RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNFRSF17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022496

Ensembl transcript IDs: ENSMUST00000023140.6

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCAGGTGACAAGAATGGTTaGCCCCTCCTCCATGGCTGG +
Preference number: 4 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPGDKNG*PLLHGW
Trigger: CCAGCCATGGAGGAGGGGGCAACCATTCTTGTCACC...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR CCA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCACCCCTCCTCCATGGCTaGAAGCGGGAAGAAATGGTC +
Preference number: 4 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPPLLHG*KREEMV
Trigger: GACCATTTCTTCCCGCTTCCAGCCATGGAGGAGGGG...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR TCA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCACACCCGTTTTTGTGGTaGCAAGAATGGTTGCCCCCT +
Preference number: 4 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPHPFLW*QEWLPP
Trigger: AGGGGGCAACCATTCTTGTCACCACAAAAACGGGTG...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR GCA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCAGTAAGGCTGACAGGTTaGAGGAGGGTTGGAACATCG +
Preference number: 4 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPVRLTG*RRVGTS
Trigger: CGATGTTCCAACCCTCCTGCAACCTGTCAGCCTTAC...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR GCA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCACACAGTCCTCACAGGTaGACTCTTCCACTGTATACT +
Preference number: 4 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPHSPHR*TLPLYT
Trigger: AGTATACAGTGGAAGAGTGCACCTGTGAGGACTGTG...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR CCA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCATCCCTTTCACTGAACTaGTCACGCTTGGATCACAGT +
Preference number: 4 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPSLSLN*SRLDHS
Trigger: ACTGTGATCCAAGCGTGACCAGTTCAGTGAAAGGGA...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR GCA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCAATCCCCATGACACTTTaGAAAGCAGTTGGCACACTT +
Preference number: 4 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPIPMTL*KAVGTL
Trigger: AAGTGTGCCAACTGCTTTGCAAAGTGTCATGGGGAT...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CCA 90 bp GCCCCAAGAAGATCCAGAGCACCGTGTACGTCCCTTTCACTGAACTaGTCACGCTTGGATCACAGTAAGGCTGACAGGTTGCAGGAGGGT +
Preference number: 5 (lower is better)
Translates to: APRRSRAPCTSLSLN*SRLDHSKADRLQEG
Trigger: ACCCTCCTGCAACCTGTCAGCCTTACTGTGATCCAAGCGTGACCAGTTCAGTGAAAGGGACGTACACGGTGCTCTGGATCTTCTTGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS TCA 90 bp AAGCAGTTGGCACACTTGACTTGCCGTAGTCACCCGTTTTTGTGGTaGCAAGAATGGTTGCCCCCTCCTCCATGGCTGGAAGCGGGAAGA +
Preference number: 5 (lower is better)
Translates to: KQLAHLTCRSHPFLW*QEWLPPPPWLEAGR
Trigger: TCTTCCCGCTTCCAGCCATGGAGGAGGGGGCAACCATTCTTGTCACCACAAAAACGGGTGACTACGGCAAGTCAAGTGTGCCAACTGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CCA 90 bp ACAAGAATGGTTGCCCCCTCCTCCATGGCTGGAAGCGGGAAGAAATaGTCAGAATCCCCCTTGGGTTTGCTCTTGACACAGTCCTCACAG +
Preference number: 5 (lower is better)
Translates to: TRMVAPSSMAGSGKK*SESPLGLLLTQSSQ
