACTTCTTGGAGAGGGAGTGGGGTATGGAAGAGTAAGTTCACGAGGAAATaGACTGAATTTTCACTAAGC | + |
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Preference number: 2 (lower is better) Translates to: DFQTAVLTSWRGSGVWKSKFTRK*TEFSLS Trigger: GCTTAGTGAAAATTCAGTGCATTTCCTCGTGAACTT...ACTCTTCCATACCCCACTCCCTCTCCAAGAAGTCAAAACTGCTGTCTGGAAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR GCA 90 bp | AGTGAGAGACAGGATCACTTTGCCCATTACAAGAGGTTAGAGTATCTTTCAACACCATCATTTTCCTCATaGCATGGGAGGCCTTCATCT | + |
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Preference number: 2 (lower is better) Translates to: SERQDHFAHYKRLEYLSTPSFSS*HGRPSS Trigger: AGATGAAGGCCTCCCATGGCATGAGGAAAATGATGG...TGTTGAAAGATACTCTAACCTCTTGTAATGGGCAAAGTGATCCTGTCTCTCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR GCA 90 bp | ACTAGAAAGTCCCACAGGGGCTGGTTAACCCTTAAAAGTATCATTAGTTTAGTTAACTCCTGGGCTGTCTaGTTCCTACTTACACTCCAG | + |
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Preference number: 2 (lower is better) Translates to: TRKSHRGWLTLKSIISLVNSWAV*FLLTLQ Trigger: CTGGAGTGTAAGTAGGAAGCAGACAGCCCAGGAGTT...AACTAAACTAATGATACTTTTAAGGGTTAACCAGCCCCTGTGGGACTTTCTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR TCA 90 bp | TGGAGAGGGAGTGGGGTATGGAAGAGTGTGGCTAAGATCTATCTCCATTTAAAATTTCTGAGCACAGCTTaGCAGAGACTGTTATTTGAT | + |
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Preference number: 2 (lower is better) Translates to: WRGSGVWKSVAKIYLHLKFLSTA*QRLLFD Trigger: ATCAAATAACAGTCTCTGTCAAGCTGTGCTCAGAAA...TTTTAAATGGAGATAGATCTTAGCCACACTCTTCCATACCCCACTCCCTCTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CAA 90 bp | TCCAGAAGCTCTTCCCACATTCAAAGTTCTCATTGTCAAGAACTTTaGGGGGAATACTTAAAAACTGCACACAGAATGGAATTTGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: SRSSSHIQSSHCQEL*GEYLKTAHRMEFGQ Trigger: CTGCCCAAATTCCATTCTGTGTGCAGTTTTTAAGTATTCCCCCAAAAGTTCTTGACAATGAGAACTTTGAATGTGGGAAGAGCTTCTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR GCA 90 bp | ACTAGAAAGTCCCACAGGGGCTGGTTAACCCTTAAAAGTATCATTAGTTTAGTTGGTCTCCTTATTCTCTaGATGGTGTTCTCCACATCT | + |
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Preference number: 2 (lower is better) Translates to: TRKSHRGWLTLKSIISLVGLLIL*MVFSTS Trigger: AGATGTGGAGAACACCATGCAGAGAATAAGGAGACC...AACTAAACTAATGATACTTTTAAGGGTTAACCAGCCCCTGTGGGACTTTCTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CCA 90 bp | TGGAGAGGGAGTGGGGTATGGAAGAGTGTGGCTAAGATCTATCTCCATTTAAAATCAGACAGACATTACTaGTACCATCATTTTCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: WRGSGVWKSVAKIYLHLKSDRHY*YHHFPH Trigger: ATGAGGAAAATGATGGTACCAGTAATGTCTGTCTGA...TTTTAAATGGAGATAGATCTTAGCCACACTCTTCCATACCCCACTCCCTCTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CCA 90 bp | AATAGTATTGGATTGATCACAAACTCCTTTGGTTCTGAGGGTCCTAAAGTTATACAAATCCATAGAAGATaGAGACGAAATGGCAGGGGT | + |
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Preference number: 2 (lower is better) Translates to: NSIGLITNSFGSEGPKVIQIHRR*RRNGRG Trigger: ACCCCTGCCATTTCGTCTCCATCTTCTATGGATTTG...TATAACTTTAGGACCCTCAGAACCAAAGGAGTTTGTGATCAATCCAATACTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR TCA 90 bp | AATAGTATTGGATTGATCACAAACTCCTTTGGTTCTGAGGGTCCTAAAGTTATATCTCGTCTTCTGAGTTaGAGAAAATATTGGGGAAAT | + |
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Preference number: 2 (lower is better) Translates to: NSIGLITNSFGSEGPKVISRLLS*RKYWGN Trigger: ATTTCCCCAATATTTTCTTCAACTCAGAAGACGAGA...TATAACTTTAGGACCCTCAGAACCAAAGGAGTTTGTGATCAATCCAATACTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR GCA 72 bp | CAGGGGTACACAAAGGAGGGCCAAGGAGTCCCTGGATaGTGGGGCCGCTTCAGTGTGGCCTGGAGAGATGTG | + |
