Pregenerated sensors for TNFSF11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022015Ensembl transcript IDs: ENSMUST00000022592.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGAATAAAGAAATAAACTACATGTGGTCACCAGAAACAGTATTCTaGCCCCTTAGCTACGAGTACCTTCAGGGGAATTACAAAGTGCAC | + |
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Preference number: 1 (lower is better) Translates to: KNKEINYMWSPETVF*PLSYEYLQGNYKVH Trigger: GTGCACTTTGTAATTCCCCTGAAGGTACTCGTAGCTAAGGGGGCAGAATACTGTTTCTGGTGACCACATGTAGTTTATTTCTTTATTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| 3UTR-3UTR TCA 90 bp | TTCATAAGCATCGGAATACCTCTCCCAATCTGGTTCAATTCTAGGAAATCATTACAAGAGAGAGGGCTGTaGGTTTCATACACCGTGGGC | + |
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Preference number: 2 (lower is better) Translates to: FISIGIPLPIWFNSRKSLQERGL*VSYTVG Trigger: GCCCACGGTGTATGAAACTCACAGCCCTCTCTCTTG...TAATGATTTCCTAGAATTGAACCAGATTGGGAGAGGTATTCCGATGCTTATGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| 3UTR CCA 72 bp | CTTAACCCTTCACACTATCATTTCTTTGCAATGACATaGCATCCTCTTAATTTCAAGGTTCTCAGTGGCACA | + |
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Preference number: 3 (lower is better) Translates to: LNPSHYHFFAMT*HPLNFKVLSGT Trigger: TGTGCCACTGAGAACCTTGAAATTAAGAGGATGCCATGTCATTGCAAAGAAATGATAGTGTGAAGGGTTAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CCA 90 bp | TCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGAGAGGGCTGGGAGGGCCAGGAACATaGAGCGGGAGGCGGCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: SPMDFTYTQPVQAQERGLGGPGT*SGRRRV Trigger: CACCCGCCGCCTCCCGCTCCATGTTCCTGGCCCTCC...CAGCCCTCTCTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TTCATAAGCATCGGAATACCTCTCCCAATCTGGTTCAATTCTAGGAAATCATTAGGACGCCGGGGCCGCTaGCCATCTCCTCCGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FISIGIPLPIWFNSRKSLGRRGR*PSPPSC Trigger: GCAGCTCGGAGGAGATGGGCAGCGGCCCCGGCGTCC...TAATGATTTCCTAGAATTGAACCAGATTGGGAGAGGTATTCCGATGCTTATGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CCA 90 bp | TCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGAGAGGGCTGAGGTGTGCAAATGGCTaGGCCTCAGGCTTGCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: SPMDFTYTQPVQAQERGLRCANG*ASGLPR Trigger: GCGAGGCAAGCCTGAGGCCCAGCCATTTGCACACCT...CAGCCCTCTCTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGAGAGGGCTGACAGGAACAGAGCGATaGTGCAGACCACCTGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: SPMDFTYTQPVQAQERGLTGTER*CRPPGP Trigger: TGGGCCAGGTGGTCTGCAGCATCGCTCTGTTCCTGT...CAGCCCTCTCTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR TCA 90 bp | AATCTAACATCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGCATAGCTGGAGCTCCTaGGAAGCGCTGTGGCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: NLTSPMDFTYTQPVQAQEHSWSS*EALWPH Trigger: GTGGGGCCACAGCGCTTCTCAGGAGCTCCAGCTATG...CTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGATGTTAGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGAGAGGGCTGATTGATGGTGAGGTGTaGAAATGGCTGGGCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SPMDFTYTQPVQAQERGLIDGEV*KWLGLR Trigger: CCTGAGGCCCAGCCATTTGCACACCTCACCATCAAT...CAGCCCTCTCTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TATCATTTCTTTGCAATGACATGGCATCCTCTTAATTTCAAGGTTCTCAGTGGCCCATCTCCTCCGAGCTaGGCAGGTACTTGCCGTAGT | + |
