RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNFSF12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000097328

Ensembl transcript IDs: ENSMUST00000181261.2, ENSMUST00000181810.8

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCTCTGGCTTCCTGCCACCAGGTCCAGCCCATCTCAGTGCCTGGTaGACAAAGTCAATAAACACGTGGTCGGGTGAGTGGGTGGGGGAG +
Preference number: 1 (lower is better)
Translates to: FSGFLPPGPAHLSAW*TKSINTWSGEWVGE
Trigger: CTCCCCCACCCACTCACCCGACCACGTGTTTATTGACTTTGTGCACCAGGCACTGAGATGGGCTGGACCTGGTGGCAGGAAGCCAGAGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR CCA 90 bp AGGTTCTCTGGCTTCCTGCCACCAGGTCCAGCCCATCTCAGTGCCTaGTGCACAAAGTCAATAAACACGTGGTCGGGTGAGTGGGTGGGG +
Preference number: 1 (lower is better)
Translates to: RFSGFLPPGPAHLSA*CTKSINTWSGEWVG
Trigger: CCCCACCCACTCACCCGACCACGTGTTTATTGACTTTGTGCACCAGGCACTGAGATGGGCTGGACCTGGTGGCAGGAAGCCAGAGAACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR CCA 90 bp GGTCCAGCCCATCTCAGTGCCTGGTGCACAAAGTCAATAAACACGTaGTCGGGTGAGTGGGTGGGGGAGTCAGGGATAAGTAGGGGCTTT +
Preference number: 1 (lower is better)
Translates to: GPAHLSAWCTKSINT*SGEWVGESGISRGF
Trigger: AAAGCCCCTACTTATCCCTGACTCCCCCACCCACTCACCCGACCACGTGTTTATTGACTTTGTGCACCAGGCACTGAGATGGGCTGGACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR CCA 90 bp AGAGCAAGGATACGTCTGTGGAATGGAAAACATGTGAACAAGCTCTaGCTGCCTTTGAGGAGAGGACAGGACTGGACCAAGGAGCAGCGA +
Preference number: 1 (lower is better)
Translates to: RARIRLWNGKHVNKL*LPLRRGQDWTKEQR
Trigger: TCGCTGCTCCTTGGTCCAGTCCTGTCCTCTCCTCAAAGGCAGCCAGAGCTTGTTCACATGTTTTCCATTCCACAGACGTATCCTTGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR-3UTR TCA 90 bp GGCATGCAGGTCCCTGTTCCCCAAAGCCTAAATCCCCTTCCCACAATCTTCAGTAGCTCTGGCTGCCTTTaGGGAGAGGACAGGACTGGA +
Preference number: 2 (lower is better)
Translates to: GMQVPVPQSLNPLPTIFSSSGCL*GEDRTG
Trigger: TCCAGTCCTGTCCTCTCCTCAAAGGCAGCCAGAGCT...ACTGAAGATTGTGGGAAGGGGATTTAGGCTTTGGGGAACAGGGACCTGCATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR CAA 90 bp ATACGTCTGTGGAATGGAAAACATGTGAACAAGCTCTGGCTGCCTTaGAGGAGAGGACAGGACTGGACCAAGGAGCAGCGAGGGGGTGGA +
Preference number: 2 (lower is better)
Translates to: IRLWNGKHVNKLWLP*RRGQDWTKEQRGGG
Trigger: TCCACCCCCTCGCTGCTCCTTGGTCCAGTCCTGTCCTCTCCTCAAAGGCAGCCAGAGCTTGTTCACATGTTTTCCATTCCACAGACGTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR-3UTR TCA 90 bp AGGTGGATAGTTGTGGTGGGATGGGATGTTAAAGAAGAGCAAGGATACGTCTGTGGTAGGGAGGTGTGGTaGTGCTCCTGGAGCCAGGGA +
Preference number: 2 (lower is better)
Translates to: RWIVVVGWDVKEEQGYVCGREVW*CSWSQG
