Pregenerated sensors for TNFRSF1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030341Ensembl transcript IDs: ENSMUST00000032491.15, ENSMUST00000125880.8, ENSMUST00000130257.8, ENSMUST00000144524.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGAAACCCACTGAGGAGGCCCTGAGAAGCTTGGCTTGGGCCCTGTaGATCCCAAGTGGGCACCAGATACATTGTGCCTTTCCTCTACAA | + |
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Preference number: 1 (lower is better) Translates to: QKPTEEALRSLAWAL*IPSGHQIHCAFPLQ Trigger: TTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACTTGGGATGCACAGGGCCCAAGCCAAGCTTCTCAGGGCCTCCTCAGTGGGTTTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CCA 90 bp | AAAAAGGCCCAGAAACCCACTGAGGAGGCCCTGAGAAGCTTGGCTTaGGCCCTGTGCATCCCAAGTGGGCACCAGATACATTGTGCCTTT | + |
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Preference number: 1 (lower is better) Translates to: KKAQKPTEEALRSLA*ALCIPSGHQIHCAF Trigger: AAAGGCACAATGTATCTGGTGCCCACTTGGGATGCACAGGGCCCAAGCCAAGCTTCTCAGGGCCTCCTCAGTGGGTTTCTGGGCCTTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CCA 90 bp | TACATTGTGCCTTTCCTCTACAATCCTGTCTTTGGCACCCTCAGCTaGCCAGGAGCTGATGGTACATCTCCCTGCCACTCACAAGTGGCT | + |
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Preference number: 1 (lower is better) Translates to: YIVPFLYNPVFGTLS*PGADGTSPCHSQVA Trigger: AGCCACTTGTGAGTGGCAGGGAGATGTACCATCAGCTCCTGGCCAGCTGAGGGTGCCAAAGACAGGATTGTAGAGGAAAGGCACAATGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CCA 90 bp | CGGCTGAGAAAAGCTATGTACACCAAGTTGGTAGCACCAAGGAAGTaGCTACCAGCTCGAGCCTTCCCCTTAGAGACCTTTGCCCACTTT | + |
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Preference number: 1 (lower is better) Translates to: RLRKAMYTKLVAPRK*LPARAFPLETFAHF Trigger: AAAGTGGGCAAAGGTCTCTAAGGGGAAGGCTCGAGCTGGTAGCCACTTCCTTGGTGCTACCAACTTGGTGTACATAGCTTTTCTCAGCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR TCA 90 bp | ATACAAAGATTGCTTATCAAAAGTGAAAAAGGCCCAGAAACCCACTaGGGAGGCCCTGAGAAGCTTGGCTTGGGCCCTGTGCATCCCAAG | + |
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Preference number: 1 (lower is better) Translates to: IQRLLIKSEKGPETH*GGPEKLGLGPVHPK Trigger: CTTGGGATGCACAGGGCCCAAGCCAAGCTTCTCAGGGCCTCCTCAGTGGGTTTCTGGGCCTTTTTCACTTTTGATAAGCAATCTTTGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR TCA 90 bp | GAGGAGGTAGGCACAACTTCATACACTCCTCATTTTTCTTGCAGCTaGTATTCTCTCCTGTCACCTTTACAAGACGGGGTTCCAGAGCTT | + |
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Preference number: 1 (lower is better) Translates to: EEVGTTSYTPHFSCS*YSLLSPLQDGVPEL Trigger: AAGCTCTGGAACCCCGTCTTGTAAAGGTGACAGGAGAGAATATCAGCTGCAAGAAAAATGAGGAGTGTATGAAGTTGTGCCTACCTCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| 3UTR CAA 90 bp | GGCTCAGGCAGTCCTCGGCGGCTGAGAAAAGCTATGTACACCAAGTaGGTAGCACCAAGGAAGTGGCTACCAGCTCGAGCCTTCCCCTTA | + |
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Preference number: 2 (lower is better) Translates to: GSGSPRRLRKAMYTK*VAPRKWLPARAFPL Trigger: TAAGGGGAAGGCTCGAGCTGGTAGCCACTTCCTTGGTGCTACCAACTTGGTGTACATAGCTTTTCTCAGCCGCCGAGGACTGCCTGAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CAA 90 bp | AAGTGGGCACCAGATACATTGTGCCTTTCCTCTACAATCCTGTCTTaGGCACCCTCAGCTGGCCAGGAGCTGATGGTACATCTCCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: KWAPDTLCLSSTILS*APSAGQELMVHLPA Trigger: GGCAGGGAGATGTACCATCAGCTCCTGGCCAGCTGAGGGTGCCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR-3UTR CCA 90 bp | AGTGGGCACCAGATACATTGTGCCTTTCCTCTACAATCCTGTCTTTGGCACCCTCCTGCCACTCACAAGTaGCTGGCTCAGGCAGTCCTC | + |
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Preference number: 2 (lower is better) Translates to: SGHQIHCAFPLQSCLWHPPATHK*LAQAVL Trigger: GAGGACTGCCTGAGCCAGCCACTTGTGAGTGGCAGG...AGGGTGCCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CAA 90 bp | GCAAGCGGAGGAGGTAGGCACAACTTCATACACTCCTCATTTTTCTaGCAGCTGATATTCTCTCCTGTCACCTTTACAAGACGGGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: ASGGGRHNFIHSSFF*QLIFSPVTFTRRGS Trigger: GGAACCCCGTCTTGTAAAGGTGACAGGAGAGAATATCAGCTGCAAGAAAAATGAGGAGTGTATGAAGTTGTGCCTACCTCCTCCGCTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| 3UTR-3UTR CCA 90 bp | AGTGGGCACCAGATACATTGTGCCTTTCCTCTACAATCCTGTCTTTGGCACCCTGGGCATCTAGCAGAATaGTCCTTGAAGTTCAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: SGHQIHCAFPLQSCLWHPGHLAE*SLKFKS Trigger: GGACTTGAACTTCAAGGACCATTCTGCTAGATGCCC...AGGGTGCCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR-3UTR CAA 90 bp | TTTACAAGAGTCGAGGGCTCCAGCTGGAGACCCCGCCTTTCTATGCTTGTCCTTGAGGCCCTGAGAAGCTaGGCTTGGGCCCTGTGCATC | + |