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Preference number: 4 (lower is better) Translates to: YHFFAMTWHPLNFKVLSGPSPPS*AGTCRS Trigger: ACTACGGCAAGTACCTGCGCAGCTCGGAGGAGATGG...GCCACTGAGAACCTTGAAATTAAGAGGATGCCATGTCATTGCAAAGAAATGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CCA 90 bp | AATCTAACATCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGTCAGGCTTGCCTCGCTaGGCCACATCCAACCATGAG | + |
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Preference number: 4 (lower is better) Translates to: NLTSPMDFTYTQPVQAQESGLPR*ATSNHE Trigger: CTCATGGTTGGATGTGGCCCAGCGAGGCAAGCCTGA...CTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGATGTTAGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CCA 90 bp | AATCTAACATCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGGCCCAGCCTCGATCGTaGTACCAAGAGGACAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: NLTSPMDFTYTQPVQAQEAQPRS*YQEDRV Trigger: CACTCTGTCCTCTTGGTACCACGATCGAGGCTGGGC...CTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGATGTTAGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR TCA 90 bp | TCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGAGAGGGCTGGAAGGGTTGGACACCTaGATGCTAATTTCTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: SPMDFTYTQPVQAQERGLEGLDT*MLISSP Trigger: TGGTGAAGAAATTAGCATTCAGGTGTCCAACCCTTC...CAGCCCTCTCTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TACCTCTCCCAATCTGGTTCAATTCTAGGAAATCATTACAAAATTGTAAAACCGGGAACAGAGCGATGCTaGAGACCACCTGGCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: YLSQSGSILGNHYKIVKPGTERC*RPPGPV Trigger: GACTGGGCCAGGTGGTCTGCAGCATCGCTCTGTTCC...CGGTTTTACAATTTTGTAATGATTTCCTAGAATTGAACCAGATTGGGAGAGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGAGAGGGCTGAGTGGAATTCAGAATTaGCCGACCAGTTTTTCGTGC | + |
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Preference number: 4 (lower is better) Translates to: SPMDFTYTQPVQAQERGLSGIQN*PTSFSC Trigger: GCACGAAAAACTGGTCGGGCAATTCTGAATTCCACT...CAGCCCTCTCTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CCA 90 bp | CAGGGGTTAGACCCAGAGACTGTGACCCCCTTCCATAGCTCACGTGTAAGTTTTCAGGTTATGAGAACTTaGGATTTTGATGCTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: QGLDPETVTPFHSSRVSFQVMRT*DFDAGF Trigger: AAAACCAGCATCAAAATCCCAAGTTCTCATAACCTG...AAAACTTACACGTGAGCTATGGAAGGGGGTCACAGTCTCTGGGTCTAACCCCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR TCA 90 bp | AATCTAACATCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGACCAAGAGGACAGAGTaGCTTTATGGGAACCCGATG | + |
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Preference number: 4 (lower is better) Translates to: NLTSPMDFTYTQPVQAQETKRTE*LYGNPM Trigger: CATCGGGTTCCCATAAAGTCACTCTGTCCTCTTGGT...CTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGATGTTAGATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR TCA 90 bp | TCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGAGAGGGCTGCCTTTCATCAGGTTATaGGAACTTGGGATTTTGATG | + |
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Preference number: 4 (lower is better) Translates to: SPMDFTYTQPVQAQERGLPFIRL*ELGILM Trigger: CATCAAAATCCCAAGTTCTCATAACCTGATGAAAGG...CAGCCCTCTCTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR TCA 90 bp | CATGAATCTAACATCACCTATGGACTTTACATATACACAACCTGTACAGGCTCACTATGTCCTGAACTTTaGAAGCCCCAAAGTACGTCG | + |
