RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNFSF14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005824

Ensembl transcript IDs: ENSMUST00000005976.8

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCTCGCTCCTGGGCTCCACGCCCCAAGTCTCCAGGTCTCTGATTTaGAGATTGCCCAAAGCAGGTCAGCAGTCTACACCGCCCCGAGCA +
Preference number: 1 (lower is better)
Translates to: PSLLGSTPQVSRSLI*RLPKAGQQSTPPRA
Trigger: TGCTCGGGGCGGTGTAGACTGCTGACCTGCTTTGGGCAATCTTCAAATCAGAGACCTGGAGACTTGGGGCGTGGAGCCCAGGAGCGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CCA 90 bp GTACCTGGCCAGTTGCAGCCAGGGGGCCAGTGCTGTTTTGGTGGCTaGAAACCAATGCAGCGGATGGATGGGAGAGGCCAGAGTGTGGTG +
Preference number: 1 (lower is better)
Translates to: VPGQLQPGGQCCFGG*KPMQRMDGRGQSVV
Trigger: CACCACACTCTGGCCTCTCCCATCCATCCGCTGCATTGGTTTCCAGCCACCAAAACAGCACTGGCCCCCTGGCTGCAACTGGCCAGGTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CCA 90 bp GGGCCAGTGCTGTTTTGGTGGCTGGAAACCAATGCAGCGGATGGATaGGAGAGGCCAGAGTGTGGTGGCAAGTCTGGAGCCCCAAGTCCT +
Preference number: 1 (lower is better)
Translates to: GPVLFWWLETNAADG*ERPECGGKSGAPSP
Trigger: AGGACTTGGGGCTCCAGACTTGCCACCACACTCTGGCCTCTCCCATCCATCCGCTGCATTGGTTTCCAGCCACCAAAACAGCACTGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR GCA 90 bp ATGGGAGAGGCCAGAGTGTGGTGGCAAGTCTGGAGCCCCAAGTCCTaGCAACATGGTCCTGATGACACTCTGGGAAGGTTTCTTGCCTCC +
Preference number: 1 (lower is better)
Translates to: MGEARVWWQVWSPKS*QHGPDDTLGRFLAS
Trigger: GGAGGCAAGAAACCTTCCCAGAGTGTCATCAGGACCATGTTGGCAGGACTTGGGGCTCCAGACTTGCCACCACACTCTGGCCTCTCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CCA 90 bp CATCAAGATGTCCCTGAGGAATGTAGGTGCTCAGAAGCTCGTACCTaGCCAGTTGCAGCCAGGGGGCCAGTGCTGTTTTGGTGGCTGGAA +
Preference number: 1 (lower is better)
Translates to: HQDVPEECRCSEART*PVAARGPVLFWWLE
Trigger: TTCCAGCCACCAAAACAGCACTGGCCCCCTGGCTGCAACTGGCCAGGTACGAGCTTCTGAGCACCTACATTCCTCAGGGACATCTTGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR TCA 90 bp TCTCTTCTGCATTCCCTTCTTTCCTCCCTTTCCTCCCTTCCCTTCTaGCCAACCATTCCTGGCATGTCTGTCGCTGCTGCGCATTGGACT +
Preference number: 1 (lower is better)
Translates to: SLLHSLLSSLSSLPF*PTIPGMSVAAAHWT
Trigger: AGTCCAATGCGCAGCAGCGACAGACATGCCAGGAATGGTTGGTCAGAAGGGAAGGGAGGAAAGGGAGGAAAGAAGGGAATGCAGAAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR TCA 90 bp GGCTCCTTAAAGGGAGGACTTCAAACCCTATTGCTGGGTTTGAGGTaGGTCCTGGAGAGGTCCCTCCACAAAATACATTGTCACCGCAGC +
Preference number: 1 (lower is better)
Translates to: GSLKGGLQTLLLGLR*VLERSLHKIHCHRS
Trigger: GCTGCGGTGACAATGTATTTTGTGGAGGGACCTCTCCAGGACTCACCTCAAACCCAGCAATAGGGTTTGAAGTCCTCCCTTTAAGGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CCA 90 bp AAGTCTGGAGCCCCAAGTCCTGCCAACATGGTCCTGATGACACTCTaGGAAGGTTTCTTGCCTCCAGCTCAAAACCCAGAAAGCCGAAAT +
