Pregenerated sensors for TNFSF18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066755Ensembl transcript IDs: ENSMUST00000086084.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CCTCTAAAAACACCACCTCTAAAGAAGGGTGTTGTTGGCATGTCTTaGCCACCCCACCAGTCTAACAATGTTTCATTAGGAGGCTCTCAG | + |
Preference number: 1 (lower is better) Translates to: PLKTPPLKKGVVGMS*PPHQSNNVSLGGSQ Trigger: CTGAGAGCCTCCTAATGAAACATTGTTAGACTGGTGGGGTGGCCAAGACATGCCAACAACACCCTTCTTTAGAGGTGGTGTTTTTAGAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR TCA 90 bp | GAACACAAATGTTCATTATTACTTTGGAAAGTCAGCATGGTTGAGTaGGATGAACTCTTCCAACAGTATCCTGGATCTTCTTGCTCCAGG | + |
Preference number: 1 (lower is better) Translates to: EHKCSLLLWKVSMVE*DELFQQYPGSSCSR Trigger: CCTGGAGCAAGAAGATCCAGGATACTGTTGGAAGAGTTCATCTCACTCAACCATGCTGACTTTCCAAAGTAATAATGAACATTTGTGTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR GCA 90 bp | GCCAGAAAAGTACCACTTTCTGGTGTTAAATCTAGTGAGTACTGGTaGAAACTCTCATTTTTCTATTTGCAGAATTTATGCACACATACA | + |
Preference number: 1 (lower is better) Translates to: ARKVPLSGVKSSEYW*KLSFFYLQNLCTHT Trigger: TGTATGTGTGCATAAATTCTGCAAATAGAAAAATGAGAGTTTGCACCAGTACTCACTAGATTTAACACCAGAAAGTGGTACTTTTCTGGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR CCA 90 bp | ACAGCCAGAAAAGTACCACTTTCTGGTGTTAAATCTAGTGAGTACTaGTGCAAACTCTCATTTTTCTATTTGCAGAATTTATGCACACAT | + |
Preference number: 1 (lower is better) Translates to: TARKVPLSGVKSSEY*CKLSFFYLQNLCTH Trigger: ATGTGTGCATAAATTCTGCAAATAGAAAAATGAGAGTTTGCACCAGTACTCACTAGATTTAACACCAGAAAGTGGTACTTTTCTGGCTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR-3UTR CCA 90 bp | GCTGGTAAAAGTCTTGTAGCTTCATTCTGGACACCTTGGGGTAAAGTCGATGCACAGAGACCATGTGAATaGTCTAATGAAGACCCCACT | + |
Preference number: 2 (lower is better) Translates to: AGKSLVASFWTPWGKVDAQRPCE*SNEDPT Trigger: AGTGGGGTCTTCATTAGACCATTCACATGGTCTCTG...TGCATCGACTTTACCCCAAGGTGTCCAGAATGAAGCTACAAGACTTTTACCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR-3UTR GCA 90 bp | GCTGGTAAAAGTCTTGTAGCTTCATTCTGGACACCTTGGGGTAAAGTCGATGCACATCTTGACCTCTGCTaGTCTAGGCTTCATAATGTT | + |
Preference number: 2 (lower is better) Translates to: AGKSLVASFWTPWGKVDAHLDLC*SRLHNV Trigger: AACATTATGAAGCCTAGAGCAGCAGAGGTCAAGATG...TGCATCGACTTTACCCCAAGGTGTCCAGAATGAAGCTACAAGACTTTTACCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR CAA 90 bp | ACAGGATCTCATTCTACCCAGGGATCAAGGTTAGAAAGACATTCTTaGGAAGAGTTTCTGTCTTCTGTGGCCCATACTCCTTTTTATCAT | + |
Preference number: 2 (lower is better) Translates to: TGSHSTQGSRLERHS*EEFLSSVAHTPFYH Trigger: ATGATAAAAAGGAGTATGGGCCACAGAAGACAGAAACTCTTCCAAAGAATGTCTTTCTAACCTTGATCCCTGGGTAGAATGAGATCCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR-3UTR CCA 90 bp | TCTTCCAACAGTATCCTGGATCTTCTTGCTCCAGGCAAAAGGAAAATGACTGCTAAATCTAGTGAGTACTaGTGCAAACTCTCATTTTTC | + |
