RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNFRSF13C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068105

Ensembl transcript IDs: ENSMUST00000089161.10, ENSMUST00000109535.3, ENSMUST00000229984.2, ENSMUST00000231049.2

Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTaGCGGGCACCGGGACGCTGTGGCGTGGCAGGGCGCTGTCTGCAT +
Preference number: 1 (lower is better)
Translates to: GQLSWWSPARWSPVL*RAPGRCGVAGRCLH
Trigger: ATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR CCA 90 bp CTCGGTGGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGTGGCGTaGCAGGGCGCTGTCTGCATCTTCTTTGAGCGGAGGCCAGGTAGG +
Preference number: 1 (lower is better)
Translates to: LGGAQFCGGHRDAVA*QGAVCIFFERRPGR
Trigger: CCTACCTGGCCTCCGCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR CCA 90 bp ACCAGCTCGGTGGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGTaGCGTGGCAGGGCGCTGTCTGCATCTTCTTTGAGCGGAGGCCAG +
Preference number: 1 (lower is better)
Translates to: TSSVEPSSVAGTGTL*RGRALSASSLSGGQ
Trigger: CTGGCCTCCGCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR CCA 90 bp GCTGCTATTGCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTaGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGTGGCGTGGCA +
Preference number: 1 (lower is better)
Translates to: AAIALGQLSWWSPAR*SPVLWRAPGRCGVA
Trigger: TGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR CCA 90 bp TGGGTTCCAGCCTCCACTGCTGCTATTGCTCTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGGCGGGCACCG +
Preference number: 1 (lower is better)
Translates to: WVPASTAAIALGQLS*WSPARWSPVLWRAP
Trigger: CGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGGAGGCTGGAACCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR TCA 90 bp CTGTCTGCATCTTCTTTGAGCGGAGGCCAGGTAGGAGCTGAGGCATaGGGGGTTTCTTGCTGGACTCCTTCTGAAGTGTCTGGGGAGGCC +
Preference number: 1 (lower is better)
Translates to: LSASSLSGGQVGAEA*GVSCWTPSEVSGEA
Trigger: GGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCTCCGCTCAAAGAAGATGCAGACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGCTCTAGAGCAAATGAGTGCTGGTaGCTTTGGAGGCAAGGATGTTCCAGGGGCTGGAGTGACAGGTGG +
Preference number: 1 (lower is better)
Translates to: VCVCVCVCSRANECW*LWRQGCSRGWSDRW
Trigger: CCACCTGTCACTCCAGCCCCTGGAACATCCTTGCCTCCAAAGGCACCAGCACTCATTTGCTCTAGAGCACACACACACACACACACACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CCA 90 bp GGTGGTCTTAAGCTGCCAGATCTGAGTTCCGGGAAGCTGAACAACTaGAGTCCTCGGCTAGAACAGCACACAAACCGAACTGCTGAGCCA +
Preference number: 1 (lower is better)
Translates to: GGLKLPDLSSGKLNN*SPRLEQHTNRTAEP
Trigger: TGGCTCAGCAGTTCGGTTTGTGTGCTGTTCTAGCCGAGGACTCCAGTTGTTCAGCTTCCCGGAACTCAGATCTGGCAGCTTAAGACCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR TCA 90 bp TGTGTGTGTGTGTGTGTAGGATGTGCACGTGAATACAGATGCCCATaGAGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAGTTATGCTCA +
Preference number: 1 (lower is better)
Translates to: CVCVCVGCAREYRCP*SPEASGPLKQKLCS
Trigger: TGAGCATAACTTTTGCTTCAGGGGACCTGATGCCTCTGGACTTCATGGGCATCTGTATTCACGTGCACATCCTACACACACACACACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CAA 90 bp CTGGGTTCCAGCCTCCACTGCTGCTATTGCTCTGGGCCAGCTGTCTaGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGGCGGGCACC +
Preference number: 2 (lower is better)
Translates to: LGSSLHCCYCSGPAV*VVTSSVEPSSVAGT
Trigger: GGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGGAGGCTGGAACCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR-3UTR TCA 90 bp CCACTGCTGCTATTGCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACC +
Preference number: 2 (lower is better)
Translates to: PLLLLLWASCLGGHQLGGAVLSC*RHLQLT
Trigger: GGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGC...TCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR-3UTR TCA 90 bp CCACTGCTGCTATTGCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGATTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGT +
Preference number: 2 (lower is better)
Translates to: PLLLLLWASCLGGHQLGGLLDSF*SVWGGR