Trigger: TCCCTGGCTCCAGGAGCATCACCACACCTCCCTACC...ACAGACGTATCCTTGCTCTTCTTTAACATCCCATCCCACCACAACTATCCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR-3UTR CCA 90 bp GGAGCTTGTCCCCAGCTCTTCCCCCTCACAGTTGGGAACTTCTGGCCTAGTCCCATAGTTGTGGTGGGATaGGATGTTAAAGAAGAGCAA +
Preference number: 2 (lower is better)
Translates to: GACPQLFPLTVGNFWPSPIVVVG*DVKEEQ
Trigger: TTGCTCTTCTTTAACATCCCATCCCACCACAACTAT...GGGACTAGGCCAGAAGTTCCCAACTGTGAGGGGGAAGAGCTGGGGACAAGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR-3UTR CCA 90 bp GGCATGCAGGTCCCTGTTCCCCAAAGCCTAAATCCCCTTCCCACAATCTTCAGTGCCCATCTCAGTGCCTaGTGCACAAAGTCAATAAAC +
Preference number: 2 (lower is better)
Translates to: GMQVPVPQSLNPLPTIFSAHLSA*CTKSIN
Trigger: GTTTATTGACTTTGTGCACCAGGCACTGAGATGGGC...ACTGAAGATTGTGGGAAGGGGATTTAGGCTTTGGGGAACAGGGACCTGCATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR-3UTR CCA 90 bp AGGTGGATAGTTGTGGTGGGATGGGATGTTAAAGAAGAGCAAGGATACGTCTGTCATGTGAACAAGCTCTaGCTGCCTTTGAGGAGAGGA +
Preference number: 2 (lower is better)
Translates to: RWIVVVGWDVKEEQGYVCHVNKL*LPLRRG
Trigger: TCCTCTCCTCAAAGGCAGCCAGAGCTTGTTCACATG...ACAGACGTATCCTTGCTCTTCTTTAACATCCCATCCCACCACAACTATCCACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR-3UTR GCA 90 bp AGCCTAAATCCCCTTCCCACAATCTTCAGTTACTCTGAACCCCAAAGAAGAGAATCCAGCCCATCTCAGTaGCTGGTGCACAAAGTCAAT +
Preference number: 2 (lower is better)
Translates to: SLNPLPTIFSYSEPQRRESSPSQ*LVHKVN
Trigger: ATTGACTTTGTGCACCAGGCACTGAGATGGGCTGGA...TTCTCTTCTTTGGGGTTCAGAGTAACTGAAGATTGTGGGAAGGGGATTTAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR-3UTR CCA 90 bp AGCCTAAATCCCCTTCCCACAATCTTCAGTTACTCTGAACCCCAAAGAAGAGAAGATACGTCTGTGGAATaGAAAACATGTGAACAAGCT +
Preference number: 2 (lower is better)
Translates to: SLNPLPTIFSYSEPQRREDTSVE*KTCEQA
Trigger: AGCTTGTTCACATGTTTTCCATTCCACAGACGTATC...TTCTCTTCTTTGGGGTTCAGAGTAACTGAAGATTGTGGGAAGGGGATTTAGGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR CCA 72 bp AACAAGCTCTGGCTGCCTTTGAGGAGAGGACAGGACTaGACCAAGGAGCAGCGAGGGGGTGGAGGAGTGGGG +
Preference number: 3 (lower is better)
Translates to: NKLWLPLRRGQD*TKEQRGGGGVG
Trigger: CCCCACTCCTCCACCCCCTCGCTGCTCCTTGGTCCAGTCCTGTCCTCTCCTCAAAGGCAGCCAGAGCTTGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR GCA 72 bp GGAACTTCTGGCCTAGTCCCAGGTTCTCTGGCTTCCTaGCACCAGGTCCAGCCCATCTCAGTGCCTGGTGCA +
Preference number: 3 (lower is better)
Translates to: GTSGLVPGSLAS*HQVQPISVPGA
Trigger: TGCACCAGGCACTGAGATGGGCTGGACCTGGTGGCAGGAAGCCAGAGAACCTGGGACTAGGCCAGAAGTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR GCA 72 bp CTCTGGCTTCCTGCCACCAGGTCCAGCCCATCTCAGTaGCTGGTGCACAAAGTCAATAAACACGTGGTCGGG +
Preference number: 3 (lower is better)
Translates to: LWLPATRSSPSQ*LVHKVNKHVVG