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Preference number: 3 (lower is better) Translates to: FTRVEGSSWRPRLSMLVLEALRS*AWALCI Trigger: GATGCACAGGGCCCAAGCCAAGCTTCTCAGGGCCTC...AAGGACAAGCATAGAAAGGCGGGGTCTCCAGCTGGAGCCCTCGACTCTTGTAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR GCA 72 bp | ACTGAGGAGGCCCTGAGAAGCTTGGCTTGGGCCCTGTaGATCCCAAGTGGGCACCAGATACATTGTGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: TEEALRSLAWAL*IPSGHQIHCAF Trigger: AAAGGCACAATGTATCTGGTGCCCACTTGGGATGCACAGGGCCCAAGCCAAGCTTCTCAGGGCCTCCTCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR-3UTR CAA 90 bp | GGCACCCTCAGCTGGCCAGGAGCTGATGGTACATCTCCCTGCCACTCACAAGTGCTAGCAGAATGGTCCTaGAAGTTCAAGTCCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: GTLSWPGADGTSPCHSQVLAEWS*KFKSLF Trigger: GAAGAGGGACTTGAACTTCAAGGACCATTCTGCTAG...CACTTGTGAGTGGCAGGGAGATGTACCATCAGCTCCTGGCCAGCTGAGGGTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR TCA 72 bp | GCAACAGCACCGCAGTACCTGAGTCCTGGGGGTTTGTaGCATTTGCAAGCGGAGGAGGTAGGCACAACTTCA | + |
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Preference number: 3 (lower is better) Translates to: ATAPQYLSPGGL*HLQAEEVGTTS Trigger: TGAAGTTGTGCCTACCTCCTCCGCTTGCAAATGTCACAAACCCCCAGGACTCAGGTACTGCGGTGCTGTTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| 3UTR CCA 72 bp | CCTTTCCTCTACAATCCTGTCTTTGGCACCCTCAGCTaGCCAGGAGCTGATGGTACATCTCCCTGCCACTCA | + |
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Preference number: 3 (lower is better) Translates to: PFLYNPVFGTLS*PGADGTSPCHS Trigger: TGAGTGGCAGGGAGATGTACCATCAGCTCCTGGCCAGCTGAGGGTGCCAAAGACAGGATTGTAGAGGAAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR GCA 72 bp | GGCCCTGTGCATCCCAAGTGGGCACCAGATACATTGTaGCTTTCCTCTACAATCCTGTCTTTGGCACCCTCA | + |
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Preference number: 3 (lower is better) Translates to: GPVHPKWAPDTL*LSSTILSLAPS Trigger: TGAGGGTGCCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACTTGGGATGCACAGGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CCA 72 bp | CCTGAGAAGCTTGGCTTGGGCCCTGTGCATCCCAAGTaGGCACCAGATACATTGTGCCTTTCCTCTACAATC | + |
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Preference number: 3 (lower is better) Translates to: PEKLGLGPVHPK*APDTLCLSSTI Trigger: GATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACTTGGGATGCACAGGGCCCAAGCCAAGCTTCTCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR GCA 72 bp | GAGTCGAGGGCTCCAGCTGGAGACCCCGCCTTTCTATaGTTGTCCTTACCTTACACAGTTCATCCATTAGTG | + |
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Preference number: 3 (lower is better) Translates to: ESRAPAGDPAFL*LSLPYTVHPLV Trigger: CACTAATGGATGAACTGTGTAAGGTAAGGACAAGCATAGAAAGGCGGGGTCTCCAGCTGGAGCCCTCGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR GCA 72 bp | CTTTACAAGACGGGGTTCCAGAGCTTGAACTCAGGTTaGCAGACGTTTGCTGCAAGCGCTTTACCCGCTAAG | + |
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Preference number: 3 (lower is better) Translates to: LYKTGFQSLNSG*QTFAASALPAK Trigger: CTTAGCGGGTAAAGCGCTTGCAGCAAACGTCTGGCAACCTGAGTTCAAGCTCTGGAACCCCGTCTTGTAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| 3UTR-3UTR CAA 90 bp | AGCAAGATAACCAGGGGCAACAGCACCGCAGTACCTGAGTCCTGGGGGTTTGTGCACTCCTCATTTTTCTaGCAGCTGATATTCTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: SKITRGNSTAVPESWGFVHSSFF*QLIFSP Trigger: AGGAGAGAATATCAGCTGCAAGAAAAATGAGGAGTG...CACAAACCCCCAGGACTCAGGTACTGCGGTGCTGTTGCCCCTGGTTATCTTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| 3UTR CCA 72 bp | AAAGCTATGTACACCAAGTTGGTAGCACCAAGGAAGTaGCTACCAGCTCGAGCCTTCCCCTTAGAGACCTTT | + |
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Preference number: 3 (lower is better) Translates to: KAMYTKLVAPRK*LPARAFPLETF Trigger: AAAGGTCTCTAAGGGGAAGGCTCGAGCTGGTAGCCACTTCCTTGGTGCTACCAACTTGGTGTACATAGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR TCA 72 bp | GGCACAACTTCATACACTCCTCATTTTTCTTGCAGCTaGTATTCTCTCCTGTCACCTTTACAAGACGGGGTT | + |
