Pregenerated sensors for TNFRSF13B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000010142Ensembl transcript IDs: ENSMUST00000010286.8, ENSMUST00000101103.4, ENSMUST00000139422.8, ENSMUST00000146033.8
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACAGGCGGTGCTGGGAACGTGGGCGCTGCAGGTGGTTGCTTTGTTaGTCTGCGTGGGTGCAGCCGGGCTTCCTTTATCGTGTCTTCATC | + |
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Preference number: 1 (lower is better) Translates to: HRRCWERGRCRWLLC*SAWVQPGFLYRVFI Trigger: GATGAAGACACGATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCCCACGTTCCCAGCACCGCCTGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 90 bp | GCGGTGCTGGGAACGTGGGCGCTGCAGGTGGTTGCTTTGTTGCTCTaGGTGGGTGCAGCCGGGCTTCCTTTATCGTGTCTTCATCTGTCT | + |
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Preference number: 1 (lower is better) Translates to: AVLGTWALQVVALLL*VGAAGLPLSCLHLS Trigger: AGACAGATGAAGACACGATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCCCACGTTCCCAGCACCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 90 bp | GGGAACGTGGGCGCTGCAGGTGGTTGCTTTGTTGCTCTGCGTGGGTaGAGCCGGGCTTCCTTTATCGTGTCTTCATCTGTCTCTTCTCCA | + |
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Preference number: 1 (lower is better) Translates to: GNVGAAGGCFVALRG*SRASFIVSSSVSSP Trigger: TGGAGAAGAGACAGATGAAGACACGATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCCCACGTTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CCA 90 bp | TGCTGGGAACGTGGGCGCTGCAGGTGGTTGCTTTGTTGCTCTGCGTaGGTGCAGCCGGGCTTCCTTTATCGTGTCTTCATCTGTCTCTTC | + |
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Preference number: 1 (lower is better) Translates to: CWERGRCRWLLCCSA*VQPGFLYRVFICLF Trigger: GAAGAGACAGATGAAGACACGATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCCCACGTTCCCAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CCA 90 bp | AACAGGGGCACCTGTTGTGTGGCCTTTGGGGTTCAGAAGCCTGCCTaGGTAACAAGGGTGAAGTGTACCGTCTCACCCTTCAGCTTGCTG | + |
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Preference number: 1 (lower is better) Translates to: NRGTCCVAFGVQKPA*VTRVKCTVSPFSLL Trigger: CAGCAAGCTGAAGGGTGAGACGGTACACTTCACCCTTGTTACCCAGGCAGGCTTCTGAACCCCAAAGGCCACACAACAGGTGCCCCTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR TCA 90 bp | TGTGCAGACAGTCTCCTCCCTATGCAGCCTGATAGCGATGAATGGTaGGAACAGGGGCACCTGTTGTGTGGCCTTTGGGGTTCAGAAGCC | + |
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Preference number: 1 (lower is better) Translates to: CADSLLPMQPDSDEW*EQGHLLCGLWGSEA Trigger: GGCTTCTGAACCCCAAAGGCCACACAACAGGTGCCCCTGTTCTCACCATTCATCGCTATCAGGCTGCATAGGGAGGAGACTGTCTGCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR TCA 90 bp | TCACGATTCTTTGAAGCCGAGGCTGGTCTCTGCACCCTATGTTCTTaGTGCCTCTGTTCTCTTCTACCCTGGTTCCAGAATCGTCTTGCA | + |
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Preference number: 1 (lower is better) Translates to: SRFFEAEAGLCTLCS*CLCSLLPWFQNRLA Trigger: TGCAAGACGATTCTGGAACCAGGGTAGAAGAGAACAGAGGCATCAAGAACATAGGGTGCAGAGACCAGCCTCGGCTTCAAAGAATCGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR TCA 90 bp | ATCTTGCATGTGTGGCCTCAGGAAGAGCCAATTCTGCAGACACCTTaGCTGCAGACTTCCAAACTCTGTGGACAGCCACTTTGTGTTATT | + |
|
Preference number: 1 (lower is better) Translates to: ILHVWPQEEPILQTP*LQTSKLCGQPLCVI Trigger: AATAACACAAAGTGGCTGTCCACAGAGTTTGGAAGTCTGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGCCACACATGCAAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CCA 90 bp | GCAGATCATAACATGAAATATAAGAATGATCCCGAGACAGAAAAATaGAGAGGGACTACCAGTGGGTTAAGGAGAAGCCAAGGACAGATC | + |