Preference number: 2 (lower is better) Translates to: SSNSILDLLAPGKRKMTAKSSEY*CKLSFF Trigger: GAAAAATGAGAGTTTGCACCAGTACTCACTAGATTT...AGCAGTCATTTTCCTTTTGCCTGGAGCAAGAAGATCCAGGATACTGTTGGAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR-3UTR CCA 90 bp | TCTTCCAACAGTATCCTGGATCTTCTTGCTCCAGGCAAAAGGAAAATGACTGCTGAAAATGTGCTATCATaGCATAATACAGCCAGAAAA | + |
Preference number: 2 (lower is better) Translates to: SSNSILDLLAPGKRKMTAENVLS*HNTARK Trigger: TTTTCTGGCTGTATTATGCCATGATAGCACATTTTC...AGCAGTCATTTTCCTTTTGCCTGGAGCAAGAAGATCCAGGATACTGTTGGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR GCA 72 bp | CTGATTGTGTCAATTTGTAAGCCCTCACAAACTGTGTaGATTGCCATCAATCATCCCCCTCCAACCCACCCA | + |
Preference number: 3 (lower is better) Translates to: LIVSICKPSQTV*IAINHPPPTHP Trigger: TGGGTGGGTTGGAGGGGGATGATTGATGGCAATGCACACAGTTTGTGAGGGCTTACAAATTGACACAATCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR CCA 72 bp | ACACCACCTCTAAAGAAGGGTGTTGTTGGCATGTCTTaGCCACCCCACCAGTCTAACAATGTTTCATTAGGA | + |
Preference number: 3 (lower is better) Translates to: TPPLKKGVVGMS*PPHQSNNVSLG Trigger: TCCTAATGAAACATTGTTAGACTGGTGGGGTGGCCAAGACATGCCAACAACACCCTTCTTTAGAGGTGGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR GCA 72 bp | CAGATCAATTCCATTTCGTGGCATCTTGACCTCTGCTaGTCTAGGCTTCATAATGTTCTCTGTCCTCTAAAA | + |
Preference number: 3 (lower is better) Translates to: QINSISWHLDLC*SRLHNVLCPLK Trigger: TTTTAGAGGACAGAGAACATTATGAAGCCTAGAGCAGCAGAGGTCAAGATGCCACGAAATGGAATTGATCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR CCA 72 bp | GCTGGTAAAAGTCTTGTAGCTTCATTCTGGACACCTTaGGGTAAAGTCGATGCATCCATTTCAAAGTTGAGT | + |
Preference number: 3 (lower is better) Translates to: AGKSLVASFWTP*GKVDASISKLS Trigger: ACTCAACTTTGAAATGGATGCATCGACTTTACCCCAAGGTGTCCAGAATGAAGCTACAAGACTTTTACCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR TCA 72 bp | GATATGAGGGCTAAAATTTTATATGCCAAGAGGCTCTaGTTGTGTCAATTTGTAAGCCCTCACAAACTGTGT | + |
Preference number: 3 (lower is better) Translates to: DMRAKILYAKRL*LCQFVSPHKLC Trigger: ACACAGTTTGTGAGGGCTTACAAATTGACACAATCAGAGCCTCTTGGCATATAAAATTTTAGCCCTCATATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR TCA 72 bp | TGTTCATTATTACTTTGGAAAGTCAGCATGGTTGAGTaGGATGAACTCTTCCAACAGTATCCTGGATCTTCT | + |
Preference number: 3 (lower is better) Translates to: CSLLLWKVSMVE*DELFQQYPGSS Trigger: AGAAGATCCAGGATACTGTTGGAAGAGTTCATCTCACTCAACCATGCTGACTTTCCAAAGTAATAATGAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR GCA 72 bp | TTATACTTGTCAGTTAGGGAACACCAACAGAAAATGTaGTATCATGGCATAATACAGCCAGAAAAGTACCAC | + |
Preference number: 3 (lower is better) Translates to: LYLSVREHQQKM*YHGIIQPEKYH Trigger: GTGGTACTTTTCTGGCTGTATTATGCCATGATAGCACATTTTCTGTTGGTGTTCCCTAACTGACAAGTATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR GCA 72 bp | GTACCACTTTCTGGTGTTAAATCTAGTGAGTACTGGTaGAAACTCTCATTTTTCTATTTGCAGAATTTATGC | + |
