Pregenerated sensors for TNFRSF13C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068105Ensembl transcript IDs: ENSMUST00000089161.10, ENSMUST00000109535.3, ENSMUST00000229984.2, ENSMUST00000231049.2
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | GGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTaGCGGGCACCGGGACGCTGTGGCGTGGCAGGGCGCTGTCTGCAT | + |
Preference number: 1 (lower is better) Translates to: GQLSWWSPARWSPVL*RAPGRCGVAGRCLH Trigger: ATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR CCA 90 bp | CTCGGTGGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGTGGCGTaGCAGGGCGCTGTCTGCATCTTCTTTGAGCGGAGGCCAGGTAGG | + |
Preference number: 1 (lower is better) Translates to: LGGAQFCGGHRDAVA*QGAVCIFFERRPGR Trigger: CCTACCTGGCCTCCGCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR CCA 90 bp | ACCAGCTCGGTGGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGTaGCGTGGCAGGGCGCTGTCTGCATCTTCTTTGAGCGGAGGCCAG | + |
Preference number: 1 (lower is better) Translates to: TSSVEPSSVAGTGTL*RGRALSASSLSGGQ Trigger: CTGGCCTCCGCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR CCA 90 bp | GCTGCTATTGCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTaGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGTGGCGTGGCA | + |
Preference number: 1 (lower is better) Translates to: AAIALGQLSWWSPAR*SPVLWRAPGRCGVA Trigger: TGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR CCA 90 bp | TGGGTTCCAGCCTCCACTGCTGCTATTGCTCTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGGCGGGCACCG | + |
Preference number: 1 (lower is better) Translates to: WVPASTAAIALGQLS*WSPARWSPVLWRAP Trigger: CGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGGAGGCTGGAACCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR TCA 90 bp | CTGTCTGCATCTTCTTTGAGCGGAGGCCAGGTAGGAGCTGAGGCATaGGGGGTTTCTTGCTGGACTCCTTCTGAAGTGTCTGGGGAGGCC | + |
Preference number: 1 (lower is better) Translates to: LSASSLSGGQVGAEA*GVSCWTPSEVSGEA Trigger: GGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCTCCGCTCAAAGAAGATGCAGACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR GCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGCTCTAGAGCAAATGAGTGCTGGTaGCTTTGGAGGCAAGGATGTTCCAGGGGCTGGAGTGACAGGTGG | + |
Preference number: 1 (lower is better) Translates to: VCVCVCVCSRANECW*LWRQGCSRGWSDRW Trigger: CCACCTGTCACTCCAGCCCCTGGAACATCCTTGCCTCCAAAGGCACCAGCACTCATTTGCTCTAGAGCACACACACACACACACACACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CCA 90 bp | GGTGGTCTTAAGCTGCCAGATCTGAGTTCCGGGAAGCTGAACAACTaGAGTCCTCGGCTAGAACAGCACACAAACCGAACTGCTGAGCCA | + |
Preference number: 1 (lower is better) Translates to: GGLKLPDLSSGKLNN*SPRLEQHTNRTAEP Trigger: TGGCTCAGCAGTTCGGTTTGTGTGCTGTTCTAGCCGAGGACTCCAGTTGTTCAGCTTCCCGGAACTCAGATCTGGCAGCTTAAGACCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR TCA 90 bp | TGTGTGTGTGTGTGTGTAGGATGTGCACGTGAATACAGATGCCCATaGAGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAGTTATGCTCA | + |
Preference number: 1 (lower is better) Translates to: CVCVCVGCAREYRCP*SPEASGPLKQKLCS Trigger: TGAGCATAACTTTTGCTTCAGGGGACCTGATGCCTCTGGACTTCATGGGCATCTGTATTCACGTGCACATCCTACACACACACACACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CAA 90 bp | CTGGGTTCCAGCCTCCACTGCTGCTATTGCTCTGGGCCAGCTGTCTaGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGGCGGGCACC | + |
Preference number: 2 (lower is better) Translates to: LGSSLHCCYCSGPAV*VVTSSVEPSSVAGT Trigger: GGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGGAGGCTGGAACCCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR-3UTR TCA 90 bp | CCACTGCTGCTATTGCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACC | + |
Preference number: 2 (lower is better) Translates to: PLLLLLWASCLGGHQLGGAVLSC*RHLQLT Trigger: GGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGC...TCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR-3UTR TCA 90 bp | CCACTGCTGCTATTGCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGATTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGT | + |
Preference number: 2 (lower is better) Translates to: PLLLLLWASCLGGHQLGGLLDSF*SVWGGR Trigger: ACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAA...TCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR-3UTR TCA 90 bp | TATTGCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTAGGCCAGGTAGGAGCTaGGGCATGAGGGGTTTCTTG | + |