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Preference number: 4 (lower is better) Translates to: HESNITYGLYIYTTCTGSLCPEL*KPQSTS Trigger: CGACGTACTTTGGGGCTTTCAAAGTTCAGGACATAG...TGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGATGTTAGATTCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TTCATAAGCATCGGAATACCTCTCCCAATCTGGTTCAATTCTAGGAAATCATTACCGACCAGTTTTTCGTaGTCCCTCCTTTCATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: FISIGIPLPIWFNSRKSLPTSFS*SLLSSG Trigger: ACCTGATGAAAGGAGGGAGCACGAAAAACTGGTCGG...TAATGATTTCCTAGAATTGAACCAGATTGGGAGAGGTATTCCGATGCTTATGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR TCA 90 bp | TATCATTTCTTTGCAATGACATGGCATCCTCTTAATTTCAAGGTTCTCAGTGGCCTTCCCGATGTTTCATaGTGCCGAAAGCAAATGTTG | + |
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Preference number: 4 (lower is better) Translates to: YHFFAMTWHPLNFKVLSGLPDVS*CRKQML Trigger: CAACATTTGCTTTCGGCATCATGAAACATCGGGAAG...GCCACTGAGAACCTTGAAATTAAGAGGATGCCATGTCATTGCAAAGAAATGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TTCATAAGCATCGGAATACCTCTCCCAATCTGGTTCAATTCTAGGAAATCATTACGAGTCCTGCAAATCTaGGTTTTCATGGAGTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: FISIGIPLPIWFNSRKSLRVLQI*VFMESQ Trigger: CTGAGACTCCATGAAAACGCAGATTTGCAGGACTCG...TAATGATTTCCTAGAATTGAACCAGATTGGGAGAGGTATTCCGATGCTTATGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CCA 90 bp | TATCATTTCTTTGCAATGACATGGCATCCTCTTAATTTCAAGGTTCTCAGTGGCGCCGAAAGCAAATGTTaGCGTACAGGTAATAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: YHFFAMTWHPLNFKVLSGAESKC*RTGNRS Trigger: GCTTCTATTACCTGTACGCCAACATTTGCTTTCGGC...GCCACTGAGAACCTTGAAATTAAGAGGATGCCATGTCATTGCAAAGAAATGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR TCA 90 bp | TATCATTTCTTTGCAATGACATGGCATCCTCTTAATTTCAAGGTTCTCAGTGGCGTGAGTGCTGTCTTCTaGTATTCTGTTAGGATCCAT | + |
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Preference number: 4 (lower is better) Translates to: YHFFAMTWHPLNFKVLSGVSAVF*YSVRIH Trigger: ATGGATCCTAACAGAATATCAGAAGACAGCACTCAC...GCCACTGAGAACCTTGAAATTAAGAGGATGCCATGTCATTGCAAAGAAATGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR TCA 90 bp | TACCTCTCCCAATCTGGTTCAATTCTAGGAAATCATTACAAAATTGTAAAACCGCACCAGCTCGGAGCTTaGAAAATCCCCCAACATTTA | + |
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Preference number: 4 (lower is better) Translates to: YLSQSGSILGNHYKIVKPHQLGA*KIPQHL Trigger: TAAATGTTGGGGGATTTTTCAAGCTCCGAGCTGGTG...CGGTTTTACAATTTTGTAATGATTTCCTAGAATTGAACCAGATTGGGAGAGGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CCA 90 bp | AATCTAACATCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAAGAGATCCCCCAACATTTATaGAATAAAAGTGGAATTCAG | + |
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Preference number: 4 (lower is better) Translates to: NLTSPMDFTYTQPVQAQEIPQHL*NKSGIQ Trigger: CTGAATTCCACTTTTATTCCATAAATGTTGGGGGAT...CTCTTGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGATGTTAGATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR GCA 90 bp | TTCATAAGCATCGGAATACCTCTCCCAATCTGGTTCAATTCTAGGAAATCATTATATAAAAGCAGTGAGTaGTGTCTTCTGATATTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FISIGIPLPIWFNSRKSLYKSSE*CLLIFC Trigger: ACAGAATATCAGAAGACAGCACTCACTGCTTTTATA...TAATGATTTCCTAGAATTGAACCAGATTGGGAGAGGTATTCCGATGCTTATGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 90 bp | CGCCGGAGCCGGTGCAGAAGGCGCGGGGTGCAGCGGACCCTCGTGTaGGACGCCGGGGCCGCTGCCCATCTCCTCCGAGCTGCGCAGGTA | + |
