Pregenerated sensors for TNFSF13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000089669Ensembl transcript IDs: ENSMUST00000018896.14, ENSMUST00000108648.3
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCAACCTGCCGCTAGATGGTGCTGCTGTTCTGGATGCATTCCAGTaGACAAGGCTTGGCACAGTGCGCAAAACCCCCTTCGCACACACA | + |
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Preference number: 1 (lower is better) Translates to: LNLPLDGAAVLDAFQ*TRLGTVRKTPFAHT Trigger: TGTGTGTGCGAAGGGGGTTTTGCGCACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| 3UTR GCA 90 bp | CTAGCAGAGACCATAGTCTTTCCTCAACCTGCCGCTAGATGGTGCTaGTGTTCTGGATGCATTCCAGTGGACAAGGCTTGGCACAGTGCG | + |
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Preference number: 1 (lower is better) Translates to: LAETIVFPQPAARWC*CSGCIPVDKAWHSA Trigger: CGCACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAGGAAAGACTATGGTCTCTGCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| 3UTR GCA 90 bp | ATAGTCTTTCCTCAACCTGCCGCTAGATGGTGCTGCTGTTCTGGATaGATTCCAGTGGACAAGGCTTGGCACAGTGCGCAAAACCCCCTT | + |
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Preference number: 1 (lower is better) Translates to: IVFPQPAARWCCCSG*IPVDKAWHSAQNPL Trigger: AAGGGGGTTTTGCGCACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAGGAAAGACTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| 3UTR GCA 90 bp | TCCCTAGCAGAGACCATAGTCTTTCCTCAACCTGCCGCTAGATGGTaGTGCTGTTCTGGATGCATTCCAGTGGACAAGGCTTGGCACAGT | + |
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Preference number: 1 (lower is better) Translates to: SLAETIVFPQPAARW*CCSGCIPVDKAWHS Trigger: ACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAGGAAAGACTATGGTCTCTGCTAGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| 3UTR CCA 90 bp | TTTTCCCTAGCAGAGACCATAGTCTTTCCTCAACCTGCCGCTAGATaGTGCTGCTGTTCTGGATGCATTCCAGTGGACAAGGCTTGGCAC | + |
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Preference number: 1 (lower is better) Translates to: FSLAETIVFPQPAAR*CCCSGCIPVDKAWH Trigger: GTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAGGAAAGACTATGGTCTCTGCTAGGGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| 3UTR-3UTR CCA 90 bp | AACCTGCCGCTAGATGGTGCTGCTGTTCTGGATGCATTCCAGTGGACAAGGCTTTGTCTAGCCAGTTTTTaGAATGGGAAATCCCCACCC | + |
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Preference number: 2 (lower is better) Translates to: NLPLDGAAVLDAFQWTRLCLASF*NGKSPP Trigger: GGGTGGGGATTTCCCATTCCAAAAACTGGCTAGACA...AAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| 3UTR-3UTR CCA 90 bp | AGGCAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCTGTCTAGCCAGTTTTTaGAATGGGAAATCCCCACCC | + |
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Preference number: 2 (lower is better) Translates to: RQREEQQSRQSHGELFLTCLASF*NGKSPP Trigger: GGGTGGGGATTTCCCATTCCAAAAACTGGCTAGACA...GGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| 3UTR CAA 90 bp | CAAAGGGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTaGACCGTTCCTTGTCCTTTGTCTAGCCAGTTTTTGGAATGGGAA | + |