Preference number: 1 (lower is better)
Translates to: KSGAPSPANMVLMTL*EGFLPPAQNPESRN
Trigger: ATTTCGGCTTTCTGGGTTTTGAGCTGGAGGCAAGAAACCTTCCCAGAGTGTCATCAGGACCATGTTGGCAGGACTTGGGGCTCCAGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR TCA 90 bp ACCATTCCTGGCATGTCTGTCGCTGCTGCGCATTGGACTGAGTACTaGGATCTCATCAAGATGTCCCTGAGGAATGTAGGTGCTCAGAAG +
Preference number: 1 (lower is better)
Translates to: TIPGMSVAAAHWTEY*DLIKMSLRNVGAQK
Trigger: CTTCTGAGCACCTACATTCCTCAGGGACATCTTGATGAGATCTCAGTACTCAGTCCAATGCGCAGCAGCGACAGACATGCCAGGAATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR TCA 90 bp AGCCGAAATCTCAGTGTTTGCATCAGAAGCATAAATACCCCAGCTTaGTTCTTTCTTCCTGAATATCAGGCAAATGAGCTGACCCCTCGC +
Preference number: 1 (lower is better)
Translates to: SRNLSVCIRSINTPA*FFLPEYQANELTPR
Trigger: GCGAGGGGTCAGCTCATTTGCCTGATATTCAGGAAGAAAGAATCAAGCTGGGGTATTTATGCTTCTGATGCAAACACTGAGATTTCGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CCA 90 bp GATCTCATTGTCACAAGTGCCCATCACCGCATCTGTGTCTTTATATaGGTACCAGGGATTCAAACTCAGATCCCCATAATTGCACTTTAC +
Preference number: 1 (lower is better)
Translates to: DLIVTSAHHRICVFI*VPGIQTQIPIIALY
Trigger: GTAAAGTGCAATTATGGGGATCTGAGTTTGAATCCCTGGTACCCATATAAAGACACAGATGCGGTGATGGGCACTTGTGACAATGAGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR GCA 90 bp CCAGTGAACCCCAGAGGTCCCTCCTGTCTCCATTCCCTATTGATGATCTCATTGTCGTACCTGGCCAGTTaGAGCCAGGGGGCCAGTGCT +
Preference number: 2 (lower is better)
Translates to: PVNPRGPSCLHSLLMISLSYLAS*SQGASA
Trigger: AGCACTGGCCCCCTGGCTGCAACTGGCCAGGTACGA...CAATGAGATCATCAATAGGGAATGGAGACAGGAGGGACCTCTGGGGTTCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CAA 90 bp GCCTGGCCAGTGAACCCCAGAGGTCCCTCCTGTCTCCATTCCCTATaGATGATCTCATTGTCACAAGTGCCCATCACCGCATCTGTGTCT +
Preference number: 2 (lower is better)
Translates to: AWPVNPRGPSCLHSL*MISLSQVPITASVS
Trigger: AGACACAGATGCGGTGATGGGCACTTGTGACAATGAGATCATCAATAGGGAATGGAGACAGGAGGGACCTCTGGGGTTCACTGGCCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR TCA 90 bp CCAGTGAACCCCAGAGGTCCCTCCTGTCTCCATTCCCTATTGATGATCTCATTGTTGCTGGGTTTGAGGTaGGTCCTGGAGAGGTCCCTC +
Preference number: 2 (lower is better)
Translates to: PVNPRGPSCLHSLLMISLLLGLR*VLERSL
Trigger: GAGGGACCTCTCCAGGACTCACCTCAAACCCAGCAA...CAATGAGATCATCAATAGGGAATGGAGACAGGAGGGACCTCTGGGGTTCACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR CCA 90 bp ATCCCCATAATTGCACTTTACCCACTGAGCCATAACCCAAGCCCACTTGCTCCCGGGCCAGTGCTGTTTTaGTGGCTGGAAACCAATGCA +
Preference number: 2 (lower is better)
Translates to: IPIIALYPLSHNPSPLAPGPVLF*WLETNA
Trigger: TGCATTGGTTTCCAGCCACCAAAACAGCACTGGCCC...GGGAGCAAGTGGGCTTGGGTTATGGCTCAGTGGGTAAAGTGCAATTATGGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CAA 90 bp AACCCCAGAGGTCCCTCCTGTCTCCATTCCCTATTGATGATCTCATaGTCACAAGTGCCCATCACCGCATCTGTGTCTTTATATGGGTAC +