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Preference number: 3 (lower is better) Translates to: GTTSYTPHFSCS*YSLLSPLQDGV Trigger: AACCCCGTCTTGTAAAGGTGACAGGAGAGAATATCAGCTGCAAGAAAAATGAGGAGTGTATGAAGTTGTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| CDS-3UTR TCA 90 bp | GCCTTCCCCTTAGAGACCTTTGCCCACTTTTCACCCACAGGGAGTAGGGCATCTTCCAGCATGCTGTACTaGGCCTCGCGCAGGCAGCGC | + |
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Preference number: 4 (lower is better) Translates to: AFPLETFAHFSPTGSRASSSMLY*ASRRQR Trigger: GCGCTGCCTGCGCGAGGCTCAGTACAGCATGCTGGA...AGATGCCCTACTCCCTGTGGGTGAAAAGTGGGCAAAGGTCTCTAAGGGGAAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR GCA 90 bp | CCAGGAGCTGATGGTACATCTCCCTGCCACTCACAAGTGGCTGGCTCAGGCAGTAGGCAGCGCCCGTTCTaGATCTCCAGCCTCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: PGADGTSPCHSQVAGSGSRQRPF*ISSLSI Trigger: GATCGAGAGGCTGGAGATGCAGAACGGGCGCTGCCT...ACTGCCTGAGCCAGCCACTTGTGAGTGGCAGGGAGATGTACCATCAGCTCCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR TCA 90 bp | GCACCCTCAGCTGGCCAGGAGCTGATGGTACATCTCCCTGCCACTCACAAGTGGAGTCCTGGGGGTTTGTaGCATTTGCAAGCGGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: APSAGQELMVHLPATHKWSPGGL*HLQAEE Trigger: CTCCTCCGCTTGCAAATGTCACAAACCCCCAGGACT...CCACTTGTGAGTGGCAGGGAGATGTACCATCAGCTCCTGGCCAGCTGAGGGTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | ATCCCAAGTGGGCACCAGATACATTGTGCCTTTCCTCTACAATCCTGTCTTTGGGCGGGAGGCGGGTCGTaGACGAGGGGGCGGGATTTC | + |
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Preference number: 4 (lower is better) Translates to: IPSGHQIHCAFPLQSCLWAGGGS*TRGRDF Trigger: GAAATCCCGCCCCCTCGTCCACGACCCGCCTCCCGC...CCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACTTGGGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR TCA 90 bp | CTCAGGCAGTCCTCGGCGGCTGAGAAAAGCTATGTACACCAAGTTGGTAGCACCGAGTCTTCCCATTTCTaGACAGAGGTGGGGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: LRQSSAAEKSYVHQVGSTESSHF*TEVGAG Trigger: GCCAGCCCCCACCTCTGTTCAGAAATGGGAAGACTC...GGTGCTACCAACTTGGTGTACATAGCTTTTCTCAGCCGCCGAGGACTGCCTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | GCACCCTCAGCTGGCCAGGAGCTGATGGTACATCTCCCTGCCACTCACAAGTGGGCAGTACCTGAGTCCTaGGGGTTTGTGACATTTGCA | + |
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Preference number: 4 (lower is better) Translates to: APSAGQELMVHLPATHKWAVPES*GFVTFA Trigger: TGCAAATGTCACAAACCCCCAGGACTCAGGTACTGC...CCACTTGTGAGTGGCAGGGAGATGTACCATCAGCTCCTGGCCAGCTGAGGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | GCCTTCCCCTTAGAGACCTTTGCCCACTTTTCACCCACAGGGAGTAGGGCATCTGTCAGCTCCCTGGGTTaGGACTACCTCACTGACAGG | + |
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Preference number: 4 (lower is better) Translates to: AFPLETFAHFSPTGSRASVSSLG*DYLTDR Trigger: CCTGTCAGTGAGGTAGTCCCAACCCAGGGAGCTGAC...AGATGCCCTACTCCCTGTGGGTGAAAAGTGGGCAAAGGTCTCTAAGGGGAAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | CCAGGAGCTGATGGTACATCTCCCTGCCACTCACAAGTGGCTGGCTCAGGCAGTCAGCCAGGTTCATCTTaGAAAGCACGAGGCCCACTA | + |
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Preference number: 4 (lower is better) Translates to: PGADGTSPCHSQVAGSGSQPGSS*KARGPL Trigger: TAGTGGGCCTCGTGCTTTCCAAGATGAACCTGGCTG...ACTGCCTGAGCCAGCCACTTGTGAGTGGCAGGGAGATGTACCATCAGCTCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR GCA 90 bp | CTCAGGCAGTCCTCGGCGGCTGAGAAAAGCTATGTACACCAAGTTGGTAGCACCCCTTTTCACACTCCCTaGAGACTGTATCCCGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: LRQSSAAEKSYVHQVGSTPFHTP*RLYPAL Trigger: CAGGGCGGGATACAGTCTGCAGGGAGTGTGAAAAGG...GGTGCTACCAACTTGGTGTACATAGCTTTTCTCAGCCGCCGAGGACTGCCTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | GCACCCTCAGCTGGCCAGGAGCTGATGGTACATCTCCCTGCCACTCACAAGTGGTACCTCACTGACAGGTaGCATGAAGTGCCAGTTACT | + |
