Pregenerated sensors for TNFSF10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039304Ensembl transcript IDs: ENSMUST00000046383.12, ENSMUST00000174840.2
Found 125 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGACCTCCTCCAACTCTACACCTGGTACCCAGGGCCTGCAGCAGTaGCAGGATCTGAGCTCCAGCAGGGTGGGGCAGCCCTGTGGTATG | + |
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Preference number: 1 (lower is better) Translates to: KTSSNSTPGTQGLQQ*QDLSSSRVGQPCGM Trigger: CATACCACAGGGCTGCCCCACCCTGCTGGAGCTCAGATCCTGCCACTGCTGCAGGCCCTGGGTACCAGGTGTAGAGTTGGAGGAGGTCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | GAGCTGGCCTCTGCCCTGGGATCATTGTCCCTGTGCTTGCCCAGGTaGCAGGCTCGTCTTAGTCTTCAAGTCAGATGGCTTGTTGGGCTA | + |
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Preference number: 1 (lower is better) Translates to: ELASALGSLSLCLPR*QARLSLQVRWLVGL Trigger: TAGCCCAACAAGCCATCTGACTTGAAGACTAAGACGAGCCTGCCACCTGGGCAAGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR GCA 90 bp | AAACAGCAGAGCTGGCCTCTGCCCTGGGATCATTGTCCCTGTGCTTaGCCAGGTGGCAGGCTCGTCTTAGTCTTCAAGTCAGATGGCTTG | + |
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Preference number: 1 (lower is better) Translates to: KQQSWPLPWDHCPCA*PGGRLVLVFKSDGL Trigger: CAAGCCATCTGACTTGAAGACTAAGACGAGCCTGCCACCTGGGCAAGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCTCTGCTGTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR GCA 90 bp | CTCAAAACAGCAGAGCTGGCCTCTGCCCTGGGATCATTGTCCCTGTaGTTGCCCAGGTGGCAGGCTCGTCTTAGTCTTCAAGTCAGATGG | + |
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Preference number: 1 (lower is better) Translates to: LKTAELASALGSLSL*LPRWQARLSLQVRW Trigger: CCATCTGACTTGAAGACTAAGACGAGCCTGCCACCTGGGCAAGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCTCTGCTGTTTTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | GCAGGGTGGGGCAGCCCTGTGGTATGGCTCTGCGGGCCTCTTTCTTaGGCTGCCCTCATTCATTGCCTGGAGATTTCATACATTCTTTGG | + |
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Preference number: 1 (lower is better) Translates to: AGWGSPVVWLCGPLS*AALIHCLEISYILW Trigger: CCAAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCCCGCAGAGCCATACCACAGGGCTGCCCCACCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR GCA 90 bp | AGTGTCTGTGGCTGGACTGTTGGCCTGTCGCTGCTGAGTTCCAGCTaGCTTTCTGTCACATCTGTCCTGAGGTTTCTACAGCCAGGCCAT | + |
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Preference number: 1 (lower is better) Translates to: SVCGWTVGLSLLSSS*LSVTSVLRFLQPGH Trigger: ATGGCCTGGCTGTAGAAACCTCAGGACAGATGTGACAGAAAGGCAGCTGGAACTCAGCAGCGACAGGCCAACAGTCCAGCCACAGACACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR GCA 90 bp | GTGGGGCAGCCCTGTGGTATGGCTCTGCGGGCCTCTTTCTTGGGCTaGCCTCATTCATTGCCTGGAGATTTCATACATTCTTTGGGCAAG | + |
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Preference number: 1 (lower is better) Translates to: VGQPCGMALRASFLG*PHSLPGDFIHSLGK Trigger: CTTGCCCAAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCCCGCAGAGCCATACCACAGGGCTGCCCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | CTTTTGCCTAGACACTTCTCAAAACAGCAGAGCTGGCCTCTGCCCTaGGATCATTGTCCCTGTGCTTGCCCAGGTGGCAGGCTCGTCTTA | + |
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Preference number: 1 (lower is better) Translates to: LLPRHFSKQQSWPLP*DHCPCACPGGRLVL Trigger: TAAGACGAGCCTGCCACCTGGGCAAGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCTCTGCTGTTTTGAGAAGTGTCTAGGCAAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | GCAAGTCTCTCGATGAAACACCGAAAGTGTCTGTGGCTGGACTGTTaGCCTGTCGCTGCTGAGTTCCAGCTGCCTTTCTGTCACATCTGT | + |
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Preference number: 1 (lower is better) Translates to: ASLSMKHRKCLWLDC*PVAAEFQLPFCHIC Trigger: ACAGATGTGACAGAAAGGCAGCTGGAACTCAGCAGCGACAGGCCAACAGTCCAGCCACAGACACTTTCGGTGTTTCATCGAGAGACTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR GCA 90 bp | AGACACTGGGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACCGACTaGTCTTCTGAAGTTTCTGAGTTCAAATCCCAGCAACCACATGGT | + |
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Preference number: 1 (lower is better) Translates to: RHWGWRGGSVVKSTD*SSEVSEFKSQQPHG Trigger: ACCATGTGGTTGCTGGGATTTGAACTCAGAAACTTCAGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCAGTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | AAAGAAAGAAAGCTTTTGCCTAGACACTTCTCAAAACAGCAGAGCTaGCCTCTGCCCTGGGATCATTGTCCCTGTGCTTGCCCAGGTGGC | + |
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Preference number: 1 (lower is better) Translates to: KERKLLPRHFSKQQS*PLPWDHCPCACPGG Trigger: GCCACCTGGGCAAGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCTCTGCTGTTTTGAGAAGTGTCTAGGCAAAAGCTTTCTTTCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR GCA 90 bp | TGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTaGTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACA | + |
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Preference number: 1 (lower is better) Translates to: CKKPSWPHVKRLSGH*WLPVMGETLSPRKT Trigger: TGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | TATGGCTCTGCGGGCCTCTTTCTTGGGCTGCCCTCATTCATTGCCTaGAGATTTCATACATTCTTTGGGCAAGGTTCCACTGATGATGGG | + |
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Preference number: 1 (lower is better) Translates to: YGSAGLFLGLPSFIA*RFHTFFGQGSTDDG Trigger: CCCATCATCAGTGGAACCTTGCCCAAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCCCGCAGAGCCATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | CGGCCTGGGAAACATGATAAAACTAGCAAACAAGCAAAGGAGGACTaGGGCCATATCAAGGAGGTAGGCACCAAAGACCTAGACCCACAG | + |