Preference number: 2 (lower is better)
Translates to: NPRGPSCLHSLLMIS*SQVPITASVSLYGY
Trigger: GTACCCATATAAAGACACAGATGCGGTGATGGGCACTTGTGACAATGAGATCATCAATAGGGAATGGAGACAGGAGGGACCTCTGGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR TCA 90 bp ATCCCCATAATTGCACTTTACCCACTGAGCCATAACCCAAGCCCACTTGCTCCCAAGTCTCCAGGTCTCTaGTTTGAAGATTGCCCAAAG +
Preference number: 2 (lower is better)
Translates to: IPIIALYPLSHNPSPLAPKSPGL*FEDCPK
Trigger: CTTTGGGCAATCTTCAAATCAGAGACCTGGAGACTT...GGGAGCAAGTGGGCTTGGGTTATGGCTCAGTGGGTAAAGTGCAATTATGGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR GCA 90 bp CCTCCCTTCCCTTCTGACCAACCATTCCTGGCATGTCTGTCGCTGCTGCGCATTCGAAATCTCAGTGTTTaGATCAGAAGCATAAATACC +
Preference number: 2 (lower is better)
Translates to: PPFPSDQPFLACLSLLRIRNLSV*IRSINT
Trigger: GGTATTTATGCTTCTGATGCAAACACTGAGATTTCG...AATGCGCAGCAGCGACAGACATGCCAGGAATGGTTGGTCAGAAGGGAAGGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR GCA 72 bp CAGGGGGCCAGTGCTGTTTTGGTGGCTGGAAACCAATaGAGCGGATGGATGGGAGAGGCCAGAGTGTGGTGG +
Preference number: 3 (lower is better)
Translates to: QGASAVLVAGNQ*SGWMGEARVWW
Trigger: CCACCACACTCTGGCCTCTCCCATCCATCCGCTGCATTGGTTTCCAGCCACCAAAACAGCACTGGCCCCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CCA 72 bp TGGCCAGTTGCAGCCAGGGGGCCAGTGCTGTTTTGGTaGCTGGAAACCAATGCAGCGGATGGATGGGAGAGG +
Preference number: 3 (lower is better)
Translates to: WPVAARGPVLFW*LETNAADGWER
Trigger: CCTCTCCCATCCATCCGCTGCATTGGTTTCCAGCCACCAAAACAGCACTGGCCCCCTGGCTGCAACTGGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR CAA 90 bp GTATCCCCAAGGGTGTCACCTCCTCCCTGCCGCTTTGTTGTTGCTGTTTTGTTTCTCGTACCTGGCCAGTaGCAGCCAGGGGGCCAGTGC +
Preference number: 3 (lower is better)
Translates to: VSPRVSPPPCRFVVAVLFLVPGQ*QPGGQC
Trigger: GCACTGGCCCCCTGGCTGCAACTGGCCAGGTACGAG...AAACAAAACAGCAACAACAAAGCGGCAGGGAGGAGGTGACACCCTTGGGGATAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR CAA 90 bp ATCCCCATAATTGCACTTTACCCACTGAGCCATAACCCAAGCCCACTTGCTCCCGGGGCCAGTGCTGTTTaGGTGGCTGGAAACCAATGC +
Preference number: 3 (lower is better)
Translates to: IPIIALYPLSHNPSPLAPGASAV*VAGNQC
Trigger: GCATTGGTTTCCAGCCACCAAAACAGCACTGGCCCC...GGGAGCAAGTGGGCTTGGGTTATGGCTCAGTGGGTAAAGTGCAATTATGGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR TCA 72 bp TTGGAGCTCTTTGATTCAGCTAGACTGCCTGGCCAGTaGACCCCAGAGGTCCCTCCTGTCTCCATTCCCTAT +
Preference number: 3 (lower is better)
Translates to: LELFDSARLPGQ*TPEVPPVSIPY
Trigger: ATAGGGAATGGAGACAGGAGGGACCTCTGGGGTTCACTGGCCAGGCAGTCTAGCTGAATCAAAGAGCTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR CAA 90 bp CACAAGTGCCCATCACCGCATCTGTGTCTTTATATGGGTACCAGGGATTCAAACCTCTGGGAAGGTTTCTaGCCTCCAGCTCAAAACCCA +
