Pregenerated sensors for TNFRSF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029075Ensembl transcript IDs: ENSMUST00000030952.6
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCATACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTaGAGGGTACTGGCAGGCATCAGGATATGGGTTGTCCGTGCCCCA | + |
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Preference number: 1 (lower is better) Translates to: AYIGKPRASPAPRTV*RVLAGIRIWVVRAP Trigger: TGGGGCACGGACAACCCATATCCTGATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| 3UTR CCA 90 bp | GAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTaGCAGGCATCAGGATATGGGTTGTCCGTGCCCCATAAAATCCAC | + |
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Preference number: 1 (lower is better) Translates to: ESPEPAQHLERCGGY*QASGYGLSVPHKIH Trigger: GTGGATTTTATGGGGCACGGACAACCCATATCCTGATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| 3UTR GCA 90 bp | ACAGCTGCTAGCATGTTTATTAGGAGCACCACCAGGCAGGTAGTATaGATAGCATACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGA | + |
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Preference number: 1 (lower is better) Translates to: TAASMFIRSTTRQVV*IAYIGKPRASPAPR Trigger: TCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTATGCTATGCATACTACCTGCCTGGTGGTGCTCCTAATAAACATGCTAGCAGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| 3UTR CCA 72 bp | GGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTaGAGGGTACTGGCAGGCATCAGGATATGGGTTGTC | + |
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Preference number: 3 (lower is better) Translates to: GKPRASPAPRTV*RVLAGIRIWVV Trigger: GACAACCCATATCCTGATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | CCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCAGGCATCAGGAGCAGCAGAAGGGCTGTaGGCTGCTGAACCCACACAT | + |
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Preference number: 4 (lower is better) Translates to: PEPAQHLERCGGYWQASGAAEGL*AAEPTH Trigger: ATGTGTGGGTTCAGCAGCCCACAGCCCTTCTGCTGC...TCCTGATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | AAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCAGGCATCCACCATACCATGGCCTaGCTGGCACTCACGACAGCA | + |
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Preference number: 4 (lower is better) Translates to: KPRASPAPRTVWRVLAGIHHTMA*LALTTA Trigger: TGCTGTCGTGAGTGCCAGCCAGGCCATGGTATGGTG...GATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | ATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCACGTCCAAGCTGTCACTaGCTGGGTGGCGGGTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: IGKPRASPAPRTVWRVLARPSCH*LGGGSA Trigger: AGCAGACCCGCCACCCAGCCAGTGACAGCTTGGACG...TGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | AGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCAGGCATCACTGAATGTAGGGCGCTaGGTCTCCCAGAGCAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: SPEPAQHLERCGGYWQASLNVGR*VSQSSV Trigger: CACACTGCTCTGGGAGACCCAGCGCCCTACATTCAG...TGATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR GCA 90 bp | AAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCAGGCATCAATTGGTCCAGGGCTTaGAGGCCTGGTTGTTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: KPRASPAPRTVWRVLAGINWSRA*RPGCCL Trigger: CAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATT...GATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR GCA 90 bp | AGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCAGGCATCAGGCCAGAGTAAAGTGTaGGTCTGTGTGTTCCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: SPEPAQHLERCGGYWQASGQSKV*VCVFLL Trigger: CAGGAGGAACACACAGACGCACACTTTACTCTGGCC...TGATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | AAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCAGGCATCGCAACTCAGAAGTCCTaGGCCAGACTGTGGTGGATT | + |