Trigger: ACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAA...TCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR-3UTR TCA 90 bp TATTGCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTAGGCCAGGTAGGAGCTaGGGCATGAGGGGTTTCTTG +
Preference number: 2 (lower is better)
Translates to: YCSGPAVLVVTSSVEPSSRPGRS*GMRGFL
Trigger: CAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCT...AGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR-3UTR TCA 90 bp CCTGGAACTTGCTATGTAGACCAGGATGGCCTCCAACTCAGTTACCTGCCTGCCTTCCAGGGGCTGGAGTaGCAGGTGGTCTTAAGCTGC +
Preference number: 2 (lower is better)
Translates to: PGTCYVDQDGLQLSYLPAFQGLE*QVVLSC
Trigger: GCAGCTTAAGACCACCTGTCACTCCAGCCCCTGGAA...GGCAGGCAGGTAACTGAGTTGGAGGCCATCCTGGTCTACATAGCAAGTTCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR-3UTR GCA 90 bp TCTGGCTGGTGGTCCAGAGCTGGCACACAGCAGGAGAGGGGCGTGTTCATTGTCATGAGCCACCCGCAGTaGATTCTGGGAATCAAACTC +
Preference number: 2 (lower is better)
Translates to: SGWWSRAGTQQERGVFIVMSHPQ*ILGIKL
Trigger: GAGTTTGATTCCCAGAATGCACTGCGGGTGGCTCAT...GACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR-3UTR CCA 90 bp GCTGGTGGTCCAGAGCTGGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTCTGACCCGCAGTGCATTCTaGGAATCAAACTCTCATCCT +
Preference number: 2 (lower is better)
Translates to: AGGPELAHSRRGACSLSLTRSAF*ESNSHP
Trigger: AGGATGAGAGTTTGATTCCCAGAATGCACTGCGGGT...CAGAGACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CAA 90 bp GGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTCTGCTTTCTCCTaGTATGTTAGGGGCTCAGTCCTGATGGCTTTACCTCCTCTTAGT +
Preference number: 2 (lower is better)
Translates to: GTQQERGVFIVSAFS*YVRGSVLMALPPLS
Trigger: ACTAAGAGGAGGTAAAGCCATCAGGACTGAGCCCCTAACATACAAGGAGAAAGCAGAGACAATGAACACGCCCCTCTCCTGCTGTGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR-3UTR TCA 90 bp GGGGAGTATTATTTTGAGACTTGGTCTCACCATTTAGCTCTGGTTAGCCTGGAAGAATACAGATGCCCATaGAGTCCAGAGGCATCAGGT +
Preference number: 2 (lower is better)
Translates to: GEYYFETWSHHLALVSLEEYRCP*SPEASG
Trigger: ACCTGATGCCTCTGGACTTCATGGGCATCTGTATTC...TTCCAGGCTAACCAGAGCTAAATGGTGAGACCAAGTCTCAAAATAATACTCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CCA 72 bp TCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTaGCGGGCACCGGGACGCTGTGGCGTGGCAGGGCGC +
Preference number: 3 (lower is better)
Translates to: SWWSPARWSPVL*RAPGRCGVAGR
Trigger: GCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR CCA 72 bp GCCCAGTTCTGTGGCGGGCACCGGGACGCTGTGGCGTaGCAGGGCGCTGTCTGCATCTTCTTTGAGCGGAGG +
Preference number: 3 (lower is better)
Translates to: AQFCGGHRDAVA*QGAVCIFFERR
Trigger: CCTCCGCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR CCA 72 bp GCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTaGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGT +
Preference number: 3 (lower is better)
Translates to: ALGQLSWWSPAR*SPVLWRAPGRC
Trigger: ACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR CCA 72 bp GTGGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGTaGCGTGGCAGGGCGCTGTCTGCATCTTCTTTGAGC +
Preference number: 3 (lower is better)
Translates to: VEPSSVAGTGTL*RGRALSASSLS
Trigger: GCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR-3UTR CAA 90 bp TCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGGCGGGCCGTCCTGAGCTGTaGACGCCACCTCCAGCTCAC +
Preference number: 3 (lower is better)
Translates to: SGPAVLVVTSSVEPSSVAGRPEL*TPPPAH
Trigger: GTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCC...CGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR CCA 72 bp GCCTCCACTGCTGCTATTGCTCTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGG +
Preference number: 3 (lower is better)
Translates to: ASTAAIALGQLS*WSPARWSPVLW
Trigger: CCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR TCA 72 bp CCTTCTGAAGTGTCTGGGGAGGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACCAGACTCACTAGACCC +
Preference number: 3 (lower is better)
Translates to: PSEVSGEAVLSC*RHLQLTRLTRP
Trigger: GGGTCTAGTGAGTCTGGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCCTCCCCAGACACTTCAGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR GCA 72 bp TCGGCTCTGAAGGTTCTAGGGCCCACATCTGATGATTaGCCTCTGGCTGGTGGTCCAGAGCTGGCACACAGC +