Preference number: 2 (lower is better) Translates to: YCSGPAVLVVTSSVEPSSRPGRS*GMRGFL Trigger: CAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCT...AGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR-3UTR TCA 90 bp | CCTGGAACTTGCTATGTAGACCAGGATGGCCTCCAACTCAGTTACCTGCCTGCCTTCCAGGGGCTGGAGTaGCAGGTGGTCTTAAGCTGC | + |
Preference number: 2 (lower is better) Translates to: PGTCYVDQDGLQLSYLPAFQGLE*QVVLSC Trigger: GCAGCTTAAGACCACCTGTCACTCCAGCCCCTGGAA...GGCAGGCAGGTAACTGAGTTGGAGGCCATCCTGGTCTACATAGCAAGTTCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR-3UTR GCA 90 bp | TCTGGCTGGTGGTCCAGAGCTGGCACACAGCAGGAGAGGGGCGTGTTCATTGTCATGAGCCACCCGCAGTaGATTCTGGGAATCAAACTC | + |
Preference number: 2 (lower is better) Translates to: SGWWSRAGTQQERGVFIVMSHPQ*ILGIKL Trigger: GAGTTTGATTCCCAGAATGCACTGCGGGTGGCTCAT...GACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR-3UTR CCA 90 bp | GCTGGTGGTCCAGAGCTGGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTCTGACCCGCAGTGCATTCTaGGAATCAAACTCTCATCCT | + |
Preference number: 2 (lower is better) Translates to: AGGPELAHSRRGACSLSLTRSAF*ESNSHP Trigger: AGGATGAGAGTTTGATTCCCAGAATGCACTGCGGGT...CAGAGACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CAA 90 bp | GGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTCTGCTTTCTCCTaGTATGTTAGGGGCTCAGTCCTGATGGCTTTACCTCCTCTTAGT | + |
Preference number: 2 (lower is better) Translates to: GTQQERGVFIVSAFS*YVRGSVLMALPPLS Trigger: ACTAAGAGGAGGTAAAGCCATCAGGACTGAGCCCCTAACATACAAGGAGAAAGCAGAGACAATGAACACGCCCCTCTCCTGCTGTGTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR-3UTR TCA 90 bp | GGGGAGTATTATTTTGAGACTTGGTCTCACCATTTAGCTCTGGTTAGCCTGGAAGAATACAGATGCCCATaGAGTCCAGAGGCATCAGGT | + |
Preference number: 2 (lower is better) Translates to: GEYYFETWSHHLALVSLEEYRCP*SPEASG Trigger: ACCTGATGCCTCTGGACTTCATGGGCATCTGTATTC...TTCCAGGCTAACCAGAGCTAAATGGTGAGACCAAGTCTCAAAATAATACTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CCA 72 bp | TCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTaGCGGGCACCGGGACGCTGTGGCGTGGCAGGGCGC | + |
Preference number: 3 (lower is better) Translates to: SWWSPARWSPVL*RAPGRCGVAGR Trigger: GCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR CCA 72 bp | GCCCAGTTCTGTGGCGGGCACCGGGACGCTGTGGCGTaGCAGGGCGCTGTCTGCATCTTCTTTGAGCGGAGG | + |
Preference number: 3 (lower is better) Translates to: AQFCGGHRDAVA*QGAVCIFFERR Trigger: CCTCCGCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR CCA 72 bp | GCTCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTaGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGT | + |
Preference number: 3 (lower is better) Translates to: ALGQLSWWSPAR*SPVLWRAPGRC Trigger: ACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR CCA 72 bp | GTGGAGCCCAGTTCTGTGGCGGGCACCGGGACGCTGTaGCGTGGCAGGGCGCTGTCTGCATCTTCTTTGAGC | + |
Preference number: 3 (lower is better) Translates to: VEPSSVAGTGTL*RGRALSASSLS Trigger: GCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR-3UTR CAA 90 bp | TCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGGCGGGCCGTCCTGAGCTGTaGACGCCACCTCCAGCTCAC | + |
Preference number: 3 (lower is better) Translates to: SGPAVLVVTSSVEPSSVAGRPEL*TPPPAH Trigger: GTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCC...CGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR CCA 72 bp | GCCTCCACTGCTGCTATTGCTCTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGG | + |
Preference number: 3 (lower is better) Translates to: ASTAAIALGQLS*WSPARWSPVLW Trigger: CCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGGAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR TCA 72 bp | CCTTCTGAAGTGTCTGGGGAGGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACCAGACTCACTAGACCC | + |
Preference number: 3 (lower is better) Translates to: PSEVSGEAVLSC*RHLQLTRLTRP Trigger: GGGTCTAGTGAGTCTGGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCCTCCCCAGACACTTCAGAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR GCA 72 bp | TCGGCTCTGAAGGTTCTAGGGCCCACATCTGATGATTaGCCTCTGGCTGGTGGTCCAGAGCTGGCACACAGC | + |
Preference number: 3 (lower is better) Translates to: SALKVLGPTSDD*PLAGGPELAHS Trigger: GCTGTGTGCCAGCTCTGGACCACCAGCCAGAGGGCAATCATCAGATGTGGGCCCTAGAACCTTCAGAGCCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CCA 72 bp | CATCTGATGATTGCCCTCTGGCTGGTGGTCCAGAGCTaGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTC | + |
Preference number: 3 (lower is better) Translates to: HLMIALWLVVQS*HTAGEGRVHCL Trigger: GAGACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGCCAGAGGGCAATCATCAGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CCA 72 bp | TCCGTCACTGAAGGGCCAAGTTCTTTCCCAAGCTGTTaGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGG | + |
Preference number: 3 (lower is better) Translates to: SVTEGPSSFPSC*VKSTSPVEIPG Trigger: CCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGGAAAGAACTTGGCCCTTCAGTGACGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CCA 72 bp | TGTGTGTGCTCTAGAGCAAATGAGTGCTGGTGCCTTTaGAGGCAAGGATGTTCCAGGGGCTGGAGTGACAGG | + |
Preference number: 3 (lower is better) Translates to: CVCSRANECWCL*RQGCSRGWSDR Trigger: CCTGTCACTCCAGCCCCTGGAACATCCTTGCCTCCAAAGGCACCAGCACTCATTTGCTCTAGAGCACACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CCA 72 bp | GTGTGTGTGTGTGTGTGCTCTAGAGCAAATGAGTGCTaGTGCCTTTGGAGGCAAGGATGTTCCAGGGGCTGG | + |
Preference number: 3 (lower is better) Translates to: VCVCVCSRANEC*CLWRQGCSRGW Trigger: CCAGCCCCTGGAACATCCTTGCCTCCAAAGGCACCAGCACTCATTTGCTCTAGAGCACACACACACACACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR TCA 72 bp | TCTTCTTTGAGCGGAGGCCAGGTAGGAGCTGAGGCATaGGGGGTTTCTTGCTGGACTCCTTCTGAAGTGTCT | + |
Preference number: 3 (lower is better) Translates to: SSLSGGQVGAEA*GVSCWTPSEVS Trigger: AGACACTTCAGAAGGAGTCCAGCAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCTCCGCTCAAAGAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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3UTR GCA 72 bp | TGTGTGTGTGTGTGTGTGTGCTCTAGAGCAAATGAGTaGTGGTGCCTTTGGAGGCAAGGATGTTCCAGGGGC | + |
Preference number: 3 (lower is better) Translates to: CVCVCVCSRANE*WCLWRQGCSRG Trigger: GCCCCTGGAACATCCTTGCCTCCAAAGGCACCAGCACTCATTTGCTCTAGAGCACACACACACACACACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR GCA 72 bp | AGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAGTTATaGTCAGTAATGAGCCACCCGCAGTGCATTCTGGGA | + |
Preference number: 3 (lower is better) Translates to: SPEASGPLKQKL*SVMSHPQCILG Trigger: TCCCAGAATGCACTGCGGGTGGCTCATTACTGAGCATAACTTTTGCTTCAGGGGACCTGATGCCTCTGGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CCA 72 bp | AAGCTGCCAGATCTGAGTTCCGGGAAGCTGAACAACTaGAGTCCTCGGCTAGAACAGCACACAAACCGAACT | + |
Preference number: 3 (lower is better) Translates to: KLPDLSSGKLNN*SPRLEQHTNRT Trigger: AGTTCGGTTTGTGTGCTGTTCTAGCCGAGGACTCCAGTTGTTCAGCTTCCCGGAACTCAGATCTGGCAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CCA 72 bp | CTCTGGTTAGCCTGGAACTTGCTATGTAGACCAGGATaGCCTCCAACTCAGTTACCTGCCTGCCTTTGCTTC | + |
Preference number: 3 (lower is better) Translates to: LWLAWNLLCRPG*PPTQLPACLCF Trigger: GAAGCAAAGGCAGGCAGGTAACTGAGTTGGAGGCCATCCTGGTCTACATAGCAAGTTCCAGGCTAACCAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR TCA 72 bp | GTGTGTGTAGGATGTGCACGTGAATACAGATGCCCATaGAGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAG | + |
Preference number: 3 (lower is better) Translates to: VCVGCAREYRCP*SPEASGPLKQK Trigger: CTTTTGCTTCAGGGGACCTGATGCCTCTGGACTTCATGGGCATCTGTATTCACGTGCACATCCTACACACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR TCA 72 bp | GTGTGTGTGTGTGTGTGTGTGTGTAGGATGTGCACGTaGATACAGATGCCCATGAAGTCCAGAGGCATCAGG | + |
Preference number: 3 (lower is better) Translates to: VCVCVCVCRMCT*IQMPMKSRGIR Trigger: CCTGATGCCTCTGGACTTCATGGGCATCTGTATTCACGTGCACATCCTACACACACACACACACACACACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR-3UTR CAA 90 bp | AATGGAACGTTCTCAAGTCAAGAGCTAACACAAAAGCAATCTCATGTGGCCTGTTTCTTTCCCAAGCTGTaGGGTGAAGTCCACAAGCCC | + |
Preference number: 3 (lower is better) Translates to: NGTFSSQELTQKQSHVACFFPKL*GEVHKP Trigger: GGGCTTGTGGACTTCACCCAACAGCTTGGGAAAGAA...ACAGGCCACATGAGATTGCTTTTGTGTTAGCTCTTGACTTGAGAACGTTCCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR GCA 72 bp | AAGCAAAAGTTATGCTCAGTAATGAGCCACCCGCAGTaGATTCTGGGAATCAAACTCTCATCCTCTGGAATC | + |
Preference number: 3 (lower is better) Translates to: KQKLCSVMSHPQ*ILGIKLSSSGI Trigger: GATTCCAGAGGATGAGAGTTTGATTCCCAGAATGCACTGCGGGTGGCTCATTACTGAGCATAACTTTTGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR-3UTR CAA 90 bp | GGGGAGTATTATTTTGAGACTTGGTCTCACCATTTAGCTCTGGTTAGCCTGGAACTCCAGCCGCTAATTTaGACATTTTTAAGTGTGCAT | + |