|
Preference number: 1 (lower is better) Translates to: ADHNMKYKNDPETEK*RGTTSGLRRSQGQI Trigger: GATCTGTCCTTGGCTTCTCCTTAACCCACTGGTAGTCCCTCTCCATTTTTCTGTCTCGGGATCATTCTTATATTTCATGTTATGATCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 90 bp | GCACATATACACACAACTCATACAGACACACAACTCACGTATACATaGACATATGACATAACCCCGAATCTGCACATACACATACAAGTT | + |
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Preference number: 1 (lower is better) Translates to: AHIHTTHTDTQLTYT*TYDITPNLHIHIQV Trigger: AACTTGTATGTGTATGTGCAGATTCGGGGTTATGTCATATGTGCATGTATACGTGAGTTGTGTGTCTGTATGAGTTGTGTGTATATGTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CAA 90 bp | CAGGCACAGGCGGTGCTGGGAACGTGGGCGCTGCAGGTGGTTGCTTaGTTGCTCTGCGTGGGTGCAGCCGGGCTTCCTTTATCGTGTCTT | + |
|
Preference number: 2 (lower is better) Translates to: QAQAVLGTWALQVVA*LLCVGAAGLPLSCL Trigger: AAGACACGATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCCCACGTTCCCAGCACCGCCTGTGCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CAA 90 bp | GCACAGGCGGTGCTGGGAACGTGGGCGCTGCAGGTGGTTGCTTTGTaGCTCTGCGTGGGTGCAGCCGGGCTTCCTTTATCGTGTCTTCAT | + |
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Preference number: 2 (lower is better) Translates to: AQAVLGTWALQVVAL*LCVGAAGLPLSCLH Trigger: ATGAAGACACGATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCCCACGTTCCCAGCACCGCCTGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | AGACAGGCTGAGCACAGGAGCCTGTCTGCGCATGCACTGGTGTTATTCCTCAGCGCCAAGGACAGATCTTaGATGTGTGGCCTCAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: RQAEHRSLSAHALVLFLSAKDRS*MCGLRK Trigger: CTTCCTGAGGCCACACATGCAAGATCTGTCCTTGGC...GCTGAGGAATAACACCAGTGCATGCGCAGACAGGCTCCTGTGCTCAGCCTGTCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGACCAAAAATTCTCACGATTCTTTGAAGCCGAGGCTGGTCTCTGCACCCTAGTTGCTCTGCGTGGGTaGAGCCGGGCTTCCTTTATC | + |
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Preference number: 2 (lower is better) Translates to: ADQKFSRFFEAEAGLCTLVALRG*SRASFI Trigger: GATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAAC...TAGGGTGCAGAGACCAGCCTCGGCTTCAAAGAATCGTGAGAATTTTTGGTCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGACCAAAAATTCTCACGATTCTTTGAAGCCGAGGCTGGTCTCTGCACCCTAGTTGCTTTGTTGCTCTaGGTGGGTGCAGCCGGGCTT | + |
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Preference number: 2 (lower is better) Translates to: ADQKFSRFFEAEAGLCTLVALLL*VGAAGL Trigger: AAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAAC...TAGGGTGCAGAGACCAGCCTCGGCTTCAAAGAATCGTGAGAATTTTTGGTCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGACCAAAAATTCTCACGATTCTTTGAAGCCGAGGCTGGTCTCTGCACCCTAGTTCCAGAATCGTCTTaGATTTTCAGCCCCTTGGGT | + |
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Preference number: 2 (lower is better) Translates to: ADQKFSRFFEAEAGLCTLVPESS*IFSPLG Trigger: ACCCAAGGGGCTGAAAATGCAAGACGATTCTGGAAC...TAGGGTGCAGAGACCAGCCTCGGCTTCAAAGAATCGTGAGAATTTTTGGTCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR CCA 90 bp | GATCTTGCATGTGTGGCCTCAGGAAGAGCCAATTCTGCAGACACCTTGACTGCACACCCATCACCTAGATaGTTTTTAGATGTTTGGCCT | + |
|