Preference number: 3 (lower is better) Translates to: VPLSGVKSSEYW*KLSFFYLQNLC Trigger: GCATAAATTCTGCAAATAGAAAAATGAGAGTTTGCACCAGTACTCACTAGATTTAACACCAGAAAGTGGTAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS-3UTR TCA 90 bp | CCCCCTCCAACCCACCCACCAGCATCTCGGGATACAAAGAAGAAGATGAGGAGATATGCACAAGAGCCATaGCTTCTTGCACCTCTCTGC | + |
Preference number: 4 (lower is better) Translates to: PPPTHPPASRDTKKKMRRYAQEP*LLAPLC Trigger: GCAGAGAGGTGCAAGAAGTCATGGCTCTTGTGCATA...TCTCCTCATCTTCTTCTTTGTATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS-3UTR GCA 90 bp | TCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATACAAAGAAGAAGAAGAGCCATGACTTCTTaGACCTCTCTGCCCTTTGAG | + |
Preference number: 4 (lower is better) Translates to: SIIPLQPTHQHLGIQRRRRAMTS*TSLPFE Trigger: CTCAAAGGGCAGAGAGGTGCAAGAAGTCATGGCTCT...TCTTCTTCTTTGTATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS-3UTR GCA 90 bp | GTGTGCATTGCCATCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATTTGGGAGATGTCATGTaGCATTTTGAGGATGATAGT | + |
Preference number: 4 (lower is better) Translates to: VCIAINHPPPTHPPASRDLGDVM*HFEDDS Trigger: ACTATCATCCTCAAAATGGCACATGACATCTCCCAA...ATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGATGGCAATGCACAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR CAA 72 bp | TTGTGTCAATTTGTAAGCCCTCACAAACTGTGTGCATaGCCATCAATCATCCCCCTCCAACCCACCCACCAG | + |
Preference number: 4 (lower is better) Translates to: LCQFVSPHKLCA*PSIIPLQPTHQ Trigger: CTGGTGGGTGGGTTGGAGGGGGATGATTGATGGCAATGCACACAGTTTGTGAGGGCTTACAAATTGACACAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS-3UTR TCA 90 bp | TCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATACAAAGAAGAAGATGCCCTTTGAGGACTTaGTTCTCTCAAAGGCATTTC | + |
Preference number: 4 (lower is better) Translates to: SIIPLQPTHQHLGIQRRRCPLRT*FSQRHF Trigger: GAAATGCCTTTGAGAGAATCAAGTCCTCAAAGGGCA...TCTTCTTCTTTGTATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS-3UTR TCA 90 bp | TCATTCTACCCAGGGATCAAGGTTAGAAAGACATTCTTTGGAAGAGTTTCTGTCCGATGGCAGTTGGCTTaGGTGAAGTATAGATCAGTG | + |
Preference number: 4 (lower is better) Translates to: SFYPGIKVRKTFFGRVSVRWQLA*VKYRSV Trigger: CACTGATCTATACTTCACTCAAGCCAACTGCCATCG...GACAGAAACTCTTCCAAAGAATGTCTTTCTAACCTTGATCCCTGGGTAGAATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS-3UTR GCA 90 bp | TGTTCTCTGTCCTCTAAAAACACCACCTCTAAAGAAGGGTGTTGTTGGCATGTCCGTAGATTAAATATGTaGCACTCTGCAGTATCTTCA | + |
Preference number: 4 (lower is better) Translates to: CSLSSKNTTSKEGCCWHVRRLNM*HSAVSS Trigger: TGAAGATACTGCAGAGTGGCACATATTTAATCTACG...GACATGCCAACAACACCCTTCTTTAGAGGTGGTGTTTTTAGAGGACAGAGAACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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3UTR CAA 72 bp | ATAGCATTGTTGTGTGGTTTAGGAAAACTGTTATACTaGTCAGTTAGGGAACACCAACAGAAAATGTGCTAT | + |