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Preference number: 1 (lower is better) Translates to: RPGKHDKTSKQAKED*GHIKEVGTKDLDPQ Trigger: CTGTGGGTCTAGGTCTTTGGTGCCTACCTCCTTGATATGGCCCCAGTCCTCCTTTGCTTGTTTGCTAGTTTTATCATGTTTCCCAGGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | AAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTaGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACAGTA | + |
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Preference number: 1 (lower is better) Translates to: KKPSWPHVKRLSGHC*LPVMGETLSPRKTV Trigger: TACTGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | GGCACCAACATCTTAAAAAGAACAAGTGTTCAACATCTTGGTAGGTaGAGTGGACAGACAGATGGAAGAGCCAGAGGACTGGGTGACAGT | + |
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Preference number: 1 (lower is better) Translates to: GTNILKRTSVQHLGR*SGQTDGRARGLGDS Trigger: ACTGTCACCCAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTCCACCTACCAAGATGTTGAACACTTGTTCTTTTTAAGATGTTGGTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | GAATGTATACGTTCAACACAAACATTAGAAATCAGACACTGGGGCTaGAGAGGTGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCTGAA | + |
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Preference number: 1 (lower is better) Translates to: ECIRSTQTLEIRHWG*RGGSVVKSTDCSSE Trigger: TTCAGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCAGTGTCTGATTTCTAATGTTTGTGTTGAACGTATACATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CCA 90 bp | GACAAAGAATGTATACGTTCAACACAAACATTAGAAATCAGACACTaGGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACCGACTGCTCT | + |
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Preference number: 1 (lower is better) Translates to: DKECIRSTQTLEIRH*GWRGGSVVKSTDCS Trigger: AGAGCAGTCGGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCAGTGTCTGATTTCTAATGTTTGTGTTGAACGTATACATTCTTTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR TCA 90 bp | AGACACCATTTCGCTTGCCAGCTTGGCAGACAAGATGAAGTGCTGTaGATTTTGCCATCAGTGATGACTTGGGGACCAGGAATTAGAAAA | + |
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Preference number: 1 (lower is better) Translates to: RHHFACQLGRQDEVL*ILPSVMTWGPGIRK Trigger: TTTTCTAATTCCTGGTCCCCAAGTCATCACTGATGGCAAAATTCACAGCACTTCATCTTGTCTGCCAAGCTGGCAAGCGAAATGGTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR TCA 90 bp | AGTTTTCAGCCCTGCCAAAGGTCAAATTCAGGTTGTCAAGATTTTTaGCAAGTGCCTTTCCCTTCCATCTTGAGCTTTCAAATGTTCTCC | + |
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Preference number: 1 (lower is better) Translates to: SFQPCQRSNSGCQDF*QVPFPSILSFQMFS Trigger: GGAGAACATTTGAAAGCTCAAGATGGAAGGGAAAGGCACTTGTCAAAAATCTTGACAACCTGAATTTGACCTTTGGCAGGGCTGAAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR GCA 90 bp | GTATGGATATATTTTGTCAGAATGTATGTCTGTGTATCACATACATaGATTGCAAGCAAAGGGCAGAAAGTCAGACCCCTTGGAACTGAA | + |
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Preference number: 1 (lower is better) Translates to: VWIYFVRMYVCVSHT*IASKGQKVRPLGTE Trigger: TTCAGTTCCAAGGGGTCTGACTTTCTGCCCTTTGCTTGCAATGCATGTATGTGATACACAGACATACATTCTGACAAAATATATCCATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CAA 90 bp | AAAACAGCAGAGCTGGCCTCTGCCCTGGGATCATTGTCCCTGTGCTaGCCCAGGTGGCAGGCTCGTCTTAGTCTTCAAGTCAGATGGCTT | + |
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Preference number: 2 (lower is better) Translates to: KTAELASALGSLSLC*PRWQARLSLQVRWL Trigger: AAGCCATCTGACTTGAAGACTAAGACGAGCCTGCCACCTGGGCAAGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCTCTGCTGTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | GGAGTGGACAGACAGATGGAAGAGCCAGAGGACTGGGTGACAGTCGCAATCTGGAATCTCAGCAGATCTTaGAGGCAGGAGGTTGCACAG | + |
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Preference number: 2 (lower is better) Translates to: GVDRQMEEPEDWVTVAIWNLSRS*RQEVAQ Trigger: CTGTGCAACCTCCTGCCTCCAAGATCTGCTGAGATT...CCAGATTGCGACTGTCACCCAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | CCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTGGAGCTGGCCTCTGCCCTaGGATCATTGTCCCTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: PCKKPSWPHVKRLSGHCWSWPLP*DHCPCA Trigger: AGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCT...CCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | CCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTGGAGGAAGAAATGGAGCTaGGACAGAGCTGAGGGTGGC | + |
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Preference number: 2 (lower is better) Translates to: PCKKPSWPHVKRLSGHCWRKKWS*DRAEGG Trigger: GCCACCCTCAGCTCTGTCCCAGCTCCATTTCTTCCT...CCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR TCA 90 bp | CTTCTGAAGTTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATGAGCTGGGACAGAGCTaGGGGTGGCATGGTTGTCAC | + |
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Preference number: 2 (lower is better) Translates to: LLKFLSSNPSNHMVAHNHELGQS*GWHGCH Trigger: GTGACAACCATGCCACCCTCAGCTCTGTCCCAGCTC...ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAAACTTCAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR GCA 90 bp | AGGGCACTGCTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACAGTTGGGTCCTCTGGAAGTaGTGTTTTCCTCTGAGCAAT | + |
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Preference number: 2 (lower is better) Translates to: RALLAARNGRDPVSKKNSWVLWK*CFPLSN Trigger: ATTGCTCAGAGGAAAACAGCACTTCCAGAGGACCCA...ACTGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | AGGGCACTGCTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACAGTCACAGAGCCCTCCCTTaGGACCAAGAGAATTTACAA | + |