Preference number: 3 (lower is better)
Translates to: HKCPSPHLCLYMGTRDSNLWEGF*PPAQNP
Trigger: TGGGTTTTGAGCTGGAGGCAAGAAACCTTCCCAGAG...GTTTGAATCCCTGGTACCCATATAAAGACACAGATGCGGTGATGGGCACTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR TCA 72 bp AAGGGAGGACTTCAAACCCTATTGCTGGGTTTGAGGTaGGTCCTGGAGAGGTCCCTCCACAAAATACATTGT +
Preference number: 3 (lower is better)
Translates to: KGGLQTLLLGLR*VLERSLHKIHC
Trigger: ACAATGTATTTTGTGGAGGGACCTCTCCAGGACTCACCTCAAACCCAGCAATAGGGTTTGAAGTCCTCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR-3UTR CAA 90 bp ATGATCTCATTGTCACAAGTGCCCATCACCGCATCTGTGTCTTTATATGGGTACCTCCTCCCTGCCGCTTaGTTGTTGCTGTTTTGTTTT +
Preference number: 3 (lower is better)
Translates to: MISLSQVPITASVSLYGYLLPAA*LLLFCF
Trigger: AAAACAAAACAGCAACAACAAAGCGGCAGGGAGGAG...GTACCCATATAAAGACACAGATGCGGTGATGGGCACTTGTGACAATGAGATCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CCA 72 bp GTCACAAGTGCCCATCACCGCATCTGTGTCTTTATATaGGTACCAGGGATTCAAACTCAGATCCCCATAATT +
Preference number: 3 (lower is better)
Translates to: VTSAHHRICVFI*VPGIQTQIPII
Trigger: AATTATGGGGATCTGAGTTTGAATCCCTGGTACCCATATAAAGACACAGATGCGGTGATGGGCACTTGTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR TCA 72 bp CTCAGTGTTTGCATCAGAAGCATAAATACCCCAGCTTaGTTCTTTCTTCCTGAATATCAGGCAAATGAGCTG +
Preference number: 3 (lower is better)
Translates to: LSVCIRSINTPA*FFLPEYQANEL
Trigger: CAGCTCATTTGCCTGATATTCAGGAAGAAAGAATCAAGCTGGGGTATTTATGCTTCTGATGCAAACACTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR GCA 90 bp GGCAAGTCTGGAGCCCCAAGTCCTGCCAACATGGTCCTGATGACACTCTGGGAACGCCGCCCAGGAAGCTaGTGTCCCACCAGACTCGGG +
Preference number: 4 (lower is better)
Translates to: GKSGAPSPANMVLMTLWERRPGS*CPTRLG
Trigger: CCCGAGTCTGGTGGGACAGCAGCTTCCTGGGCGGCG...TTCCCAGAGTGTCATCAGGACCATGTTGGCAGGACTTGGGGCTCCAGACTTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR TCA 90 bp GCCAGTGCTGTTTTGGTGGCTGGAAACCAATGCAGCGGATGGATGGGAGAGGCCAGGAGAAACCAGCCCTaGGTGGCCAGCCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: ASAVLVAGNQCSGWMGEARRNQP*VASPAP
Trigger: AGGTGCTGGGCTGGCCACTCAGGGCTGGTTTCTCCT...GGCCTCTCCCATCCATCCGCTGCATTGGTTTCCAGCCACCAAAACAGCACTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR CCA 90 bp GTGTGGTGGCAAGTCTGGAGCCCCAAGTCCTGCCAACATGGTCCTGATGACACTAGGGCCAGGCTGACCTaGACAGTGCCACAGCGCCGT +
Preference number: 4 (lower is better)
Translates to: VWWQVWSPKSCQHGPDDTRARLT*TVPQRR
Trigger: ACGGCGCTGTGGCACTGTCCAGGTCAGCCTGGCCCT...AGTGTCATCAGGACCATGTTGGCAGGACTTGGGGCTCCAGACTTGCCACCACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR TCA 90 bp ATCCCCATAATTGCACTTTACCCACTGAGCCATAACCCAAGCCCACTTGCTCCCGCACCAGGGCCAGGCTaGCCTGGACAGTGCCACAGC +