Trigger: CCCGACCACGTGTTTATTGACTTTGTGCACCAGGCACTGAGATGGGCTGGACCTGGTGGCAGGAAGCCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR-3UTR CAA 90 bp GGCATGCAGGTCCCTGTTCCCCAAAGCCTAAATCCCCTTCCCACAATCTTCAGTAAGCTCTGGCTGCCTTaGAGGAGAGGACAGGACTGG +
Preference number: 3 (lower is better)
Translates to: GMQVPVPQSLNPLPTIFSKLWLP*RRGQDW
Trigger: CCAGTCCTGTCCTCTCCTCAAAGGCAGCCAGAGCTT...ACTGAAGATTGTGGGAAGGGGATTTAGGCTTTGGGGAACAGGGACCTGCATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR CCA 72 bp TGGTGCACAAAGTCAATAAACACGTGGTCGGGTGAGTaGGTGGGGGAGTCAGGGATAAGTAGGGGCTTTGGG +
Preference number: 3 (lower is better)
Translates to: WCTKSINTWSGE*VGESGISRGFG
Trigger: CCCAAAGCCCCTACTTATCCCTGACTCCCCCACCCACTCACCCGACCACGTGTTTATTGACTTTGTGCACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR CCA 72 bp CATCTCAGTGCCTGGTGCACAAAGTCAATAAACACGTaGTCGGGTGAGTGGGTGGGGGAGTCAGGGATAAGT +
Preference number: 3 (lower is better)
Translates to: HLSAWCTKSINT*SGEWVGESGIS
Trigger: ACTTATCCCTGACTCCCCCACCCACTCACCCGACCACGTGTTTATTGACTTTGTGCACCAGGCACTGAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR TCA 72 bp AAGCCTAAATCCCCTTCCCACAATCTTCAGTTACTCTaGACCCCAAAGAAGAGAAATCATGATTTATTCTCT +
Preference number: 3 (lower is better)
Translates to: KPKSPSHNLQLL*TPKKRNHDLFS
Trigger: AGAGAATAAATCATGATTTCTCTTCTTTGGGGTTCAGAGTAACTGAAGATTGTGGGAAGGGGATTTAGGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS-3UTR TCA 90 bp GGAGCTTGTCCCCAGCTCTTCCCCCTCACAGTTGGGAACTTCTGGCCTAGTCCCGGGGCAGCCTTAAGATaGGCCCAGGGGAGGGTGCGG +
Preference number: 4 (lower is better)
Translates to: GACPQLFPLTVGNFWPSPGAALR*AQGRVR
Trigger: CCGCACCCTCCCCTGGGCTCATCTTAAGGCTGCCCC...GGGACTAGGCCAGAAGTTCCCAACTGTGAGGGGGAAGAGCTGGGGACAAGCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
3UTR CAA 72 bp AGGGAGGAGCTTGTCCCCAGCTCTTCCCCCTCACAGTaGGGAACTTCTGGCCTAGTCCCAGGTTCTCTGGCT +
Preference number: 4 (lower is better)
Translates to: REELVPSSSPSQ*GTSGLVPGSLA
Trigger: AGCCAGAGAACCTGGGACTAGGCCAGAAGTTCCCAACTGTGAGGGGGAAGAGCTGGGGACAAGCTCCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS-3UTR GCA 90 bp GGCATGCAGGTCCCTGTTCCCCAAAGCCTAAATCCCCTTCCCACAATCTTCAGTGAGCCCAGGGGAGGGTaGGGATCCGAAGGGAAGACC +
Preference number: 4 (lower is better)
Translates to: GMQVPVPQSLNPLPTIFSEPRGG*GSEGKT
Trigger: GGTCTTCCCTTCGGATCCGCACCCTCCCCTGGGCTC...ACTGAAGATTGTGGGAAGGGGATTTAGGCTTTGGGGAACAGGGACCTGCATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS-3UTR CCA 90 bp AGGTGGATAGTTGTGGTGGGATGGGATGTTAAAGAAGAGCAAGGATACGTCTGTAACAGCCCAGACACCTaGCACAAACGGAGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: RWIVVVGWDVKEEQGYVCNSPDT*HKRSWG