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Preference number: 2 (lower is better) Translates to: QREEQQSRQSHGELF*TVPCPLSSQFLEWE Trigger: TTCCCATTCCAAAAACTGGCTAGACAAAGGACAAGGAACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCCCTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| 3UTR-3UTR CAA 90 bp | AGATGGTGCTGCTGTTCTGGATGCATTCCAGTGGACAAGGCTTGGCACAGTGCGCATGGAGAGCTGTTCTaGACCGTTCCTTGTCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: RWCCCSGCIPVDKAWHSAHGELF*TVPCPL Trigger: CAAAGGACAAGGAACGGTCAAGAACAGCTCTCCATG...CGCACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| 3UTR-3UTR CAA 90 bp | ATCCATGGAGTCAAAGCCCAGATAGTGGGAGCGGGAAAGGCAAAGGGAGGAACACATGGAGAGCTGTTCTaGACCGTTCCTTGTCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: IHGVKAQIVGAGKAKGGTHGELF*TVPCPL Trigger: CAAAGGACAAGGAACGGTCAAGAACAGCTCTCCATG...TGTTCCTCCCTTTGCCTTTCCCGCTCCCACTATCTGGGCTTTGACTCCATGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| 3UTR-3UTR CAA 90 bp | GCAGAGACCATAGTCTTTCCTCAACCTGCCGCTAGATGGTGCTGCTGTTCTGGATTGTCTAGCCAGTTTTaGGAATGGGAAATCCCCACC | + |
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Preference number: 3 (lower is better) Translates to: AETIVFPQPAARWCCCSGLSSQF*EWEIPT Trigger: GGTGGGGATTTCCCATTCCAAAAACTGGCTAGACAA...TCCAGAACAGCAGCACCATCTAGCGGCAGGTTGAGGAAAGACTATGGTCTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| 3UTR CAA 72 bp | GTGCTGCTGTTCTGGATGCATTCCAGTGGACAAGGCTaGGCACAGTGCGCAAAACCCCCTTCGCACACACAA | + |
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Preference number: 4 (lower is better) Translates to: VLLFWMHSSGQG*AQCAKPPSHTQ Trigger: TTGTGTGTGCGAAGGGGGTTTTGCGCACTGTGCCAAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS-3UTR GCA 90 bp | AACCTGCCGCTAGATGGTGCTGCTGTTCTGGATGCATTCCAGTGGACAAGGCTTAGGACATCAGGACTCTaGTCCCAGAGGCTCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: NLPLDGAAVLDAFQWTRLRTSGL*SQRLCH Trigger: ATGGCAGAGCCTCTGGGAGCAGAGTCCTGATGTCCT...AAGCCTTGTCCACTGGAATGCATCCAGAACAGCAGCACCATCTAGCGGCAGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS-3UTR GCA 90 bp | GGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTTCCTTGAGGACATCAGGACTCTaGTCCCAGAGGCTCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: GGTTVKAKPWRAVLDRSLRTSGL*SQRLCH Trigger: ATGGCAGAGCCTCTGGGAGCAGAGTCCTGATGTCCT...CAAGGAACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS-3UTR GCA 90 bp | ATCCATGGAGTCAAAGCCCAGATAGTGGGAGCGGGAAAGGCAAAGGGAGGAACACGCCTAAGTACTGGTTaGCACATCACCTCTGTCACG | + |
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Preference number: 4 (lower is better) Translates to: IHGVKAQIVGAGKAKGGTRLSTG*HITSVT Trigger: CGTGACAGAGGTGATGTGGCAACCAGTACTTAGGCG...TGTTCCTCCCTTTGCCTTTCCCGCTCCCACTATCTGGGCTTTGACTCCATGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS-3UTR GCA 90 bp | GAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTTCCTTGTCGCCTAAGTACTGGTTaGCACATCACCTCTGTCACG | + |
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Preference number: 4 (lower is better) Translates to: EEQQSRQSHGELFLTVPCRLSTG*HITSVT Trigger: CGTGACAGAGGTGATGTGGCAACCAGTACTTAGGCG...ACAAGGAACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS-3UTR CCA 90 bp | GGAGGAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTTGACCGTTCCTTGGAGTTCTTGTGCTTCTaGGTGAGTACTGCTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: GGTTVKAKPWRAVLDRSLEFLCF*VSTALL Trigger: AAGGAGAGCAGTACTCACCCAGAAGCACAAGAACTC...CAAGGAACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTCCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108648.3 |