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Preference number: 2 (lower is better) Translates to: RALLAARNGRDPVSKKNSHRALP*DQENLQ Trigger: TTGTAAATTCTCTTGGTCCCAAGGGAGGGCTCTGTG...ACTGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CAA 90 bp | TGTGGTATGGCTCTGCGGGCCTCTTTCTTGGGCTGCCCTCATTCATaGCCTGGAGATTTCATACATTCTTTGGGCAAGGTTCCACTGATG | + |
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Preference number: 2 (lower is better) Translates to: CGMALRASFLGCPHS*PGDFIHSLGKVPLM Trigger: CATCAGTGGAACCTTGCCCAAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCCCGCAGAGCCATACCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR TCA 90 bp | GATAAAACTAGCAAACAAGCAAAGGAGGACTGGGGCCATATCAAGGAGGTAGGCTCTGCACACAGCCTGTaGGCACTTGGCTTTACACCC | + |
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Preference number: 2 (lower is better) Translates to: DKTSKQAKEDWGHIKEVGSAHSL*ALGFTP Trigger: GGGTGTAAAGCCAAGTGCTCACAGGCTGTGTGCAGA...GCCTACCTCCTTGATATGGCCCCAGTCCTCCTTTGCTTGTTTGCTAGTTTTATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR TCA 90 bp | CCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTGGAAAAACAGTAGGCAGTaGTGGAGTGGCAAAGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: PCKKPSWPHVKRLSGHCWKNSRQ*WSGKGH Trigger: GTGGCCTTTGCCACTCCATCACTGCCTACTGTTTTT...CCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR GCA 90 bp | CAAATCCCCAGCATCCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTAGCAGAGCTGGCCTCTaGCCTGGGATCATTGTCCCT | + |
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Preference number: 2 (lower is better) Translates to: QIPSILVKSLHGHMSRDSSRAGL*PGIIVP Trigger: AGGGACAATGATCCCAGGGCAGAGGCCAGCTCTGCT...AGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | GCTTATCTCTTGTCTTTAGCTCCAGTTGCCTATGGTCTAAAGGTAAGCGACCTTGGCAGCCCTGTGGTATaGCTCTGCGGGCCTCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: AYLLSLAPVAYGLKVSDLGSPVV*LCGPLS Trigger: AGAAAGAGGCCCGCAGAGCCATACCACAGGGCTGCC...AAGGTCGCTTACCTTTAGACCATAGGCAACTGGAGCTAAAGACAAGAGATAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | CAAATCCCCAGCATCCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCTCCAACTCTACACCTaGTACCCAGGGCCTGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: QIPSILVKSLHGHMSRDSLQLYT*YPGPAA Trigger: TGCTGCAGGCCCTGGGTACCAGGTGTAGAGTTGGAG...AGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR GCA 90 bp | AGGGCACTGCTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACAGTGTCTTTAGCTCCAGTTaGCTATGGTCTAAAGGTAAG | + |
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Preference number: 2 (lower is better) Translates to: RALLAARNGRDPVSKKNSVFSSS*LWSKGK Trigger: CTTACCTTTAGACCATAGGCAACTGGAGCTAAAGAC...ACTGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | AGGGCACTGCTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACAGTCCATCAGTGATGACTTaGGGACCAGGAATTAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: RALLAARNGRDPVSKKNSPSVMT*GPGIRK Trigger: TTTTCTAATTCCTGGTCCCCAAGTCATCACTGATGG...ACTGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | CAAATCCCCAGCATCCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTATCAGACACTGGGGCTaGAGAGGTGGCTCAGTGGTT | + |
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Preference number: 2 (lower is better) Translates to: QIPSILVKSLHGHMSRDSIRHWG*RGGSVV Trigger: AACCACTGAGCCACCTCTCCAGCCCCAGTGTCTGAT...AGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR GCA 90 bp | AGGGCACTGCTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACAGTGAGGAGGTATTCAAGTaGTTATATTCAAGTGGTAGC | + |
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Preference number: 2 (lower is better) Translates to: RALLAARNGRDPVSKKNSEEVFK*LYSSGS Trigger: GCTACCACTTGAATATAAGCACTTGAATACCTCCTC...ACTGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR TCA 90 bp | CAAATCCCCAGCATCCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTATCAGCGATGAGAATTaGACCTGGGTCCTCTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: QIPSILVKSLHGHMSRDSISDEN*TWVLWK Trigger: CTTCCAGAGGACCCAGGTTCAATTCTCATCGCTGAT...AGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR GCA 90 bp | GGGCAGAAAGTCAGACCCCTTGGAACTGAAGTTACAGCTGTTAACTATCACATCATAGCTATCCTGGTCTaGACACAGCCTGTGAGCACT | + |
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Preference number: 2 (lower is better) Translates to: GQKVRPLGTEVTAVNYHIIAILV*TQPVST Trigger: AGTGCTCACAGGCTGTGTGCAGACCAGGATAGCTAT...GATGTGATAGTTAACAGCTGTAACTTCAGTTCCAAGGGGTCTGACTTTCTGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | CTTCTGAAGTTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCAAGCAAAGGAGGACTaGGGCCATATCAAGGAGGTA | + |
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Preference number: 2 (lower is better) Translates to: LLKFLSSNPSNHMVAHNHQAKED*GHIKEV Trigger: TACCTCCTTGATATGGCCCCAGTCCTCCTTTGCTTG...ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAAACTTCAGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR GCA 90 bp | CCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTGGGGGACACAAAGTAAATaGTTGCATTCAGAAAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: PCKKPSWPHVKRLSGHCWGTQSK*LHSERK Trigger: CTTCCTTTCTGAATGCAAGCATTTACTTTGTGTCCC...CCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CCA 90 bp | TTGTGGTTGAATCCAGGCCTGGGCGTTATAAAATCTTTCACAGGAGATTACTATGGAGAGGTGGCTCAGTaGTTAAGAGCACCGACTGCT | + |
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Preference number: 2 (lower is better) Translates to: LWLNPGLGVIKSFTGDYYGEVAQ*LRAPTA Trigger: AGCAGTCGGTGCTCTTAACCACTGAGCCACCTCTCC...ATAGTAATCTCCTGTGAAAGATTTTATAACGCCCAGGCCTGGATTCAACCACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR TCA 90 bp | CAAATCCCCAGCATCCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTGGTTGTCAAGATTTTTaGCAAGTGCCTTTCCCTTCC | + |