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Preference number: 4 (lower is better) Translates to: KPRASPAPRTVWRVLAGIATQKS*ARLWWI Trigger: AATCCACCACAGTCTGGCCCAGGACTTCTGAGTTGC...GATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | ATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCACAGGAGTCACCAAGGTaGGTGGAGAGGGCAACTCAG | + |
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Preference number: 4 (lower is better) Translates to: IGKPRASPAPRTVWRVLAQESPR*VERATQ Trigger: CTGAGTTGCCCTCTCCACCCACCTTGGTGACTCCTG...TGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR GCA 90 bp | TACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGTGCAGGCCTGGTTGTTaGCTGGAGAAAAGTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: YIGKPRASPAPRTVWRVLCRPGC*LEKSGQ Trigger: CTGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCA...CAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | ACCAGGCAGGTAGTATGCATAGCATACATAGGAAAGCCCAGAGCCAGCCCAGCATCTCCCAGAGCAGTGTaGCCAGGAGGCTTCTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: TRQVVCIAYIGKPRASPASPRAV*PGGFCP Trigger: AGGACAGAAGCCTCCTGGCCACACTGCTCTGGGAGA...TGCTGGGCTGGCTCTGGGCTTTCCTATGTATGCTATGCATACTACCTGCCTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | ATAGCATACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGAGTCACCAAGGTGGGTaGAGAGGGCAACTCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: IAYIGKPRASPAPRTVWRSHQGG*RGQLRS Trigger: ACTTCTGAGTTGCCCTCTCCACCCACCTTGGTGACT...CCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTATGCTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | GTAGTATGCATAGCATACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGATACCATGGCCTGGCTaGCACTCACGACAGCACTTG | + |
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Preference number: 4 (lower is better) Translates to: VVCIAYIGKPRASPAPRTIPWPG*HSRQHL Trigger: CAAGTGCTGTCGTGAGTGCCAGCCAGGCCATGGTAT...CGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTATGCTATGCATACTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | AGGCATCAGGATATGGGTTGTCCGTGCCCCATAAAATCCACTCCTGTAGTAATGCAAGCTGTCACTGGCTaGGTGGCGGGTCTGCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: RHQDMGCPCPIKSTPVVMQAVTG*VAGLLS Trigger: GGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTG...CATTACTACAGGAGTGGATTTTATGGGGCACGGACAACCCATATCCTGATGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| 3UTR CAA 72 bp | CGGTGTGGAGGGTACTGGCAGGCATCAGGATATGGGTaGTCCGTGCCCCATAAAATCCACTCCTGTAGTAAT | + |
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Preference number: 4 (lower is better) Translates to: RCGGYWQASGYG*SVPHKIHSCSN Trigger: ATTACTACAGGAGTGGATTTTATGGGGCACGGACAACCCATATCCTGATGCCTGCCAGTACCCTCCACACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR TCA 90 bp | ATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCATGCAGGTATCATAATTaGCAGCTTCATTGTAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: IGKPRASPAPRTVWRVLACRYHN*QLHCRS Trigger: GCTTCTACAATGAAGCTGTCAATTATGATACCTGCA...TGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | AGGCATCAGGATATGGGTTGTCCGTGCCCCATAAAATCCACTCCTGTAGTAATGCAGGGCTTGCAGGCCTaGTTGTTGCCTGGAGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: RHQDMGCPCPIKSTPVVMQGLQA*LLPGEK Trigger: CTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTG...CATTACTACAGGAGTGGATTTTATGGGGCACGGACAACCCATATCCTGATGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | GTAGTATGCATAGCATACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGCAGATAAGGTACAATTaGTCCAGGGCTTGCAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: VVCIAYIGKPRASPAPRTQIRYN*SRACRP Trigger: AGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTG...CGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTATGCTATGCATACTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CCA 90 bp | AGGCATCAGGATATGGGTTGTCCGTGCCCCATAAAATCCACTCCTGTAGTAATGTCTGTGTGTTCCTCCTaGATCGGGGTCCTGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: RHQDMGCPCPIKSTPVVMSVCSS*IGVLKL Trigger: CAGCTTCAGGACCCCGATCCAGGAGGAACACACAGA...CATTACTACAGGAGTGGATTTTATGGGGCACGGACAACCCATATCCTGATGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR GCA 90 bp | AGGCATCAGGATATGGGTTGTCCGTGCCCCATAAAATCCACTCCTGTAGTAATGACAGTTGAGCCGCCTTaGTGTAACTCCAAGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: RHQDMGCPCPIKSTPVVMTVEPP*CNSKCE Trigger: CTCACACTTGGAGTTACAGCAAGGCGGCTCAACTGT...CATTACTACAGGAGTGGATTTTATGGGGCACGGACAACCCATATCCTGATGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 90 bp | GGCCTAGGAGAACAGCAAATGCAGGGCCCTCAGGAGTCACCAAGGTaGGTGGAGAGGGCAACTCAGAAGTCCTGGGCCAGACTGTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: GLGEQQMQGPQESPR*VERATQKSWARLWW Trigger: CCACCACAGTCTGGCCCAGGACTTCTGAGTTGCCCTCTCCACCCACCTTGGTGACTCCTGAGGGCCCTGCATTTGCTGTTCTCCTAGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS GCA 90 bp | GGTGGCGGGTCTGCTTTCCAGATAAGGTACAATTGGTCCAGGGCTTaGAGGCCTGGTTGTTGCCTGGAGAAAAGTGGCCAGGAGGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: GGGSAFQIRYNWSRA*RPGCCLEKSGQEGR Trigger: CCTGCCCTCCTGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS GCA 90 bp | TCCTCACAGACTGCGTCCAAGCTGTCACTGGCTGGGTGGCGGGTCTaGTTTCCAGATAAGGTACAATTGGTCCAGGGCTTGCAGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSQTASKLSLAGWRV*FPDKVQLVQGLQAW Trigger: CCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTGGACGCAGTCTGTGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 90 bp | TGGCCAGGAGGCTTCTGTCCTCACAGACTGCGTCCAAGCTGTCACTaGCTGGGTGGCGGGTCTGCTTTCCAGATAAGGTACAATTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: WPGGFCPHRLRPSCH*LGGGSAFQIRYNWS Trigger: GGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTGGACGCAGTCTGTGAGGACAGAAGCCTCCTGGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CAA 90 bp | AAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCAGGCATCCTTCCACTTCGATGGTaGCACTGTGTACACTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: KPRASPAPRTVWRVLAGILPLRW*HCVHCL Trigger: CAAGCAGTGTACACAGTGCAACCATCGAAGTGGAAG...GATGCCTGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CAA 90 bp | TACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGCAATTGGTCCAGGGCTaGCAGGCCTGGTTGTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: YIGKPRASPAPRTVWRVLQLVQG*QAWLLP Trigger: AGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTG...CAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CAA 90 bp | ATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGGCACCAGACTGTGGTGGATaGGACAGTGGTTGGCCTGAA | + |
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Preference number: 5 (lower is better) Translates to: IGKPRASPAPRTVWRVLAPDCGG*DSGWPE Trigger: TTCAGGCCAACCACTGTCCAATCCACCACAGTCTGG...TGCCAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 90 bp | TGTCACTGGCTGGGTGGCGGGTCTGCTTTCCAGATAAGGTACAATTaGTCCAGGGCTTGCAGGCCTGGTTGTTGCCTGGAGAAAAGTGGC | + |
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Preference number: 5 (lower is better) Translates to: CHWLGGGSAFQIRYN*SRACRPGCCLEKSG Trigger: GCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 90 bp | AGGCTTCTGTCCTCACAGACTGCGTCCAAGCTGTCACTGGCTGGGTaGCGGGTCTGCTTTCCAGATAAGGTACAATTGGTCCAGGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: RLLSSQTASKLSLAG*RVCFPDKVQLVQGL Trigger: CAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTGGACGCAGTCTGTGAGGACAGAAGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CAA 90 bp | TACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGTTGCAGGCCTGGTTGTaGCCTGGAGAAAAGTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: YIGKPRASPAPRTVWRVLLQAWL*PGEKWP Trigger: TGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAA...CAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CAA 90 bp | TACATAGGAAAGCCCAGAGCCAGCCCAGCACCTAGAACGGTGTGGAGGGTACTGCCAGATAAGGTACAATaGGTCCAGGGCTTGCAGGCC | + |