Preference number: 3 (lower is better) Translates to: GEYYFETWSHHLALVSLELQPLI*TFLSVH Trigger: ATGCACACTTAAAAATGTCAAAATTAGCGGCTGGAG...TTCCAGGCTAACCAGAGCTAAATGGTGAGACCAAGTCTCAAAATAATACTCCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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CDS-3UTR TCA 90 bp | TCTGTGGCGGGCACCGGGACGCTGTGGCGTGGCAGGGCGCTGTCTGCATCTTCTTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACC | + |
Preference number: 4 (lower is better) Translates to: SVAGTGTLWRGRALSASSSKHSV*LHWVGT Trigger: GGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGA...AGAAGATGCAGACAGCGCCCTGCCACGCCACAGCGTCCCGGTGCCCGCCACAGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS-3UTR CCA 90 bp | TCTGGGCCAGCTGTCTTGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTGGCGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGC | + |
Preference number: 4 (lower is better) Translates to: SGPAVLVVTSSVEPSSVASDCTG*APSCPG Trigger: GCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGA...CGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS-3UTR TCA 90 bp | TGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTGAGCGCGGAGCCCTCCTaGGGCTGCAGAGCTGTCCCA | + |
Preference number: 4 (lower is better) Translates to: WVKSTSPVEIPGFQPPLLSAEPS*GCRAVP Trigger: TGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGCT...CAGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR TCA 90 bp | AGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCAGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACC | + |
Preference number: 4 (lower is better) Translates to: SCWVKSTSPVEIPGFQPPAVLSC*RHLQLT Trigger: GGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGC...TGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR CCA 90 bp | TGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGC | + |
Preference number: 4 (lower is better) Translates to: WVKSTSPVEIPGFQPPLLSDCTG*APSCPG Trigger: GCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGA...CAGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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3UTR CAA 72 bp | AGCCTCCACTGCTGCTATTGCTCTGGGCCAGCTGTCTaGGTGGTCACCAGCTCGGTGGAGCCCAGTTCTGTG | + |
Preference number: 4 (lower is better) Translates to: SLHCCYCSGPAV*VVTSSVEPSSV Trigger: CACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGCAATAGCAGCAGTGGAGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS-3UTR CCA 90 bp | AAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGC | + |
Preference number: 4 (lower is better) Translates to: KLLGEVHKPSRDPWVPASSDCTG*APSCPG Trigger: GCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGA...GGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR CCA 90 bp | CCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGG | + |
Preference number: 4 (lower is better) Translates to: PSCWVKSTSPVEIPGFQPLGQLS*WSPARW Trigger: CCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAG...AGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR CCA 90 bp | TTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTCTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGG | + |
Preference number: 4 (lower is better) Translates to: LGEVHKPSRDPWVPASTALGQLS*WSPARW Trigger: CCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAG...AGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR CCA 90 bp | GCTGGTGGTCCAGAGCTGGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTCTGGATGTGGGAGACCATTaGCTCCAGGGTCAGCAGAGG | + |
Preference number: 4 (lower is better) Translates to: AGGPELAHSRRGACSLSLDVGDH*LQGQQR Trigger: CCTCTGCTGACCCTGGAGCCAATGGTCTCCCACATC...CAGAGACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR TCA 90 bp | TGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACC | + |
Preference number: 4 (lower is better) Translates to: CWVKSTSPVEIPGFQPPLSKHSV*LHWVGT Trigger: GGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGA...CAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR TCA 90 bp | CCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACC | + |
Preference number: 4 (lower is better) Translates to: PSCWVKSTSPVEIPGFQPSKHSV*LHWVGT Trigger: GGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGA...AGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR TCA 90 bp | CTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACC | + |
Preference number: 4 (lower is better) Translates to: LLGEVHKPSRDPWVPASTSKHSV*LHWVGT Trigger: GGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGA...AGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR TCA 90 bp | TTTCCCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACC | + |
Preference number: 4 (lower is better) Translates to: FPKLLGEVHKPSRDPWVPAVLSC*RHLQLT Trigger: GGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGC...TGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGGAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR TCA 90 bp | TGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGAGGCTCCAGGCTGCTTaGGTGAGGGATGTGGGAGAC | + |
Preference number: 4 (lower is better) Translates to: CWVKSTSPVEIPGFQPPLRLQAA*VRDVGD Trigger: GTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCT...CAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR TCA 90 bp | CCCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCAGGCCAGGTAGGAGCTaGGGCATGAGGGGTTTCTTG | + |
Preference number: 4 (lower is better) Translates to: PKLLGEVHKPSRDPWVPARPGRS*GMRGFL Trigger: CAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCT...GGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR CCA 90 bp | CCTGGAACTTGCTATGTAGACCAGGATGGCCTCCAACTCAGTTACCTGCCTGCCTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGC | + |
Preference number: 4 (lower is better) Translates to: PGTCYVDQDGLQLSYLPASDCTG*APSCPG Trigger: GCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGA...GGCAGGCAGGTAACTGAGTTGGAGGCCATCCTGGTCTACATAGCAAGTTCCAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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CDS-3UTR TCA 90 bp | TTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTAGGCCAGGTAGGAGCTaGGGCATGAGGGGTTTCTTG | + |
Preference number: 4 (lower is better) Translates to: LGEVHKPSRDPWVPASTARPGRS*GMRGFL Trigger: CAAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCT...AGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR TCA 90 bp | AAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCTCCAGGCTGCTTGAGTaGGGGATGTGGGAGACCATT | + |
Preference number: 4 (lower is better) Translates to: KLLGEVHKPSRDPWVPASSRLLE*GMWETI Trigger: AATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGA...GGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR TCA 90 bp | TTCCGGGAAGCTGAACAACTGGAGTCCTCGGCTAGAACAGCACACAAACCGAACTTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGT | + |
Preference number: 4 (lower is better) Translates to: FREAEQLESSARTAHKPNLLDSF*SVWGGR Trigger: ACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAA...GTTCGGTTTGTGTGCTGTTCTAGCCGAGGACTCCAGTTGTTCAGCTTCCCGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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CDS-3UTR TCA 90 bp | TCTTTCCCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCTTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGT | + |
Preference number: 4 (lower is better) Translates to: SFPSCWVKSTSPVEIPGFLLDSF*SVWGGR Trigger: ACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAA...GAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGGAAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR GCA 90 bp | GCTGGTGGTCCAGAGCTGGCACACAGCAGGAGAGGGGCGTGTTCATTGTCTCTGCTATCCCCATGCCTTTaGTTACTATGTCCAGTGTCC | + |
Preference number: 4 (lower is better) Translates to: AGGPELAHSRRGACSLSLLSPCL*LLCPVS Trigger: GGACACTGGACATAGTAAGCAAAGGCATGGGGATAG...CAGAGACAATGAACACGCCCCTCTCCTGCTGTGTGCCAGCTCTGGACCACCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR GCA 90 bp | TGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTGTCGCGCCTATCCCCATaGCTTTGCTTACTATGTCCA | + |
Preference number: 4 (lower is better) Translates to: WVKSTSPVEIPGFQPPLLSRLSP*LCLLCP Trigger: TGGACATAGTAAGCAAAGGCATGGGGATAGGCGCGA...CAGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR CCA 90 bp | ATACAGATGCCCATGAAGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAGTTATGGGCCAGCTGTCTTGGTaGTCACCAGCTCGGTGGAGC | + |
Preference number: 4 (lower is better) Translates to: IQMPMKSRGIRSPEAKVMGQLSW*SPARWS Trigger: GCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCC...CATAACTTTTGCTTCAGGGGACCTGATGCCTCTGGACTTCATGGGCATCTGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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CDS-3UTR CCA 90 bp | AAGTTATGCTCAGTAATGAGCCACCCGCAGTGCATTCTGGGAATCAAACTCTCACTGGGCCAGCTGTCTTaGTGGTCACCAGCTCGGTGG | + |
