Pregenerated sensors for TNFSF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026700Ensembl transcript IDs: ENSMUST00000028024.5
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTATCCTaGGACATCCAGTTCACTCTCATCCTGTATAATAAAAATAGCCCT | + |
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Preference number: 1 (lower is better) Translates to: NSLAQTVKNPSWPLS*DIQFTLILYNKNSP Trigger: AGGGCTATTTTTATTATACAGGATGAGAGTGAACTGGATGTCTCAGGATAAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR CAA 90 bp | GCACTCCAGCTCCTACTGGCCGGTGGACACCACCCTTTCCATGTTTaGCTTTCTTTTGACAACATCAAAATTCTAGAAGATAGCAATCAA | + |
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Preference number: 2 (lower is better) Translates to: ALQLLLAGGHHPFHV*LSFDNIKILEDSNQ Trigger: TTGATTGCTATCTTCTAGAATTTTGATGTTGTCAAAAGAAAGCAAAACATGGAAAGGGTGGTGTCCACCGGCCAGTAGGAGCTGGAGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR-3UTR TCA 90 bp | AACCTACAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTATCTTCAGTCACATCTCATaGGCAGGATGCACTCATCTC | + |
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Preference number: 2 (lower is better) Translates to: NLQKQSCSDCEKSFLAFIFSHIS*AGCTHL Trigger: GAGATGAGTGCATCCTGCTCATGAGATGTGACTGAA...GATAAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTGTAGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR-3UTR TCA 90 bp | GAGAACCTACAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTTTAAATATCCCTGAGTaGGGAAGTAGGGTAGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: ENLQKQSCSDCEKSFLAFLNIPE*GSRVGS Trigger: AGAGCCTACCCTACTTCCTCACTCAGGGATATTTAA...AAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTGTAGGTTCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR-3UTR GCA 90 bp | TTCAGGGGCCAGGAAAAGAGTGCACCTTGTTGCTTAAACAGTCATCTTCAAGTCACCCTTTCCATGTTTTaGTTTCTTTTGACAACATCA | + |
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Preference number: 2 (lower is better) Translates to: FRGQEKSAPCCLNSHLQVTLSMF*FLLTTS Trigger: TGATGTTGTCAAAAGAAAGCAAAACATGGAAAGGGT...GACTTGAAGATGACTGTTTAAGCAACAAGGTGCACTCTTTTCCTGGCCCCTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR-3UTR GCA 90 bp | AACCTACAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTATCGTCATCTTCAAGTCCTaGTTTCCACGGGGTAATCTT | + |
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Preference number: 2 (lower is better) Translates to: NLQKQSCSDCEKSFLAFIVIFKS*FPRGNL Trigger: AAGATTACCCCGTGGAAAGCAGGACTTGAAGATGAC...GATAAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTGTAGGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR TCA 72 bp | GGAAGTAGGGTAGGCTCTGCATTCAGTCACATCTCATaGGCAGGATGCACTCATCTCTCTCGAGAAAGAACC | + |
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Preference number: 3 (lower is better) Translates to: GSRVGSAFSHIS*AGCTHLSRERT Trigger: GGTTCTTTCTCGAGAGAGATGAGTGCATCCTGCTCATGAGATGTGACTGAATGCAGAGCCTACCCTACTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGGGCCAGGAAAAGAGTGCACCTTGTTGCTTAAACAGTCATCTTCAAGTCTCTATCACCTTAACCTaGAAGAGAGCACTCCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: FRGQEKSAPCCLNSHLQVSITLT*KRALQL Trigger: GAGCTGGAGTGCTCTCTTCAAGGTTAAGGTGATAGA...GACTTGAAGATGACTGTTTAAGCAACAAGGTGCACTCTTTTCCTGGCCCCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR TCA 72 bp | TCAAGCGCCATTTTCAGTGGCAGATGTTTATTACGATaGGCTTCTGACCGACAGAAGCAATGTGTCTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: SSAIFSGRCLLR*ASDRQKQCVLK Trigger: CTTCAAGACACATTGCTTCTGTCGGTCAGAAGCTCATCGTAATAAACATCTGCCACTGAAAATGGCGCTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGGGCCAGGAAAAGAGTGCACCTTGTTGCTTAAACAGTCATCTTCAAGTCCACCCTTTCCATGTTTaGCTTTCTTTTGACAACATC | + |
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Preference number: 3 (lower is better) Translates to: FRGQEKSAPCCLNSHLQVHPFHV*LSFDNI Trigger: GATGTTGTCAAAAGAAAGCAAAACATGGAAAGGGTG...GACTTGAAGATGACTGTTTAAGCAACAAGGTGCACTCTTTTCCTGGCCCCTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR TCA 72 bp | GAACAGCTCTTAGCAGGCTCAAGGCAATCCTGGGAATaGGAGGTCAACTGTTATGTAAGACATGATTTAAAT | + |
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Preference number: 3 (lower is better) Translates to: EQLLAGSRQSWE*EVNCYVRHDLN Trigger: ATTTAAATCATGTCTTACATAACAGTTGACCTCTCATTCCCAGGATTGCCTTGAGCCTGCTAAGAGCTGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR TCA 72 bp | CATTTTCAGTGGCAGATGTTTATTACGATGAGCTTCTaGCCGACAGAAGCAATGTGTCTTGAAGAGACATTT | + |
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Preference number: 3 (lower is better) Translates to: HFQWQMFITMSF*PTEAMCLEETF Trigger: AAATGTCTCTTCAAGACACATTGCTTCTGTCGGTCAGAAGCTCATCGTAATAAACATCTGCCACTGAAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR TCA 72 bp | GCTCAGACTGTGAAAAATCCTTCTTGGCCTTTATCCTaGGACATCCAGTTCACTCTCATCCTGTATAATAAA | + |
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Preference number: 3 (lower is better) Translates to: AQTVKNPSWPLS*DIQFTLILYNK Trigger: TTTATTATACAGGATGAGAGTGAACTGGATGTCTCAGGATAAAGGCCAAGAAGGATTTTTCACAGTCTGAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR-3UTR CAA 90 bp | GAGAACCTACAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTTCCCTAGGTAGTTCTTaGAAGGAAGTTGTCTTTTAT | + |
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Preference number: 3 (lower is better) Translates to: ENLQKQSCSDCEKSFLAFSLGSS*KEVVFY Trigger: ATAAAAGACAACTTCCTTCAAAGAACTACCTAGGGA...AAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTGTAGGTTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR GCA 90 bp | CCCAGAACAGCTCTTAGCAGGCTCAAGGCAATCCTGGGAATGAGAGGTCAACTGGCACAGAAGCATCCCTaGTCCCTTGATCCCAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: PRTALSRLKAILGMRGQLAQKHP*SLDPRD Trigger: GTCTCTGGGATCAAGGGAGCAGGGATGCTTCTGTGC...CAGTTGACCTCTCATTCCCAGGATTGCCTTGAGCCTGCTAAGAGCTGTTCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR GCA 90 bp | GTCACATCTCATGAGCAGGATGCACTCATCTCTCTCGAGAAAGAACCTGTGTCCGATTGGAGGGTCCTTTaGCGGAGAGGAAGAGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: VTSHEQDALISLEKEPVSDWRVL*RRGREL Trigger: CAACTCTCTTCCTCTCCGGCAAAGGACCCTCCAATC...GGACACAGGTTCTTTCTCGAGAGAGATGAGTGCATCCTGCTCATGAGATGTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR CCA 90 bp | GCACTCCAGCTCCTACTGGCCGGTGGACACCACCCTTTCCATGTTTTGCTTTCTTCCCCATCATTTATCTaGAGGTGTTCGCAGAGAGTA | + |