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Preference number: 2 (lower is better) Translates to: QIPSILVKSLHGHMSRDSGCQDF*QVPFPS Trigger: GGAAGGGAAAGGCACTTGTCAAAAATCTTGACAACC...AGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR GCA 90 bp | GATAAAACTAGCAAACAAGCAAAGGAGGACTGGGGCCATATCAAGGAGGTAGGCACAGTGATCTCATTTTaGGGAAAGAAAGCAAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: DKTSKQAKEDWGHIKEVGTVISF*GKKASL Trigger: GAGACTTGCTTTCTTTCCGCAAAATGAGATCACTGT...GCCTACCTCCTTGATATGGCCCCAGTCCTCCTTTGCTTGTTTGCTAGTTTTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGAAGTTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCGTCTTCTAGATCTCTaGAAACTGATACCAGGTAGA | + |
|
Preference number: 2 (lower is better) Translates to: LLKFLSSNPSNHMVAHNHRLLDL*KLIPGR Trigger: TCTACCTGGTATCAGTTTGCAGAGATCTAGAAGACG...ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAAACTTCAGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CCA 90 bp | GCTTATCTCTTGTCTTTAGCTCCAGTTGCCTATGGTCTAAAGGTAAGCGACCTTAGTCAGATGGCTTGTTaGGCTAGAACTCAGCAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: AYLLSLAPVAYGLKVSDLSQMAC*ARTQQR Trigger: TCTTTGCTGAGTTCTAGCCCAACAAGCCATCTGACT...AAGGTCGCTTACCTTTAGACCATAGGCAACTGGAGCTAAAGACAAGAGATAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CAA 90 bp | TATCACATACATGCATTGCAAGCAAAGGGCAGAAAGTCAGACCCCTaGGAACTGAAGTTACAGCTGTTAACTATCACATCAGCGATGAGA | + |
|
Preference number: 2 (lower is better) Translates to: YHIHALQAKGRKSDP*ELKLQLLTITSAMR Trigger: TCTCATCGCTGATGTGATAGTTAACAGCTGTAACTTCAGTTCCAAGGGGTCTGACTTTCTGCCCTTTGCTTGCAATGCATGTATGTGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR TCA 90 bp | GGCCTCTTTCTTGGGCTGCCCTCATTCATTGCCTGGAGATTTCATACATTCTTTATTGAAAGGCTACAGTaGTCTCATTTTGCGGAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: GLFLGLPSFIAWRFHTFFIERLQ*SHFAER Trigger: TCTTTCCGCAAAATGAGATCACTGTAGCCTTTCAAT...AAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR GCA 90 bp | GCTTATCTCTTGTCTTTAGCTCCAGTTGCCTATGGTCTAAAGGTAAGCGACCTTGCTGCCCTCATTCATTaGCTGGAGATTTCATACATT | + |
|
Preference number: 2 (lower is better) Translates to: AYLLSLAPVAYGLKVSDLAALIH*LEISYI Trigger: AATGTATGAAATCTCCAGGCAATGAATGAGGGCAGC...AAGGTCGCTTACCTTTAGACCATAGGCAACTGGAGCTAAAGACAAGAGATAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CCA 90 bp | CATTCTTGCTTCCTGCATCACAGGCTTCAGATTCTAGCAGAAGAAAGAATATTTTTAGAAATCAGACACTaGGGCTGGAGAGGTGGCTCA | + |
|
Preference number: 2 (lower is better) Translates to: HSCFLHHRLQILAEERIFLEIRH*GWRGGS Trigger: TGAGCCACCTCTCCAGCCCCAGTGTCTGATTTCTAA...AAATATTCTTTCTTCTGCTAGAATCTGAAGCCTGTGATGCAGGAAGCAAGAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR TCA 90 bp | TTGTGGTTGAATCCAGGCCTGGGCGTTATAAAATCTTTCACAGGAGATTACTATAAGGGGTATCAGAAGTaGCAGCTAGCCATACTCTTA | + |
|
Preference number: 2 (lower is better) Translates to: LWLNPGLGVIKSFTGDYYKGYQK*QLAILL Trigger: TAAGAGTATGGCTAGCTGTCACTTCTGATACCCCTT...ATAGTAATCTCCTGTGAAAGATTTTATAACGCCCAGGCCTGGATTCAACCACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CCA 90 bp | CTTCTGAAGTTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCCTCATTCATTGCCTaGAGATTTCATACATTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: LLKFLSSNPSNHMVAHNHPSFIA*RFHTFF Trigger: AAAGAATGTATGAAATCTCCAGGCAATGAATGAGGG...ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAAACTTCAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CCA 90 bp | CAAATCCCCAGCATCCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTACATATGGGCTCCTTTaGAGTTGTTTGGTTTTAGTT | + |
|
Preference number: 2 (lower is better) Translates to: QIPSILVKSLHGHMSRDSTYGLL*SCLVLV Trigger: AACTAAAACCAAACAACTCCAAAGGAGCCCATATGT...AGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR GCA 72 bp | GCAGAGCTGGCCTCTGCCCTGGGATCATTGTCCCTGTaGTTGCCCAGGTGGCAGGCTCGTCTTAGTCTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: AELASALGSLSL*LPRWQARLSLQ Trigger: TTGAAGACTAAGACGAGCCTGCCACCTGGGCAAGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCTCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CAA 90 bp | GGAGTGGACAGACAGATGGAAGAGCCAGAGGACTGGGTGACAGTCGCAATCTGGCTGCGGGCCTCTTTCTaGGGCTGCCCTCATTCATTG | + |
|
Preference number: 3 (lower is better) Translates to: GVDRQMEEPEDWVTVAIWLRASF*GCPHSL Trigger: CAATGAATGAGGGCAGCCCAAGAAAGAGGCCCGCAG...CCAGATTGCGACTGTCACCCAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR GCA 72 bp | CCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTaGTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: PSWPHVKRLSGH*WLPVMGETLSP Trigger: TGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | GGCAGCCCTGTGGTATGGCTCTGCGGGCCTCTTTCTTaGGCTGCCCTCATTCATTGCCTGGAGATTTCATAC | + |
|
Preference number: 3 (lower is better) Translates to: GSPVVWLCGPLS*AALIHCLEISY Trigger: GTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCCCGCAGAGCCATACCACAGGGCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | TCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTaGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGA | + |
|
Preference number: 3 (lower is better) Translates to: SWPHVKRLSGHC*LPVMGETLSPR Trigger: TCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | GGTGGAGTGGACAGACAGATGGAAGAGCCAGAGGACTaGGTGACAGTCGCAATCTGGACAAAGCAAGCATGG | + |
|
Preference number: 3 (lower is better) Translates to: GGVDRQMEEPED*VTVAIWTKQAW Trigger: CCATGCTTGCTTTGTCCAGATTGCGACTGTCACCCAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | CCATTTAAAACCTTAGGGCTGTGGTGCCGCTCAGTGTaGGGGTTCATGCCTACTGGGAGTAAGACCCTGGGT | + |
|