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| 3UTR CAA 72 bp | AGCCATGGAGAGCTGTTCTTGACCGTTCCTTGTCCTTaGTCTAGCCAGTTTTTGGAATGGGAAATCCCCACC | + |
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Preference number: 4 (lower is better) Translates to: SHGELFLTVPCP*SSQFLEWEIPT Trigger: GGTGGGGATTTCCCATTCCAAAAACTGGCTAGACAAAGGACAAGGAACGGTCAAGAACAGCTCTCCATGGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS-3UTR GCA 90 bp | TATCCATGGAGTCAAAGCCCAGATAGTGGGAGCGGGAAAGGCAAAGGGAGGAACAGAAAGGCTAAGTTTTaGGTTTGCCCGTGGAATTTT | + |
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Preference number: 4 (lower is better) Translates to: YPWSQSPDSGSGKGKGRNRKAKF*VCPWNF Trigger: AAAATTCCACGGGCAAACGCAAAACTTAGCCTTTCT...GTTCCTCCCTTTGCCTTTCCCGCTCCCACTATCTGGGCTTTGACTCCATGGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| 3UTR CAA 72 bp | GAACAACAGTCAAGGCAAAGCCATGGAGAGCTGTTCTaGACCGTTCCTTGTCCTTTGTCTAGCCAGTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: EQQSRQSHGELF*TVPCPLSSQFL Trigger: CAAAAACTGGCTAGACAAAGGACAAGGAACGGTCAAGAACAGCTCTCCATGGCTTTGCCTTGACTGTTGTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS GCA 90 bp | ACATCAGGACTCTGCTCCCAGAGGCTCTGCCATGGGCGCTCTCCCTaGTTCTGGGAAGGCCCTCCACTCCGCTGCAGCCGGCTCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: TSGLCSQRLCHGRSP*FWEGPPLRCSRLTS Trigger: GGAGGTGAGCCGGCTGCAGCGGAGTGGAGGGCCTTCCCAGAAGCAGGGAGAGCGCCCATGGCAGAGCCTCTGGGAGCAGAGTCCTGATGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS GCA 90 bp | GGCCCTCCACTCCGCTGCAGCCGGCTCACCTCCCGCCTTAGGCTTTaGAGCTCTGTCTGTTGGATCAGTAGTGCGACAGCACAAGTCACA | + |
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Preference number: 5 (lower is better) Translates to: GPPLRCSRLTSRLRL*SSVCWISSATAQVT Trigger: TGTGACTTGTGCTGTCGCACTACTGATCCAACAGACAGAGCTGCAAAGCCTAAGGCGGGAGGTGAGCCGGCTGCAGCGGAGTGGAGGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS CCA 90 bp | TGCAGCCGGCTCACCTCCCGCCTTAGGCTTTGCAGCTCTGTCTGTTaGATCAGTAGTGCGACAGCACAAGTCACAGCCCCCAGAACTGCC | + |
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Preference number: 5 (lower is better) Translates to: CSRLTSRLRLCSSVC*ISSATAQVTAPRTA Trigger: GGCAGTTCTGGGGGCTGTGACTTGTGCTGTCGCACTACTGATCCAACAGACAGAGCTGCAAAGCCTAAGGCGGGAGGTGAGCCGGCTGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS GCA 90 bp | CATCACCTCTGTCACGTCAGAGTTCTTGTGCTTCTGGGTGAGTACTaGTCTCCTTCTCCGAGATTTCGCCCCATCCTTCCAGGCTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: HHLCHVRVLVLLGEY*SPSPRFRPILPGFQ Trigger: CTGGAAGCCTGGAAGGATGGGGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAACTCTGACGTGACAGAGGTGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108648.3 |
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| CDS TCA 90 bp | CTGGAACAAGATGCAGGACTGAGTGCTTCTTCTTGTGCTTCTGGGTaGGTACTGCTCTCCTTCTCCGAGATTTCGCCCCATCCTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: LEQDAGLSASSCASG*VLLSFSEISPHPSR Trigger: CCTGGAAGGATGGGGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS GCA 90 bp | GTAATGTTAACTGGAACAAGATGCAGGACTGAGTGCTTCTTCTTGTaGTTCTGGGTGAGTACTGCTCTCCTTCTCCGAGATTTCGCCCCA | + |