Preference number: 2 (lower is better) Translates to: DLACVASGRANSADTLTAHPSPR*FLDVWP Trigger: AGGCCAAACATCTAAAAACCATCTAGGTGATGGGTG...TGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGCCACACATGCAAGATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR CCA 90 bp | CAGAGTTATTCTGTGCAGACAGTCTCCTCCCTATGCAGCCTGATAGCGATGAATTGGTTTTTAGATGTTTaGCCTTCACCTAGAAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: QSYSVQTVSSLCSLIAMNWFLDV*PSPRRA Trigger: GGCCCTTCTAGGTGAAGGCCAAACATCTAAAAACCA...ATTCATCGCTATCAGGCTGCATAGGGAGGAGACTGTCTGCACAGAATAACTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CAA 90 bp | AGACTTCCAAACTCTGTGGACAGCCACTTTGTGTTATTAGATCTGTaGTCAGAGTTATTCTGTGCAGACAGTCTCCTCCCTATGCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: RLPNSVDSHFVLLDL*SELFCADSLLPMQP Trigger: AGGCTGCATAGGGAGGAGACTGTCTGCACAGAATAACTCTGACAACAGATCTAATAACACAAAGTGGCTGTCCACAGAGTTTGGAAGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | CTAGGTGGCAACTTTTCAACAAGGATAAAAACAGTGATGGTCTCACAAGGCCTCACAGTCTCCTCCCTATaGAGCCTGATAGCGATGAAT | + |
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Preference number: 2 (lower is better) Translates to: LGGNFSTRIKTVMVSQGLTVSSL*SLIAMN Trigger: ATTCATCGCTATCAGGCTGCATAGGGAGGAGACTGT...GAGGCCTTGTGAGACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACCTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR TCA 90 bp | GCTAGGTGGCAACTTTTCAACAAGGATAAAAACAGTGATGGTCTCACAAGGCCTGTATACATGCACATATaGCATAACCCCGAATCTGCA | + |
|
Preference number: 2 (lower is better) Translates to: ARWQLFNKDKNSDGLTRPVYMHI*HNPESA Trigger: TGCAGATTCGGGGTTATGTCATATGTGCATGTATAC...AGGCCTTGTGAGACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACCTAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | GGTGGCAACTTTTCAACAAGGATAAAAACAGTGATGGTCTCACAAGGCCTCCATCAACTCACGTATACATaGACATATGACATAACCCCG | + |
|
Preference number: 2 (lower is better) Translates to: GGNFSTRIKTVMVSQGLHQLTYT*TYDITP Trigger: CGGGGTTATGTCATATGTGCATGTATACGTGAGTTG...ATGGAGGCCTTGTGAGACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAAAATGGTTCAGAAGCCTGCCTaGGTAACAAGGGTGAAGTGT | + |
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Preference number: 2 (lower is better) Translates to: CFKCGLLWRWTLYRKIKMVQKPA*VTRVKC Trigger: ACACTTCACCCTTGTTACCCAGGCAGGCTTCTGAAC...CATTTTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAAAATGTCTCACCCTTCAGCTTaGTGGGAAATGCTTCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: CFKCGLLWRWTLYRKIKMSHPSA*WEMLLR Trigger: TCTCAGAAGCATTTCCCAGCAAGCTGAAGGGTGAGA...CATTTTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR TCA 90 bp | TTACTGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAAGCTGGGAAATGCTTCTaGGAGTATTTTCATGCACCT | + |
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Preference number: 2 (lower is better) Translates to: LLLQMWPSLEMDSLQENQAGKCF*EYFHAP Trigger: AGGTGCATGAAAATACTCTCAGAAGCATTTCCCAGC...TTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | TTACTGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAAGTCAGAGTTATTCTGTaGAGACAGTCTCCTCCCTAT | + |
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Preference number: 2 (lower is better) Translates to: LLLQMWPSLEMDSLQENQVRVIL*RQSPPY Trigger: ATAGGGAGGAGACTGTCTGCACAGAATAACTCTGAC...TTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGATCATAACATGAAATATAAGAATGATCCCGAGACAGAAAAATGGAGAGGGACACACACATCTGCATaGACAGAATTCACACACATA | + |
