RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNFSF18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066755

Ensembl transcript IDs: ENSMUST00000086084.2

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTCTAAAAACACCACCTCTAAAGAAGGGTGTTGTTGGCATGTCTTaGCCACCCCACCAGTCTAACAATGTTTCATTAGGAGGCTCTCAG +
Preference number: 1 (lower is better)
Translates to: PLKTPPLKKGVVGMS*PPHQSNNVSLGGSQ
Trigger: CTGAGAGCCTCCTAATGAAACATTGTTAGACTGGTGGGGTGGCCAAGACATGCCAACAACACCCTTCTTTAGAGGTGGTGTTTTTAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR TCA 90 bp GAACACAAATGTTCATTATTACTTTGGAAAGTCAGCATGGTTGAGTaGGATGAACTCTTCCAACAGTATCCTGGATCTTCTTGCTCCAGG +
Preference number: 1 (lower is better)
Translates to: EHKCSLLLWKVSMVE*DELFQQYPGSSCSR
Trigger: CCTGGAGCAAGAAGATCCAGGATACTGTTGGAAGAGTTCATCTCACTCAACCATGCTGACTTTCCAAAGTAATAATGAACATTTGTGTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR GCA 90 bp GCCAGAAAAGTACCACTTTCTGGTGTTAAATCTAGTGAGTACTGGTaGAAACTCTCATTTTTCTATTTGCAGAATTTATGCACACATACA +
Preference number: 1 (lower is better)
Translates to: ARKVPLSGVKSSEYW*KLSFFYLQNLCTHT
Trigger: TGTATGTGTGCATAAATTCTGCAAATAGAAAAATGAGAGTTTGCACCAGTACTCACTAGATTTAACACCAGAAAGTGGTACTTTTCTGGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR CCA 90 bp ACAGCCAGAAAAGTACCACTTTCTGGTGTTAAATCTAGTGAGTACTaGTGCAAACTCTCATTTTTCTATTTGCAGAATTTATGCACACAT +
Preference number: 1 (lower is better)
Translates to: TARKVPLSGVKSSEY*CKLSFFYLQNLCTH
Trigger: ATGTGTGCATAAATTCTGCAAATAGAAAAATGAGAGTTTGCACCAGTACTCACTAGATTTAACACCAGAAAGTGGTACTTTTCTGGCTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR-3UTR CCA 90 bp GCTGGTAAAAGTCTTGTAGCTTCATTCTGGACACCTTGGGGTAAAGTCGATGCACAGAGACCATGTGAATaGTCTAATGAAGACCCCACT +
Preference number: 2 (lower is better)
Translates to: AGKSLVASFWTPWGKVDAQRPCE*SNEDPT
Trigger: AGTGGGGTCTTCATTAGACCATTCACATGGTCTCTG...TGCATCGACTTTACCCCAAGGTGTCCAGAATGAAGCTACAAGACTTTTACCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR-3UTR GCA 90 bp GCTGGTAAAAGTCTTGTAGCTTCATTCTGGACACCTTGGGGTAAAGTCGATGCACATCTTGACCTCTGCTaGTCTAGGCTTCATAATGTT +
Preference number: 2 (lower is better)
Translates to: AGKSLVASFWTPWGKVDAHLDLC*SRLHNV
Trigger: AACATTATGAAGCCTAGAGCAGCAGAGGTCAAGATG...TGCATCGACTTTACCCCAAGGTGTCCAGAATGAAGCTACAAGACTTTTACCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR CAA 90 bp ACAGGATCTCATTCTACCCAGGGATCAAGGTTAGAAAGACATTCTTaGGAAGAGTTTCTGTCTTCTGTGGCCCATACTCCTTTTTATCAT +
Preference number: 2 (lower is better)
Translates to: TGSHSTQGSRLERHS*EEFLSSVAHTPFYH
Trigger: ATGATAAAAAGGAGTATGGGCCACAGAAGACAGAAACTCTTCCAAAGAATGTCTTTCTAACCTTGATCCCTGGGTAGAATGAGATCCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR-3UTR CCA 90 bp TCTTCCAACAGTATCCTGGATCTTCTTGCTCCAGGCAAAAGGAAAATGACTGCTAAATCTAGTGAGTACTaGTGCAAACTCTCATTTTTC +