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Preference number: 3 (lower is better) Translates to: QGYTKEGQGVPG*WGRFSVAWRDV Trigger: CACATCTCTCCAGGCCACACTGAAGCGGCCCCAGCATCCAGGGACTCCTTGGCCCTCCTTTGTGTACCCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 72 bp | GGGTACACAAAGGAGGGCCAAGGAGTCCCTGGATGCTaGGGCCGCTTCAGTGTGGCCTGGAGAGATGTGACC | + |
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Preference number: 3 (lower is better) Translates to: GYTKEGQGVPGC*GRFSVAWRDVT Trigger: GGTCACATCTCTCCAGGCCACACTGAAGCGGCCCCAGCATCCAGGGACTCCTTGGCCCTCCTTTGTGTACCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 72 bp | GATGCTGGGGCCGCTTCAGTGTGGCCTGGAGAGATGTaGCCTGAAGCTTTTCACAAAGGCTGTGGGATGTCC | + |
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Preference number: 3 (lower is better) Translates to: DAGAASVWPGEM*PEAFHKGCGMS Trigger: GGACATCCCACAGCCTTTGTGAAAAGCTTCAGGTCACATCTCTCCAGGCCACACTGAAGCGGCCCCAGCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 72 bp | GGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCTaGAATCAGGGGGCTGGATGCAAGTCCTTGAGGACT | + |
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Preference number: 3 (lower is better) Translates to: GCPKKPDEEQQS*NQGAGCKSLRT Trigger: AGTCCTCAAGGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 72 bp | AGCAGAGCTGGAATCAGGGGGCTGGATGCAAGTCCTTaGGGACTGGATAGGGATTGGTGTTCCCTGAATTTC | + |
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Preference number: 3 (lower is better) Translates to: SRAGIRGLDASP*GLDRDWCSLNF Trigger: GAAATTCAGGGAACACCAATCCCTATCCAGTCCTCAAGGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CAA 90 bp | CTTTTCACAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCGGTCTAAGACCAAGCTaGCATGGTCTCTCTGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: LFTKAVGCPKKPDEEQQSGLRPS*HGLSGQ Trigger: CTGACCAGAGAGACCATGCAAGCTTGGTCTTAGACC...GCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTGTGAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 72 bp | GCAGGCATAGACTTCCAGACAGCAGTTTTGACTTCTTaGAGAGGGAGTGGGGTATGGAAGAGTGTGGCTAAG | + |
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Preference number: 3 (lower is better) Translates to: AGIDFQTAVLTS*RGSGVWKSVAK Trigger: CTTAGCCACACTCTTCCATACCCCACTCCCTCTCCAAGAAGTCAAAACTGCTGTCTGGAAGTCTATGCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 72 bp | TATGTCTCAGGAGATGGCAGCAGCTACTCCCCTCAGTaGGAGACAGGATCACTTTGCCCATTACAAGAGGTT | + |
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Preference number: 3 (lower is better) Translates to: YVSGDGSSYSPQ*ETGSLCPLQEV Trigger: AACCTCTTGTAATGGGCAAAGTGATCCTGTCTCTCACTGAGGGGAGTAGCTGCTGCCATCTCCTGAGACATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR GCA 72 bp | GCATGGTCTCTCTGGTCAGGAGAAGCTGTTAATGTTTaGTGTCCAGAAGCTCTTCCCACATTCAAAGTTCTC | + |
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Preference number: 3 (lower is better) Translates to: AWSLWSGEAVNV*CPEALPTFKVL Trigger: GAGAACTTTGAATGTGGGAAGAGCTTCTGGACAGCAAACATTAACAGCTTCTCCTGACCAGAGAGACCATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 72 bp | CTTGATGGGTCTAAGACCAAGCTTGCATGGTCTCTCTaGTCAGGAGAAGCTGTTAATGTTTGCTGTCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: LDGSKTKLAWSL*SGEAVNVCCPE Trigger: TTCTGGACAGCAAACATTAACAGCTTCTCCTGACCAGAGAGACCATGCAAGCTTGGTCTTAGACCCATCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR CCA 72 bp | AACCTCAAGCTTGATGGGTCTAAGACCAAGCTTGCATaGTCTCTCTGGTCAGGAGAAGCTGTTAATGTTTGC | + |