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Preference number: 2 (lower is better) Translates to: ADHNMKYKNDPETEKWRGTHTSA*TEFTHI Trigger: TATGTGTGTGAATTCTGTGCATGCAGATGTGTGTGT...CCCTCTCCATTTTTCTGTCTCGGGATCATTCTTATATTTCATGTTATGATCTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 72 bp | AGCGGCAGGCACAGGCGGTGCTGGGAACGTGGGCGCTaGAGGTGGTTGCTTTGTTGCTCTGCGTGGGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: SGRHRRCWERGR*RWLLCCSAWVQ Trigger: CTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCCCACGTTCCCAGCACCGCCTGTGCCTGCCGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 72 bp | GGAACGTGGGCGCTGCAGGTGGTTGCTTTGTTGCTCTaGGTGGGTGCAGCCGGGCTTCCTTTATCGTGTCTT | + |
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Preference number: 3 (lower is better) Translates to: GTWALQVVALLL*VGAAGLPLSCL Trigger: AAGACACGATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCCCACGTTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 72 bp | GGCGCTGCAGGTGGTTGCTTTGTTGCTCTGCGTGGGTaGAGCCGGGCTTCCTTTATCGTGTCTTCATCTGTC | + |
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Preference number: 3 (lower is better) Translates to: GAAGGCFVALRG*SRASFIVSSSV Trigger: GACAGATGAAGACACGATAAAGGAAGCCCGGCTGCACCCACGCAGAGCAACAAAGCAACCACCTGCAGCGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 72 bp | GGGCACCTGTTGTGTGGCCTTTGGGGTTCAGAAGCCTaGCTGGGTAACAAGGGTGAAGTGTACCGTCTCACC | + |
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Preference number: 3 (lower is better) Translates to: GHLLCGLWGSEA*LGNKGEVYRLT Trigger: GGTGAGACGGTACACTTCACCCTTGTTACCCAGGCAGGCTTCTGAACCCCAAAGGCCACACAACAGGTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR CAA 90 bp | CTGTTGTCAGAGTTATTCTGTGCAGACAGTCTCCTCCCTATGCAGCCTGATAGCCAGGTGGTTGCTTTGTaGCTCTGCGTGGGTGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: LLSELFCADSLLPMQPDSQVVAL*LCVGAA Trigger: GGCTGCACCCACGCAGAGCAACAAAGCAACCACCTG...GCTATCAGGCTGCATAGGGAGGAGACTGTCTGCACAGAATAACTCTGACAACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR CAA 90 bp | GATCTTGCATGTGTGGCCTCAGGAAGAGCCAATTCTGCAGACACCTTGACTGCAGAACAGGGGCACCTGTaGTGTGGCCTTTGGGGTTCA | + |
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Preference number: 3 (lower is better) Translates to: DLACVASGRANSADTLTAEQGHL*CGLWGS Trigger: TGAACCCCAAAGGCCACACAACAGGTGCCCCTGTTC...TGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGCCACACATGCAAGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR TCA 72 bp | GTGTGGCCTCAGGAAGAGCCAATTCTGCAGACACCTTaGCTGCAGACTTCCAAACTCTGTGGACAGCCACTT | + |
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Preference number: 3 (lower is better) Translates to: VWPQEEPILQTP*LQTSKLCGQPL Trigger: AAGTGGCTGTCCACAGAGTTTGGAAGTCTGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGCCACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 72 bp | GGCCTCAGGAAGAGCCAATTCTGCAGACACCTTGACTaGAGACTTCCAAACTCTGTGGACAGCCACTTTGTG | + |
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Preference number: 3 (lower is better) Translates to: GLRKSQFCRHLD*RLPNSVDSHFV Trigger: CACAAAGTGGCTGTCCACAGAGTTTGGAAGTCTGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR TCA 72 bp | TTAAAGACTAGAAATAGGTTCGTCTCCCAGACAGGCTaGGCACAGGAGCCTGTCTGCGCATGCACTGGTGTT | + |