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Preference number: 5 (lower is better) Translates to: VMLTGTRCRTECFFL*FWVSTALLLRDFAP Trigger: TGGGGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS GCA 90 bp | GAGTCCTTGGAGGTAATGTTAACTGGAACAAGATGCAGGACTGAGTaGTTCTTCTTGTGCTTCTGGGTGAGTACTGCTCTCCTTCTCCGA | + |
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Preference number: 5 (lower is better) Translates to: ESLEVMLTGTRCRTE*FFLCFWVSTALLLR Trigger: TCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS TCA 90 bp | GTCAGAGTCCTTGGAGGTAATGTTAACTGGAACAAGATGCAGGACTaGGTGCTTCTTCTTGTGCTTCTGGGTGAGTACTGCTCTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: VRVLGGNVNWNKMQD*VLLLVLLGEYCSPS Trigger: AGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGACTCTGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS TCA 90 bp | TGTAGCAGCTATTGTAGGCACGGTCAGGATCAGAAGGCATACTTCTaGTACATCGGAATAGAGTTTCTCTTCTCCCTTGTCCTTCCCGAG | + |
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Preference number: 5 (lower is better) Translates to: CSSYCRHGQDQKAYF*YIGIEFLFSLVLPE Trigger: CTCGGGAAGGACAAGGGAGAAGAGAAACTCTATTCCGATGTATCAGAAGTATGCCTTCTGATCCTGACCGTGCCTACAATAGCTGCTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS GCA 72 bp | CTCTGCTCCCAGAGGCTCTGCCATGGGCGCTCTCCCTaGTTCTGGGAAGGCCCTCCACTCCGCTGCAGCCGG | + |
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Preference number: 6 (lower is better) Translates to: LCSQRLCHGRSP*FWEGPPLRCSR Trigger: CCGGCTGCAGCGGAGTGGAGGGCCTTCCCAGAAGCAGGGAGAGCGCCCATGGCAGAGCCTCTGGGAGCAGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS GCA 72 bp | GCTTCCAGGACATCAGGACTCTGCTCCCAGAGGCTCTaGCATGGGCGCTCTCCCTGCTTCTGGGAAGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: ASRTSGLCSQRL*HGRSPCFWEGP Trigger: AGGGCCTTCCCAGAAGCAGGGAGAGCGCCCATGGCAGAGCCTCTGGGAGCAGAGTCCTGATGTCCTGGAAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS GCA 72 bp | CTCCGCTGCAGCCGGCTCACCTCCCGCCTTAGGCTTTaGAGCTCTGTCTGTTGGATCAGTAGTGCGACAGCA | + |
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Preference number: 6 (lower is better) Translates to: LRCSRLTSRLRL*SSVCWISSATA Trigger: TGCTGTCGCACTACTGATCCAACAGACAGAGCTGCAAAGCCTAAGGCGGGAGGTGAGCCGGCTGCAGCGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS GCA 72 bp | TGGGCCTCCAGGCCTCTCCCACGCCTAAGTACTGGTTaGCACATCACCTCTGTCACGTCAGAGTCCTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: WASRPLPRLSTG*HITSVTSESLE Trigger: CTCCAAGGACTCTGACGTGACAGAGGTGATGTGGCAACCAGTACTTAGGCGTGGGAGAGGCCTGGAGGCCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS GCA 72 bp | TGGGCCTCCAGGCCTCTCCCACGCCTAAGTACTGGTTaGCACATCACCTCTGTCACGTCAGAGTTCTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: WASRPLPRLSTG*HITSVTSEFLC Trigger: GCACAAGAACTCTGACGTGACAGAGGTGATGTGGCAACCAGTACTTAGGCGTGGGAGAGGCCTGGAGGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108648.3 |
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| CDS CCA 72 bp | CTCACCTCCCGCCTTAGGCTTTGCAGCTCTGTCTGTTaGATCAGTAGTGCGACAGCACAAGTCACAGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: LTSRLRLCSSVC*ISSATAQVTAP Trigger: GGGGGCTGTGACTTGTGCTGTCGCACTACTGATCCAACAGACAGAGCTGCAAAGCCTAAGGCGGGAGGTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018896.14 ENSMUST00000108648.3 |