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Preference number: 4 (lower is better) Translates to: ALQLLLAGGHHPFHVLLSSPSFI*RCSQRV Trigger: TACTCTCTGCGAACACCTCCAGATAAATGATGGGGA...AGAAAGCAAAACATGGAAAGGGTGGTGTCCACCGGCCAGTAGGAGCTGGAGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR TCA 90 bp | GTCACATCTCATGAGCAGGATGCACTCATCTCTCTCGAGAAAGAACCTGTGTCCGCGTCTTCTTCCACTTaGATCTTGGCCTTGATCCGT | + |
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Preference number: 4 (lower is better) Translates to: VTSHEQDALISLEKEPVSASSST*ILALIR Trigger: ACGGATCAAGGCCAAGATTCAAGTGGAAGAAGACGC...GGACACAGGTTCTTTCTCGAGAGAGATGAGTGCATCCTGCTCATGAGATGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR TCA 90 bp | GAGAACCTACAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTAATGAAGGTCAATCTTaGCCTCCTGGAAAAAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: ENLQKQSCSDCEKSFLAFNEGQS*PPGKRS Trigger: GCTCCTTTTTCCAGGAGGTCAAGATTGACCTTCATT...AAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTGTAGGTTCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR GCA 90 bp | CCCCATGAGATGAGAGACAGTTTTAGGCAACATGTAAACTTCTATCACCTTAACGAGCTGATGAATAGTTaGCCATCCTCACATCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: PHEMRDSFRQHVNFYHLNELMNS*PSSHLV Trigger: TACCAGATGTGAGGATGGGCAACTATTCATCAGCTC...GTTAAGGTGATAGAAGTTTACATGTTGCCTAAAACTGTCTCTCATCTCATGGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| 3UTR CAA 72 bp | CAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTaGGCCTTTATCCTGAGACATCCAGTTCACTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: QKQSCSDCEKSF*AFILRHPVHSH Trigger: ATGAGAGTGAACTGGATGTCTCAGGATAAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR CCA 90 bp | AACCTACAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTATCACCATCGTTCAGCATTaGAATAGAGATGGGATTATG | + |
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Preference number: 4 (lower is better) Translates to: NLQKQSCSDCEKSFLAFITIVQH*NRDGIM Trigger: CATAATCCCATCTCTATTCCAATGCTGAACGATGGT...GATAAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTGTAGGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR CAA 90 bp | GCACTCCAGCTCCTACTGGCCGGTGGACACCACCCTTTCCATGTTTTGCTTTCTTGCTCCTCTGAGTCTTaGGATTGGAGGGTCCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: ALQLLLAGGHHPFHVLLSCSSES*DWRVLC Trigger: GCAAAGGACCCTCCAATCCAAAGACTCAGAGGAGCA...AGAAAGCAAAACATGGAAAGGGTGGTGTCCACCGGCCAGTAGGAGCTGGAGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS GCA 90 bp | ACATCTGGTAACTGCTCCTCTGAGTCTTTGGATTGGAGGGTCCTTTaGCGGAGAGGAAGAGAGTTGCAGGCAGACATAGATGAAGCACAG | + |
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Preference number: 5 (lower is better) Translates to: TSGNCSSESLDWRVL*RRGRELQADIDEAQ Trigger: CTGTGCTTCATCTATGTCTGCCTGCAACTCTCTTCCTCTCCGGCAAAGGACCCTCCAATCCAAAGACTCAGAGGAGCAGTTACCAGATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR CAA 90 bp | GAGAACCTACAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTAGCATCCCTGCTCCCTaGATCCCAGAGACCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: ENLQKQSCSDCEKSFLAFSIPAP*IPETTS Trigger: GCTGGTGGTCTCTGGGATCAAGGGAGCAGGGATGCT...AAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTGTAGGTTCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS-3UTR CAA 90 bp | GAGAACCTACAAAAACAGTCTTGCTCAGACTGTGAAAAATCCTTCTTGGCCTTTAGCGTCTTCTTCCACTaGAATCTTGGCCTTGATCCG | + |