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Preference number: 4 (lower is better) Translates to: APSAGQELMVHLPATHKWYLTDR*HEVPVT Trigger: AGTAACTGGCACTTCATGCCACCTGTCAGTGAGGTA...CCACTTGTGAGTGGCAGGGAGATGTACCATCAGCTCCTGGCCAGCTGAGGGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CAA 72 bp | AGTCCTCGGCGGCTGAGAAAAGCTATGTACACCAAGTaGGTAGCACCAAGGAAGTGGCTACCAGCTCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: SPRRLRKAMYTK*VAPRKWLPARA Trigger: GGCTCGAGCTGGTAGCCACTTCCTTGGTGCTACCAACTTGGTGTACATAGCTTTTCTCAGCCGCCGAGGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | TTGGTAGCACCAAGGAAGTGGCTACCAGCTCGAGCCTTCCCCTTAGAGACCTTTATTTCTGAACAGAGGTaGGGGCTGGCACGGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LVAPRKWLPARAFPLETFISEQR*GLARSR Trigger: TCTGCTCCGTGCCAGCCCCCACCTCTGTTCAGAAAT...AAAGGTCTCTAAGGGGAAGGCTCGAGCTGGTAGCCACTTCCTTGGTGCTACCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CAA 72 bp | TTGGGCCCTGTGCATCCCAAGTGGGCACCAGATACATaGTGCCTTTCCTCTACAATCCTGTCTTTGGCACCC | + |
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Preference number: 4 (lower is better) Translates to: LGPVHPKWAPDT*CLSSTILSLAP Trigger: GGGTGCCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACTTGGGATGCACAGGGCCCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR GCA 90 bp | TTGGCACCCTCAGCTGGCCAGGAGCTGATGGTACATCTCCCTGCCACTCACAAGCTTTGTGGCACTTGGTaGAGCAGATGGAATTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LAPSAGQELMVHLPATHKLCGTW*SRWNCS Trigger: AGAACAATTCCATCTGCTGCACCAAGTGCCACAAAG...CTTGTGAGTGGCAGGGAGATGTACCATCAGCTCCTGGCCAGCTGAGGGTGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CAA 72 bp | CACCCACAGGGAGTAGGGCATCTAGCAGAATGGTCCTaGAAGTTCAAGTCCCTCTTCCTAAGGTTGTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: HPQGVGHLAEWS*KFKSLFLRLWV Trigger: CACCCACAACCTTAGGAAGAGGGACTTGAACTTCAAGGACCATTCTGCTAGATGCCCTACTCCCTGTGGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR GCA 90 bp | AGTGGGCACCAGATACATTGTGCCTTTCCTCTACAATCCTGTCTTTGGCACCCTAGCCTCTCGATCTCGTaGTCGCTCAGCCCCATGAAA | + |
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Preference number: 4 (lower is better) Translates to: SGHQIHCAFPLQSCLWHPSLSIS*SLSPMK Trigger: TTTCATGGGGCTGAGCGAGCACGAGATCGAGAGGCT...AGGGTGCCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | GCATCCCAAGTGGGCACCAGATACATTGTGCCTTTCCTCTACAATCCTGTCTTTAGAGGGTCAGCTCCCTaGGTTGGGACTACCTCACTG | + |
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Preference number: 4 (lower is better) Translates to: ASQVGTRYIVPFLYNPVFRGSAP*VGTTSL Trigger: CAGTGAGGTAGTCCCAACCCAGGGAGCTGACCCTCT...AAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACTTGGGATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR GCA 90 bp | TTTACAAGAGTCGAGGGCTCCAGCTGGAGACCCCGCCTTTCTATGCTTGTCCTTTTTTCTTGCAGTGGCTaGAAGGGACGCACTCACTTT | + |
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Preference number: 4 (lower is better) Translates to: FTRVEGSSWRPRLSMLVLFSCSG*KGRTHF Trigger: AAAGTGAGTGCGTCCCTTGCAGCCACTGCAAGAAAA...AAGGACAAGCATAGAAAGGCGGGGTCTCCAGCTGGAGCCCTCGACTCTTGTAAA 51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| 3UTR CAA 72 bp | CCAGATACATTGTGCCTTTCCTCTACAATCCTGTCTTaGGCACCCTCAGCTGGCCAGGAGCTGATGGTACAT | + |
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Preference number: 4 (lower is better) Translates to: PDTLCLSSTILS*APSAGQELMVH Trigger: ATGTACCATCAGCTCCTGGCCAGCTGAGGGTGCCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | AAAGCTATGTACACCAAGTTGGTAGCACCAAGGAAGTGGCTACCAGCTCGAGCCAGAAAGAACCCTGCATaGCAGTTACACACGGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: KAMYTKLVAPRKWLPARARKNPA*QLHTVF Trigger: GAACACCGTGTGTAACTGCCATGCAGGGTTCTTTCT...GGCTCGAGCTGGTAGCCACTTCCTTGGTGCTACCAACTTGGTGTACATAGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | TCCTCGGCGGCTGAGAAAAGCTATGTACACCAAGTTGGTAGCACCAAGGAAGTGTCATTTTTCTTGCAGTaGCTGCAAGGGACGCACTCA | + |
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Preference number: 4 (lower is better) Translates to: SSAAEKSYVHQVGSTKEVSFFLQ*LQGTHS Trigger: TGAGTGCGTCCCTTGCAGCCACTGCAAGAAAAATGA...CACTTCCTTGGTGCTACCAACTTGGTGTACATAGCTTTTCTCAGCCGCCGAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CCA 90 bp | AGCGGAGGAGGTAGGCACAACTTCATACACTCCTCATTTTTCTTGCAGCTGATAAGAAAGAACCCTGCATaGCAGTTACACACGGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: SGGGRHNFIHSSFFLQLIRKNPA*QLHTVF Trigger: GAACACCGTGTGTAACTGCCATGCAGGGTTCTTTCT...TATCAGCTGCAAGAAAAATGAGGAGTGTATGAAGTTGTGCCTACCTCCTCCGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| CDS GCA 90 bp | GCGTGTCCTCGTGGCGCGGCGTGCGGCGCCGCCAGGCTTCCAGCATaGTGTACTGAGCCTCGCGCAGGCAGCGCCCGTTCTGCATCTCCA | + |