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Preference number: 3 (lower is better) Translates to: NLKLDGSKTKLA*SLWSGEAVNVC Trigger: GCAAACATTAACAGCTTCTCCTGACCAGAGAGACCATGCAAGCTTGGTCTTAGACCCATCAAGCTTGAGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR-3UTR CAA 90 bp | CTTTTCACAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCTCTTCTTTTTCAGTGTaGTTTTTCTGGGTTCCTCTC | + |
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Preference number: 3 (lower is better) Translates to: LFTKAVGCPKKPDEEQQSSSFSV*FFWVPL Trigger: GAGAGGAACCCAGAAAAACAACACTGAAAAAGAAGA...GCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTGTGAAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 72 bp | TTTCAACAAGGCAGCATGGAAGTCCTTAGGACTTGCTaGGATGACAGTCAGACAGACATTACTGGTACCATC | + |
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Preference number: 3 (lower is better) Translates to: FQQGSMEVLRTC*DDSQTDITGTI Trigger: GATGGTACCAGTAATGTCTGTCTGACTGTCATCTCAGCAAGTCCTAAGGACTTCCATGCTGCCTTGTTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 72 bp | GAATTTCTACATAACAGGAACCCCACCAGGGCTAACTaGCCTCACTCCAGAGGTGGAACATTTCATCAACTT | + |
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Preference number: 3 (lower is better) Translates to: EFLHNRNPTRAN*PHSRGGTFHQL Trigger: AAGTTGATGAAATGTTCCACCTCTGGAGTGAGGTCAGTTAGCCCTGGTGGGGTTCCTGTTATGTAGAAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 72 bp | GTAGGGAGCTCAGCTCCACAGTCTCGTCTTCTGAGTTaGAGAAAATATTGGGGAAATGTAAATCTCATCTCC | + |
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Preference number: 3 (lower is better) Translates to: VGSSAPQSRLLS*RKYWGNVNLIS Trigger: GGAGATGAGATTTACATTTCCCCAATATTTTCTTCAACTCAGAAGACGAGACTGTGGAGCTGAGCTCCCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| 3UTR TCA 72 bp | ATTCTCTGCATGGTGTTCTCCACATCTGATTCTATTTaGCCACACACCAGAACTTGTCCTGTACCATGCAAC | + |
|
Preference number: 3 (lower is better) Translates to: ILCMVFSTSDSI*PHTRTCPVPCN Trigger: GTTGCATGGTACAGGACAAGTTCTGGTGTGTGGTCAAATAGAATCAGATGTGGAGAACACCATGCAGAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR TCA 72 bp | AGGTCTCCTTATTCTCTGCATGGTGTTCTCCACATCTaGTTCTATTTGACCACACACCAGAACTTGTCCTGT | + |
|
Preference number: 3 (lower is better) Translates to: RSPYSLHGVLHI*FYLTTHQNLSC Trigger: ACAGGACAAGTTCTGGTGTGTGGTCAAATAGAATCAGATGTGGAGAACACCATGCAGAGAATAAGGAGACCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR CCA 72 bp | TTACAAGAGGTTAGAGTATCTTTCAACAAGGCAGCATaGAAGTCCTTAGGACTTGCTGAGATGACAGTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: LQEVRVSFNKAA*KSLGLAEMTVR Trigger: TCTGACTGTCATCTCAGCAAGTCCTAAGGACTTCCATGCTGCCTTGTTGAAAGATACTCTAACCTCTTGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR CCA 72 bp | ACAGCAGTTTTGACTTCTTGGAGAGGGAGTGGGGTATaGAAGAGTGTGGCTAAGATCTATCTCCATTTAAAA | + |
|
Preference number: 3 (lower is better) Translates to: TAVLTSWRGSGV*KSVAKIYLHLK Trigger: TTTTAAATGGAGATAGATCTTAGCCACACTCTTCCATACCCCACTCCCTCTCCAAGAAGTCAAAACTGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR-3UTR CAA 90 bp | TGGAGAGGGAGTGGGGTATGGAAGAGTGTGGCTAAGATCTATCTCCATTTAAAACATTCAAAGTTCTCATaGTCAAGAACTTTTGGGGGA | + |
|
Preference number: 3 (lower is better) Translates to: WRGSGVWKSVAKIYLHLKHSKFS*SRTFGG Trigger: TCCCCCAAAAGTTCTTGACAATGAGAACTTTGAATG...TTTTAAATGGAGATAGATCTTAGCCACACTCTTCCATACCCCACTCCCTCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR TCA 72 bp | GATTCATTTGCCCCTCATTTGAGTACAACACAAATATaGCAGGTCTCCTTATTCTCTGCATGGTGTTCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: DSFAPHLSTTQI*QVSLFSAWCSP Trigger: TGGAGAACACCATGCAGAGAATAAGGAGACCTGTCATATTTGTGTTGTACTCAAATGAGGGGCAAATGAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR-3UTR CAA 90 bp | TTTGCCCATTACAAGAGGTTAGAGTATCTTTCAACAAGGCAGCATGGAAGTCCTGTCTCGTCTTCTGAGTaGAAGAAAATATTGGGGAAA | + |