Preference number: 3 (lower is better) Translates to: PFKTLGLWCRSV*GFMPTGSKTLG Trigger: ACCCAGGGTCTTACTCCCAGTAGGCATGAACCCCCACACTGAGCGGCACCACAGCCCTAAGGTTTTAAATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | TCGATGAAACACCGAAAGTGTCTGTGGCTGGACTGTTaGCCTGTCGCTGCTGAGTTCCAGCTGCCTTTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: SMKHRKCLWLDC*PVAAEFQLPFC Trigger: ACAGAAAGGCAGCTGGAACTCAGCAGCGACAGGCCAACAGTCCAGCCACAGACACTTTCGGTGTTTCATCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR TCA 72 bp | GAGTGGACAGACAGATGGAAGAGCCAGAGGACTGGGTaGCAGTCGCAATCTGGACAAAGCAAGCATGGTGAA | + |
|
Preference number: 3 (lower is better) Translates to: EWTDRWKSQRTG*QSQSGQSKHGE Trigger: TTCACCATGCTTGCTTTGTCCAGATTGCGACTGTCACCCAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | AAGCTTTTGCCTAGACACTTCTCAAAACAGCAGAGCTaGCCTCTGCCCTGGGATCATTGTCCCTGTGCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: KLLPRHFSKQQS*PLPWDHCPCAC Trigger: GCAAGCACAGGGACAATGATCCCAGGGCAGAGGCCAGCTCTGCTGTTTTGAGAAGTGTCTAGGCAAAAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CAA 90 bp | AGGGCACTGCTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACAGTCGCCCCCACCCCAAATaGATTTCTCTTTCAAACAGA | + |
|
Preference number: 3 (lower is better) Translates to: RALLAARNGRDPVSKKNSRPHPK*ISLSNR Trigger: TCTGTTTGAAAGAGAAATCAATTTGGGGTGGGGGCG...ACTGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR GCA 72 bp | CTCTGCGGGCCTCTTTCTTGGGCTGCCCTCATTCATTaGCTGGAGATTTCATACATTCTTTGGGCAAGGTTC | + |
|
Preference number: 3 (lower is better) Translates to: LCGPLSWAALIH*LEISYILWARF Trigger: GAACCTTGCCCAAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCCCGCAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR GCA 72 bp | GGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACCGACTaGTCTTCTGAAGTTTCTGAGTTCAAATCCCAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GWRGGSVVKSTD*SSEVSEFKSQQ Trigger: TTGCTGGGATTTGAACTCAGAAACTTCAGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCACCTCTCCAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | GGTTCAAATCCCCAGCATCCTTGTAAAAAGCCTTCATaGCCACATGTCAAGAGACTCTCAGGGCACTGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: GSNPQHPCKKPS*PHVKRLSGHCW Trigger: CCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTGAACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR TCA 72 bp | TTCGCTTGCCAGCTTGGCAGACAAGATGAAGTGCTGTaGATTTTGCCATCAGTGATGACTTGGGGACCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: FACQLGRQDEVL*ILPSVMTWGPG Trigger: TCCTGGTCCCCAAGTCATCACTGATGGCAAAATTCACAGCACTTCATCTTGTCTGCCAAGCTGGCAAGCGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | ATAGCTATCCTGGTCTGCACACAGCCTGTGAGCACTTaGCTTTACACCCCTGGACCAGATAACAAAGGTGAA | + |
|
Preference number: 3 (lower is better) Translates to: IAILVCTQPVST*LYTPGPDNKGE Trigger: TTCACCTTTGTTATCTGGTCCAGGGGTGTAAAGCCAAGTGCTCACAGGCTGTGTGCAGACCAGGATAGCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CAA 90 bp | CCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTGGCACACCCACTCTGATTaGGTAGGTGAGATATTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: PCKKPSWPHVKRLSGHCWHTHSD*VGEIFC Trigger: ACAGAATATCTCACCTACCAAATCAGAGTGGGTGTG...CCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR-3UTR CAA 90 bp | CAAATCCCCAGCATCCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTGACTACATATTGGACTaGAGGCCGGCCTGGGAAACA | + |
|
Preference number: 3 (lower is better) Translates to: QIPSILVKSLHGHMSRDSDYILD*RPAWET Trigger: TGTTTCCCAGGCCGGCCTCAAGTCCAATATGTAGTC...AGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR TCA 72 bp | CAGACACCATTTCGCTTGCCAGCTTGGCAGACAAGATaGAGTGCTGTGAATTTTGCCATCAGTGATGACTTG | + |
|
Preference number: 3 (lower is better) Translates to: QTPFRLPAWQTR*SAVNFAISDDL Trigger: CAAGTCATCACTGATGGCAAAATTCACAGCACTTCATCTTGTCTGCCAAGCTGGCAAGCGAAATGGTGTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | TGTATACGTTCAACACAAACATTAGAAATCAGACACTaGGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACC | + |
|
Preference number: 3 (lower is better) Translates to: CIRSTQTLEIRH*GWRGGSVVKST Trigger: GGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCAGTGTCTGATTTCTAATGTTTGTGTTGAACGTATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR GCA 72 bp | TACCATAAAGAACAGTCACACACACACACACATACATaGACACACACACAGACACGCATATACACACAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: YHKEQSHTHTHT*THTQTRIYTQG Trigger: CCCCTGTGTGTATATGCGTGTCTGTGTGTGTGTGCATGTATGTGTGTGTGTGTGTGACTGTTCTTTATGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CCA 72 bp | ATCTTAAAAAGAACAAGTGTTCAACATCTTGGTAGGTaGAGTGGACAGACAGATGGAAGAGCCAGAGGACTG | + |
|
Preference number: 3 (lower is better) Translates to: ILKRTSVQHLGR*SGQTDGRARGL Trigger: CAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTCCACCTACCAAGATGTTGAACACTTGTTCTTTTTAAGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR TCA 72 bp | CCCTGCCAAAGGTCAAATTCAGGTTGTCAAGATTTTTaGCAAGTGCCTTTCCCTTCCATCTTGAGCTTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: PCQRSNSGCQDF*QVPFPSILSFQ Trigger: TTGAAAGCTCAAGATGGAAGGGAAAGGCACTTGTCAAAAATCTTGACAACCTGAATTTGACCTTTGGCAGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CAA 90 bp | CATTCTTGCTTCCTGCATCACAGGCTTCAGATTCTAGCAGAAGAAAGAATATTTAGAAAGTCAGACCCCTaGGAACTGAAGTTACAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: HSCFLHHRLQILAEERIFRKSDP*ELKLQL Trigger: CAGCTGTAACTTCAGTTCCAAGGGGTCTGACTTTCT...AAATATTCTTTCTTCTGCTAGAATCTGAAGCCTGTGATGCAGGAAGCAAGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CAA 90 bp | TTGTGGTTGAATCCAGGCCTGGGCGTTATAAAATCTTTCACAGGAGATTACTATATACCAGGTAGATCATaGAAAGGCTACAGTGATCTC | + |
|