Preference number: 2 (lower is better)
Translates to: SSNSILDLLAPGKRKMTAKSSEY*CKLSFF
Trigger: GAAAAATGAGAGTTTGCACCAGTACTCACTAGATTT...AGCAGTCATTTTCCTTTTGCCTGGAGCAAGAAGATCCAGGATACTGTTGGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR-3UTR CCA 90 bp TCTTCCAACAGTATCCTGGATCTTCTTGCTCCAGGCAAAAGGAAAATGACTGCTGAAAATGTGCTATCATaGCATAATACAGCCAGAAAA +
Preference number: 2 (lower is better)
Translates to: SSNSILDLLAPGKRKMTAENVLS*HNTARK
Trigger: TTTTCTGGCTGTATTATGCCATGATAGCACATTTTC...AGCAGTCATTTTCCTTTTGCCTGGAGCAAGAAGATCCAGGATACTGTTGGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR GCA 72 bp CTGATTGTGTCAATTTGTAAGCCCTCACAAACTGTGTaGATTGCCATCAATCATCCCCCTCCAACCCACCCA +
Preference number: 3 (lower is better)
Translates to: LIVSICKPSQTV*IAINHPPPTHP
Trigger: TGGGTGGGTTGGAGGGGGATGATTGATGGCAATGCACACAGTTTGTGAGGGCTTACAAATTGACACAATCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR CCA 72 bp ACACCACCTCTAAAGAAGGGTGTTGTTGGCATGTCTTaGCCACCCCACCAGTCTAACAATGTTTCATTAGGA +
Preference number: 3 (lower is better)
Translates to: TPPLKKGVVGMS*PPHQSNNVSLG
Trigger: TCCTAATGAAACATTGTTAGACTGGTGGGGTGGCCAAGACATGCCAACAACACCCTTCTTTAGAGGTGGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR GCA 72 bp CAGATCAATTCCATTTCGTGGCATCTTGACCTCTGCTaGTCTAGGCTTCATAATGTTCTCTGTCCTCTAAAA +
Preference number: 3 (lower is better)
Translates to: QINSISWHLDLC*SRLHNVLCPLK
Trigger: TTTTAGAGGACAGAGAACATTATGAAGCCTAGAGCAGCAGAGGTCAAGATGCCACGAAATGGAATTGATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR CCA 72 bp GCTGGTAAAAGTCTTGTAGCTTCATTCTGGACACCTTaGGGTAAAGTCGATGCATCCATTTCAAAGTTGAGT +
Preference number: 3 (lower is better)
Translates to: AGKSLVASFWTP*GKVDASISKLS
Trigger: ACTCAACTTTGAAATGGATGCATCGACTTTACCCCAAGGTGTCCAGAATGAAGCTACAAGACTTTTACCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR TCA 72 bp GATATGAGGGCTAAAATTTTATATGCCAAGAGGCTCTaGTTGTGTCAATTTGTAAGCCCTCACAAACTGTGT +
Preference number: 3 (lower is better)
Translates to: DMRAKILYAKRL*LCQFVSPHKLC
Trigger: ACACAGTTTGTGAGGGCTTACAAATTGACACAATCAGAGCCTCTTGGCATATAAAATTTTAGCCCTCATATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR TCA 72 bp TGTTCATTATTACTTTGGAAAGTCAGCATGGTTGAGTaGGATGAACTCTTCCAACAGTATCCTGGATCTTCT +
Preference number: 3 (lower is better)
Translates to: CSLLLWKVSMVE*DELFQQYPGSS
Trigger: AGAAGATCCAGGATACTGTTGGAAGAGTTCATCTCACTCAACCATGCTGACTTTCCAAAGTAATAATGAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR GCA 72 bp TTATACTTGTCAGTTAGGGAACACCAACAGAAAATGTaGTATCATGGCATAATACAGCCAGAAAAGTACCAC +
Preference number: 3 (lower is better)
Translates to: LYLSVREHQQKM*YHGIIQPEKYH