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Preference number: 5 (lower is better) Translates to: YIGKPRASPAPRTVWRVLPDKVQ*VQGLQA Trigger: GGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGG...CAGTACCCTCCACACCGTTCTAGGTGCTGGGCTGGCTCTGGGCTTTCCTATGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 90 bp | GTCAACTCCAAGCTTGTAGCCGCTGTCCTGCCGAGGTTGGGTGCCTaGTCTACATCTGCAGACAGTATCCTGAGTAGGTGTGCAATTCTG | + |
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Preference number: 5 (lower is better) Translates to: VNSKLVAAVLPRLGA*STSADSILSRCAIL Trigger: CAGAATTGCACACCTACTCAGGATACTGTCTGCAGATGTAGACCAGGCACCCAACCTCGGCAGGACAGCGGCTACAAGCTTGGAGTTGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CAA 90 bp | AGGCATCAGGATATGGGTTGTCCGTGCCCCATAAAATCCACTCCTGTAGTAATGGGCTTGCAGGCCTGGTaGTTGCCTGGAGAAAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: RHQDMGCPCPIKSTPVVMGLQAW*LPGEKW Trigger: CCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCC...CATTACTACAGGAGTGGATTTTATGGGGCACGGACAACCCATATCCTGATGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAGGTAGTATGCATAGCATACATAGGAAAGCCCAGAGCCAGCCCAGCAGGTGTGCAATTCTGCTaGAGTTCACTTCCACTTCGA | + |
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Preference number: 5 (lower is better) Translates to: TRQVVCIAYIGKPRASPAGVQFC*SSLPLR Trigger: TCGAAGTGGAAGTGAACTCAAGCAGAATTGCACACC...TGCTGGGCTGGCTCTGGGCTTTCCTATGTATGCTATGCATACTACCTGCCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | AGTCCTGGGCCAGACTGTGGTGGATTGGACAGTGGTTaGCCTGAATGTAGGGCGCTGGGTCTCCCAGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SPGPDCGGLDSG*PECRALGLPEQ Trigger: CTGCTCTGGGAGACCCAGCGCCCTACATTCAGGCCAACCACTGTCCAATCCACCACAGTCTGGCCCAGGACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | CCTGGTATGATCACAGCGGCTCACCATACCATGGCCTaGCTGGCACTCACGACAGCACTTGTGACCACTGGG | + |
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Preference number: 6 (lower is better) Translates to: PGMITAAHHTMA*LALTTALVTTG Trigger: CCCAGTGGTCACAAGTGCTGTCGTGAGTGCCAGCCAGGCCATGGTATGGTGAGCCGCTGTGATCATACCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | AGCAAATGCAGGGCCCTCAGGAGTCACCAAGGTGGGTaGAGAGGGCAACTCAGAAGTCCTGGGCCAGACTGT | + |
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Preference number: 6 (lower is better) Translates to: SKCRALRSHQGG*RGQLRSPGPDC Trigger: ACAGTCTGGCCCAGGACTTCTGAGTTGCCCTCTCCACCCACCTTGGTGACTCCTGAGGGCCCTGCATTTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | GAACAGCAAATGCAGGGCCCTCAGGAGTCACCAAGGTaGGTGGAGAGGGCAACTCAGAAGTCCTGGGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: EQQMQGPQESPR*VERATQKSWAR Trigger: TCTGGCCCAGGACTTCTGAGTTGCCCTCTCCACCCACCTTGGTGACTCCTGAGGGCCCTGCATTTGCTGTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CAA 90 bp | GGGTGGCGGGTCTGCTTTCCAGATAAGGTACAATTGGTCCAGGGCTaGCAGGCCTGGTTGTTGCCTGGAGAAAAGTGGCCAGGAGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: GWRVCFPDKVQLVQG*QAWLLPGEKWPGGQ Trigger: CTGCCCTCCTGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | ACAATTGGTCCAGGGCTTGCAGGCCTGGTTGTTGCCTaGAGAAAAGTGGCCAGGAGGGCAGGGAACACAGTC | + |