Preference number: 4 (lower is better) Translates to: IALLCGLGKLLY*SVREHQQKMCY Trigger: ATAGCACATTTTCTGTTGGTGTTCCCTAACTGACAAGTATAACAGTTTTCCTAAACCACACAACAATGCTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS-3UTR CAA 90 bp | GTGTGCATTGCCATCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATACTACGAAGGGGGCATaGTCTTTTATGTATTTCTTA | + |
Preference number: 5 (lower is better) Translates to: VCIAINHPPPTHPPASRDTTKGA*SFMYFL Trigger: TAAGAAATACATAAAAGACAATGCCCCCTTCGTAGT...ATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGATGGCAATGCACAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS GCA 90 bp | GCAACATCAGTAACAGAGCCACTATGCACAAGAGCCATGACTTCTTaGACCTCTCTGCCCTTTGAGGACTTGATTCTCTCAAAGGCATTT | + |
Preference number: 5 (lower is better) Translates to: ATSVTEPLCTRAMTS*TSLPFEDLILSKAF Trigger: AAATGCCTTTGAGAGAATCAAGTCCTCAAAGGGCAGAGAGGTGCAAGAAGTCATGGCTCTTGTGCATAGTGGCTCTGTTACTGATGTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS-3UTR CAA 90 bp | TCAATCATCCCCCTCCAACCCACCCACCAGCATCTCGGGATACAAAGAAGAAGAATGTCATGTGCCATTTaGAGGATGATAGTTCAAACT | + |
Preference number: 5 (lower is better) Translates to: SIIPLQPTHQHLGIQRRRMSCAI*RMIVQT Trigger: AGTTTGAACTATCATCCTCAAAATGGCACATGACAT...TCTTCTTCTTTGTATCCCGAGATGCTGGTGGGTGGGTTGGAGGGGGATGATTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS GCA 90 bp | TGTATTTCTTATCCACAGGAATCACTTGGCCGTAGATTAAATATGTaGCACTCTGCAGTATCTTCAGCTTCCCATCAGATGTCGTATTCA | + |
Preference number: 5 (lower is better) Translates to: CISYPQESLGRRLNM*HSAVSSASHQMSYS Trigger: TGAATACGACATCTGATGGGAAGCTGAAGATACTGCAGAGTGGCACATATTTAATCTACGGCCAAGTGATTCCTGTGGATAAGAAATACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS GCA 72 bp | GTAACAGAGCCACTATGCACAAGAGCCATGACTTCTTaGACCTCTCTGCCCTTTGAGGACTTGATTCTCTCA | + |
Preference number: 6 (lower is better) Translates to: VTEPLCTRAMTS*TSLPFEDLILS Trigger: TGAGAGAATCAAGTCCTCAAAGGGCAGAGAGGTGCAAGAAGTCATGGCTCTTGTGCATAGTGGCTCTGTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS TCA 72 bp | CTTAACCATGCAGGACTCGATGGCAGTTGGCTTGAGTaGAGTATAGATCAGTGTACCCAAAGAACAGAGCAA | + |
Preference number: 6 (lower is better) Translates to: LNHAGLDGSWLE*SIDQCTQRTEQ Trigger: TTGCTCTGTTCTTTGGGTACACTGATCTATACTTCACTCAAGCCAACTGCCATCGAGTCCTGCATGGTTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |
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CDS GCA 72 bp | TATCCACAGGAATCACTTGGCCGTAGATTAAATATGTaGCACTCTGCAGTATCTTCAGCTTCCCATCAGATG | + |
Preference number: 6 (lower is better) Translates to: YPQESLGRRLNM*HSAVSSASHQM Trigger: CATCTGATGGGAAGCTGAAGATACTGCAGAGTGGCACATATTTAATCTACGGCCAAGTGATTCCTGTGGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086084.2 |