Preference number: 3 (lower is better)
Translates to: SALKVLGPTSDD*PLAGGPELAHS
Trigger: GCTGTGTGCCAGCTCTGGACCACCAGCCAGAGGGCAATCATCAGATGTGGGCCCTAGAACCTTCAGAGCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CCA 72 bp CATCTGATGATTGCCCTCTGGCTGGTGGTCCAGAGCTaGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTC +
Preference number: 3 (lower is better)
Translates to: HLMIALWLVVQS*HTAGEGRVHCL
Trigger: GAGACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGCCAGAGGGCAATCATCAGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CCA 72 bp TCCGTCACTGAAGGGCCAAGTTCTTTCCCAAGCTGTTaGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGG +
Preference number: 3 (lower is better)
Translates to: SVTEGPSSFPSC*VKSTSPVEIPG
Trigger: CCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGGAAAGAACTTGGCCCTTCAGTGACGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CCA 72 bp TGTGTGTGCTCTAGAGCAAATGAGTGCTGGTGCCTTTaGAGGCAAGGATGTTCCAGGGGCTGGAGTGACAGG +
Preference number: 3 (lower is better)
Translates to: CVCSRANECWCL*RQGCSRGWSDR
Trigger: CCTGTCACTCCAGCCCCTGGAACATCCTTGCCTCCAAAGGCACCAGCACTCATTTGCTCTAGAGCACACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CCA 72 bp GTGTGTGTGTGTGTGTGCTCTAGAGCAAATGAGTGCTaGTGCCTTTGGAGGCAAGGATGTTCCAGGGGCTGG +
Preference number: 3 (lower is better)
Translates to: VCVCVCSRANEC*CLWRQGCSRGW
Trigger: CCAGCCCCTGGAACATCCTTGCCTCCAAAGGCACCAGCACTCATTTGCTCTAGAGCACACACACACACACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR TCA 72 bp TCTTCTTTGAGCGGAGGCCAGGTAGGAGCTGAGGCATaGGGGGTTTCTTGCTGGACTCCTTCTGAAGTGTCT +
Preference number: 3 (lower is better)
Translates to: SSLSGGQVGAEA*GVSCWTPSEVS
Trigger: AGACACTTCAGAAGGAGTCCAGCAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCTCCGCTCAAAGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
3UTR GCA 72 bp TGTGTGTGTGTGTGTGTGTGCTCTAGAGCAAATGAGTaGTGGTGCCTTTGGAGGCAAGGATGTTCCAGGGGC +
Preference number: 3 (lower is better)
Translates to: CVCVCVCSRANE*WCLWRQGCSRG
Trigger: GCCCCTGGAACATCCTTGCCTCCAAAGGCACCAGCACTCATTTGCTCTAGAGCACACACACACACACACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR GCA 72 bp AGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAGTTATaGTCAGTAATGAGCCACCCGCAGTGCATTCTGGGA +
Preference number: 3 (lower is better)
Translates to: SPEASGPLKQKL*SVMSHPQCILG
Trigger: TCCCAGAATGCACTGCGGGTGGCTCATTACTGAGCATAACTTTTGCTTCAGGGGACCTGATGCCTCTGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CCA 72 bp AAGCTGCCAGATCTGAGTTCCGGGAAGCTGAACAACTaGAGTCCTCGGCTAGAACAGCACACAAACCGAACT +
Preference number: 3 (lower is better)
Translates to: KLPDLSSGKLNN*SPRLEQHTNRT
Trigger: AGTTCGGTTTGTGTGCTGTTCTAGCCGAGGACTCCAGTTGTTCAGCTTCCCGGAACTCAGATCTGGCAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CCA 72 bp CTCTGGTTAGCCTGGAACTTGCTATGTAGACCAGGATaGCCTCCAACTCAGTTACCTGCCTGCCTTTGCTTC +
Preference number: 3 (lower is better)
Translates to: LWLAWNLLCRPG*PPTQLPACLCF
Trigger: GAAGCAAAGGCAGGCAGGTAACTGAGTTGGAGGCCATCCTGGTCTACATAGCAAGTTCCAGGCTAACCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR TCA 72 bp GTGTGTGTAGGATGTGCACGTGAATACAGATGCCCATaGAGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAG +
Preference number: 3 (lower is better)
Translates to: VCVGCAREYRCP*SPEASGPLKQK
Trigger: CTTTTGCTTCAGGGGACCTGATGCCTCTGGACTTCATGGGCATCTGTATTCACGTGCACATCCTACACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR TCA 72 bp GTGTGTGTGTGTGTGTGTGTGTGTAGGATGTGCACGTaGATACAGATGCCCATGAAGTCCAGAGGCATCAGG +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCRMCT*IQMPMKSRGIR
Trigger: CCTGATGCCTCTGGACTTCATGGGCATCTGTATTCACGTGCACATCCTACACACACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR-3UTR CAA 90 bp AATGGAACGTTCTCAAGTCAAGAGCTAACACAAAAGCAATCTCATGTGGCCTGTTTCTTTCCCAAGCTGTaGGGTGAAGTCCACAAGCCC +
Preference number: 3 (lower is better)
Translates to: NGTFSSQELTQKQSHVACFFPKL*GEVHKP
Trigger: GGGCTTGTGGACTTCACCCAACAGCTTGGGAAAGAA...ACAGGCCACATGAGATTGCTTTTGTGTTAGCTCTTGACTTGAGAACGTTCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR GCA 72 bp AAGCAAAAGTTATGCTCAGTAATGAGCCACCCGCAGTaGATTCTGGGAATCAAACTCTCATCCTCTGGAATC +