Trigger: CTGTGAGGACTGTGTCAAGAGCAAACCCAAGGGGGATTCTGACCATTTCTTCCCGCTTCCAGCCATGGAGGAGGGGGCAACCATTCTTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CCA 90 bp TGGTCACGCTTGGATCACAGTAAGGCTGACAGGTTGCAGGAGGGTTaGAACATCGCAAGTGACACGGTTTGCAAGCATGCAGCAGACTGT +
Preference number: 5 (lower is better)
Translates to: WSRLDHSKADRLQEG*NIASDTVCKHAADC
Trigger: ACAGTCTGCTGCATGCTTGCAAACCGTGTCACTTGCGATGTTCCAACCCTCCTGCAACCTGTCAGCCTTACTGTGATCCAAGCGTGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR CAA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCAAAGCTGACCTGGGCTTaGAGGCTCGTCCTTCAGGGC +
Preference number: 5 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPKLTWA*RLVLQG
Trigger: GCCCTGAAGGACGAGCCTCAAAGCCCAGGTCAGCTT...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR CAA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCACCCTTGGGTTTGCTCTaGACACAGTCCTCACAGGTG +
Preference number: 5 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPPLGLL*TQSSQV
Trigger: CACCTGTGAGGACTGTGTCAAGAGCAAACCCAAGGG...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR CAA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCAAGTAAGGCTGACAGGTaGCAGGAGGGTTGGAACATC +
Preference number: 5 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPSKADR*QEGWNI
Trigger: GATGTTCCAACCCTCCTGCAACCTGTCAGCCTTACT...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR CAA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCACACTTTGCAAAGCAGTaGGCACACTTGACTTGCCGT +
Preference number: 5 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPHFAKQ*AHLTCR
Trigger: ACGGCAAGTCAAGTGTGCCAACTGCTTTGCAAAGTG...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS-3UTR CAA 90 bp ACATCTAAAACACCAGCTCTCCTGACAGAAGGTTCTCAAAGCAGCTTCACACCACATCCCCATGACACTTaGCAAAGCAGTTGGCACACT +
Preference number: 5 (lower is better)
Translates to: TSKTPALLTEGSQSSFTPHPHDT*QSSWHT
Trigger: AGTGTGCCAACTGCTTTGCAAAGTGTCATGGGGATG...TGGTGTGAAGCTGCTTTGAGAACCTTCTGTCAGGAGAGCTGGTGTTTTAGATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CAA 90 bp GTCGGCCTTGTCCAGCTGAGCCGATCCGTCAAGCTGACCTGGGCTTaGAGGCTCGTCCTTCAGGGCCTCGGGGTTCATCTTCCTCAGCAA +
Preference number: 6 (lower is better)
Translates to: VGLVQLSRSVKLTWA*RLVLQGLGVHLPQQ
Trigger: TTGCTGAGGAAGATGAACCCCGAGGCCCTGAAGGACGAGCCTCAAAGCCCAGGTCAGCTTGACGGATCGGCTCAGCTGGACAAGGCCGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CAA 72 bp GTCCAGCTGAGCCGATCCGTCAAGCTGACCTGGGCTTaGAGGCTCGTCCTTCAGGGCCTCGGGGTTCATCTT +
Preference number: 6 (lower is better)
Translates to: VQLSRSVKLTWA*RLVLQGLGVHL
Trigger: AAGATGAACCCCGAGGCCCTGAAGGACGAGCCTCAAAGCCCAGGTCAGCTTGACGGATCGGCTCAGCTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CCA 72 bp TGTGGTGACAAGAATGGTTGCCCCCTCCTCCATGGCTaGAAGCGGGAAGAAATGGTCAGAATCCCCCTTGGG +
Preference number: 6 (lower is better)
Translates to: CGDKNGCPLLHG*KREEMVRIPLG
Trigger: CCCAAGGGGGATTCTGACCATTTCTTCCCGCTTCCAGCCATGGAGGAGGGGGCAACCATTCTTGTCACCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CAA 90 bp CCCTCCTCCATGGCTGGAAGCGGGAAGAAATGGTCAGAATCCCCCTaGGGTTTGCTCTTGACACAGTCCTCACAGGTGCACTCTTCCACT +