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Preference number: 5 (lower is better) Translates to: ACPRGAACGAARLPA*CTEPRAGSARSASP Trigger: TGGAGATGCAGAACGGGCGCTGCCTGCGCGAGGCTCAGTACAGCATGCTGGAAGCCTGGCGGCGCCGCACGCCGCGCCACGAGGACACGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS GCA 90 bp | AAAGCACGAGGCCCACTACTTCCAGCGTGTCCTCGTGGCGCGGCGTaGGGCGCCGCCAGGCTTCCAGCATGCTGTACTGAGCCTCGCGCA | + |
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Preference number: 5 (lower is better) Translates to: KARGPLLPACPRGAA*GAARLPACCTEPRA Trigger: TGCGCGAGGCTCAGTACAGCATGCTGGAAGCCTGGCGGCGCCGCACGCCGCGCCACGAGGACACGCTGGAAGTAGTGGGCCTCGTGCTTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS GCA 90 bp | GGACCGTGCACTTCCAGCAGCAGCCTGCCTTTGTGCCCTCCACCCTaGCCGACTCCCTCCAGGAGTAATGCCCCAGCAGGAACCCAACTC | + |
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Preference number: 5 (lower is better) Translates to: GPCTSSSSLPLCPPP*PTPSRSNAPAGTQL Trigger: GAGTTGGGTTCCTGCTGGGGCATTACTCCTGGAGGGAGTCGGGCAGGGTGGAGGGCACAAAGGCAGGCTGCTGCTGGAAGTGCACGGTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS GCA 90 bp | CACAGCATACAGAATCGCAAGGTCTGCATCTGGGGACAAGGACCGTaGACTTCCAGCAGCAGCCTGCCTTTGTGCCCTCCACCCTGCCCG | + |
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Preference number: 5 (lower is better) Translates to: HSIQNRKVCIWGQGP*TSSSSLPLCPPPCP Trigger: CGGGCAGGGTGGAGGGCACAAAGGCAGGCTGCTGCTGGAAGTGCACGGTCCTTGTCCCCAGATGCAGACCTTGCGATTCTGTATGCTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS CCA 90 bp | CAGGACGTTGCGGGTGGGCGGAGTCTTCCCATTTCTGAACAGAGGTaGGGGCTGGCACGGAGCAGAGTGATTCGTAGAGCAGAGGGTCAG | + |
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Preference number: 5 (lower is better) Translates to: QDVAGGRSLPISEQR*GLARSRVIRRAEGQ Trigger: CTGACCCTCTGCTCTACGAATCACTCTGCTCCGTGCCAGCCCCCACCTCTGTTCAGAAATGGGAAGACTCCGCCCACCCGCAACGTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000144524.2 |
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| CDS CCA 90 bp | TCAGAGCCTCGAGGATATTCTCCAGGCACCCAGCCAGGTTCATCTTaGAAAGCACGAGGCCCACTACTTCCAGCGTGTCCTCGTGGCGCG | + |
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Preference number: 5 (lower is better) Translates to: SEPRGYSPGTQPGSS*KARGPLLPACPRGA Trigger: CGCGCCACGAGGACACGCTGGAAGTAGTGGGCCTCGTGCTTTCCAAGATGAACCTGGCTGGGTGCCTGGAGAATATCCTCGAGGCTCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS CCA 90 bp | AGGCACGCCATCCACCACAGCATACAGAATCGCAAGGTCTGCATCTaGGGACAAGGACCGTGCACTTCCAGCAGCAGCCTGCCTTTGTGC | + |
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Preference number: 5 (lower is better) Translates to: RHAIHHSIQNRKVCI*GQGPCTSSSSLPLC Trigger: GCACAAAGGCAGGCTGCTGCTGGAAGTGCACGGTCCTTGTCCCCAGATGCAGACCTTGCGATTCTGTATGCTGTGGTGGATGGCGTGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS-3UTR CAA 90 bp | GCCTTCCCCTTAGAGACCTTTGCCCACTTTTCACCCACAGGGAGTAGGGCATCTCCAGCCAGGTTCATCTaGGAAAGCACGAGGCCCACT | + |
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Preference number: 5 (lower is better) Translates to: AFPLETFAHFSPTGSRASPARFI*ESTRPT Trigger: AGTGGGCCTCGTGCTTTCCAAGATGAACCTGGCTGG...AGATGCCCTACTCCCTGTGGGTGAAAAGTGGGCAAAGGTCTCTAAGGGGAAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS CCA 90 bp | CGTAAAGGTGCCCTTTTCACACTCCCTGCAGACTGTATCCCGCCCTaGGCTCGGACAGTCACTCACCAAGTAGGTTCCTTTGTGGCACTT | + |
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Preference number: 5 (lower is better) Translates to: RKGALFTLPADCIPP*ARTVTHQVGSFVAL Trigger: AAGTGCCACAAAGGAACCTACTTGGTGAGTGACTGTCCGAGCCCAGGGCGGGATACAGTCTGCAGGGAGTGTGAAAAGGGCACCTTTACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CAA 90 bp | CCTTTACAAGACGGGGTTCCAGAGCTTGAACTCAGGTTGCCAGACGTTTGCTGCCGTGTCCTTGTCAGCTaGGCAAGGAGAGATCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: PLQDGVPELELRLPDVCCRVLVS*ARRDLH Trigger: GTGGAGATCTCTCCTTGCCAAGCTGACAAGGACACG...GCAGCAAACGTCTGGCAACCTGAGTTCAAGCTCTGGAACCCCGTCTTGTAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| CDS TCA 90 bp | CTTTCTCTCAGAAAGAACCCTGCATGGCAGTTACACACGGTGTTCTaGGTCTCCTTACAGGGGATTGTCACGGTGCCGTTGAAGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: LSLRKNPAWQLHTVF*VSLQGIVTVPLKQG Trigger: CCCCTGCTTCAACGGCACCGTGACAATCCCCTGTAAGGAGACTCAGAACACCGTGTGTAACTGCCATGCAGGGTTCTTTCTGAGAGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032491.15 ENSMUST00000125880.8 ENSMUST00000144524.2 |