Preference number: 4 (lower is better)
Translates to: IPIIALYPLSHNPSPLAPAPGPG*PGQCHS
Trigger: GCTGTGGCACTGTCCAGGTCAGCCTGGCCCTGGTGC...GGGAGCAAGTGGGCTTGGGTTATGGCTCAGTGGGTAAAGTGCAATTATGGGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR CCA 90 bp GCTCGTACCTGGCCAGTTGCAGCCAGGGGGCCAGTGCTGTTTTGGTGGCTGGAATGTAAGATGTGCTGCTaGGTTGGCCTGGTGAGATCG +
Preference number: 4 (lower is better)
Translates to: ARTWPVAARGPVLFWWLECKMCC*VGLVRS
Trigger: CGATCTCACCAGGCCAACCCAGCAGCACATCTTACA...TTCCAGCCACCAAAACAGCACTGGCCCCCTGGCTGCAACTGGCCAGGTACGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR CCA 90 bp GTGTGGTGGCAAGTCTGGAGCCCCAAGTCCTGCCAACATGGTCCTGATGACACTTTCCAGCCGCCTGAATaGGATGTCCGTCTGTCCATC +
Preference number: 4 (lower is better)
Translates to: VWWQVWSPKSCQHGPDDTFQPPE*DVRLSI
Trigger: GATGGACAGACGGACATCCCATTCAGGCGGCTGGAA...AGTGTCATCAGGACCATGTTGGCAGGACTTGGGGCTCCAGACTTGCCACCACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR TCA 90 bp CCTCCCTTCCCTTCTGACCAACCATTCCTGGCATGTCTGTCGCTGCTGCGCATTATGTCTCCAAGACGTTaGTGCAGTCTCAGGAGAAAC +
Preference number: 4 (lower is better)
Translates to: PPFPSDQPFLACLSLLRIMSPRR*CSLRRN
Trigger: GTTTCTCCTGAGACTGCATCAACGTCTTGGAGACAT...AATGCGCAGCAGCGACAGACATGCCAGGAATGGTTGGTCAGAAGGGAAGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CAA 72 bp GTGAACCCCAGAGGTCCCTCCTGTCTCCATTCCCTATaGATGATCTCATTGTCACAAGTGCCCATCACCGCA +
Preference number: 4 (lower is better)
Translates to: VNPRGPSCLHSL*MISLSQVPITA
Trigger: TGCGGTGATGGGCACTTGTGACAATGAGATCATCAATAGGGAATGGAGACAGGAGGGACCTCTGGGGTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR TCA 90 bp CCAGTGAACCCCAGAGGTCCCTCCTGTCTCCATTCCCTATTGATGATCTCATTGATCCACCACAAACACTaGAGGCTGTACCACACTCTC +
Preference number: 4 (lower is better)
Translates to: PVNPRGPSCLHSLLMISLIHHKH*RLYHTL
Trigger: GAGAGTGTGGTACAGCCTTCAGTGTTTGTGGTGGAT...CAATGAGATCATCAATAGGGAATGGAGACAGGAGGGACCTCTGGGGTTCACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CAA 72 bp GCCTCAGTTGTCATCTTCAGGAGCTATCGACTGAACTaGGAGCTCTTTGATTCAGCTAGACTGCCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: ASVVIFRSYRLN*ELFDSARLPGQ
Trigger: CTGGCCAGGCAGTCTAGCTGAATCAAAGAGCTCCAAGTTCAGTCGATAGCTCCTGAAGATGACAACTGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CAA 72 bp GGTCCCTCCTGTCTCCATTCCCTATTGATGATCTCATaGTCACAAGTGCCCATCACCGCATCTGTGTCTTTA +
Preference number: 4 (lower is better)
Translates to: GPSCLHSLLMIS*SQVPITASVSL
Trigger: TAAAGACACAGATGCGGTGATGGGCACTTGTGACAATGAGATCATCAATAGGGAATGGAGACAGGAGGGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
3UTR CAA 72 bp TCCAGCTCAAAACCCAGAAAGCCGAAATCTCAGTGTTaGCATCAGAAGCATAAATACCCCAGCTTGATTCTT +
Preference number: 4 (lower is better)