Preference number: 3 (lower is better) Translates to: LWLNPGLGVIKSFTGDYYIPGRS*KGYSDL Trigger: GAGATCACTGTAGCCTTTCAATGATCTACCTGGTAT...ATAGTAATCTCCTGTGAAAGATTTTATAACGCCCAGGCCTGGATTCAACCACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR GCA 72 bp | TATTTTGTCAGAATGTATGTCTGTGTATCACATACATaGATTGCAAGCAAAGGGCAGAAAGTCAGACCCCTT | + |
|
Preference number: 3 (lower is better) Translates to: YFVRMYVCVSHT*IASKGQKVRPL Trigger: AAGGGGTCTGACTTTCTGCCCTTTGCTTGCAATGCATGTATGTGATACACAGACATACATTCTGACAAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR TCA 72 bp | AAAGCAAGCATGGTGAACCTAGTTCAAACTTTATCCTaGAAGTCAGAGCAAATTCTTCACTGTTGCACATTC | + |
|
Preference number: 3 (lower is better) Translates to: KASMVNLVQTLS*KSEQILHCCTF Trigger: GAATGTGCAACAGTGAAGAATTTGCTCTGACTTTCAGGATAAAGTTTGAACTAGGTTCACCATGCTTGCTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR-3UTR CAA 90 bp | CATTCTTGCTTCCTGCATCACAGGCTTCAGATTCTAGCAGAAGAAAGAATATTTGCAAATTCTTCACTGTaGCACATTCTAGAATATAGG | + |
|
Preference number: 3 (lower is better) Translates to: HSCFLHHRLQILAEERIFANSSL*HILEYR Trigger: CCTATATTCTAGAATGTGCAACAGTGAAGAATTTGC...AAATATTCTTTCTTCTGCTAGAATCTGAAGCCTGTGATGCAGGAAGCAAGAATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR GCA 90 bp | CGAAAGTGTCTGTGGCTGGACTGTTGGCCTGTCGCTGCTGAGTTCCAGCTGCCTGCCACAGACACAGCCTaGAGGAGCACCTGCAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: RKCLWLDCWPVAAEFQLPATDTA*RSTCRS Trigger: GCTCCTGCAGGTGCTCCTGCAGGCTGTGTCTGTGGC...AGGCAGCTGGAACTCAGCAGCGACAGGCCAACAGTCCAGCCACAGACACTTTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR CCA 90 bp | ACTGGGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCTGAAGGAGGTCTTCCACCTCTaGGCAAGGGAGGAGTACTTA | + |
|
Preference number: 4 (lower is better) Translates to: TGAGEVAQWLRAPTALLKEVFHL*AREEYL Trigger: TAAGTACTCCTCCCTTGCCCAGAGGTGGAAGACCTC...CTTCAGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR CCA 90 bp | CGAAAGTGTCTGTGGCTGGACTGTTGGCCTGTCGCTGCTGAGTTCCAGCTGCCTATCCTCCCTGATAGATaGAGTACAGTCCGTACTCGG | + |
|
Preference number: 4 (lower is better) Translates to: RKCLWLDCWPVAAEFQLPILPDR*STVRTR Trigger: CCGAGTACGGACTGTACTCCATCTATCAGGGAGGAT...AGGCAGCTGGAACTCAGCAGCGACAGGCCAACAGTCCAGCCACAGACACTTTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR CCA 90 bp | AGGGCACTGCTGGCTGCCCGTAATGGGAGAGACCCTGTCTCCAAGAAAAACAGTCGTACTCGGCATCTCTaGACCAACAGCTGTTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: RALLAARNGRDPVSKKNSRTRHL*TNSCFW Trigger: CCAGAAACAGCTGTTGGTCCAGAGATGCCGAGTACG...ACTGTTTTTCTTGGAGACAGGGTCTCTCCCATTACGGGCAGCCAGCAGTGCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR TCA 90 bp | CGAAAGTGTCTGTGGCTGGACTGTTGGCCTGTCGCTGCTGAGTTCCAGCTGCCTGTAGAAATGGTGTCCTaGAAGGTTCTCAAAGTCACC | + |
|
Preference number: 4 (lower is better) Translates to: RKCLWLDCWPVAAEFQLPVEMVS*KVLKVT Trigger: GGTGACTTTGAGAACCTTTCAGGACACCATTTCTAC...AGGCAGCTGGAACTCAGCAGCGACAGGCCAACAGTCCAGCCACAGACACTTTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR CCA 90 bp | GGAGTGGACAGACAGATGGAAGAGCCAGAGGACTGGGTGACAGTCGCAATCTGGACTGCACCAGCTGTTTaGTTCTCACCTTGTCCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: GVDRQMEEPEDWVTVAIWTAPAV*FSPCPL Trigger: CAAAGGACAAGGTGAGAACCAAACAGCTGGTGCAGT...CCAGATTGCGACTGTCACCCAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR CCA 90 bp | GGAGTGGACAGACAGATGGAAGAGCCAGAGGACTGGGTGACAGTCGCAATCTGGTTCCTAAAGAGCACGTaGTTGAGAAATGAATGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: GVDRQMEEPEDWVTVAIWFLKST*LRNECP Trigger: AGGGCATTCATTTCTCAACCACGTGCTCTTTAGGAA...CCAGATTGCGACTGTCACCCAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR CCA 90 bp | CCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTGGCCTTTGAGACCATCTTaGAAGCGTCTTCAGCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: PCKKPSWPHVKRLSGHCWPLRPS*KRLQLP Trigger: AGGAAGCTGAAGACGCTTCCAAGATGGTCTCAAAGG...CCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| 3UTR CAA 72 bp | AGCCTGCTGCTCCATCGGGGTACACCAGCTTATCTCTaGTCTTTAGCTCCAGTTGCCTATGGTCTAAAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SLLLHRGTPAYL*SLAPVAYGLKV Trigger: TACCTTTAGACCATAGGCAACTGGAGCTAAAGACAAGAGATAAGCTGGTGTACCCCGATGGAGCAGCAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR GCA 90 bp | GTCGCTTTCCAGGCATGCCTTCAACCTAGAAGATTACTGGGTACTTTAGGGCTGAGTTGCCTCTTAACCTaGAAGCAGGGTCTGTTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: VAFQACLQPRRLLGTLGLSCLLT*KQGLFK Trigger: CTTGAACAGACCCTGCTTGCAGGTTAAGAGGCAACT...CAGCCCTAAAGTACCCAGTAATCTTCTAGGTTGAAGGCATGCCTGGAAAGCGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR TCA 90 bp | GGCCTCTTTCTTGGGCTGCCCTCATTCATTGCCTGGAGATTTCATACATTCTTTCACGTGGTTGAGAAATaGATGCCCTTTCCGAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GLFLGLPSFIAWRFHTFFHVVEK*MPFPRG Trigger: TCCTCTCGGAAAGGGCATTCATTTCTCAACCACGTG...AAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
||
| CDS-3UTR GCA 90 bp | GTCGCTTTCCAGGCATGCCTTCAACCTAGAAGATTACTGGGTACTTTAGGGCTGGGAGGAGTACTTAGCTaGTTTTCTGGAACTGTAGAA | + |
|
Preference number: 4 (lower is better) Translates to: VAFQACLQPRRLLGTLGLGGVLS*FSGTVE Trigger: TTCTACAGTTCCAGAAAAGCAGCTAAGTACTCCTCC...CAGCCCTAAAGTACCCAGTAATCTTCTAGGTTGAAGGCATGCCTGGAAAGCGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS-3UTR GCA 90 bp | GGCCTCTTTCTTGGGCTGCCCTCATTCATTGCCTGGAGATTTCATACATTCTTTTGGTTGAGAAATGAATaGCCTTTCCGAGAGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: GLFLGLPSFIAWRFHTFFWLRNE*PFREDS Trigger: GGAGTCCTCTCGGAAAGGGCATTCATTTCTCAACCA...AAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCAGCCCAAGAAAGAGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS-3UTR TCA 90 bp | CTTCTGAAGTTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATACCTCTTCAATGAGCTaGTACAGTTGCCTCTTAACC | + |