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| CDS CCA 90 bp | CCACACACCGTGTCCTTGTCAGCTTGGCAAGGAGAGATCTCCACCTaGGACATTTCTTTCCGACATGTCTTGCAACTGAGACACTGCCTG | + |
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Preference number: 5 (lower is better) Translates to: PHTVSLSAWQGEIST*DISFRHVLQLRHCL Trigger: CAGGCAGTGTCTCAGTTGCAAGACATGTCGGAAAGAAATGTCCCAGGTGGAGATCTCTCCTTGCCAAGCTGACAAGGACACGGTGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000125880.8 |
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| CDS-3UTR CAA 90 bp | TTTACAAGAGTCGAGGGCTCCAGCTGGAGACCCCGCCTTTCTATGCTTGTCCTTGTTCCTTTGTGGCACTaGGTGCAGCAGATGGAATTG | + |
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Preference number: 5 (lower is better) Translates to: FTRVEGSSWRPRLSMLVLVPLWH*VQQMEL Trigger: CAATTCCATCTGCTGCACCAAGTGCCACAAAGGAAC...AAGGACAAGCATAGAAAGGCGGGGTCTCCAGCTGGAGCCCTCGACTCTTGTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CAA 90 bp | ATCCCAAGTGGGCACCAGATACATTGTGCCTTTCCTCTACAATCCTGTCTTTGGCGTGTCCTTGTCAGCTaGGCAAGGAGAGATCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: IPSGHQIHCAFPLQSCLWRVLVS*ARRDLH Trigger: GTGGAGATCTCTCCTTGCCAAGCTGACAAGGACACG...CCAAAGACAGGATTGTAGAGGAAAGGCACAATGTATCTGGTGCCCACTTGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CAA 90 bp | AAAGCTATGTACACCAAGTTGGTAGCACCAAGGAAGTGGCTACCAGCTCGAGCCCTCACTCAGGTAGCGTaGGAACTGGTTCTCCTTACA | + |
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Preference number: 5 (lower is better) Translates to: KAMYTKLVAPRKWLPARALTQVA*ELVLLT Trigger: TGTAAGGAGAACCAGTTCCAACGCTACCTGAGTGAG...GGCTCGAGCTGGTAGCCACTTCCTTGGTGCTACCAACTTGGTGTACATAGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS-3UTR CAA 90 bp | AAAAGCTATGTACACCAAGTTGGTAGCACCAAGGAAGTGGCTACCAGCTCGAGCCACTCCTCATTTTTCTaGCAGTGGCTGCAAGGGACG | + |
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Preference number: 5 (lower is better) Translates to: KSYVHQVGSTKEVATSSSHSSFF*QWLQGT Trigger: CGTCCCTTGCAGCCACTGCAAGAAAAATGAGGAGTG...GCTCGAGCTGGTAGCCACTTCCTTGGTGCTACCAACTTGGTGTACATAGCTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS GCA 90 bp | GAGGTAGGCACAACTTCATACACTCCTCATTTTTCTTGCAGTGGCTaGAAGGGACGCACTCACTTTCTCTCAGAAAGAACCCTGCATGGC | + |
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Preference number: 5 (lower is better) Translates to: EVGTTSYTPHFSCSG*KGRTHFLSERTLHG Trigger: GCCATGCAGGGTTCTTTCTGAGAGAAAGTGAGTGCGTCCCTTGCAGCCACTGCAAGAAAAATGAGGAGTGTATGAAGTTGTGCCTACCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000144524.2 |
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| CDS CCA 90 bp | GTTCCTTTGTGGCACTTGGTGCAGCAGATGGAATTGTTCTTAGAATaGACATACTTTCCTTGGGGACACAAGCTATCCCTCTTCTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: VPLWHLVQQMELFLE*TYFPWGHKLSLFSR Trigger: CCGGGAGAAGAGGGATAGCTTGTGTCCCCAAGGAAAGTATGTCCATTCTAAGAACAATTCCATCTGCTGCACCAAGTGCCACAAAGGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000130257.8 |
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| CDS-3UTR CAA 90 bp | CAACTTCATACACTCCTCATTTTTCTTGCAGCTGATATTCTCTCCTGTCACCTTCTCACTCAGGTAGCGTaGGAACTGGTTCTCCTTACA | + |
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Preference number: 5 (lower is better) Translates to: QLHTLLIFLAADILSCHLLTQVA*ELVLLT Trigger: TGTAAGGAGAACCAGTTCCAACGCTACCTGAGTGAG...AAGGTGACAGGAGAGAATATCAGCTGCAAGAAAAATGAGGAGTGTATGAAGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125880.8 |
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| CDS GCA 72 bp | CGTGGCGCGGCGTGCGGCGCCGCCAGGCTTCCAGCATaGTGTACTGAGCCTCGCGCAGGCAGCGCCCGTTCT | + |
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Preference number: 6 (lower is better) Translates to: RGAACGAARLPA*CTEPRAGSARS Trigger: AGAACGGGCGCTGCCTGCGCGAGGCTCAGTACAGCATGCTGGAAGCCTGGCGGCGCCGCACGCCGCGCCACG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS GCA 72 bp | GGCCCACTACTTCCAGCGTGTCCTCGTGGCGCGGCGTaGGGCGCCGCCAGGCTTCCAGCATGCTGTACTGAG | + |