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Preference number: 3 (lower is better) Translates to: LKTRNRFVSQTG*AQEPVCACTGV Trigger: AACACCAGTGCATGCGCAGACAGGCTCCTGTGCTCAGCCTGTCTGGGAGACGAACCTATTTCTAGTCTTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 72 bp | TGTCAGAGTTATTCTGTGCAGACAGTCTCCTCCCTATaGAGCCTGATAGCGATGAATGGTGAGAACAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: CQSYSVQTVSSL*SLIAMNGENRG Trigger: GCCCCTGTTCTCACCATTCATCGCTATCAGGCTGCATAGGGAGGAGACTGTCTGCACAGAATAACTCTGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR TCA 72 bp | TTTGAAGCCGAGGCTGGTCTCTGCACCCTATGTTCTTaGTGCCTCTGTTCTCTTCTACCCTGGTTCCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: FEAEAGLCTLCS*CLCSLLPWFQN Trigger: ATTCTGGAACCAGGGTAGAAGAGAACAGAGGCATCAAGAACATAGGGTGCAGAGACCAGCCTCGGCTTCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR CAA 90 bp | CTAGGTGGCAACTTTTCAACAAGGATAAAAACAGTGATGGTCTCACAAGGCCTCAGCCAAGGACAGATCTaGCATGTGTGGCCTCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: LGGNFSTRIKTVMVSQGLSQGQI*HVWPQE Trigger: TTCCTGAGGCCACACATGCAAGATCTGTCCTTGGCT...GAGGCCTTGTGAGACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CCA 72 bp | ATGTTTGGCCTTCACCTAGAAGGGCCCTCATCTTTCTaGCTATACCACATCAGCCAGACACATATGTACACA | + |
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Preference number: 3 (lower is better) Translates to: MFGLHLEGPSSF*LYHISQTHMYT Trigger: TGTGTACATATGTGTCTGGCTGATGTGGTATAGCCAGAAAGATGAGGGCCCTTCTAGGTGAAGGCCAAACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR TCA 72 bp | TACCGTCTCACCCTTCAGCTTGCTGGGAAATGCTTCTaGGAGTATTTTCATGCACCTGGAAGTTTTAAGAGA | + |
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Preference number: 3 (lower is better) Translates to: YRLTLQLAGKCF*EYFHAPGSFKR Trigger: TCTCTTAAAACTTCCAGGTGCATGAAAATACTCTCAGAAGCATTTCCCAGCAAGCTGAAGGGTGAGACGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR TCA 72 bp | AACATTGCAAATGGAGCCAGGCTATATTCTCCAGGCTaGCCCAACACAACAGATGAAATTGGCAAAAGAGCT | + |
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Preference number: 3 (lower is better) Translates to: NIANGARLYSPG*PNTTDEIGKRA Trigger: AGCTCTTTTGCCAATTTCATCTGTTGTGTTGGGTCAGCCTGGAGAATATAGCCTGGCTCCATTTGCAATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CCA 72 bp | GCTAGCTCAACACATCTTGGACAAGAACTTGCTAGGTaGCAACTTTTCAACAAGGATAAAAACAGTGATGGT | + |
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Preference number: 3 (lower is better) Translates to: ASSTHLGQELAR*QLFNKDKNSDG Trigger: ACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACCTAGCAAGTTCTTGTCCAAGATGTGTTGAGCTAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR GCA 72 bp | TCCTCCAAAACTTATAGTAAAATCCCTAAGCCTTACTaGTTCAAATGTGGCCTTCTTTGGAGATGGACTCTT | + |
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Preference number: 3 (lower is better) Translates to: SSKTYSKIPKPY*FKCGLLWRWTL Trigger: AAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCAGTAAGGCTTAGGGATTTTACTATAAGTTTTGGAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR CCA 72 bp | ATCCCTAAGCCTTACTGCTTCAAATGTGGCCTTCTTTaGAGATGGACTCTTTACAGGAAAATCAAAATGAAG | + |
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Preference number: 3 (lower is better) Translates to: IPKPYCFKCGLL*RWTLYRKIKMK Trigger: CTTCATTTTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCAGTAAGGCTTAGGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| 3UTR-3UTR CAA 90 bp | TTACTGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAAGTGTTATTAGATCTGTaGTCAGAGTTATTCTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: LLLQMWPSLEMDSLQENQVLLDL*SELFCA Trigger: TGCACAGAATAACTCTGACAACAGATCTAATAACAC...TTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCAGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| CDS-3UTR TCA 90 bp | TGTGGCCTCAGGAAGAGCCAATTCTGCAGACACCTTGACTGCAGACTTCCAAACGCTCTCCTCTACGCCTaGGGAAGGAGGCCAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: CGLRKSQFCRHLDCRLPNALLYA*GRRPRP Trigger: TGGCCTTGGCCTCCTTCCTCAGGCGTAGAGGAGAGC...GTTTGGAAGTCTGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGCCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