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Preference number: 4 (lower is better) Translates to: LLKFLSSNPSNHMVAHNHTSSMS*YSCLLT Trigger: GGTTAAGAGGCAACTGTATCAGCTCATTGAAGAGGT...ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAAACTTCAGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS-3UTR CCA 90 bp | ACTAGCAAACAAGCAAAGGAGGACTGGGGCCATATCAAGGAGGTAGGCACCAAAAGGTCTTTCCATCCTTaGAGATTGGAATTAAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TSKQAKEDWGHIKEVGTKRSFHP*RLELKL Trigger: CAGCTTTAATTCCAATCTCCAAGGATGGAAAGACCT...TTTGGTGCCTACCTCCTTGATATGGCCCCAGTCCTCCTTTGCTTGTTTGCTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CAA 72 bp | AAACTGTTGAGACTCCAGACGTCACAGAGCCCTCCCTaGGGACCAAGAGAATTTACAAAAGTCTTCCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: KLLRLQTSQSPP*GPREFTKVFQK Trigger: CTTTTGGAAGACTTTTGTAAATTCTCTTGGTCCCAAGGGAGGGCTCTGTGACGTCTGGAGTCTCAACAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CAA 72 bp | GCCCTGCCAAAGGTCAAATTCAGGTTGTCAAGATTTTaGACAAGTGCCTTTCCCTTCCATCTTGAGCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: ALPKVKFRLSRF*TSAFPFHLELS Trigger: TGAAAGCTCAAGATGGAAGGGAAAGGCACTTGTCAAAAATCTTGACAACCTGAATTTGACCTTTGGCAGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS-3UTR TCA 90 bp | CATTCTTGCTTCCTGCATCACAGGCTTCAGATTCTAGCAGAAGAAAGAATATTTATCATCCTGAAGTGCTaGCTGAAGCTGAGGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: HSCFLHHRLQILAEERIFIILKC*LKLRSF Trigger: GAAGGACCTCAGCTTCAGTCAGCACTTCAGGATGAT...AAATATTCTTTCTTCTGCTAGAATCTGAAGCCTGTGATGCAGGAAGCAAGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CAA 72 bp | TGCCCTCATTCATTGCCTGGAGATTTCATACATTCTTaGGGCAAGGTTCCACTGATGATGGGATATTATGTT | + |
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Preference number: 4 (lower is better) Translates to: CPHSLPGDFIHS*GKVPLMMGYYV Trigger: AACATAATATCCCATCATCAGTGGAACCTTGCCCAAAGAATGTATGAAATCTCCAGGCAATGAATGAGGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CAA 72 bp | CTTCTAGATCTCTGCAAACTGATACCAGGTAGATCATaGAAAGGCTACAGTGATCTCATTTTGCGGAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: LLDLCKLIPGRS*KGYSDLILRKE Trigger: TTCTTTCCGCAAAATGAGATCACTGTAGCCTTTCAATGATCTACCTGGTATCAGTTTGCAGAGATCTAGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| 3UTR CAA 72 bp | CCAGAAAGTTCTTATTCTAGAATATTCTCTCCATTCTaGCTTCCTGCATCACAGGCTTCAGATTCTAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: PESSYSRIFSPF*LPASQASDSSR Trigger: TCTGCTAGAATCTGAAGCCTGTGATGCAGGAAGCAAGAATGGAGAGAATATTCTAGAATAAGAACTTTCTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS CCA 90 bp | AGGCCCTCCTGCTCGATGACCAGCTCTCCATTCCTAAAGAGCACGTaGTTGAGAAATGAATGCCCTTTCCGAGAGGACTCCCAGGATTCA | + |
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Preference number: 5 (lower is better) Translates to: RPSCSMTSSPFLKST*LRNECPFREDSQDS Trigger: TGAATCCTGGGAGTCCTCTCGGAAAGGGCATTCATTTCTCAACCACGTGCTCTTTAGGAATGGAGAGCTGGTCATCGAGCAGGAGGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046383.12 ENSMUST00000174840.2 |
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| CDS-3UTR CAA 90 bp | GGAGTGGACAGACAGATGGAAGAGCCAGAGGACTGGGTGACAGTCGCAATCTGGAATCCTCATCCGTCTTaGAGAAGCAAGCTAGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GVDRQMEEPEDWVTVAIWNPHPS*RSKLVQ Trigger: TTGGACTAGCTTGCTTCTCAAAGACGGATGAGGATT...CCAGATTGCGACTGTCACCCAGTCCTCTGGCTCTTCCATCTGTCTGTCCACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS TCA 90 bp | GTCCAATTTTGGAGTAATTGTCCTGCAGCTGCTTCATCTCGTTGGTaGAGTACATGTAAGTCACAGCCACAGACACAGCCTGCAGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: VQFWSNCPAAASSRW*STCKSQPQTQPAGA Trigger: TGCTCCTGCAGGCTGTGTCTGTGGCTGTGACTTACATGTACTTCACCAACGAGATGAAGCAGCTGCAGGACAATTACTCCAAAATTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046383.12 ENSMUST00000174840.2 |
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| CDS CCA 90 bp | GATCCGGATAGCTGGTGTACTTGTAGATGTACTGCACCAGCTGTTTaGTTCTCACCTTGTCCTTTGAGACCATCTTGGAAGCGTCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: DPDSWCTCRCTAPAV*FSPCPLRPSWKRLQ Trigger: CTGAAGACGCTTCCAAGATGGTCTCAAAGGACAAGGTGAGAACCAAACAGCTGGTGCAGTACATCTACAAGTACACCAGCTATCCGGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS-3UTR CAA 90 bp | CCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTCAGGGCACTGCTGGAATGAGCTGATACAGTaGCCTCTTAACCTGCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: PCKKPSWPHVKRLSGHCWNELIQ*PLNLQA Trigger: TGCTTGCAGGTTAAGAGGCAACTGTATCAGCTCATT...CCAGCAGTGCCCTGAGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS TCA 90 bp | CTTGTAGATGTACTGCACCAGCTGTTTGGTTCTCACCTTGTCCTTTaGGACCATCTTGGAAGCGTCTTCAGCTTCCTGAAATCGGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: LVDVLHQLFGSHLVL*DHLGSVFSFLKSEV Trigger: TACTTCCGATTTCAGGAAGCTGAAGACGCTTCCAAGATGGTCTCAAAGGACAAGGTGAGAACCAAACAGCTGGTGCAGTACATCTACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS TCA 90 bp | GCTCGTTGGAAGCCTCTTGCTGGTTTTAAAGACAACCTTGTCCTTTaGGACCATCTTGGAAGCGTCTTCAGCTTCCTGAAATCGGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: ARWKPLAGFKDNLVL*DHLGSVFSFLKSEV Trigger: TACTTCCGATTTCAGGAAGCTGAAGACGCTTCCAAGATGGTCTCAAAGGACAAGGTTGTCTTTAAAACCAGCAAGAGGCTTCCAACGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174840.2 |
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| CDS CCA 90 bp | AGAAATGAATGCCCTTTCCGAGAGGACTCCCAGGATTCAATCTTCTaGCCTAAGGTCTTTCCATCCTTGGAGATTGGAATTAAAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: RNECPFREDSQDSIF*PKVFPSLEIGIKAE Trigger: CTCAGCTTTAATTCCAATCTCCAAGGATGGAAAGACCTTAGGCCAGAAGATTGAATCCTGGGAGTCCTCTCGGAAAGGGCATTCATTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046383.12 ENSMUST00000174840.2 |