|
Preference number: 3 (lower is better) Translates to: FAHYKRLEYLSTRQHGSPVSSSE*KKILGK Trigger: TTTCCCCAATATTTTCTTCAACTCAGAAGACGAGAC...AGGACTTCCATGCTGCCTTGTTGAAAGATACTCTAACCTCTTGTAATGGGCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR CCA 72 bp | ACCCTTAAAAGTATCATTAGTTTAGTTTCAAACTCCTaGGCTGTCTGCTTCCTACTTACACTCCAGTTGACT | + |
|
Preference number: 3 (lower is better) Translates to: TLKSIISLVSNS*AVCFLLTLQLT Trigger: AGTCAACTGGAGTGTAAGTAGGAAGCAGACAGCCCAGGAGTTTGAAACTAAACTAATGATACTTTTAAGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR-3UTR CAA 90 bp | AATAGTATTGGATTGATCACAAACTCCTTTGGTTCTGAGGGTCCTAAAGTTATAGTCCTAATATTTTCTTaGGCCCATGTTTGGACAGAT | + |
|
Preference number: 3 (lower is better) Translates to: NSIGLITNSFGSEGPKVIVLIFS*AHVWTD Trigger: ATCTGTCCAAACATGGGCCAAAGAAAATATTAGGAC...TATAACTTTAGGACCCTCAGAACCAAAGGAGTTTGTGATCAATCCAATACTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR CCA 72 bp | AATTATTACAGGTGTACTAGAAAGTCCCACAGGGGCTaGTTAACCCTTAAAAGTATCATTAGTTTAGTTTCA | + |
|
Preference number: 3 (lower is better) Translates to: NYYRCTRKSHRG*LTLKSIISLVS Trigger: TGAAACTAAACTAATGATACTTTTAAGGGTTAACCAGCCCCTGTGGGACTTTCTAGTACACCTGTAATAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CCA 90 bp | GAACTCCCAGGGGCCCAGACATCAACTCAAATGGTTTGTCAAAAGTCTGTCTCCCGGGCTGCACCTGCATaGCTGGGTCAGGGGAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: ELPGAQTSTQMVCQKSVSRAAPA*LGQGKE Trigger: CTCCTTCCCCTGACCCAGCCATGCAGGTGCAGCCCG...GGAGACAGACTTTTGACAAACCATTTGAGTTGATGTCTGGGCCCCTGGGAGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR GCA 90 bp | TTATACTGGGACAACTCAACCCCTTCTAGTGCCCAAGTAGGTCTCTGTGCACATAGCCCCACAGCTGCCTaGTTGTTGCAGCCCTGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LYWDNSTPSSAQVGLCAHSPTAA*LLQPWL Trigger: GAGCCAGGGCTGCAACAAGCAGGCAGCTGTGGGGCT...ATGTGCACAGAGACCTACTTGGGCACTAGAAGGGGTTGAGTTGTCCCAGTATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CCA 90 bp | TTTGCCCATTACAAGAGGTTAGAGTATCTTTCAACAAGGCAGCATGGAAGTCCTCTGCACCTGCATGGCTaGGTCAGGGGAAGGAGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: FAHYKRLEYLSTRQHGSPLHLHG*VRGRSP Trigger: GGGGCTCCTTCCCCTGACCCAGCCATGCAGGTGCAG...AGGACTTCCATGCTGCCTTGTTGAAAGATACTCTAACCTCTTGTAATGGGCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR TCA 90 bp | CTTTTCACAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCTTGGAGGTAGGCCCATaGCTTCTTGGATGGAGTACT | + |
|
Preference number: 4 (lower is better) Translates to: LFTKAVGCPKKPDEEQQSLEVGP*LLGWST Trigger: AGTACTCCATCCAAGAAGTCATGGGCCTACCTCCAA...GCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTGTGAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR GCA 90 bp | TTATACTGGGACAACTCAACCCCTTCTAGTGCCCAAGTAGGTCTCTGTGCACATCACTGCACGAGGAACTaGAGTTGGCAAACGATGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LYWDNSTPSSAQVGLCAHHCTRN*SWQTMK Trigger: CTTCATCGTTTGCCAACTGCAGTTCCTCGTGCAGTG...ATGTGCACAGAGACCTACTTGGGCACTAGAAGGGGTTGAGTTGTCCCAGTATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR GCA 90 bp | AGCTCCACAGTCTCGTCTTCTGAGTTGAAGAAAATATTGGGGAAATGTAAATCTTTCTCCAGGGCCTCGTaGTTCTCCAGGGGCTGGCTA | + |
|
Preference number: 4 (lower is better) Translates to: SSTVSSSELKKILGKCKSFSRAS*FSRGWL Trigger: TAGCCAGCCCCTGGAGAAGCACGAGGCCCTGGAGAA...AGATTTACATTTCCCCAATATTTTCTTCAACTCAGAAGACGAGACTGTGGAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CCA 90 bp | CTTTTCACAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCACGAGGAACTGCAGTTaGCAAACGATGAAGTACAAG | + |