Preference number: 3 (lower is better)
Translates to: KQKLCSVMSHPQ*ILGIKLSSSGI
Trigger: GATTCCAGAGGATGAGAGTTTGATTCCCAGAATGCACTGCGGGTGGCTCATTACTGAGCATAACTTTTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR-3UTR CAA 90 bp GGGGAGTATTATTTTGAGACTTGGTCTCACCATTTAGCTCTGGTTAGCCTGGAACTCCAGCCGCTAATTTaGACATTTTTAAGTGTGCAT +
Preference number: 3 (lower is better)
Translates to: GEYYFETWSHHLALVSLELQPLI*TFLSVH
Trigger: ATGCACACTTAAAAATGTCAAAATTAGCGGCTGGAG...TTCCAGGCTAACCAGAGCTAAATGGTGAGACCAAGTCTCAAAATAATACTCCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
CDS-3UTR TCA 90 bp TCTGTGGCGGGCACCGGGACGCTGTGGCGTGGCAGGGCGCTGTCTGCATCTTCTTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACC +
Preference number: 4 (lower is better)
Translates to: SVAGTGTLWRGRALSASSSKHSV*LHWVGT
Trigger: GGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGA...AGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS-3UTR CCA 90 bp TCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGGCGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGC +
Preference number: 4 (lower is better)
Translates to: SGPAVLVVTSSVEPSSVASDCTG*APSCPG
Trigger: GCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGA...CGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS-3UTR TCA 90 bp TGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTGAGCGCGGAGCCCTCCTaGGGCTGCAGAGCTGTCCCA +
Preference number: 4 (lower is better)
Translates to: WVKSTSPVEIPGFQPPLLSAEPS*GCRAVP
Trigger: TGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGCT...CAGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR TCA 90 bp AGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCAGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACC +
Preference number: 4 (lower is better)
Translates to: SCWVKSTSPVEIPGFQPPAVLSC*RHLQLT
Trigger: GGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGC...TGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR CCA 90 bp TGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGC +
Preference number: 4 (lower is better)
Translates to: WVKSTSPVEIPGFQPPLLSDCTG*APSCPG
Trigger: GCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGA...CAGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
3UTR CAA 72 bp AGCCTCCACTGCTGCTATTGCTCTGGGCCAGCTGTCTaGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTG +
Preference number: 4 (lower is better)
Translates to: SLHCCYCSGPAV*VVTSSVEPSSV
Trigger: CACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGGAGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS-3UTR CCA 90 bp AAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGC +
Preference number: 4 (lower is better)
Translates to: KLLGEVHKPSRDPWVPASSDCTG*APSCPG
Trigger: GCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGA...GGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR CCA 90 bp CCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: PSCWVKSTSPVEIPGFQPLGQLS*WSPARW
Trigger: CCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAG...AGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR CCA 90 bp TTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTCTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: LGEVHKPSRDPWVPASTALGQLS*WSPARW
Trigger: CCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAG...AGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR CCA 90 bp GCTGGTGGTCCAGAGCTGGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTCTGGATGTGGGAGACCATTaGCTCCAGGGTCAGCAGAGG +
Preference number: 4 (lower is better)
Translates to: AGGPELAHSRRGACSLSLDVGDH*LQGQQR
Trigger: CCTCTGCTGACCCTGGAGCCAATGGTCTCCCACATC...CAGAGACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR TCA 90 bp TGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACC +
Preference number: 4 (lower is better)
Translates to: CWVKSTSPVEIPGFQPPLSKHSV*LHWVGT
Trigger: GGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGA...CAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR TCA 90 bp CCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACC +
Preference number: 4 (lower is better)
Translates to: PSCWVKSTSPVEIPGFQPSKHSV*LHWVGT
Trigger: GGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGA...AGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR TCA 90 bp CTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACC +
Preference number: 4 (lower is better)
Translates to: LLGEVHKPSRDPWVPASTSKHSV*LHWVGT
Trigger: GGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGA...AGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR TCA 90 bp TTTCCCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACC +
Preference number: 4 (lower is better)
Translates to: FPKLLGEVHKPSRDPWVPAVLSC*RHLQLT
Trigger: GGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGC...TGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR TCA 90 bp TGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGAGGCTCCAGGCTGCTTaGGTGAGGGATGTGGGAGAC +
Preference number: 4 (lower is better)
Translates to: CWVKSTSPVEIPGFQPPLRLQAA*VRDVGD
Trigger: GTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCT...CAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR TCA 90 bp CCCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCAGGCCAGGTAGGAGCTaGGGCATGAGGGGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: PKLLGEVHKPSRDPWVPARPGRS*GMRGFL
Trigger: CAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCT...GGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR CCA 90 bp CCTGGAACTTGCTATGTAGACCAGGATGGCCTCCAACTCAGTTACCTGCCTGCCTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGC +
Preference number: 4 (lower is better)
Translates to: PGTCYVDQDGLQLSYLPASDCTG*APSCPG
Trigger: GCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGA...GGCAGGCAGGTAACTGAGTTGGAGGCCATCCTGGTCTACATAGCAAGTTCCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
CDS-3UTR TCA 90 bp TTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTAGGCCAGGTAGGAGCTaGGGCATGAGGGGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: LGEVHKPSRDPWVPASTARPGRS*GMRGFL
Trigger: CAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCT...AGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR TCA 90 bp AAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCTCCAGGCTGCTTGAGTaGGGGATGTGGGAGACCATT +
Preference number: 4 (lower is better)
Translates to: KLLGEVHKPSRDPWVPASSRLLE*GMWETI
Trigger: AATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGA...GGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR TCA 90 bp TTCCGGGAAGCTGAACAACTGGAGTCCTCGGCTAGAACAGCACACAAACCGAACTTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGT +
Preference number: 4 (lower is better)
Translates to: FREAEQLESSARTAHKPNLLDSF*SVWGGR
Trigger: ACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAA...GTTCGGTTTGTGTGCTGTTCTAGCCGAGGACTCCAGTTGTTCAGCTTCCCGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
CDS-3UTR TCA 90 bp TCTTTCCCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCTTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGT +
Preference number: 4 (lower is better)
Translates to: SFPSCWVKSTSPVEIPGFLLDSF*SVWGGR
Trigger: ACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAA...GAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR GCA 90 bp GCTGGTGGTCCAGAGCTGGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTCTGCTATCCCCATGCCTTTaGTTACTATGTCCAGTGTCC +
Preference number: 4 (lower is better)
Translates to: AGGPELAHSRRGACSLSLLSPCL*LLCPVS
Trigger: GGACACTGGACATAGTAAGCAAAGGCATGGGGATAG...CAGAGACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR GCA 90 bp TGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTGTCGCGCCTATCCCCATaGCTTTGCTTACTATGTCCA +
Preference number: 4 (lower is better)
Translates to: WVKSTSPVEIPGFQPPLLSRLSP*LCLLCP
Trigger: TGGACATAGTAAGCAAAGGCATGGGGATAGGCGCGA...CAGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR CCA 90 bp ATACAGATGCCCATGAAGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAGTTATGGGCCAGCTGTCTTGGTaGTCACCAGCTCGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: IQMPMKSRGIRSPEAKVMGQLSW*SPARWS