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| CDS TCA 72 bp | GATGCAGGACTGAGTGCTTCTTCTTGTGCTTCTGGGTaGGTACTGCTCTCCTTCTCCGAGATTTCGCCCCAT | + |
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Preference number: 6 (lower is better) Translates to: DAGLSASSCASG*VLLSFSEISPH Trigger: ATGGGGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS TCA 72 bp | TCACCTCTGTCACGTCAGAGTTCTTGTGCTTCTGGGTaGGTACTGCTCTCCTTCTCCGAGATTTCGCCCCAT | + |
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Preference number: 6 (lower is better) Translates to: SPLSRQSSCASG*VLLSFSEISPH Trigger: ATGGGGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAACTCTGACGTGACAGAGGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108648.3 |
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| CDS CCA 72 bp | CACATCACCTCTGTCACGTCAGAGTTCTTGTGCTTCTaGGTGAGTACTGCTCTCCTTCTCCGAGATTTCGCC | + |
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Preference number: 6 (lower is better) Translates to: HITSVTSEFLCF*VSTALLLRDFA Trigger: GGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAACTCTGACGTGACAGAGGTGATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108648.3 |
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| CDS CAA 90 bp | CGCCTAAGTACTGGTTGCCACATCACCTCTGTCACGTCAGAGTCCTaGGAGGTAATGTTAACTGGAACAAGATGCAGGACTGAGTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: RLSTGCHITSVTSES*EVMLTGTRCRTECF Trigger: GAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGACTCTGACGTGACAGAGGTGATGTGGCAACCAGTACTTAGGCG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS GCA 72 bp | ACTGGAACAAGATGCAGGACTGAGTGCTTCTTCTTGTaGTTCTGGGTGAGTACTGCTCTCCTTCTCCGAGAT | + |
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Preference number: 6 (lower is better) Translates to: TGTRCRTECFFL*FWVSTALLLRD Trigger: ATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS CAA 90 bp | GAGGTAATGTTAACTGGAACAAGATGCAGGACTGAGTGCTTCTTCTaGTGCTTCTGGGTGAGTACTGCTCTCCTTCTCCGAGATTTCGCC | + |
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Preference number: 6 (lower is better) Translates to: EVMLTGTRCRTECFF*CFWVSTALLLRDFA Trigger: GGCGAAATCTCGGAGAAGGAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS TCA 72 bp | CTTGGAGGTAATGTTAACTGGAACAAGATGCAGGACTaGGTGCTTCTTCTTGTGCTTCTGGGTGAGTACTGC | + |
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Preference number: 6 (lower is better) Translates to: LGGNVNWNKMQD*VLLLVLLGEYC Trigger: GCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS GCA 72 bp | GAGGTAATGTTAACTGGAACAAGATGCAGGACTGAGTaGTTCTTCTTGTGCTTCTGGGTGAGTACTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: EVMLTGTRCRTE*FFLCFWVSTAL Trigger: GAGAGCAGTACTCACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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| CDS GCA 72 bp | TCAGAGTCCTTGGAGGTAATGTTAACTGGAACAAGATaGAGGACTGAGTGCTTCTTCTTGTGCTTCTGGGTG | + |
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Preference number: 6 (lower is better) Translates to: SESLEVMLTGTR*RTECFFLCFWV Trigger: CACCCAGAAGCACAAGAAGAAGCACTCAGTCCTGCATCTTGTTCCAGTTAACATTACCTCCAAGGACTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018896.14 |
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