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Preference number: 6 (lower is better) Translates to: GPLLPACPRGAA*GAARLPACCTE Trigger: CTCAGTACAGCATGCTGGAAGCCTGGCGGCGCCGCACGCCGCGCCACGAGGACACGCTGGAAGTAGTGGGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS CCA 72 bp | GAAAGCACGAGGCCCACTACTTCCAGCGTGTCCTCGTaGCGCGGCGTGCGGCGCCGCCAGGCTTCCAGCATG | + |
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Preference number: 6 (lower is better) Translates to: ESTRPTTSSVSS*RGVRRRQASSM Trigger: CATGCTGGAAGCCTGGCGGCGCCGCACGCCGCGCCACGAGGACACGCTGGAAGTAGTGGGCCTCGTGCTTTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS GCA 72 bp | TCTGGGGACAAGGACCGTGCACTTCCAGCAGCAGCCTaGCTTTGTGCCCTCCACCCTGCCCGACTCCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SGDKDRALPAAA*LCALHPARLPP Trigger: TGGAGGGAGTCGGGCAGGGTGGAGGGCACAAAGGCAGGCTGCTGCTGGAAGTGCACGGTCCTTGTCCCCAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS GCA 72 bp | ACTTCCAGCAGCAGCCTGCCTTTGTGCCCTCCACCCTaGCCGACTCCCTCCAGGAGTAATGCCCCAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: TSSSSLPLCPPP*PTPSRSNAPAG Trigger: TCCTGCTGGGGCATTACTCCTGGAGGGAGTCGGGCAGGGTGGAGGGCACAAAGGCAGGCTGCTGCTGGAAGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS TCA 72 bp | TCAGGACGTTGCGGGTGGGCGGAGTCTTCCCATTTCTaGACAGAGGTGGGGGCTGGCACGGAGCAGAGTGAT | + |
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Preference number: 6 (lower is better) Translates to: SGRCGWAESSHF*TEVGAGTEQSD Trigger: ATCACTCTGCTCCGTGCCAGCCCCCACCTCTGTTCAGAAATGGGAAGACTCCGCCCACCCGCAACGTCCTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000144524.2 |
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| CDS CAA 90 bp | CTCAGAGCCTCGAGGATATTCTCCAGGCACCCAGCCAGGTTCATCTaGGAAAGCACGAGGCCCACTACTTCCAGCGTGTCCTCGTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: LRASRIFSRHPARFI*ESTRPTTSSVSSWR Trigger: GCGCCACGAGGACACGCTGGAAGTAGTGGGCCTCGTGCTTTCCAAGATGAACCTGGCTGGGTGCCTGGAGAATATCCTCGAGGCTCTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS CAA 90 bp | TCCAGGAGTAATGCCCCAGCAGGAACCCAACTCACTGTCAGGACGTaGCGGGTGGGCGGAGTCTTCCCATTTCTGAACAGAGGTGGGGGC | + |
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Preference number: 6 (lower is better) Translates to: SRSNAPAGTQLTVRT*RVGGVFPFLNRGGG Trigger: GCCCCCACCTCTGTTCAGAAATGGGAAGACTCCGCCCACCCGCAACGTCCTGACAGTGAGTTGGGTTCCTGCTGGGGCATTACTCCTGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS GCA 72 bp | CAGCGCCCGTTCTGCATCTCCAGCCTCTCGATCTCGTaGTCGCTCAGCCCCATGAAACGCATGAACTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: QRPFCISSLSIS*SLSPMKRMNSF Trigger: GAAGGAGTTCATGCGTTTCATGGGGCTGAGCGAGCACGAGATCGAGAGGCTGGAGATGCAGAACGGGCGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS GCA 72 bp | CAGAATCGCAAGGTCTGCATCTGGGGACAAGGACCGTaGACTTCCAGCAGCAGCCTGCCTTTGTGCCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: QNRKVCIWGQGP*TSSSSLPLCPP Trigger: TGGAGGGCACAAAGGCAGGCTGCTGCTGGAAGTGCACGGTCCTTGTCCCCAGATGCAGACCTTGCGATTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS CCA 72 bp | GCTGATGGGGGTACTGGAGACAGGAGAACTAAAGCCTaGGGTGCTGAAGCCCAGAGTGGGGTTGAAGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: ADGGTGDRRTKA*GAEAQSGVEAG Trigger: TCCGGCTTCAACCCCACTCTGGGCTTCAGCACCCCAGGCTTTAGTTCTCCTGTCTCCAGTACCCCCATCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000144524.2 |
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| CDS CCA 72 bp | CAGCCCCATGAAACGCATGAACTCCTTCCAGCGCGCTaGAGGCACGCCATCCACCACAGCATACAGAATCGC | + |
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Preference number: 6 (lower is better) Translates to: QPHETHELLPAR*RHAIHHSIQNR Trigger: GCGATTCTGTATGCTGTGGTGGATGGCGTGCCTCCAGCGCGCTGGAAGGAGTTCATGCGTTTCATGGGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000144524.2 |
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| CDS GCA 72 bp | CACGCCATCCACCACAGCATACAGAATCGCAAGGTCTaGATCTGGGGACAAGGACCGTGCACTTCCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: HAIHHSIQNRKV*IWGQGPCTSSS Trigger: GCTGCTGGAAGTGCACGGTCCTTGTCCCCAGATGCAGACCTTGCGATTCTGTATGCTGTGGTGGATGGCGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS GCA 72 bp | TGGGTTGGGACTACCTCACTGACAGGTGGCATGAAGTaGCAGTTACTAGGACCGAAGATGGGGCTGATGGGG | + |
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Preference number: 6 (lower is better) Translates to: WVGTTSLTGGMK*QLLGPKMGLMG Trigger: CCCCATCAGCCCCATCTTCGGTCCTAGTAACTGGCACTTCATGCCACCTGTCAGTGAGGTAGTCCCAACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000144524.2 |