Trigger: GCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCC...CATAACTTTTGCTTCAGGGGACCTGATGCCTCTGGACTTCATGGGCATCTGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
CDS-3UTR CCA 90 bp AAGTTATGCTCAGTAATGAGCCACCCGCAGTGCATTCTGGGAATCAAACTCTCACTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: KLCSVMSHPQCILGIKLSLGQLS*WSPARW
Trigger: CCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAG...TGAGAGTTTGATTCCCAGAATGCACTGCGGGTGGCTCATTACTGAGCATAACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
CDS-3UTR TCA 90 bp AATGGAACGTTCTCAAGTCAAGAGCTAACACAAAAGCAATCTCATGTGGCCTGTGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACC +
Preference number: 4 (lower is better)
Translates to: NGTFSSQELTQKQSHVACAVLSC*RHLQLT
Trigger: GGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGC...ACAGGCCACATGAGATTGCTTTTGTGTTAGCTCTTGACTTGAGAACGTTCCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
3UTR CAA 72 bp CAGGAGAGGGGCGTGTTCATTGTCTCTGCTTTCTCCTaGTATGTTAGGGGCTCAGTCCTGATGGCTTTACCT +
Preference number: 4 (lower is better)
Translates to: QERGVFIVSAFS*YVRGSVLMALP
Trigger: AGGTAAAGCCATCAGGACTGAGCCCCTAACATACAAGGAGAAAGCAGAGACAATGAACACGCCCCTCTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
CDS-3UTR TCA 90 bp GGGGAGTATTATTTTGAGACTTGGTCTCACCATTTAGCTCTGGTTAGCCTGGAATTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGT +
Preference number: 4 (lower is better)
Translates to: GEYYFETWSHHLALVSLELLDSF*SVWGGR
Trigger: ACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAA...TTCCAGGCTAACCAGAGCTAAATGGTGAGACCAAGTCTCAAAATAATACTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
CDS-3UTR GCA 90 bp ATACAGATGCCCATGAAGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAGTTATGTTTTCCAGGGACTCTTaGTGGACTCCTTCTGAAGTG +
Preference number: 4 (lower is better)
Translates to: IQMPMKSRGIRSPEAKVMFSRDS*WTPSEV
Trigger: CACTTCAGAAGGAGTCCAGCAAGAGTCCCTGGAAAA...CATAACTTTTGCTTCAGGGGACCTGATGCCTCTGGACTTCATGGGCATCTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000089161.10
CDS GCA 90 bp GCGCGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTGGG +
Preference number: 5 (lower is better)
Translates to: ARSPPEAAELSQAPG*LQRVEALGLIALGG
Trigger: CCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS GCA 90 bp GCGCGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGAGTGAGGGATGTGGGAGACCATTGGCTCCAGGGTCAGCA +
Preference number: 5 (lower is better)
Translates to: ARSPPEAAELSQAPG*LSEGCGRPLAPGSA
Trigger: TGCTGACCCTGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS CCA 90 bp AGGCTGCTTGCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGACCCGGAGTC +
Preference number: 5 (lower is better)
Translates to: RLLAEGRSTRSDCTG*APSCPGSSGFGPGV
Trigger: GACTCCGGGTCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS TCA 90 bp GGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTTaGGTGAGGGATGTGGGAGACCATTGGCTCCAGGGTCAGCAGAGG +
Preference number: 5 (lower is better)
Translates to: GALLRLQSCPRLQAA*VRDVGDHWLQGQQR
Trigger: CCTCTGCTGACCCTGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS GCA 90 bp GCGCGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGTATGTCCAGTGTCCGGCGTGTGGAAGAGCTCACAGGACA +
Preference number: 5 (lower is better)
Translates to: ARSPPEAAELSQAPG*LYVQCPACGRAHRT
Trigger: TGTCCTGTGAGCTCTTCCACACGCCGGACACTGGACATACAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000231049.2
CDS CCA 90 bp AGTTTCTCACCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGACCCGGAGTC +
Preference number: 5 (lower is better)
Translates to: SFSPEGRSTRSDCTG*APSCPGSSGFGPGV
Trigger: GACTCCGGGTCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGGTGAGAAACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS GCA 90 bp AGGACACGCAGTTTCTCACCAGAGGGTCGAAGCACTCGGTCTGATTaGACTGGGTGGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGA +
Preference number: 5 (lower is better)
Translates to: RTRSFSPEGRSTRSD*TGWAPSCPGSSGFG
Trigger: TCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGGTGAGAAACTGCGTGTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS CCA 90 bp CCATTGGCTCCAGGGTCAGCAGAGGAGCATGCGGCGCTGGTAGGCTaGATACCTCAGGCAGGTCGCGCCTATCCCCATGCCTTTGCTTAC +