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Preference number: 5 (lower is better) Translates to: ENLQKQSCSDCEKSFLAFSVFFH*NLGLDP Trigger: CGGATCAAGGCCAAGATTCAAGTGGAAGAAGACGCT...AAAGGCCAAGAAGGATTTTTCACAGTCTGAGCAAGACTGTTTTTGTAGGTTCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS TCA 90 bp | CCATCGCACTTGATGACAACCGAATTGTTCTGCACCTCCATAGTTTaGTACTCATTCTTGTATGAGCTGATGAATAGTTGCCCATCCTCA | + |
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Preference number: 5 (lower is better) Translates to: PSHLMTTELFCTSIV*YSFLYELMNSCPSS Trigger: TGAGGATGGGCAACTATTCATCAGCTCATACAAGAATGAGTATCAAACTATGGAGGTGCAGAACAATTCGGTTGTCATCAAGTGCGATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS CAA 72 bp | CCCATCCTCACATCTGGTAACTGCTCCTCTGAGTCTTaGGATTGGAGGGTCCTTTGCCGGAGAGGAAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: PILTSGNCSSES*DWRVLCRRGRE Trigger: CTCTCTTCCTCTCCGGCAAAGGACCCTCCAATCCAAAGACTCAGAGGAGCAGTTACCAGATGTGAGGATGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS CAA 90 bp | GCTCCCTTGATCCCAGAGACCACCAGCCTTAGCGTCTTCTTCCACTaGAATCTTGGCCTTGATCCGTTTTCCAGATTCTCATCCAGGGGT | + |
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Preference number: 6 (lower is better) Translates to: APLIPETTSLSVFFH*NLGLDPFSRFSSRG Trigger: ACCCCTGGATGAGAATCTGGAAAACGGATCAAGGCCAAGATTCAAGTGGAAGAAGACGCTAAGGCTGGTGGTCTCTGGGATCAAGGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS GCA 72 bp | AACTGCTCCTCTGAGTCTTTGGATTGGAGGGTCCTTTaGCGGAGAGGAAGAGAGTTGCAGGCAGACATAGAT | + |
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Preference number: 6 (lower is better) Translates to: NCSSESLDWRVL*RRGRELQADID Trigger: ATCTATGTCTGCCTGCAACTCTCTTCCTCTCCGGCAAAGGACCCTCCAATCCAAAGACTCAGAGGAGCAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS CAA 72 bp | ATCCCAGAGACCACCAGCCTTAGCGTCTTCTTCCACTaGAATCTTGGCCTTGATCCGTTTTCCAGATTCTCA | + |
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Preference number: 6 (lower is better) Translates to: IPETTSLSVFFH*NLGLDPFSRFS Trigger: TGAGAATCTGGAAAACGGATCAAGGCCAAGATTCAAGTGGAAGAAGACGCTAAGGCTGGTGGTCTCTGGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS CCA 72 bp | CACAGTGAAGACAATCCTTCGACCATCGTTCAGCATTaGAATAGAGATGGGATTATGATCCTCCCGGAAATG | + |
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Preference number: 6 (lower is better) Translates to: HSEDNPSTIVQH*NRDGIMILPEM Trigger: CATTTCCGGGAGGATCATAATCCCATCTCTATTCCAATGCTGAACGATGGTCGAAGGATTGTCTTCACTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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| CDS TCA 72 bp | TTGATGACAACCGAATTGTTCTGCACCTCCATAGTTTaGTACTCATTCTTGTATGAGCTGATGAATAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: LMTTELFCTSIV*YSFLYELMNSC Trigger: GCAACTATTCATCAGCTCATACAAGAATGAGTATCAAACTATGGAGGTGCAGAACAATTCGGTTGTCATCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028024.5 |
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