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| CDS-3UTR CAA 90 bp | GCTTATCTCTTGTCTTTAGCTCCAGTTGCCTATGGTCTAAAGGTAAGCGACCTTTACTGCACCAGCTGTTaGGTTCTCACCTTGTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: AYLLSLAPVAYGLKVSDLYCTSC*VLTLSF Trigger: AAAGGACAAGGTGAGAACCAAACAGCTGGTGCAGTA...AAGGTCGCTTACCTTTAGACCATAGGCAACTGGAGCTAAAGACAAGAGATAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS-3UTR CAA 90 bp | CAAATCCCCAGCATCCTTGTAAAAAGCCTTCATGGCCACATGTCAAGAGACTCTTTCCATCCTTGGAGATaGGAATTAAAGCTGAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: QIPSILVKSLHGHMSRDSFHPWR*ELKLSC Trigger: GCAACTCAGCTTTAATTCCAATCTCCAAGGATGGAA...AGAGTCTCTTGACATGTGGCCATGAAGGCTTTTTACAAGGATGCTGGGGATTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS-3UTR CAA 90 bp | TTGTGGTTGAATCCAGGCCTGGGCGTTATAAAATCTTTCACAGGAGATTACTATTTCTCACCTTGTCCTTaGAGACCATCTTGGAAGCGT | + |
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Preference number: 5 (lower is better) Translates to: LWLNPGLGVIKSFTGDYYFSPCP*RPSWKR Trigger: ACGCTTCCAAGATGGTCTCAAAGGACAAGGTGAGAA...ATAGTAATCTCCTGTGAAAGATTTTATAACGCCCAGGCCTGGATTCAACCACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS-3UTR CAA 90 bp | CATTCTTGCTTCCTGCATCACAGGCTTCAGATTCTAGCAGAAGAAAGAATATTTAAAGAAGCTGGCTTCTaGATCCAGGTCCATCAAATG | + |
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Preference number: 5 (lower is better) Translates to: HSCFLHHRLQILAEERIFKEAGF*IQVHQM Trigger: CATTTGATGGACCTGGATCAAGAAGCCAGCTTCTTT...AAATATTCTTTCTTCTGCTAGAATCTGAAGCCTGTGATGCAGGAAGCAAGAATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS CAA 90 bp | CCCTCCTGCTCGATGACCAGCTCTCCATTCCTAAAGAGCACGTGGTaGAGAAATGAATGCCCTTTCCGAGAGGACTCCCAGGATTCAATC | + |
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Preference number: 6 (lower is better) Translates to: PSCSMTSSPFLKSTW*RNECPFREDSQDSI Trigger: GATTGAATCCTGGGAGTCCTCTCGGAAAGGGCATTCATTTCTCAACCACGTGCTCTTTAGGAATGGAGAGCTGGTCATCGAGCAGGAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046383.12 ENSMUST00000174840.2 |
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| CDS CCA 72 bp | CCTGCAAGCAGGGTCTGTTCAAGATCTCTCCATCAGTaGAGTCCCAGAAATCCTCATCCGTCTTTGAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: PASRVCSRSLHQ*SPRNPHPSLRS Trigger: GCTTCTCAAAGACGGATGAGGATTTCTGGGACTCCACTGATGGAGAGATCTTGAACAGACCCTGCTTGCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046383.12 ENSMUST00000174840.2 |
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| CDS CAA 72 bp | TCGATGACCAGCTCTCCATTCCTAAAGAGCACGTGGTaGAGAAATGAATGCCCTTTCCGAGAGGACTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: SMTSSPFLKSTW*RNECPFREDSQ Trigger: CTGGGAGTCCTCTCGGAAAGGGCATTCATTTCTCAACCACGTGCTCTTTAGGAATGGAGAGCTGGTCATCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046383.12 ENSMUST00000174840.2 |
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| CDS TCA 72 bp | TGGAGTAATTGTCCTGCAGCTGCTTCATCTCGTTGGTaGAGTACATGTAAGTCACAGCCACAGACACAGCCT | + |
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Preference number: 6 (lower is better) Translates to: WSNCPAAASSRW*STCKSQPQTQP Trigger: AGGCTGTGTCTGTGGCTGTGACTTACATGTACTTCACCAACGAGATGAAGCAGCTGCAGGACAATTACTCCA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046383.12 ENSMUST00000174840.2 |
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| CDS TCA 72 bp | GTACTGCACCAGCTGTTTGGTTCTCACCTTGTCCTTTaGGACCATCTTGGAAGCGTCTTCAGCTTCCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: VLHQLFGSHLVL*DHLGSVFSFLK Trigger: TTTCAGGAAGCTGAAGACGCTTCCAAGATGGTCTCAAAGGACAAGGTGAGAACCAAACAGCTGGTGCAGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS CCA 72 bp | CCTCATCCGTCTTTGAGAAGCAAGCTAGTCCAATTTTaGAGTAATTGTCCTGCAGCTGCTTCATCTCGTTGG | + |
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Preference number: 6 (lower is better) Translates to: PHPSLRSKLVQF*SNCPAAASSRW Trigger: CCAACGAGATGAAGCAGCTGCAGGACAATTACTCCAAAATTGGACTAGCTTGCTTCTCAAAGACGGATGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046383.12 ENSMUST00000174840.2 |
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| CDS CCA 72 bp | GCTGTTTGGTTCTCACCTTGTCCTTTGAGACCATCTTaGAAGCGTCTTCAGCTTCCTGAAATCGGAAGTATG | + |
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Preference number: 6 (lower is better) Translates to: AVWFSPCPLRPS*KRLQLPEIGSM Trigger: CATACTTCCGATTTCAGGAAGCTGAAGACGCTTCCAAGATGGTCTCAAAGGACAAGGTGAGAACCAAACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS CCA 72 bp | AGCTGGTGTACTTGTAGATGTACTGCACCAGCTGTTTaGTTCTCACCTTGTCCTTTGAGACCATCTTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: SWCTCRCTAPAV*FSPCPLRPSWK Trigger: CTTCCAAGATGGTCTCAAAGGACAAGGTGAGAACCAAACAGCTGGTGCAGTACATCTACAAGTACACCAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046383.12 |
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| CDS CAA 72 bp | CTCGTTGGAAGCCTCTTGCTGGTTTTAAAGACAACCTaGTCCTTTGAGACCATCTTGGAAGCGTCTTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LVGSLLLVLKTT*SFETILEASSA Trigger: AGCTGAAGACGCTTCCAAGATGGTCTCAAAGGACAAGGTTGTCTTTAAAACCAGCAAGAGGCTTCCAACGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174840.2 |
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| CDS TCA 72 bp | AAGCCTCTTGCTGGTTTTAAAGACAACCTTGTCCTTTaGGACCATCTTGGAAGCGTCTTCAGCTTCCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: KPLAGFKDNLVL*DHLGSVFSFLK Trigger: TTTCAGGAAGCTGAAGACGCTTCCAAGATGGTCTCAAAGGACAAGGTTGTCTTTAAAACCAGCAAGAGGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174840.2 |
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