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Preference number: 5 (lower is better) Translates to: RRSRCRRRGVQRTLV*DAGAAAHLLRAAQV Trigger: TACCTGCGCAGCTCGGAGGAGATGGGCAGCGGCCCCGGCGTCCCACACGAGGGTCCGCTGCACCCCGCGCCTTCTGCACCGGCTCCGGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CAA 90 bp | CAGGGGTTAGACCCAGAGACTGTGACCCCCTTCCATAGCTCACGTGTAAGTTTTGGCTGGGCCTCAGGCTaGCCTCGCTGGGCCACATCC | + |
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Preference number: 5 (lower is better) Translates to: QGLDPETVTPFHSSRVSFGWASG*PRWATS Trigger: GGATGTGGCCCAGCGAGGCAAGCCTGAGGCCCAGCC...AAAACTTACACGTGAGCTATGGAAGGGGGTCACAGTCTCTGGGTCTAACCCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 90 bp | TTGATGGTGAGGTGTGCAAATGGCTGGGCCTCAGGCTTGCCTCGCTaGGCCACATCCAACCATGAGCCTTCCATCATAGCTGGAGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LMVRCANGWASGLPR*ATSNHEPSIIAGAP Trigger: AGGAGCTCCAGCTATGATGGAAGGCTCATGGTTGGATGTGGCCCAGCGAGGCAAGCCTGAGGCCCAGCCATTTGCACACCTCACCATCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS GCA 90 bp | GCAGTTCCTTCTGCACGGCCCCCTGAAAGGCTTGTTTCATCCTCCTaGAGGAGTCAGGTAGTGTGTCTTCACTCTCCAGAGTCGAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: AVPSARPPERLVSSS*RSQVVCLHSPESSP Trigger: AGGACTCGACTCTGGAGAGTGAAGACACACTACCTGACTCCTGCAGGAGGATGAAACAAGCCTTTCAGGGGGCCGTGCAGAAGGAACTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 90 bp | TTGGCCCAGCCTCGATCGTGGTACCAAGAGGACAGAGTGACTTTATaGGAACCCGATGGGATGCTGGCAGCATTGATGGTGAGGTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: LAQPRSWYQEDRVTL*EPDGMLAALMVRCA Trigger: TGCACACCTCACCATCAATGCTGCCAGCATCCCATCGGGTTCCCATAAAGTCACTCTGTCCTCTTGGTACCACGATCGAGGCTGGGCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 90 bp | TCGATCGTGGTACCAAGAGGACAGAGTGACTTTATGGGAACCCGATaGGATGCTGGCAGCATTGATGGTGAGGTGTGCAAATGGCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: SIVVPRGQSDFMGTR*DAGSIDGEVCKWLG Trigger: GCCCAGCCATTTGCACACCTCACCATCAATGCTGCCAGCATCCCATCGGGTTCCCATAAAGTCACTCTGTCCTCTTGGTACCACGATCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 90 bp | CCGTTGCTTAACGTCATGTTAGAGATCTTGGCCCAGCCTCGATCGTaGTACCAAGAGGACAGAGTGACTTTATGGGAACCCGATGGGATG | + |
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Preference number: 5 (lower is better) Translates to: PLLNVMLEILAQPRS*YQEDRVTLWEPDGM Trigger: CATCCCATCGGGTTCCCATAAAGTCACTCTGTCCTCTTGGTACCACGATCGAGGCTGGGCCAAGATCTCTAACATGACGTTAAGCAACGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CAA 90 bp | CAGGGGTTAGACCCAGAGACTGTGACCCCCTTCCATAGCTCACGTGTAAGTTTTAAAGTACGTCGCATCTaGATCCGGATCCAGCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: QGLDPETVTPFHSSRVSFKVRRI*IRIQQG Trigger: TCCCTGCTGGATCCGGATCAAGATGCGACGTACTTT...AAAACTTACACGTGAGCTATGGAAGGGGGTCACAGTCTCTGGGTCTAACCCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CAA 90 bp | CATGAATCTAACATCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAGGGATGCTGGCAGCATaGATGGTGAGGTGTGCAAAT | + |