Preference number: 5 (lower is better)
Translates to: PLAPGSAEEHAALVG*IPQAGRAYPHAFAY
Trigger: GTAAGCAAAGGCATGGGGATAGGCGCGACCTGCCTGAGGTATCCAGCCTACCAGCGCCGCATGCTCCTCTGCTGACCCTGGAGCCAATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR CAA 90 bp TGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTGGGCCGTCCTGAGCTGTaGACGCCACCTCCAGCTCAC +
Preference number: 5 (lower is better)
Translates to: WVKSTSPVEIPGFQPPLLGRPEL*TPPPAH
Trigger: GTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCC...CAGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS TCA 90 bp TCACAGGACACGCAGTTTCTCACCAGAGGGTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACCGAGCTGTCCCGGCTCCTCTGGCTT +
Preference number: 5 (lower is better)
Translates to: SQDTQFLTRGSKHSV*LHWVGTELSRLLWL
Trigger: AAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGGTGAGAAACTGCGTGTCCTGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR CAA 90 bp AGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCAGGCCGTCCTGAGCTGTaGACGCCACCTCCAGCTCAC +
Preference number: 5 (lower is better)
Translates to: SCWVKSTSPVEIPGFQPPGRPEL*TPPPAH
Trigger: GTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCC...TGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR CAA 90 bp AGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCATCTGGGCCAGCTGTCTaGGTGGTCACCAGCTCGGTG +
Preference number: 5 (lower is better)
Translates to: SCWVKSTSPVEIPGFQPPSGPAV*VVTSSV
Trigger: CACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGA...TGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS-3UTR CAA 90 bp CTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTTCTGGGCCAGCTGTCTaGGTGGTCACCAGCTCGGTG +
Preference number: 5 (lower is better)
Translates to: LLGEVHKPSRDPWVPASTSGPAV*VVTSSV
Trigger: CACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGA...AGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS GCA 90 bp GGTAGGCTGGATACCTCAGGCAGGTCGCGCCTATCCCCATGCCTTTaGTTACTATGTCCAGTGTCCGGCGTGTGGAAGAGCTCACAGGAC +
Preference number: 5 (lower is better)
Translates to: GRLDTSGRSRLSPCL*LLCPVSGVWKSSQD
Trigger: GTCCTGTGAGCTCTTCCACACGCCGGACACTGGACATAGTAAGCAAAGGCATGGGGATAGGCGCGACCTGCCTGAGGTATCCAGCCTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR CAA 90 bp TCTTTCCCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCGGATGTGGGAGACCATaGGCTCCAGGGTCAGCAGAG +
Preference number: 5 (lower is better)
Translates to: SFPSCWVKSTSPVEIPGFGCGRP*APGSAE
Trigger: CTCTGCTGACCCTGGAGCCAATGGTCTCCCACATCC...GAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGGAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR CAA 90 bp TTCCGGGAAGCTGAACAACTGGAGTCCTCGGCTAGAACAGCACACAAACCGAACCAGGCTCCAGGCTGCTaGAGTGAGGGATGTGGGAGA +
Preference number: 5 (lower is better)
Translates to: FREAEQLESSARTAHKPNQAPGC*SEGCGR
Trigger: TCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTG...GTTCGGTTTGTGTGCTGTTCTAGCCGAGGACTCCAGTTGTTCAGCTTCCCGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS-3UTR CAA 90 bp AAGTTATGCTCAGTAATGAGCCACCCGCAGTGCATTCTGGGAATCAAACTCTCAGGCCGTCCTGAGCTGTaGACGCCACCTCCAGCTCAC +
Preference number: 5 (lower is better)
Translates to: KLCSVMSHPQCILGIKLSGRPEL*TPPPAH
Trigger: GTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCC...TGAGAGTTTGATTCCCAGAATGCACTGCGGGTGGCTCATTACTGAGCATAACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
CDS TCA 90 bp CTGTCTGCATCTTCTTTGAGCGGAGGCCAGGTAGGAGCTGAGGCATaGGGGGTTTCTGAGGAGGGTACAAAGACATTTTCCAGGGACTCT +
Preference number: 5 (lower is better)
Translates to: LSASSLSGGQVGAEA*GVSEEGTKTFSRDS
Trigger: AGAGTCCCTGGAAAATGTCTTTGTACCCTCCTCAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCTCCGCTCAAAGAAGATGCAGACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089161.10
CDS TCA 72 bp AGCAGCGCCACGTCGGGTCTCAGCGCGGAGCCCTCCTaGGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTT +
Preference number: 6 (lower is better)
Translates to: SSATSGLSAEPS*GCRAVPGSRLL