Preference number: 4 (lower is better) Translates to: KLCSVMSHPQCILGIKLSLGQLS*WSPARW Trigger: CCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAG...TGAGAGTTTGATTCCCAGAATGCACTGCGGGTGGCTCATTACTGAGCATAACTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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CDS-3UTR TCA 90 bp | AATGGAACGTTCTCAAGTCAAGAGCTAACACAAAAGCAATCTCATGTGGCCTGTGCCGTCCTGAGCTGTTaGCGCCACCTCCAGCTCACC | + |
Preference number: 4 (lower is better) Translates to: NGTFSSQELTQKQSHVACAVLSC*RHLQLT Trigger: GGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGC...ACAGGCCACATGAGATTGCTTTTGTGTTAGCTCTTGACTTGAGAACGTTCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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3UTR CAA 72 bp | CAGGAGAGGGGCGTGTTCATTGTCTCTGCTTTCTCCTaGTATGTTAGGGGCTCAGTCCTGATGGCTTTACCT | + |
Preference number: 4 (lower is better) Translates to: QERGVFIVSAFS*YVRGSVLMALP Trigger: AGGTAAAGCCATCAGGACTGAGCCCCTAACATACAAGGAGAAAGCAGAGACAATGAACACGCCCCTCTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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CDS-3UTR TCA 90 bp | GGGGAGTATTATTTTGAGACTTGGTCTCACCATTTAGCTCTGGTTAGCCTGGAATTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGT | + |
Preference number: 4 (lower is better) Translates to: GEYYFETWSHHLALVSLELLDSF*SVWGGR Trigger: ACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAA...TTCCAGGCTAACCAGAGCTAAATGGTGAGACCAAGTCTCAAAATAATACTCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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CDS-3UTR GCA 90 bp | ATACAGATGCCCATGAAGTCCAGAGGCATCAGGTCCCCTGAAGCAAAAGTTATGTTTTCCAGGGACTCTTaGTGGACTCCTTCTGAAGTG | + |
Preference number: 4 (lower is better) Translates to: IQMPMKSRGIRSPEAKVMFSRDS*WTPSEV Trigger: CACTTCAGAAGGAGTCCAGCAAGAGTCCCTGGAAAA...CATAACTTTTGCTTCAGGGGACCTGATGCCTCTGGACTTCATGGGCATCTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089161.10 |
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CDS GCA 90 bp | GCGCGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTGGG | + |
Preference number: 5 (lower is better) Translates to: ARSPPEAAELSQAPG*LQRVEALGLIALGG Trigger: CCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS GCA 90 bp | GCGCGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGAGTGAGGGATGTGGGAGACCATTGGCTCCAGGGTCAGCA | + |
Preference number: 5 (lower is better) Translates to: ARSPPEAAELSQAPG*LSEGCGRPLAPGSA Trigger: TGCTGACCCTGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS CCA 90 bp | AGGCTGCTTGCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGACCCGGAGTC | + |
Preference number: 5 (lower is better) Translates to: RLLAEGRSTRSDCTG*APSCPGSSGFGPGV Trigger: GACTCCGGGTCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS TCA 90 bp | GGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTTaGGTGAGGGATGTGGGAGACCATTGGCTCCAGGGTCAGCAGAGG | + |
Preference number: 5 (lower is better) Translates to: GALLRLQSCPRLQAA*VRDVGDHWLQGQQR Trigger: CCTCTGCTGACCCTGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS GCA 90 bp | GCGCGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGTATGTCCAGTGTCCGGCGTGTGGAAGAGCTCACAGGACA | + |
Preference number: 5 (lower is better) Translates to: ARSPPEAAELSQAPG*LYVQCPACGRAHRT Trigger: TGTCCTGTGAGCTCTTCCACACGCCGGACACTGGACATACAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000231049.2 |
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CDS CCA 90 bp | AGTTTCTCACCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGACCCGGAGTC | + |
Preference number: 5 (lower is better) Translates to: SFSPEGRSTRSDCTG*APSCPGSSGFGPGV Trigger: GACTCCGGGTCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGGTGAGAAACT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS GCA 90 bp | AGGACACGCAGTTTCTCACCAGAGGGTCGAAGCACTCGGTCTGATTaGACTGGGTGGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGA | + |
Preference number: 5 (lower is better) Translates to: RTRSFSPEGRSTRSD*TGWAPSCPGSSGFG Trigger: TCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGGTGAGAAACTGCGTGTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS CCA 90 bp | CCATTGGCTCCAGGGTCAGCAGAGGAGCATGCGGCGCTGGTAGGCTaGATACCTCAGGCAGGTCGCGCCTATCCCCATGCCTTTGCTTAC | + |