Translates to: SSSKPRKPKSQC*HQKHKYPSLIL
Trigger: AAGAATCAAGCTGGGGTATTTATGCTTCTGATGCAAACACTGAGATTTCGGCTTTCTGGGTTTTGAGCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS GCA 90 bp CCACCTCTTCCCCAGCCTCCAGATGTACCACGCCGCCCAGGAAGCTaGTGTCCCACCAGACTCGGGAGCTGTTGGCCCGGCCACAGGGTG +
Preference number: 5 (lower is better)
Translates to: PPLPQPPDVPRRPGS*CPTRLGSCWPGHRV
Trigger: CACCCTGTGGCCGGGCCAACAGCTCCCGAGTCTGGTGGGACAGCAGCTTCCTGGGCGGCGTGGTACATCTGGAGGCTGGGGAAGAGGTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR CAA 90 bp GCTCGTACCTGGCCAGTTGCAGCCAGGGGGCCAGTGCTGTTTTGGTGGCTGGAACAGACTCGGGAGCTGTaGGCCCGGCCACAGGGTGAC +
Preference number: 5 (lower is better)
Translates to: ARTWPVAARGPVLFWWLEQTREL*ARPQGD
Trigger: GTCACCCTGTGGCCGGGCCAACAGCTCCCGAGTCTG...TTCCAGCCACCAAAACAGCACTGGCCCCCTGGCTGCAACTGGCCAGGTACGAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CCA 90 bp ACCAGGGCCAGGCTGACCTGGACAGTGCCACAGCGCCGTCTCCGGTaGTTCTGTTCCAGCCGCCTGAATGGGATGTCCGTCTGTCCATCC +
Preference number: 5 (lower is better)
Translates to: TRARLTWTVPQRRLR*FCSSRLNGMSVCPS
Trigger: GGATGGACAGACGGACATCCCATTCAGGCGGCTGGAACAGAACCACCGGAGACGGCGCTGTGGCACTGTCCAGGTCAGCCTGGCCCTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CCA 90 bp CATTGGCCAGCCCCTGGGGGCAGCCCACGCCGCTCAGCTGCACTTTaGAGTACACATAGTAGTAACCGGGCTCCATGGTCACCAGGGCCC +
Preference number: 5 (lower is better)
Translates to: HWPAPGGSPRRSAAL*STHSSNRAPWSPGP
Trigger: GGGCCCTGGTGACCATGGAGCCCGGTTACTACTATGTGTACTCCAAAGTGCAGCTGAGCGGCGTGGGCTGCCCCCAGGGGCTGGCCAATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS TCA 90 bp ACCAGACTCGGGAGCTGTTGGCCCGGCCACAGGGTGACCGCCGACTaGCCAGCAGTTCTAACTCCTTCGGGTAGCGGGATGTGCGCTTGT +
Preference number: 5 (lower is better)
Translates to: TRLGSCWPGHRVTAD*PAVLTPSGSGMCAC
Trigger: ACAAGCGCACATCCCGCTACCCGAAGGAGTTAGAACTGCTGGTCAGTCGGCGGTCACCCTGTGGCCGGGCCAACAGCTCCCGAGTCTGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS TCA 90 bp GGACAGTGCCACAGCGCCGTCTCCGGTGGTTCTGTTCCAGCCGCCTaGATGGGATGTCCGTCTGTCCATCCACCACAAACACTGAAGGCT +
Preference number: 5 (lower is better)
Translates to: GQCHSAVSGGSVPAA*MGCPSVHPPQTLKA
Trigger: AGCCTTCAGTGTTTGTGGTGGATGGACAGACGGACATCCCATTCAGGCGGCTGGAACAGAACCACCGGAGACGGCGCTGTGGCACTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CCA 90 bp CGCTCAGCTGCACTTTGGAGTACACATAGTAGTAACCGGGCTCCATaGTCACCAGGGCCCCATCATGATACGTCAAGCCCCTCAAGAAGG +
Preference number: 5 (lower is better)
Translates to: RSAALWSTHSSNRAP*SPGPHHDTSSPSRR
Trigger: CCTTCTTGAGGGGCTTGACGTATCATGATGGGGCCCTGGTGACCATGGAGCCCGGTTACTACTATGTGTACTCCAAAGTGCAGCTGAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS GCA 90 bp CCTGGTGAGATCGTTGATCTTGTATCAGCTTCTCCCAGGAGCCTTTaGCTCCATCTGGCAGATGAGCTACTATGTCTCCAAGACGTTGAT +