Trigger: GTGGTACTTTTCTGGCTGTATTATGCCATGATAGCACATTTTCTGTTGGTGTTCCCTAACTGACAAGTATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR GCA 72 bp GTACCACTTTCTGGTGTTAAATCTAGTGAGTACTGGTaGAAACTCTCATTTTTCTATTTGCAGAATTTATGC +
Preference number: 3 (lower is better)
Translates to: VPLSGVKSSEYW*KLSFFYLQNLC
Trigger: GCATAAATTCTGCAAATAGAAAAATGAGAGTTTGCACCAGTACTCACTAGATTTAACACCAGAAAGTGGTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS-3UTR TCA 90 bp CCCCCTCCAACCCACCCACCAGCATCTCGGGATACAAAGAAGAAGATGAGGAGATATGCACAAGAGCCATaGCTTCTTGCACCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: PPPTHPPASRDTKKKMRRYAQEP*LLAPLC
Trigger: GCAGAGAGGTGCAAGAAGTCATGGCTCTTGTGCATA...TCTCCTCATCTTCTTCTTTGTATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS-3UTR GCA 90 bp TCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATACAAAGAAGAAGAAGAGCCATGACTTCTTaGACCTCTCTGCCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: SIIPLQPTHQHLGIQRRRRAMTS*TSLPFE
Trigger: CTCAAAGGGCAGAGAGGTGCAAGAAGTCATGGCTCT...TCTTCTTCTTTGTATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS-3UTR GCA 90 bp GTGTGCATTGCCATCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATTTGGGAGATGTCATGTaGCATTTTGAGGATGATAGT +
Preference number: 4 (lower is better)
Translates to: VCIAINHPPPTHPPASRDLGDVM*HFEDDS
Trigger: ACTATCATCCTCAAAATGGCACATGACATCTCCCAA...ATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGATGGCAATGCACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR CAA 72 bp TTGTGTCAATTTGTAAGCCCTCACAAACTGTGTGCATaGCCATCAATCATCCCCCTCCAACCCACCCACCAG +
Preference number: 4 (lower is better)
Translates to: LCQFVSPHKLCA*PSIIPLQPTHQ
Trigger: CTGGTGGGTGGGTTGGAGGGGGATGATTGATGGCAATGCACACAGTTTGTGAGGGCTTACAAATTGACACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS-3UTR TCA 90 bp TCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATACAAAGAAGAAGATGCCCTTTGAGGACTTaGTTCTCTCAAAGGCATTTC +
Preference number: 4 (lower is better)
Translates to: SIIPLQPTHQHLGIQRRRCPLRT*FSQRHF
Trigger: GAAATGCCTTTGAGAGAATCAAGTCCTCAAAGGGCA...TCTTCTTCTTTGTATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS-3UTR TCA 90 bp TCATTCTACCCAGGGATCAAGGTTAGAAAGACATTCTTTGGAAGAGTTTCTGTCCGATGGCAGTTGGCTTaGGTGAAGTATAGATCAGTG +
Preference number: 4 (lower is better)
Translates to: SFYPGIKVRKTFFGRVSVRWQLA*VKYRSV
Trigger: CACTGATCTATACTTCACTCAAGCCAACTGCCATCG...GACAGAAACTCTTCCAAAGAATGTCTTTCTAACCTTGATCCCTGGGTAGAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS-3UTR GCA 90 bp TGTTCTCTGTCCTCTAAAAACACCACCTCTAAAGAAGGGTGTTGTTGGCATGTCCGTAGATTAAATATGTaGCACTCTGCAGTATCTTCA +
Preference number: 4 (lower is better)
Translates to: CSLSSKNTTSKEGCCWHVRRLNM*HSAVSS
Trigger: TGAAGATACTGCAGAGTGGCACATATTTAATCTACG...GACATGCCAACAACACCCTTCTTTAGAGGTGGTGTTTTTAGAGGACAGAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