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Preference number: 5 (lower is better) Translates to: HESNITYGLYIYTTCTGSGMLAA*MVRCAN Trigger: ATTTGCACACCTCACCATCAATGCTGCCAGCATCCC...TGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGATGTTAGATTCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CAA 90 bp | CATGAATCTAACATCACCTATGGACTTTACATATACACAACCTGTACAGGCTCAACCCTTAGTTTTCCGTaGCTTAACGTCATGTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: HESNITYGLYIYTTCTGSTLSFP*LNVMLE Trigger: CTCTAACATGACGTTAAGCAACGGAAAACTAAGGGT...TGAGCCTGTACAGGTTGTGTATATGTAAAGTCCATAGGTGATGTTAGATTCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS-3UTR CAA 90 bp | TACCTCTCCCAATCTGGTTCAATTCTAGGAAATCATTACAAAATTGTAAAACCGTCACCAGCTCGGAGCTaGAAAAATCCCCCAACATTT | + |
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Preference number: 5 (lower is better) Translates to: YLSQSGSILGNHYKIVKPSPARS*KNPPTF Trigger: AAATGTTGGGGGATTTTTCAAGCTCCGAGCTGGTGA...CGGTTTTACAATTTTGTAATGATTTCCTAGAATTGAACCAGATTGGGAGAGGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 72 bp | CGGTGCAGAAGGCGCGGGGTGCAGCGGACCCTCGTGTaGGACGCCGGGGCCGCTGCCCATCTCCTCCGAGCT | + |
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Preference number: 6 (lower is better) Translates to: RCRRRGVQRTLV*DAGAAAHLLRA Trigger: AGCTCGGAGGAGATGGGCAGCGGCCCCGGCGTCCCACACGAGGGTCCGCTGCACCCCGCGCCTTCTGCACCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS GCA 72 bp | GTGGGACGCCGGGGCCGCTGCCCATCTCCTCCGAGCTaGGCAGGTACTTGCCGTAGTCTCGGCTGGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: VGRRGRCPSPPS*AGTCRSLGWPG Trigger: GCCGGGCCAGCCGAGACTACGGCAAGTACCTGCGCAGCTCGGAGGAGATGGGCAGCGGCCCCGGCGTCCCAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS GCA 72 bp | GGTGCAGCGGACCCTCGTGTGGGACGCCGGGGCCGCTaGCCATCTCCTCCGAGCTGCGCAGGTACTTGCCGT | + |
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Preference number: 6 (lower is better) Translates to: GAADPRVGRRGR*PSPPSCAGTCR Trigger: ACGGCAAGTACCTGCGCAGCTCGGAGGAGATGGGCAGCGGCCCCGGCGTCCCACACGAGGGTCCGCTGCACC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS GCA 72 bp | ACCCGATGGGATGCTGGCAGCATTGATGGTGAGGTGTaGAAATGGCTGGGCCTCAGGCTTGCCTCGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: TRWDAGSIDGEV*KWLGLRLASLG Trigger: GCCCAGCGAGGCAAGCCTGAGGCCCAGCCATTTGCACACCTCACCATCAATGCTGCCAGCATCCCATCGGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 72 bp | ATGCTGGCAGCATTGATGGTGAGGTGTGCAAATGGCTaGGCCTCAGGCTTGCCTCGCTGGGCCACATCCAAC | + |
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Preference number: 6 (lower is better) Translates to: MLAALMVRCANG*ASGLPRWATSN Trigger: GTTGGATGTGGCCCAGCGAGGCAAGCCTGAGGCCCAGCCATTTGCACACCTCACCATCAATGCTGCCAGCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CAA 90 bp | GAGGACAGAGTGACTTTATGGGAACCCGATGGGATGCTGGCAGCATaGATGGTGAGGTGTGCAAATGGCTGGGCCTCAGGCTTGCCTCGC | + |
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Preference number: 6 (lower is better) Translates to: EDRVTLWEPDGMLAA*MVRCANGWASGLPR Trigger: GCGAGGCAAGCCTGAGGCCCAGCCATTTGCACACCTCACCATCAATGCTGCCAGCATCCCATCGGGTTCCCATAAAGTCACTCTGTCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 72 bp | AGGTGTGCAAATGGCTGGGCCTCAGGCTTGCCTCGCTaGGCCACATCCAACCATGAGCCTTCCATCATAGCT | + |