Preference number: 5 (lower is better)
Translates to: PGEIVDLVSASPRSL*LHLADELLCLQDVD
Trigger: ATCAACGTCTTGGAGACATAGTAGCTCATCTGCCAGATGGAGGCAAAGGCTCCTGGGAGAAGCTGATACAAGATCAACGATCTCACCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CCA 90 bp TCGTTGATCTTGTATCAGCTTCTCCCAGGAGCCTTTGCCTCCATCTaGCAGATGAGCTACTATGTCTCCAAGACGTTGATGCAGTCTCAG +
Preference number: 5 (lower is better)
Translates to: SLILYQLLPGAFASI*QMSYYVSKTLMQSQ
Trigger: CTGAGACTGCATCAACGTCTTGGAGACATAGTAGCTCATCTGCCAGATGGAGGCAAAGGCTCCTGGGAGAAGCTGATACAAGATCAACGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR CAA 90 bp ATCCCCATAATTGCACTTTACCCACTGAGCCATAACCCAAGCCCACTTGCTCCCGTGAGATCGTTGATCTaGTATCAGCTTCTCCCAGGA +
Preference number: 5 (lower is better)
Translates to: IPIIALYPLSHNPSPLAPVRSLI*YQLLPG
Trigger: TCCTGGGAGAAGCTGATACAAGATCAACGATCTCAC...GGGAGCAAGTGGGCTTGGGTTATGGCTCAGTGGGTAAAGTGCAATTATGGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS-3UTR CAA 90 bp ATCCCCATAATTGCACTTTACCCACTGAGCCATAACCCAAGCCCACTTGCTCCCTATGTCTCCAAGACGTaGATGCAGTCTCAGGAGAAA +
Preference number: 5 (lower is better)
Translates to: IPIIALYPLSHNPSPLAPYVSKT*MQSQEK
Trigger: TTTCTCCTGAGACTGCATCAACGTCTTGGAGACATA...GGGAGCAAGTGGGCTTGGGTTATGGCTCAGTGGGTAAAGTGCAATTATGGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS GCA 72 bp CCCCAGCCTCCAGATGTACCACGCCGCCCAGGAAGCTaGTGTCCCACCAGACTCGGGAGCTGTTGGCCCGGC +
Preference number: 6 (lower is better)
Translates to: PQPPDVPRRPGS*CPTRLGSCWPG
Trigger: GCCGGGCCAACAGCTCCCGAGTCTGGTGGGACAGCAGCTTCCTGGGCGGCGTGGTACATCTGGAGGCTGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CAA 90 bp ACCACGCCGCCCAGGAAGCTGCTGTCCCACCAGACTCGGGAGCTGTaGGCCCGGCCACAGGGTGACCGCCGACTGACCAGCAGTTCTAAC +
Preference number: 6 (lower is better)
Translates to: TTPPRKLLSHQTREL*ARPQGDRRLTSSSN
Trigger: GTTAGAACTGCTGGTCAGTCGGCGGTCACCCTGTGGCCGGGCCAACAGCTCCCGAGTCTGGTGGGACAGCAGCTTCCTGGGCGGCGTGGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CCA 72 bp AGGCTGACCTGGACAGTGCCACAGCGCCGTCTCCGGTaGTTCTGTTCCAGCCGCCTGAATGGGATGTCCGTC +
Preference number: 6 (lower is better)
Translates to: RLTWTVPQRRLR*FCSSRLNGMSV
Trigger: GACGGACATCCCATTCAGGCGGCTGGAACAGAACCACCGGAGACGGCGCTGTGGCACTGTCCAGGTCAGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CCA 72 bp GCCCCTGGGGGCAGCCCACGCCGCTCAGCTGCACTTTaGAGTACACATAGTAGTAACCGGGCTCCATGGTCA +
Preference number: 6 (lower is better)
Translates to: APGGSPRRSAAL*STHSSNRAPWS
Trigger: TGACCATGGAGCCCGGTTACTACTATGTGTACTCCAAAGTGCAGCTGAGCGGCGTGGGCTGCCCCCAGGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CAA 90 bp GCCTTTGCCTCCATCTGGCAGATGAGCTACTATGTCTCCAAGACGTaGATGCAGTCTCAGGAGAAACCAGCCCTGAGTGGCCAGCCCAGC +
Preference number: 6 (lower is better)