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Preference number: 6 (lower is better) Translates to: TIGPGLAGLVVA*RKVARRAGNTV Trigger: GACTGTGTTCCCTGCCCTCCTGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | CTGGGTGGCGGGTCTGCTTTCCAGATAAGGTACAATTaGTCCAGGGCTTGCAGGCCTGGTTGTTGCCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LGGGSAFQIRYN*SRACRPGCCLE Trigger: CTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | GGCTTCTGTCCTCACAGACTGCGTCCAAGCTGTCACTaGCTGGGTGGCGGGTCTGCTTTCCAGATAAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: GFCPHRLRPSCH*LGGGSAFQIRY Trigger: GTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTGGACGCAGTCTGTGAGGACAGAAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CAA 72 bp | GCTGGGTGGCGGGTCTGCTTTCCAGATAAGGTACAATaGGTCCAGGGCTTGCAGGCCTGGTTGTTGCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: AGWRVCFPDKVQ*VQGLQAWLLPG Trigger: TCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CAA 90 bp | CTGTCACTGGCTGGGTGGCGGGTCTGCTTTCCAGATAAGGTACAATaGGTCCAGGGCTTGCAGGCCTGGTTGTTGCCTGGAGAAAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: LSLAGWRVCFPDKVQ*VQGLQAWLLPGEKW Trigger: CCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS GCA 72 bp | ACTGCGTCCAAGCTGTCACTGGCTGGGTGGCGGGTCTaGTTTCCAGATAAGGTACAATTGGTCCAGGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: TASKLSLAGWRV*FPDKVQLVQGL Trigger: CAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGACCCGCCACCCAGCCAGTGACAGCTTGGACGCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | CCAGATAAGGTACAATTGGTCCAGGGCTTGCAGGCCTaGTTGTTGCCTGGAGAAAAGTGGCCAGGAGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: PDKVQLVQGLQA*LLPGEKWPGGQ Trigger: CTGCCCTCCTGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CAA 72 bp | GTCAACTCCAAGCTTGTAGCCGCTGTCCTGCCGAGGTaGGGTGCCTGGTCTACATCTGCAGACAGTATCCTG | + |
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Preference number: 6 (lower is better) Translates to: VNSKLVAAVLPR*GAWSTSADSIL Trigger: CAGGATACTGTCTGCAGATGTAGACCAGGCACCCAACCTCGGCAGGACAGCGGCTACAAGCTTGGAGTTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CAA 90 bp | GGGAACACAGTCAACTCCAAGCTTGTAGCCGCTGTCCTGCCGAGGTaGGGTGCCTGGTCTACATCTGCAGACAGTATCCTGAGTAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: GNTVNSKLVAAVLPR*GAWSTSADSILSRC Trigger: ACACCTACTCAGGATACTGTCTGCAGATGTAGACCAGGCACCCAACCTCGGCAGGACAGCGGCTACAAGCTTGGAGTTGACTGTGTTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | AAGCTTGTAGCCGCTGTCCTGCCGAGGTTGGGTGCCTaGTCTACATCTGCAGACAGTATCCTGAGTAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: KLVAAVLPRLGA*STSADSILSRC Trigger: ACACCTACTCAGGATACTGTCTGCAGATGTAGACCAGGCACCCAACCTCGGCAGGACAGCGGCTACAAGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CCA 72 bp | TTGGCCAGAGTAAAGTGTGCGTCTGTGTGTTCCTCCTaGATCGGGGTCCTGAAGCTGTTTCCCCAACAAGGT | + |
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Preference number: 6 (lower is better) Translates to: LARVKCASVCSS*IGVLKLFPQQG Trigger: ACCTTGTTGGGGAAACAGCTTCAGGACCCCGATCCAGGAGGAACACACAGACGCACACTTTACTCTGGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS CAA 72 bp | GTCTGCTTTCCAGATAAGGTACAATTGGTCCAGGGCTaGCAGGCCTGGTTGTTGCCTGGAGAAAAGTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: VCFPDKVQLVQG*QAWLLPGEKWP Trigger: TGGCCACTTTTCTCCAGGCAACAACCAGGCCTGCAAGCCCTGGACCAATTGTACCTTATCTGGAAAGCAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS TCA 72 bp | GGTTGGGTGCCTGGTCTACATCTGCAGACAGTATCCTaGGTAGGTGTGCAATTCTGCTTGAGTTCACTTCCA | + |
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Preference number: 6 (lower is better) Translates to: GWVPGLHLQTVS*VGVQFCLSSLP Trigger: TGGAAGTGAACTCAAGCAGAATTGCACACCTACTCAGGATACTGTCTGCAGATGTAGACCAGGCACCCAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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| CDS TCA 72 bp | GGTTGCACTGTGTACACTGCTTGCAGGTATCATAATTaGCAGCTTCATTGTAGAAGCCAGTCTCACACGGAT | + |
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Preference number: 6 (lower is better) Translates to: GCTVYTACRYHN*QLHCRSQSHTD Trigger: ATCCGTGTGAGACTGGCTTCTACAATGAAGCTGTCAATTATGATACCTGCAAGCAGTGTACACAGTGCAACC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030952.6 |
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