Preference number: 5 (lower is better) Translates to: PLAPGSAEEHAALVG*IPQAGRAYPHAFAY Trigger: GTAAGCAAAGGCATGGGGATAGGCGCGACCTGCCTGAGGTATCCAGCCTACCAGCGCCGCATGCTCCTCTGCTGACCCTGGAGCCAATGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR CAA 90 bp | TGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTGCTGGGCCGTCCTGAGCTGTaGACGCCACCTCCAGCTCAC | + |
Preference number: 5 (lower is better) Translates to: WVKSTSPVEIPGFQPPLLGRPEL*TPPPAH Trigger: GTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCC...CAGCAGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS TCA 90 bp | TCACAGGACACGCAGTTTCTCACCAGAGGGTCGAAGCACTCGGTCTaGTTGCACTGGGTGGGCACCGAGCTGTCCCGGCTCCTCTGGCTT | + |
Preference number: 5 (lower is better) Translates to: SQDTQFLTRGSKHSV*LHWVGTELSRLLWL Trigger: AAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGGTGAGAAACTGCGTGTCCTGTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR CAA 90 bp | AGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCAGGCCGTCCTGAGCTGTaGACGCCACCTCCAGCTCAC | + |
Preference number: 5 (lower is better) Translates to: SCWVKSTSPVEIPGFQPPGRPEL*TPPPAH Trigger: GTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCC...TGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR CAA 90 bp | AGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCATCTGGGCCAGCTGTCTaGGTGGTCACCAGCTCGGTG | + |
Preference number: 5 (lower is better) Translates to: SCWVKSTSPVEIPGFQPPSGPAV*VVTSSV Trigger: CACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGA...TGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS-3UTR CAA 90 bp | CTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCCAGCCTCCACTTCTGGGCCAGCTGTCTaGGTGGTCACCAGCTCGGTG | + |
Preference number: 5 (lower is better) Translates to: LLGEVHKPSRDPWVPASTSGPAV*VVTSSV Trigger: CACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGA...AGTGGAGGCTGGAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS GCA 90 bp | GGTAGGCTGGATACCTCAGGCAGGTCGCGCCTATCCCCATGCCTTTaGTTACTATGTCCAGTGTCCGGCGTGTGGAAGAGCTCACAGGAC | + |
Preference number: 5 (lower is better) Translates to: GRLDTSGRSRLSPCL*LLCPVSGVWKSSQD Trigger: GTCCTGTGAGCTCTTCCACACGCCGGACACTGGACATAGTAAGCAAAGGCATGGGGATAGGCGCGACCTGCCTGAGGTATCCAGCCTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR CAA 90 bp | TCTTTCCCAAGCTGTTGGGTGAAGTCCACAAGCCCAGTAGAGATCCCTGGGTTCGGATGTGGGAGACCATaGGCTCCAGGGTCAGCAGAG | + |
Preference number: 5 (lower is better) Translates to: SFPSCWVKSTSPVEIPGFGCGRP*APGSAE Trigger: CTCTGCTGACCCTGGAGCCAATGGTCTCCCACATCC...GAACCCAGGGATCTCTACTGGGCTTGTGGACTTCACCCAACAGCTTGGGAAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR CAA 90 bp | TTCCGGGAAGCTGAACAACTGGAGTCCTCGGCTAGAACAGCACACAAACCGAACCAGGCTCCAGGCTGCTaGAGTGAGGGATGTGGGAGA | + |
Preference number: 5 (lower is better) Translates to: FREAEQLESSARTAHKPNQAPGC*SEGCGR Trigger: TCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTG...GTTCGGTTTGTGTGCTGTTCTAGCCGAGGACTCCAGTTGTTCAGCTTCCCGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS-3UTR CAA 90 bp | AAGTTATGCTCAGTAATGAGCCACCCGCAGTGCATTCTGGGAATCAAACTCTCAGGCCGTCCTGAGCTGTaGACGCCACCTCCAGCTCAC | + |
Preference number: 5 (lower is better) Translates to: KLCSVMSHPQCILGIKLSGRPEL*TPPPAH Trigger: GTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCC...TGAGAGTTTGATTCCCAGAATGCACTGCGGGTGGCTCATTACTGAGCATAACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 |
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CDS TCA 90 bp | CTGTCTGCATCTTCTTTGAGCGGAGGCCAGGTAGGAGCTGAGGCATaGGGGGTTTCTGAGGAGGGTACAAAGACATTTTCCAGGGACTCT | + |
Preference number: 5 (lower is better) Translates to: LSASSLSGGQVGAEA*GVSEEGTKTFSRDS Trigger: AGAGTCCCTGGAAAATGTCTTTGTACCCTCCTCAGAAACCCCTCATGCCTCAGCTCCTACCTGGCCTCCGCTCAAAGAAGATGCAGACAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089161.10 |
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CDS TCA 72 bp | AGCAGCGCCACGTCGGGTCTCAGCGCGGAGCCCTCCTaGGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTT | + |
Preference number: 6 (lower is better) Translates to: SSATSGLSAEPS*GCRAVPGSRLL Trigger: AAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGCTGAGACCCGACGTGGCGCTGCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS CCA 72 bp | CCAGGGTCAGCAGAGGAGCATGCGGCGCTGGTAGGCTaGATACCTCAGGCAGGTCGCGCCTATCCCCATGCC | + |