|
Preference number: 4 (lower is better) Translates to: LFTKAVGCPKKPDEEQQSTRNCS*QTMKYK Trigger: CTTGTACTTCATCGTTTGCCAACTGCAGTTCCTCGT...GCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTGTGAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR CAA 72 bp | GTAGAAACCTCAAGCTTGATGGGTCTAAGACCAAGCTaGCATGGTCTCTCTGGTCAGGAGAAGCTGTTAATG | + |
|
Preference number: 4 (lower is better) Translates to: VETSSLMGLRPS*HGLSGQEKLLM Trigger: CATTAACAGCTTCTCCTGACCAGAGAGACCATGCAAGCTTGGTCTTAGACCCATCAAGCTTGAGGTTTCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR CAA 72 bp | AGAACTCCCAGGGGCCCAGACATCAACTCAAATGGTTaGTCAAAAGTCTGTCTCCCACAATGTAGAAACCTC | + |
|
Preference number: 4 (lower is better) Translates to: RTPRGPDINSNG*SKVCLPQCRNL Trigger: GAGGTTTCTACATTGTGGGAGACAGACTTTTGACAAACCATTTGAGTTGATGTCTGGGCCCCTGGGAGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CCA 90 bp | GACTTCCAGACAGCAGTTTTGACTTCTTGGAGAGGGAGTGGGGTATGGAAGAGTCTTCTCAGTTGTATTTaGAGTGGAGTCCTTTTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: DFQTAVLTSWRGSGVWKSLLSCI*SGVLFL Trigger: CAGAAAAAGGACTCCACTCCAAATACAACTGAGAAG...ACTCTTCCATACCCCACTCCCTCTCCAAGAAGTCAAAACTGCTGTCTGGAAGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR TCA 90 bp | ACTAGAAAGTCCCACAGGGGCTGGTTAACCCTTAAAAGTATCATTAGTTTAGTTGTCAGGTCCACAGAATaGTTTGAGCACTGCACGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TRKSHRGWLTLKSIISLVVRSTE*FEHCTR Trigger: CCTCGTGCAGTGCTCAAATCATTCTGTGGACCTGAC...AACTAAACTAATGATACTTTTAAGGGTTAACCAGCCCCTGTGGGACTTTCTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CCA 90 bp | TTTCTTTGGCCCATGTTTGGACAGATGAAGTACTGTATGGTAGACAGCATTTTCTACAAGCCAGGGAATTaGACTATCAGGTTCCCGTCC | + |
|
Preference number: 4 (lower is better) Translates to: FLWPMFGQMKYCMVDSIFYKPGN*TIRFPS Trigger: GGACGGGAACCTGATAGTCCAATTCCCTGGCTTGTA...GAAAATGCTGTCTACCATACAGTACTTCATCTGTCCAAACATGGGCCAAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR TCA 90 bp | AGTGAGAGACAGGATCACTTTGCCCATTACAAGAGGTTAGAGTATCTTTCAACAGCAGTTGGCAAACGATaGAGTACAAGCCAGGGAATT | + |
|
Preference number: 4 (lower is better) Translates to: SERQDHFAHYKRLEYLSTAVGKR*STSQGI Trigger: AATTCCCTGGCTTGTACTTCATCGTTTGCCAACTGC...TGTTGAAAGATACTCTAACCTCTTGTAATGGGCAAAGTGATCCTGTCTCTCACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CCA 90 bp | TTTCTTTGGCCCATGTTTGGACAGATGAAGTACTGTATGGTAGACAGCATTTTCAGGCCCATGACTTCTTaGATGGAGTACTTTTCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: FLWPMFGQMKYCMVDSIFRPMTS*MEYFSG Trigger: CCCTGAAAAGTACTCCATCCAAGAAGTCATGGGCCT...GAAAATGCTGTCTACCATACAGTACTTCATCTGTCCAAACATGGGCCAAAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR TCA 90 bp | TGGAGAGGGAGTGGGGTATGGAAGAGTGTGGCTAAGATCTATCTCCATTTAAAAACAGTTTGGTATTGTTaGGATGCTTTGACACTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: WRGSGVWKSVAKIYLHLKTVWYC*DALTLG Trigger: TCCAAGTGTCAAAGCATCTCAACAATACCAAACTGT...TTTTAAATGGAGATAGATCTTAGCCACACTCTTCCATACCCCACTCCCTCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR GCA 90 bp | TTTCTTTGGCCCATGTTTGGACAGATGAAGTACTGTATGGTAGACAGCATTTTCGAATTGATGAGGAGCTaGAATGTCAGGTCCACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: FLWPMFGQMKYCMVDSIFELMRS*NVRSTE Trigger: TTCTGTGGACCTGACATTGCAGCTCCTCATCAATTC...GAAAATGCTGTCTACCATACAGTACTTCATCTGTCCAAACATGGGCCAAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CCA 90 bp | TGGAGAGGGAGTGGGGTATGGAAGAGTGTGGCTAAGATCTATCTCCATTTAAAACAGTTGTATTTGGAGTaGAGTCCTTTTTCTGGACTA | + |
|