3UTR CAA 72 bp ATAGCATTGTTGTGTGGTTTAGGAAAACTGTTATACTaGTCAGTTAGGGAACACCAACAGAAAATGTGCTAT +
Preference number: 4 (lower is better)
Translates to: IALLCGLGKLLY*SVREHQQKMCY
Trigger: ATAGCACATTTTCTGTTGGTGTTCCCTAACTGACAAGTATAACAGTTTTCCTAAACCACACAACAATGCTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS-3UTR CAA 90 bp GTGTGCATTGCCATCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATACTACGAAGGGGGCATaGTCTTTTATGTATTTCTTA +
Preference number: 5 (lower is better)
Translates to: VCIAINHPPPTHPPASRDTTKGA*SFMYFL
Trigger: TAAGAAATACATAAAAGACAATGCCCCCTTCGTAGT...ATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGATGGCAATGCACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS GCA 90 bp GCAACATCAGTAACAGAGCCACTATGCACAAGAGCCATGACTTCTTaGACCTCTCTGCCCTTTGAGGACTTGATTCTCTCAAAGGCATTT +
Preference number: 5 (lower is better)
Translates to: ATSVTEPLCTRAMTS*TSLPFEDLILSKAF
Trigger: AAATGCCTTTGAGAGAATCAAGTCCTCAAAGGGCAGAGAGGTGCAAGAAGTCATGGCTCTTGTGCATAGTGGCTCTGTTACTGATGTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS-3UTR CAA 90 bp TCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATACAAAGAAGAAGAATGTCATGTGCCATTTaGAGGATGATAGTTCAAACT +
Preference number: 5 (lower is better)
Translates to: SIIPLQPTHQHLGIQRRRMSCAI*RMIVQT
Trigger: AGTTTGAACTATCATCCTCAAAATGGCACATGACAT...TCTTCTTCTTTGTATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS GCA 90 bp TGTATTTCTTATCCACAGGAATCACTTGGCCGTAGATTAAATATGTaGCACTCTGCAGTATCTTCAGCTTCCCATCAGATGTCGTATTCA +
Preference number: 5 (lower is better)
Translates to: CISYPQESLGRRLNM*HSAVSSASHQMSYS
Trigger: TGAATACGACATCTGATGGGAAGCTGAAGATACTGCAGAGTGGCACATATTTAATCTACGGCCAAGTGATTCCTGTGGATAAGAAATACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS GCA 72 bp GTAACAGAGCCACTATGCACAAGAGCCATGACTTCTTaGACCTCTCTGCCCTTTGAGGACTTGATTCTCTCA +
Preference number: 6 (lower is better)
Translates to: VTEPLCTRAMTS*TSLPFEDLILS
Trigger: TGAGAGAATCAAGTCCTCAAAGGGCAGAGAGGTGCAAGAAGTCATGGCTCTTGTGCATAGTGGCTCTGTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS TCA 72 bp CTTAACCATGCAGGACTCGATGGCAGTTGGCTTGAGTaGAGTATAGATCAGTGTACCCAAAGAACAGAGCAA +
Preference number: 6 (lower is better)
Translates to: LNHAGLDGSWLE*SIDQCTQRTEQ
Trigger: TTGCTCTGTTCTTTGGGTACACTGATCTATACTTCACTCAAGCCAACTGCCATCGAGTCCTGCATGGTTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2
CDS GCA 72 bp TATCCACAGGAATCACTTGGCCGTAGATTAAATATGTaGCACTCTGCAGTATCTTCAGCTTCCCATCAGATG +
Preference number: 6 (lower is better)
Translates to: YPQESLGRRLNM*HSAVSSASHQM
Trigger: CATCTGATGGGAAGCTGAAGATACTGCAGAGTGGCACATATTTAATCTACGGCCAAGTGATTCCTGTGGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086084.2