Trigger: AAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGCTGAGACCCGACGTGGCGCTGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS CCA 72 bp CCAGGGTCAGCAGAGGAGCATGCGGCGCTGGTAGGCTaGATACCTCAGGCAGGTCGCGCCTATCCCCATGCC +
Preference number: 6 (lower is better)
Translates to: PGSAEEHAALVG*IPQAGRAYPHA
Trigger: GGCATGGGGATAGGCGCGACCTGCCTGAGGTATCCAGCCTACCAGCGCCGCATGCTCCTCTGCTGACCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS CAA 90 bp CGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTaGCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTGGGCAC +
Preference number: 6 (lower is better)
Translates to: RSPPEAAELSQAPGC*QRVEALGLIALGGH
Trigger: GTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS CCA 72 bp CCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGA +
Preference number: 6 (lower is better)
Translates to: PEGRSTRSDCTG*APSCPGSSGFG
Trigger: TCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089161.10
ENSMUST00000109535.3
ENSMUST00000231049.2
CDS CCA 72 bp GCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGA +
Preference number: 6 (lower is better)
Translates to: AEGRSTRSDCTG*APSCPGSSGFG
Trigger: TCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS CAA 90 bp CGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTaGTATGTCCAGTGTCCGGCGTGTGGAAGAGCTCACAGGACACGC +
Preference number: 6 (lower is better)
Translates to: RSPPEAAELSQAPGC*YVQCPACGRAHRTR
Trigger: GCGTGTCCTGTGAGCTCTTCCACACGCCGGACACTGGACATACAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000231049.2
CDS CAA 90 bp CTGTCCCAGGCTCCAGGCTGCTTGAGTGAGGGATGTGGGAGACCATaGGCTCCAGGGTCAGCAGAGGAGCATGCGGCGCTGGTAGGCTGG +
Preference number: 6 (lower is better)
Translates to: LSQAPGCLSEGCGRP*APGSAEEHAALVGW
Trigger: CCAGCCTACCAGCGCCGCATGCTCCTCTGCTGACCCTGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS CAA 90 bp CGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTaGAGTGAGGGATGTGGGAGACCATTGGCTCCAGGGTCAGCAGAG +
Preference number: 6 (lower is better)
Translates to: RSPPEAAELSQAPGC*SEGCGRPLAPGSAE
Trigger: CTCTGCTGACCCTGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS GCA 72 bp CCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGTATGTCCAGTGTCCGGCGTGTGGAAGAGCT +
Preference number: 6 (lower is better)
Translates to: PPEAAELSQAPG*LYVQCPACGRA
Trigger: AGCTCTTCCACACGCCGGACACTGGACATACAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000231049.2
CDS GCA 72 bp CCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGAGTGAGGGATGTGGGAGACCATTGGCTCCA +
Preference number: 6 (lower is better)
Translates to: PPEAAELSQAPG*LSEGCGRPLAP
Trigger: TGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS GCA 72 bp CCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGCAGAGGGTCGAAGCACTCGGTCTGATTGCA +
Preference number: 6 (lower is better)
Translates to: PPEAAELSQAPG*LQRVEALGLIA
Trigger: TGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS CAA 72 bp CCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTaGCAGAGGGTCGAAGCACTCGGTCTGATTGCACTG +
Preference number: 6 (lower is better)
Translates to: PEAAELSQAPGC*QRVEALGLIAL
Trigger: CAGTGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229984.2
CDS GCA 72 bp GATACCTCAGGCAGGTCGCGCCTATCCCCATGCCTTTaGTTACTATGTCCAGTGTCCGGCGTGTGGAAGAGC +
Preference number: 6 (lower is better)
Translates to: DTSGRSRLSPCL*LLCPVSGVWKS
Trigger: GCTCTTCCACACGCCGGACACTGGACATAGTAAGCAAAGGCATGGGGATAGGCGCGACCTGCCTGAGGTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109535.3
CDS CCA 72 bp GGCTCCAGGCTGCTTGTATGTCCAGTGTCCGGCGTGTaGAAGAGCTCACAGGACACGCAGTTTCTCACCAGA +
Preference number: 6 (lower is better)
Translates to: GSRLLVCPVSGV*KSSQDTQFLTR
Trigger: TCTGGTGAGAAACTGCGTGTCCTGTGAGCTCTTCCACACGCCGGACACTGGACATACAAGCAGCCTGGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089161.10
ENSMUST00000231049.2
CDS TCA 72 bp AAAGACATTTTCCAGGGACTCTTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGTCCTGAGCTGTTGACG +
Preference number: 6 (lower is better)
Translates to: KDIFQGLLLDSF*SVWGGRPELLT
Trigger: CGTCAACAGCTCAGGACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAAGAGTCCCTGGAAAATGTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089161.10