Preference number: 4 (lower is better) Translates to: WRGSGVWKSVAKIYLHLKQLYLE*SPFSGL Trigger: TAGTCCAGAAAAAGGACTCCACTCCAAATACAACTG...TTTTAAATGGAGATAGATCTTAGCCACACTCTTCCATACCCCACTCCCTCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CCA 90 bp | GTTGTCCTAATATTTTCTTTGGCCCATGTTTGGACAGATGAAGTACTGTATGGTGTGGAGTCCTTTTTCTaGACTACCAGTACCAGAATG | + |
|
Preference number: 4 (lower is better) Translates to: VVLIFSLAHVWTDEVLYGVESFF*TTSTRM Trigger: CATTCTGGTACTGGTAGTCCAGAAAAAGGACTCCAC...ACCATACAGTACTTCATCTGTCCAAACATGGGCCAAAGAAAATATTAGGACAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| 3UTR CAA 72 bp | GACAGAAAGAGAAGTGCACTAACTCACATGCTTAGTTaGAGTTGTCCTAATATTTTCTTTGGCCCATGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: DRKRSALTHMLS*SCPNIFFGPCL Trigger: CAAACATGGGCCAAAGAAAATATTAGGACAACTCAAACTAAGCATGTGAGTTAGTGCACTTCTCTTTCTGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR TCA 90 bp | AATAGTATTGGATTGATCACAAACTCCTTTGGTTCTGAGGGTCCTAAAGTTATAACAGAAGAGATCCTCTaGGCAATTTCCTCCTTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: NSIGLITNSFGSEGPKVITEEIL*AISSFK Trigger: CTTAAAGGAGGAAATTGCTCAGAGGATCTCTTCTGT...TATAACTTTAGGACCCTCAGAACCAAAGGAGTTTGTGATCAATCCAATACTATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CAA 90 bp | CAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCTGGAATCAGAAGTAGCTGCGACTaGTGCTTCTCCAGGGCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: QRLWDVQRSLMRNSRAGIRSSCD*CFSRAS Trigger: CGAGGCCCTGGAGAAGCACAAGTCGCAGCTACTTCT...GATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CAA 90 bp | GGAACAGCAGAGCTGGAATCAGGGGGCTGGATGCAAGTCCTTGAGGACTGGATAGTACAAGCCAGGGAATaGGACTATCAGGTTCCCGTC | + |
|
Preference number: 5 (lower is better) Translates to: GTAELESGGWMQVLEDWIVQARE*DYQVPV Trigger: GACGGGAACCTGATAGTCCAATTCCCTGGCTTGTAC...TATCCAGTCCTCAAGGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCTGTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS CCA 90 bp | ACGAGGAACTGCAGTTGGCAAACGATGAAGTACAAGCCAGGGAATTaGACTATCAGGTTCCCGTCCTGGTATATGAGTCCGTGGATGGTG | + |
|
Preference number: 5 (lower is better) Translates to: TRNCSWQTMKYKPGN*TIRFPSWYMSPWMV Trigger: CACCATCCACGGACTCATATACCAGGACGGGAACCTGATAGTCCAATTCCCTGGCTTGTACTTCATCGTTTGCCAACTGCAGTTCCTCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS TCA 90 bp | CAGAATGATTTGAGCACTGCACGAGGAACTGCAGTTGGCAAACGATaGAGTACAAGCCAGGGAATTGGACTATCAGGTTCCCGTCCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: QNDLSTARGTAVGKR*STSQGIGLSGSRPG Trigger: ACCAGGACGGGAACCTGATAGTCCAATTCCCTGGCTTGTACTTCATCGTTTGCCAACTGCAGTTCCTCGTGCAGTGCTCAAATCATTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS CCA 90 bp | ACGATGAAGTACAAGCCAGGGAATTGGACTATCAGGTTCCCGTCCTaGTATATGAGTCCGTGGATGGTGCCATCTTCGTTCCATGACAGT | + |
|
Preference number: 5 (lower is better) Translates to: TMKYKPGNWTIRFPS*YMSPWMVPSSFHDS Trigger: ACTGTCATGGAACGAAGATGGCACCATCCACGGACTCATATACCAGGACGGGAACCTGATAGTCCAATTCCCTGGCTTGTACTTCATCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS TCA 90 bp | GTCCGTGGATGGTGCCATCTTCGTTCCATGACAGTTTGGTATTGTTaGGATGCTTTGACACTTGGAGGTAGGCCCATGACTTCTTGGATG | + |
|
Preference number: 5 (lower is better) Translates to: VRGWCHLRSMTVWYC*DALTLGGRPMTSWM Trigger: CATCCAAGAAGTCATGGGCCTACCTCCAAGTGTCAAAGCATCTCAACAATACCAAACTGTCATGGAACGAAGATGGCACCATCCACGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS TCA 90 bp | AGTACAAGCCAGGGAATTGGACTATCAGGTTCCCGTCCTGGTATATaGGTCCGTGGATGGTGCCATCTTCGTTCCATGACAGTTTGGTAT | + |
|