Preference number: 6 (lower is better)
Translates to: PSSMAGSGKKWSESP*GLLLTQSSQVHSST
Trigger: AGTGGAAGAGTGCACCTGTGAGGACTGTGTCAAGAGCAAACCCAAGGGGGATTCTGACCATTTCTTCCCGCTTCCAGCCATGGAGGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS GCA 72 bp GCCGTAGTCACCCGTTTTTGTGGTGACAAGAATGGTTaGCCCCTCCTCCATGGCTGGAAGCGGGAAGAAATG +
Preference number: 6 (lower is better)
Translates to: AVVTRFCGDKNG*PLLHGWKREEM
Trigger: CATTTCTTCCCGCTTCCAGCCATGGAGGAGGGGGCAACCATTCTTGTCACCACAAAAACGGGTGACTACGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS TCA 72 bp GCACACTTGACTTGCCGTAGTCACCCGTTTTTGTGGTaGCAAGAATGGTTGCCCCCTCCTCCATGGCTGGAA +
Preference number: 6 (lower is better)
Translates to: AHLTCRSHPFLW*QEWLPPPPWLE
Trigger: TTCCAGCCATGGAGGAGGGGGCAACCATTCTTGTCACCACAAAAACGGGTGACTACGGCAAGTCAAGTGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CAA 72 bp GGAAGCGGGAAGAAATGGTCAGAATCCCCCTTGGGTTaGCTCTTGACACAGTCCTCACAGGTGCACTCTTCC +
Preference number: 6 (lower is better)
Translates to: GSGKKWSESPLG*LLTQSSQVHSS
Trigger: GGAAGAGTGCACCTGTGAGGACTGTGTCAAGAGCAAACCCAAGGGGGATTCTGACCATTTCTTCCCGCTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CAA 90 bp AGATCCAGAGCACCGTGTACGTCCCTTTCACTGAACTGGTCACGCTaGGATCACAGTAAGGCTGACAGGTTGCAGGAGGGTTGGAACATC +
Preference number: 6 (lower is better)
Translates to: RSRAPCTSLSLNWSR*DHSKADRLQEGWNI
Trigger: GATGTTCCAACCCTCCTGCAACCTGTCAGCCTTACTGTGATCCAAGCGTGACCAGTTCAGTGAAAGGGACGTACACGGTGCTCTGGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CCA 72 bp AGATCCAGAGCACCGTGTACGTCCCTTTCACTGAACTaGTCACGCTTGGATCACAGTAAGGCTGACAGGTTG +
Preference number: 6 (lower is better)
Translates to: RSRAPCTSLSLN*SRLDHSKADRL
Trigger: CAACCTGTCAGCCTTACTGTGATCCAAGCGTGACCAGTTCAGTGAAAGGGACGTACACGGTGCTCTGGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CAA 72 bp AACTGGTCACGCTTGGATCACAGTAAGGCTGACAGGTaGCAGGAGGGTTGGAACATCGCAAGTGACACGGTT +
Preference number: 6 (lower is better)
Translates to: NWSRLDHSKADR*QEGWNIASDTV
Trigger: AACCGTGTCACTTGCGATGTTCCAACCCTCCTGCAACCTGTCAGCCTTACTGTGATCCAAGCGTGACCAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CAA 90 bp TCCATGGCTGGAAGCGGGAAGAAATGGTCAGAATCCCCCTTGGGTTaGCTCTTGACACAGTCCTCACAGGTGCACTCTTCCACTGTATAC +
Preference number: 6 (lower is better)
Translates to: SMAGSGKKWSESPLG*LLTQSSQVHSSTVY
Trigger: GTATACAGTGGAAGAGTGCACCTGTGAGGACTGTGTCAAGAGCAAACCCAAGGGGGATTCTGACCATTTCTTCCCGCTTCCAGCCATGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CAA 90 bp CTTTCACTGAACTGGTCACGCTTGGATCACAGTAAGGCTGACAGGTaGCAGGAGGGTTGGAACATCGCAAGTGACACGGTTTGCAAGCAT +
Preference number: 6 (lower is better)
Translates to: LSLNWSRLDHSKADR*QEGWNIASDTVCKH
Trigger: ATGCTTGCAAACCGTGTCACTTGCGATGTTCCAACCCTCCTGCAACCTGTCAGCCTTACTGTGATCCAAGCGTGACCAGTTCAGTGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6
CDS CCA 72 bp TTGGATCACAGTAAGGCTGACAGGTTGCAGGAGGGTTaGAACATCGCAAGTGACACGGTTTGCAAGCATGCA +
Preference number: 6 (lower is better)
Translates to: LDHSKADRLQEG*NIASDTVCKHA
Trigger: TGCATGCTTGCAAACCGTGTCACTTGCGATGTTCCAACCCTCCTGCAACCTGTCAGCCTTACTGTGATCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023140.6