Trigger: GCCCCAGCTCCGTTTGTGCCAGGTGTCTGGGCTGTT...ACAGACGTATCCTTGCTCTTCTTTAACATCCCATCCCACCACAACTATCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS GCA 90 bp CTCTGCTGTCAGCTCCTCCTGAGAAGGCTCCTGGGCAGACAGCGTTaGCCAGCTCCCCAGGCTGACCACGACCAGCAGGAGGCCAAGGCA +
Preference number: 5 (lower is better)
Translates to: LCCQLLLRRLLGRQR*PAPQADHDQQEAKA
Trigger: TGCCTTGGCCTCCTGCTGGTCGTGGTCAGCCTGGGGAGCTGGGCAACGCTGTCTGCCCAGGAGCCTTCTCAGGAGGAGCTGACAGCAGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS CCA 90 bp ATCCGAAGGGAAGACCCTGGCCGCAGCGGCAACAGCCCAGACACCTaGCACAAACGGAGCTGGGGCCCAGGAGAGCTTGCTGCTGTGGCT +
Preference number: 5 (lower is better)
Translates to: IRREDPGRSGNSPDT*HKRSWGPGELAAVA
Trigger: AGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGGTGTCTGGGCTGTTGCCGCTGCGGCCAGGGTCTTCCCTTCGGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS CCA 90 bp CCTGGCCGCAGCGGCAACAGCCCAGACACCTGGCACAAACGGAGCTaGGGCCCAGGAGAGCTTGCTGCTGTGGCTGAGAATTCTTCCAGG +
Preference number: 5 (lower is better)
Translates to: PGRSGNSPDTWHKRS*GPGELAAVAENSSR
Trigger: CCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGGTGTCTGGGCTGTTGCCGCTGCGGCCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS TCA 90 bp CTGGCACAAACGGAGCTGGGGCCCAGGAGAGCTTGCTGCTGTGGCTaGGAATTCTTCCAGGCAGCGCAGGGCCAGCACACCGTTCACCAG +
Preference number: 5 (lower is better)
Translates to: LAQTELGPRRACCCG*EFFQAAQGQHTVHQ
Trigger: CTGGTGAACGGTGTGCTGGCCCTGCGCTGCCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS CCA 90 bp ACACCTGGCACAAACGGAGCTGGGGCCCAGGAGAGCTTGCTGCTGTaGCTGAGAATTCTTCCAGGCAGCGCAGGGCCAGCACACCGTTCA +
Preference number: 5 (lower is better)
Translates to: TPGTNGAGAQESLLL*LRILPGSAGPAHRS
Trigger: TGAACGGTGTGCTGGCCCTGCGCTGCCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS-3UTR CAA 90 bp GGGGGTGGGGTAGGGAGGTGTGGTGATGCTCCTGGAGCCAGGGAAAGTTTAAGGCCCATCCACACCTGCTaGTGCTCCATCCTGTCCTGG +
Preference number: 5 (lower is better)
Translates to: GGGVGRCGDAPGARESLRPIHTC*CSILSW
Trigger: CCAGGACAGGATGGAGCACAAGCAGGTGTGGATGGG...CCTTAAACTTTCCCTGGCTCCAGGAGCATCACCACACCTCCCTACCCCACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS GCA 90 bp TTGTGCTCCATCCTGTCCTGGCCGAGGATGAACCTCATAATGGGCTaGAATAGCTCGGCGAGGCCGCGCCTTCCGGCCTTTAGGAGCACT +
Preference number: 5 (lower is better)
Translates to: LCSILSWPRMNLIMG*NSSARPRLPAFRST
Trigger: AGTGCTCCTAAAGGCCGGAAGGCGCGGCCTCGCCGAGCTATTGCAGCCCATTATGAGGTTCATCCTCGGCCAGGACAGGATGGAGCACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000181261.2
ENSMUST00000181810.8
CDS-3UTR CAA 90 bp GGGGGTGGGGTAGGGAGGTGTGGTGATGCTCCTGGAGCCAGGGAAAGTTTAAGGAGAGGGCTGGAGCTGTaGATTTTGGTCTCTTCCCAG +
Preference number: 5 (lower is better)
Translates to: GGGVGRCGDAPGARESLRRGLEL*ILVSSQ