Preference number: 5 (lower is better) Translates to: STSQGIGLSGSRPGI*VRGWCHLRSMTVWY Trigger: ATACCAAACTGTCATGGAACGAAGATGGCACCATCCACGGACTCATATACCAGGACGGGAACCTGATAGTCCAATTCCCTGGCTTGTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS CCA 90 bp | CCAGGGAATTGGACTATCAGGTTCCCGTCCTGGTATATGAGTCCGTaGATGGTGCCATCTTCGTTCCATGACAGTTTGGTATTGTTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: PGNWTIRFPSWYMSP*MVPSSFHDSLVLLR Trigger: TCTCAACAATACCAAACTGTCATGGAACGAAGATGGCACCATCCACGGACTCATATACCAGGACGGGAACCTGATAGTCCAATTCCCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CAA 90 bp | GAACTCCCAGGGGCCCAGACATCAACTCAAATGGTTTGTCAAAAGTCTGTCTCCCACGAGGAACTGCAGTaGGCAAACGATGAAGTACAA | + |
|
Preference number: 5 (lower is better) Translates to: ELPGAQTSTQMVCQKSVSHEELQ*ANDEVQ Trigger: TTGTACTTCATCGTTTGCCAACTGCAGTTCCTCGTG...GGAGACAGACTTTTGACAAACCATTTGAGTTGATGTCTGGGCCCCTGGGAGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CAA 90 bp | AAGAAGCCTGATGAGGAACAGCAGAGCTGGAATCAGGGGGCTGGATGCAAGTCCTTTTTGATCTTGGAATaGATGAGGAGCTGCAATGTC | + |
|
Preference number: 5 (lower is better) Translates to: KKPDEEQQSWNQGAGCKSFLILE*MRSCNV Trigger: GACATTGCAGCTCCTCATCAATTCCAAGATCAAAAA...GGACTTGCATCCAGCCCCCTGATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CAA 90 bp | CAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCTGGAATCACCAACGTCTGCTTTTaGATCTTGGAATTGATGAGG | + |
|
Preference number: 5 (lower is better) Translates to: QRLWDVQRSLMRNSRAGITNVCF*ILELMR Trigger: CCTCATCAATTCCAAGATCAAAAAGCAGACGTTGGT...GATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS TCA 90 bp | CTTGGAATTGATGAGGAGCTGCAATGTCAGGTCCACAGAATGATTTaGGCACTGCACGAGGAACTGCAGTTGGCAAACGATGAAGTACAA | + |
|
Preference number: 5 (lower is better) Translates to: LGIDEELQCQVHRMI*ALHEELQLANDEVQ Trigger: TTGTACTTCATCGTTTGCCAACTGCAGTTCCTCGTGCAGTGCTCAAATCATTCTGTGGACCTGACATTGCAGCTCCTCATCAATTCCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS TCA 90 bp | TTGATCTTGGAATTGATGAGGAGCTGCAATGTCAGGTCCACAGAATaGTTTGAGCACTGCACGAGGAACTGCAGTTGGCAAACGATGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LILELMRSCNVRSTE*FEHCTRNCSWQTMK Trigger: CTTCATCGTTTGCCAACTGCAGTTCCTCGTGCAGTGCTCAAATCATTCTGTGGACCTGACATTGCAGCTCCTCATCAATTCCAAGATCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CAA 90 bp | ACAAAGGCTGTGGGATGTCCAAAGAAGCCTGATGAGGAACAGCAGAGCTGGAATCATGACAGTTTGGTATaGTTGAGATGCTTTGACACT | + |
|
Preference number: 5 (lower is better) Translates to: TKAVGCPKKPDEEQQSWNHDSLV*LRCFDT Trigger: AGTGTCAAAGCATCTCAACAATACCAAACTGTCATG...ATTCCAGCTCTGCTGTTCCTCATCAGGCTTCTTTGGACATCCCACAGCCTTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS-3UTR CAA 90 bp | TTATACTGGGACAACTCAACCCCTTCTAGTGCCCAAGTAGGTCTCTGTGCACATCAAGAGGGAAAGTGTTaGTATCCACATACTGGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: LYWDNSTPSSAQVGLCAHQEGKC*YPHTGN Trigger: ATTTCCAGTATGTGGATACAAACACTTTCCCTCTTG...ATGTGCACAGAGACCTACTTGGGCACTAGAAGGGGTTGAGTTGTCCCAGTATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS CCA 72 bp | TTGTGCTTCTCCAGGGCCTCGTGCTTCTCCAGGGGCTaGCTACCGAGCCGGGCTGCACCTGCATGGCTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: LCFSRASCFSRG*LPSRAAPAWLG Trigger: ACCCAGCCATGCAGGTGCAGCCCGGCTCGGTAGCCAGCCCCTGGAGAAGCACGAGGCCCTGGAGAAGCACAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS GCA 72 bp | AGAAGTAGCTGCGACTTGTGCTTCTCCAGGGCCTCGTaGTTCTCCAGGGGCTGGCTACCGAGCCGGGCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: RSSCDLCFSRAS*FSRGWLPSRAA Trigger: TGCAGCCCGGCTCGGTAGCCAGCCCCTGGAGAAGCACGAGGCCCTGGAGAAGCACAAGTCGCAGCTACTTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
||
| CDS TCA 72 bp | CAGGGAATTGGACTATCAGGTTCCCGTCCTGGTATATaGGTCCGTGGATGGTGCCATCTTCGTTCCATGACA | + |
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Preference number: 6 (lower is better) Translates to: QGIGLSGSRPGI*VRGWCHLRSMT Trigger: TGTCATGGAACGAAGATGGCACCATCCACGGACTCATATACCAGGACGGGAACCTGATAGTCCAATTCCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS CCA 72 bp | TACAAGCCAGGGAATTGGACTATCAGGTTCCCGTCCTaGTATATGAGTCCGTGGATGGTGCCATCTTCGTTC | + |