Translates to: AFASIWQMSYYVSKT*MQSQEKPALSGQPS
Trigger: GCTGGGCTGGCCACTCAGGGCTGGTTTCTCCTGAGACTGCATCAACGTCTTGGAGACATAGTAGCTCATCTGCCAGATGGAGGCAAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CAA 72 bp ATGTGCTGCTGGGTTGGCCTGGTGAGATCGTTGATCTaGTATCAGCTTCTCCCAGGAGCCTTTGCCTCCATC +
Preference number: 6 (lower is better)
Translates to: MCCWVGLVRSLI*YQLLPGAFASI
Trigger: GATGGAGGCAAAGGCTCCTGGGAGAAGCTGATACAAGATCAACGATCTCACCAGGCCAACCCAGCAGCACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CAA 72 bp CATAACAGAGGTCCACCAATACCTATCAAGCTGGCGTaGGCTCCTGTAAGATGTGCTGCTGGGTTGGCCTGG +
Preference number: 6 (lower is better)
Translates to: HNRGPPIPIKLA*APVRCAAGLAW
Trigger: CCAGGCCAACCCAGCAGCACATCTTACAGGAGCCAACGCCAGCTTGATAGGTATTGGTGGACCTCTGTTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CAA 90 bp TCCTGTAAGATGTGCTGCTGGGTTGGCCTGGTGAGATCGTTGATCTaGTATCAGCTTCTCCCAGGAGCCTTTGCCTCCATCTGGCAGATG +
Preference number: 6 (lower is better)
Translates to: SCKMCCWVGLVRSLI*YQLLPGAFASIWQM
Trigger: CATCTGCCAGATGGAGGCAAAGGCTCCTGGGAGAAGCTGATACAAGATCAACGATCTCACCAGGCCAACCCAGCAGCACATCTTACAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CAA 72 bp TCCATCTGGCAGATGAGCTACTATGTCTCCAAGACGTaGATGCAGTCTCAGGAGAAACCAGCCCTGAGTGGC +
Preference number: 6 (lower is better)
Translates to: SIWQMSYYVSKT*MQSQEKPALSG
Trigger: GCCACTCAGGGCTGGTTTCTCCTGAGACTGCATCAACGTCTTGGAGACATAGTAGCTCATCTGCCAGATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS GCA 72 bp ACCTATCAAGCTGGCGTTGGCTCCTGTAAGATGTGCTaGTGGGTTGGCCTGGTGAGATCGTTGATCTTGTAT +
Preference number: 6 (lower is better)
Translates to: TYQAGVGSCKMC*WVGLVRSLILY
Trigger: ATACAAGATCAACGATCTCACCAGGCCAACCCAGCAGCACATCTTACAGGAGCCAACGCCAGCTTGATAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CCA 72 bp TATCAAGCTGGCGTTGGCTCCTGTAAGATGTGCTGCTaGGTTGGCCTGGTGAGATCGTTGATCTTGTATCAG +
Preference number: 6 (lower is better)
Translates to: YQAGVGSCKMCC*VGLVRSLILYQ
Trigger: CTGATACAAGATCAACGATCTCACCAGGCCAACCCAGCAGCACATCTTACAGGAGCCAACGCCAGCTTGATA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS CCA 72 bp TTGTATCAGCTTCTCCCAGGAGCCTTTGCCTCCATCTaGCAGATGAGCTACTATGTCTCCAAGACGTTGATG +
Preference number: 6 (lower is better)
Translates to: LYQLLPGAFASI*QMSYYVSKTLM
Trigger: CATCAACGTCTTGGAGACATAGTAGCTCATCTGCCAGATGGAGGCAAAGGCTCCTGGGAGAAGCTGATACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8
CDS GCA 72 bp ATCGTTGATCTTGTATCAGCTTCTCCCAGGAGCCTTTaGCTCCATCTGGCAGATGAGCTACTATGTCTCCAA +
Preference number: 6 (lower is better)
Translates to: IVDLVSASPRSL*LHLADELLCLQ
Trigger: TTGGAGACATAGTAGCTCATCTGCCAGATGGAGGCAAAGGCTCCTGGGAGAAGCTGATACAAGATCAACGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005976.8