Preference number: 6 (lower is better) Translates to: PGSAEEHAALVG*IPQAGRAYPHA Trigger: GGCATGGGGATAGGCGCGACCTGCCTGAGGTATCCAGCCTACCAGCGCCGCATGCTCCTCTGCTGACCCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS CAA 90 bp | CGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTaGCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTGGGCAC | + |
Preference number: 6 (lower is better) Translates to: RSPPEAAELSQAPGC*QRVEALGLIALGGH Trigger: GTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS CCA 72 bp | CCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGA | + |
Preference number: 6 (lower is better) Translates to: PEGRSTRSDCTG*APSCPGSSGFG Trigger: TCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089161.10 ENSMUST00000109535.3 ENSMUST00000231049.2 |
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CDS CCA 72 bp | GCAGAGGGTCGAAGCACTCGGTCTGATTGCACTGGGTaGGCACCGAGCTGTCCCGGCTCCTCTGGCTTCGGA | + |
Preference number: 6 (lower is better) Translates to: AEGRSTRSDCTG*APSCPGSSGFG Trigger: TCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATCAGACCGAGTGCTTCGACCCTCTGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS CAA 90 bp | CGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTaGTATGTCCAGTGTCCGGCGTGTGGAAGAGCTCACAGGACACGC | + |
Preference number: 6 (lower is better) Translates to: RSPPEAAELSQAPGC*YVQCPACGRAHRTR Trigger: GCGTGTCCTGTGAGCTCTTCCACACGCCGGACACTGGACATACAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000231049.2 |
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CDS CAA 90 bp | CTGTCCCAGGCTCCAGGCTGCTTGAGTGAGGGATGTGGGAGACCATaGGCTCCAGGGTCAGCAGAGGAGCATGCGGCGCTGGTAGGCTGG | + |
Preference number: 6 (lower is better) Translates to: LSQAPGCLSEGCGRP*APGSAEEHAALVGW Trigger: CCAGCCTACCAGCGCCGCATGCTCCTCTGCTGACCCTGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS CAA 90 bp | CGGAGCCCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTaGAGTGAGGGATGTGGGAGACCATTGGCTCCAGGGTCAGCAGAG | + |
Preference number: 6 (lower is better) Translates to: RSPPEAAELSQAPGC*SEGCGRPLAPGSAE Trigger: CTCTGCTGACCCTGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS GCA 72 bp | CCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGTATGTCCAGTGTCCGGCGTGTGGAAGAGCT | + |
Preference number: 6 (lower is better) Translates to: PPEAAELSQAPG*LYVQCPACGRA Trigger: AGCTCTTCCACACGCCGGACACTGGACATACAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000231049.2 |
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CDS GCA 72 bp | CCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGAGTGAGGGATGTGGGAGACCATTGGCTCCA | + |
Preference number: 6 (lower is better) Translates to: PPEAAELSQAPG*LSEGCGRPLAP Trigger: TGGAGCCAATGGTCTCCCACATCCCTCACTCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS GCA 72 bp | CCTCCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTaGTTGCAGAGGGTCGAAGCACTCGGTCTGATTGCA | + |
Preference number: 6 (lower is better) Translates to: PPEAAELSQAPG*LQRVEALGLIA Trigger: TGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS CAA 72 bp | CCTGAGGCTGCAGAGCTGTCCCAGGCTCCAGGCTGCTaGCAGAGGGTCGAAGCACTCGGTCTGATTGCACTG | + |
Preference number: 6 (lower is better) Translates to: PEAAELSQAPGC*QRVEALGLIAL Trigger: CAGTGCAATCAGACCGAGTGCTTCGACCCTCTGCAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229984.2 |
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CDS GCA 72 bp | GATACCTCAGGCAGGTCGCGCCTATCCCCATGCCTTTaGTTACTATGTCCAGTGTCCGGCGTGTGGAAGAGC | + |
Preference number: 6 (lower is better) Translates to: DTSGRSRLSPCL*LLCPVSGVWKS Trigger: GCTCTTCCACACGCCGGACACTGGACATAGTAAGCAAAGGCATGGGGATAGGCGCGACCTGCCTGAGGTATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109535.3 |
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CDS CCA 72 bp | GGCTCCAGGCTGCTTGTATGTCCAGTGTCCGGCGTGTaGAAGAGCTCACAGGACACGCAGTTTCTCACCAGA | + |
Preference number: 6 (lower is better) Translates to: GSRLLVCPVSGV*KSSQDTQFLTR Trigger: TCTGGTGAGAAACTGCGTGTCCTGTGAGCTCTTCCACACGCCGGACACTGGACATACAAGCAGCCTGGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089161.10 ENSMUST00000231049.2 |
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CDS TCA 72 bp | AAAGACATTTTCCAGGGACTCTTGCTGGACTCCTTCTaGAGTGTCTGGGGAGGCCGTCCTGAGCTGTTGACG | + |
Preference number: 6 (lower is better) Translates to: KDIFQGLLLDSF*SVWGGRPELLT Trigger: CGTCAACAGCTCAGGACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAAGAGTCCCTGGAAAATGTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089161.10 |