Trigger: CTGGGAAGAGACCAAAATCAACAGCTCCAGCCCTCT...CCTTAAACTTTCCCTGGCTCCAGGAGCATCACCACACCTCCCTACCCCACCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS GCA 90 bp TTTGGTCTCTTCCCAGCCACTCACTGTCCCATCCACACCTGCTTGTaGTCCATCCTGTCCTGGCCGAGGATGAACCTCATAATGGGCTGC +
Preference number: 5 (lower is better)
Translates to: FGLFPATHCPIHTCL*SILSWPRMNLIMGC
Trigger: GCAGCCCATTATGAGGTTCATCCTCGGCCAGGACAGGATGGAGCACAAGCAGGTGTGGATGGGACAGTGAGTGGCTGGGAAGAGACCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS GCA 90 bp GTTGATTTTGGTCTCTTCCCAGCCACTCACTGTCCCATCCACACCTaGTTGTGCTCCATCCTGTCCTGGCCGAGGATGAACCTCATAATG +
Preference number: 5 (lower is better)
Translates to: VDFGLFPATHCPIHT*LCSILSWPRMNLIM
Trigger: CATTATGAGGTTCATCCTCGGCCAGGACAGGATGGAGCACAAGCAGGTGTGGATGGGACAGTGAGTGGCTGGGAAGAGACCAAAATCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS-3UTR CAA 90 bp CCCCTTCCCACAATCTTCAGTTACTCTGAACCCCAAAGAAGAGAAATCATGATTGGGGCCCAGGAGAGCTaGCTGCTGTGGCTGAGAATT +
Preference number: 5 (lower is better)
Translates to: PLPTIFSYSEPQRREIMIGAQES*LLWLRI
Trigger: AATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCC...AATCATGATTTCTCTTCTTTGGGGTTCAGAGTAACTGAAGATTGTGGGAAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS-3UTR CAA 90 bp AGCCTAAATCCCCTTCCCACAATCTTCAGTTACTCTGAACCCCAAAGAAGAGAACTGGAGCTGTTGATTTaGGTCTCTTCCCAGCCACTC +
Preference number: 5 (lower is better)
Translates to: SLNPLPTIFSYSEPQRRELELLI*VSSQPL
Trigger: GAGTGGCTGGGAAGAGACCAAAATCAACAGCTCCAG...TTCTCTTCTTTGGGGTTCAGAGTAACTGAAGATTGTGGGAAGGGGATTTAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS CAA 90 bp ACAGCCCAGACACCTGGCACAAACGGAGCTGGGGCCCAGGAGAGCTaGCTGCTGTGGCTGAGAATTCTTCCAGGCAGCGCAGGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: TAQTPGTNGAGAQES*LLWLRILPGSAGPA
Trigger: TGCTGGCCCTGCGCTGCCTGGAAGAATTCTCAGCCACAGCAGCAAGCTCTCCTGGGCCCCAGCTCCGTTTGTGCCAGGTGTCTGGGCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8
CDS GCA 72 bp ATCCTGTCCTGGCCGAGGATGAACCTCATAATGGGCTaGAATAGCTCGGCGAGGCCGCGCCTTCCGGCCTTT +
Preference number: 6 (lower is better)
Translates to: ILSWPRMNLIMG*NSSARPRLPAF
Trigger: AAAGGCCGGAAGGCGCGGCCTCGCCGAGCTATTGCAGCCCATTATGAGGTTCATCCTCGGCCAGGACAGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000181261.2
ENSMUST00000181810.8
CDS CAA 90 bp GATTTTGGTCTCTTCCCAGCCACTCACTGTCCCATCCACACCTGCTaGTGCTCCATCCTGTCCTGGCCGAGGATGAACCTCATAATGGGC +
Preference number: 6 (lower is better)
Translates to: DFGLFPATHCPIHTC*CSILSWPRMNLIMG
Trigger: GCCCATTATGAGGTTCATCCTCGGCCAGGACAGGATGGAGCACAAGCAGGTGTGGATGGGACAGTGAGTGGCTGGGAAGAGACCAAAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181810.8