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Preference number: 6 (lower is better) Translates to: YKPGNWTIRFPS*YMSPWMVPSSF Trigger: GAACGAAGATGGCACCATCCACGGACTCATATACCAGGACGGGAACCTGATAGTCCAATTCCCTGGCTTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS TCA 72 bp | TTGAGCACTGCACGAGGAACTGCAGTTGGCAAACGATaGAGTACAAGCCAGGGAATTGGACTATCAGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LSTARGTAVGKR*STSQGIGLSGS Trigger: GGAACCTGATAGTCCAATTCCCTGGCTTGTACTTCATCGTTTGCCAACTGCAGTTCCTCGTGCAGTGCTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS TCA 72 bp | GATGAGGAGCTGCAATGTCAGGTCCACAGAATGATTTaGGCACTGCACGAGGAACTGCAGTTGGCAAACGAT | + |
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Preference number: 6 (lower is better) Translates to: DEELQCQVHRMI*ALHEELQLAND Trigger: ATCGTTTGCCAACTGCAGTTCCTCGTGCAGTGCTCAAATCATTCTGTGGACCTGACATTGCAGCTCCTCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS CCA 72 bp | TGCAGTTGGCAAACGATGAAGTACAAGCCAGGGAATTaGACTATCAGGTTCCCGTCCTGGTATATGAGTCCG | + |
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Preference number: 6 (lower is better) Translates to: CSWQTMKYKPGN*TIRFPSWYMSP Trigger: CGGACTCATATACCAGGACGGGAACCTGATAGTCCAATTCCCTGGCTTGTACTTCATCGTTTGCCAACTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS TCA 72 bp | GAATTGATGAGGAGCTGCAATGTCAGGTCCACAGAATaGTTTGAGCACTGCACGAGGAACTGCAGTTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: ELMRSCNVRSTE*FEHCTRNCSWQ Trigger: TTGCCAACTGCAGTTCCTCGTGCAGTGCTCAAATCATTCTGTGGACCTGACATTGCAGCTCCTCATCAATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS CCA 72 bp | GCCTTCTCAGTTGTATTTGGAGTGGAGTCCTTTTTCTaGACTACCAGTACCAGAATGATCGCCACTGCCACA | + |
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Preference number: 6 (lower is better) Translates to: AFSVVFGVESFF*TTSTRMIATAT Trigger: TGTGGCAGTGGCGATCATTCTGGTACTGGTAGTCCAGAAAAAGGACTCCACTCCAAATACAACTGAGAAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS TCA 72 bp | TGGTGCCATCTTCGTTCCATGACAGTTTGGTATTGTTaGGATGCTTTGACACTTGGAGGTAGGCCCATGACT | + |
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Preference number: 6 (lower is better) Translates to: WCHLRSMTVWYC*DALTLGGRPMT Trigger: AGTCATGGGCCTACCTCCAAGTGTCAAAGCATCTCAACAATACCAAACTGTCATGGAACGAAGATGGCACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS CCA 72 bp | GATGCTTTGACACTTGGAGGTAGGCCCATGACTTCTTaGATGGAGTACTTTTCAGGGTACAGAAGAGATCCT | + |
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Preference number: 6 (lower is better) Translates to: DALTLGGRPMTS*MEYFSGYRRDP Trigger: AGGATCTCTTCTGTACCCTGAAAAGTACTCCATCCAAGAAGTCATGGGCCTACCTCCAAGTGTCAAAGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS CAA 72 bp | ACTCCAGACTCACACACTGTTACCAACGTCTGCTTTTaGATCTTGGAATTGATGAGGAGCTGCAATGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: TPDSHTVTNVCF*ILELMRSCNVR Trigger: CCTGACATTGCAGCTCCTCATCAATTCCAAGATCAAAAAGCAGACGTTGGTAACAGTGTGTGAGTCTGGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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| CDS CCA 72 bp | ACATTATCAAGAGGGAAAGTGTTTGTATCCACATACTaGAAATTATCCACCCTGACTGATATGGTAGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: TLSRGKVFVSTY*KLSTLTDMVEL Trigger: CAACTCTACCATATCAGTCAGGGTGGATAATTTCCAGTATGTGGATACAAACACTTTCCCTCTTGATAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030047.3 |
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