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| CDS CCA 72 bp | GCCCTTTTCACACTCCCTGCAGACTGTATCCCGCCCTaGGCTCGGACAGTCACTCACCAAGTAGGTTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: ALFTLPADCIPP*ARTVTHQVGSF Trigger: AAAGGAACCTACTTGGTGAGTGACTGTCCGAGCCCAGGGCGGGATACAGTCTGCAGGGAGTGTGAAAAGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS CCA 72 bp | ATCCACCACAGCATACAGAATCGCAAGGTCTGCATCTaGGGACAAGGACCGTGCACTTCCAGCAGCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: IHHSIQNRKVCI*GQGPCTSSSSL Trigger: CAGGCTGCTGCTGGAAGTGCACGGTCCTTGTCCCCAGATGCAGACCTTGCGATTCTGTATGCTGTGGTGGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144524.2 |
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| CDS CAA 72 bp | TCGAGGATATTCTCCAGGCACCCAGCCAGGTTCATCTaGGAAAGCACGAGGCCCACTACTTCCAGCGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: SRIFSRHPARFI*ESTRPTTSSVS Trigger: GGACACGCTGGAAGTAGTGGGCCTCGTGCTTTCCAAGATGAACCTGGCTGGGTGCCTGGAGAATATCCTCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032491.15 |
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| CDS CAA 72 bp | TGGAACTGGTTCTCCTTACAGCCACACACCGTGTCCTaGTCAGCTTGGCAAGGAGAGATCTCCACCTGGGAC | + |
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Preference number: 6 (lower is better) Translates to: WNWFSLQPHTVS*SAWQGEISTWD Trigger: GTCCCAGGTGGAGATCTCTCCTTGCCAAGCTGACAAGGACACGGTGTGTGGCTGTAAGGAGAACCAGTTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000125880.8 |
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| CDS CAA 72 bp | GTCCACGCACTGGAAGTGTGTCTCACTCAGGTAGCGTaGGAACTGGTTCTCCTTACAGCCACACACCGTGTC | + |
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Preference number: 6 (lower is better) Translates to: VHALEVCLTQVA*ELVLLTATHRV Trigger: GACACGGTGTGTGGCTGTAAGGAGAACCAGTTCCAACGCTACCTGAGTGAGACACACTTCCAGTGCGTGGAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000125880.8 |
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| CDS TCA 72 bp | AGAAAGAACCCTGCATGGCAGTTACACACGGTGTTCTaGGTCTCCTTACAGGGGATTGTCACGGTGCCGTTG | + |
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Preference number: 6 (lower is better) Translates to: RKNPAWQLHTVF*VSLQGIVTVPL Trigger: CAACGGCACCGTGACAATCCCCTGTAAGGAGACTCAGAACACCGTGTGTAACTGCCATGCAGGGTTCTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032491.15 ENSMUST00000125880.8 ENSMUST00000144524.2 |
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| CDS CCA 72 bp | GTGTCCTTGTCAGCTTGGCAAGGAGAGATCTCCACCTaGGACATTTCTTTCCGACATGTCTTGCAACTGAGA | + |
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Preference number: 6 (lower is better) Translates to: VSLSAWQGEIST*DISFRHVLQLR Trigger: TCTCAGTTGCAAGACATGTCGGAAAGAAATGTCCCAGGTGGAGATCTCTCCTTGCCAAGCTGACAAGGACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000125880.8 |
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| CDS CAA 72 bp | GCAGATGGAATTGTTCTTAGAATGGACATACTTTCCTaGGGGACACAAGCTATCCCTCTTCTCCCGGTCACC | + |
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Preference number: 6 (lower is better) Translates to: ADGIVLRMDILS*GTQAIPLLPVT Trigger: GGTGACCGGGAGAAGAGGGATAGCTTGTGTCCCCAAGGAAAGTATGTCCATTCTAAGAACAATTCCATCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000130257.8 |
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| CDS CCA 72 bp | AGGCACAACTTCATACACTCCTCATTTTTCTTGCAGTaGCTGCAAGGGACGCACTCACTTTCTCTCAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: RHNFIHSSFFLQ*LQGTHSLSLRK Trigger: CTTTCTGAGAGAAAGTGAGTGCGTCCCTTGCAGCCACTGCAAGAAAAATGAGGAGTGTATGAAGTTGTGCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000144524.2 |
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| CDS GCA 72 bp | ACAACTTCATACACTCCTCATTTTTCTTGCAGTGGCTaGAAGGGACGCACTCACTTTCTCTCAGAAAGAACC | + |
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Preference number: 6 (lower is better) Translates to: TTSYTPHFSCSG*KGRTHFLSERT Trigger: GGTTCTTTCTGAGAGAAAGTGAGTGCGTCCCTTGCAGCCACTGCAAGAAAAATGAGGAGTGTATGAAGTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032491.15 ENSMUST00000144524.2 |
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