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Preference number: 6 (lower is better) Translates to: RCANGWASGLPR*ATSNHEPSIIA Trigger: AGCTATGATGGAAGGCTCATGGTTGGATGTGGCCCAGCGAGGCAAGCCTGAGGCCCAGCCATTTGCACACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS TCA 72 bp | TGGCCCAGCCTCGATCGTGGTACCAAGAGGACAGAGTaGCTTTATGGGAACCCGATGGGATGCTGGCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: WPSLDRGTKRTE*LYGNPMGCWQH Trigger: ATGCTGCCAGCATCCCATCGGGTTCCCATAAAGTCACTCTGTCCTCTTGGTACCACGATCGAGGCTGGGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS GCA 72 bp | TCTGCACGGCCCCCTGAAAGGCTTGTTTCATCCTCCTaGAGGAGTCAGGTAGTGTGTCTTCACTCTCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SARPPERLVSSS*RSQVVCLHSPE Trigger: CTCTGGAGAGTGAAGACACACTACCTGACTCCTGCAGGAGGATGAAACAAGCCTTTCAGGGGGCCGTGCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CAA 72 bp | GTCCTGAACTTTGAAAGCCCCAAAGTACGTCGCATCTaGATCCGGATCCAGCAGGGAAGGGTTGGACACCTG | + |
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Preference number: 6 (lower is better) Translates to: VLNFESPKVRRI*IRIQQGRVGHL Trigger: CAGGTGTCCAACCCTTCCCTGCTGGATCCGGATCAAGATGCGACGTACTTTGGGGCTTTCAAAGTTCAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 72 bp | GTACCAAGAGGACAGAGTGACTTTATGGGAACCCGATaGGATGCTGGCAGCATTGATGGTGAGGTGTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: VPRGQSDFMGTR*DAGSIDGEVCK Trigger: TTTGCACACCTCACCATCAATGCTGCCAGCATCCCATCGGGTTCCCATAAAGTCACTCTGTCCTCTTGGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 72 bp | AACGTCATGTTAGAGATCTTGGCCCAGCCTCGATCGTaGTACCAAGAGGACAGAGTGACTTTATGGGAACCC | + |
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Preference number: 6 (lower is better) Translates to: NVMLEILAQPRS*YQEDRVTLWEP Trigger: GGGTTCCCATAAAGTCACTCTGTCCTCTTGGTACCACGATCGAGGCTGGGCCAAGATCTCTAACATGACGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CAA 90 bp | TCAGTCTATGTCCTGAACTTTGAAAGCCCCAAAGTACGTCGCATCTaGATCCGGATCCAGCAGGGAAGGGTTGGACACCTGAATGCTAAT | + |
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Preference number: 6 (lower is better) Translates to: SVYVLNFESPKVRRI*IRIQQGRVGHLNAN Trigger: ATTAGCATTCAGGTGTCCAACCCTTCCCTGCTGGATCCGGATCAAGATGCGACGTACTTTGGGGCTTTCAAAGTTCAGGACATAGACTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS GCA 72 bp | TCAGGTAGTGTGTCTTCACTCTCCAGAGTCGAGTCCTaGAAATCTGCGTTTTCATGGAGTCTCAGGATTCTA | + |
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Preference number: 6 (lower is better) Translates to: SGSVSSLSRVES*KSAFSWSLRIL Trigger: TAGAATCCTGAGACTCCATGAAAACGCAGATTTGCAGGACTCGACTCTGGAGAGTGAAGACACACTACCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS GCA 72 bp | TGTGTCTTCACTCTCCAGAGTCGAGTCCTGCAAATCTaGGTTTTCATGGAGTCTCAGGATTCTATAAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: CVFTLQSRVLQI*VFMESQDSIKA Trigger: TGCTTTTATAGAATCCTGAGACTCCATGAAAACGCAGATTTGCAGGACTCGACTCTGGAGAGTGAAGACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS GCA 72 bp | AAAAGTGGAATTCAGAATTGCCCGACCAGTTTTTCGTaGTCCCTCCTTTCATCAGGTTATGAGAACTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: KSGIQNCPTSFS*SLLSSGYENLG Trigger: TCCCAAGTTCTCATAACCTGATGAAAGGAGGGAGCACGAAAAACTGGTCGGGCAATTCTGAATTCCACTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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| CDS CCA 72 bp | TTTCGTGCTCCCTCCTTTCATCAGGTTATGAGAACTTaGGATTTTGATGCTGGTTTTAACGACATACACCAT | + |
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Preference number: 6 (lower is better) Translates to: FRAPSFHQVMRT*DFDAGFNDIHH Trigger: ATGGTGTATGTCGTTAAAACCAGCATCAAAATCCCAAGTTCTCATAACCTGATGAAAGGAGGGAGCACGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022592.8 |
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