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| CDS-3UTR TCA 90 bp | GCCTCAGGAAGAGCCAATTCTGCAGACACCTTGACTGCAGACTTCCAAACTCTGAAGTGGGCACACTGCTaGGGGTGCTGTGTGCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ASGRANSADTLTADFQTLKWAHC*GCCVQV Trigger: CACCTGCACACAGCACCCTCAGCAGTGTGCCCACTT...CAGAGTTTGGAAGTCTGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR TCA 90 bp | GCCTCAGGAAGAGCCAATTCTGCAGACACCTTGACTGCAGACTTCCAAACTCTGCTGAGTTGTCTGACCTaGCTTCCACCTCCCCGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: ASGRANSADTLTADFQTLLSCLT*LPPPRP Trigger: AGGCCGGGGAGGTGGAAGTCAGGTCAGACAACTCAG...CAGAGTTTGGAAGTCTGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR TCA 90 bp | CAGAGTTATTCTGTGCAGACAGTCTCCTCCCTATGCAGCCTGATAGCGATGAATAGGTGGAGTCACAGCTaGCGCAGGCCCCCAGGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: QSYSVQTVSSLCSLIAMNRWSHS*RRPPGD Trigger: ATCTCCTGGGGGCCTGCGTCAGCTGTGACTCCACCT...ATTCATCGCTATCAGGCTGCATAGGGAGGAGACTGTCTGCACAGAATAACTCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR GCA 90 bp | GCTGACCAAAAATTCTCACGATTCTTTGAAGCCGAGGCTGGTCTCTGCACCCTAGCTGGCTCCTCTGGCTaGAGGTCAGTGCACAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: ADQKFSRFFEAEAGLCTLAGSSG*RSVHRR Trigger: TCTCCTGTGCACTGACCTGCAGCCAGAGGAGCCAGC...TAGGGTGCAGAGACCAGCCTCGGCTTCAAAGAATCGTGAGAATTTTTGGTCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR CCA 90 bp | GCCTCAGGAAGAGCCAATTCTGCAGACACCTTGACTGCAGACTTCCAAACTCTGAGAAACAGCAGAAGATaGCGCAGAGGCAGACCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: ASGRANSADTLTADFQTLRNSRR*RRGRPP Trigger: TGGGGGTCTGCCTCTGCGCCATCTTCTGCTGTTTCT...CAGAGTTTGGAAGTCTGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| 3UTR CAA 72 bp | TGTGTGGCCTCAGGAAGAGCCAATTCTGCAGACACCTaGACTGCAGACTTCCAAACTCTGTGGACAGCCACT | + |
|
Preference number: 4 (lower is better) Translates to: CVASGRANSADT*TADFQTLWTAT Trigger: AGTGGCTGTCCACAGAGTTTGGAAGTCTGCAGTCAAGGTGTCTGCAGAATTGGCTCTTCCTGAGGCCACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR TCA 90 bp | TTACTGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAACGCGGCGCGCTCTCCTaGGTGGGAGAACTGCGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LLLQMWPSLEMDSLQENQRGALS*VGELRS Trigger: GGAGCGCAGTTCTCCCACTCAGGAGAGCGCGCCGCG...TTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCAGTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR CCA 90 bp | GGTGGCAACTTTTCAACAAGGATAAAAACAGTGATGGTCTCACAAGGCCTCCATGTGCGCTGGCTCCTCTaGCTGCAGGTCAGTGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: GGNFSTRIKTVMVSQGLHVRWLL*LQVSAQ Trigger: CTGTGCACTGACCTGCAGCCAGAGGAGCCAGCGCAC...ATGGAGGCCTTGTGAGACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR CCA 90 bp | CTGTTGTCAGAGTTATTCTGTGCAGACAGTCTCCTCCCTATGCAGCCTGATAGCGGTTCGCCTGGCTTCTaGGCCTTTTCTCACAGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: LLSELFCADSLLPMQPDSGSPGF*AFSHRS Trigger: ACTTCTGTGAGAAAAGGCCCAGAAGCCAGGCGAACC...GCTATCAGGCTGCATAGGGAGGAGACTGTCTGCACAGAATAACTCTGACAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| 3UTR CAA 72 bp | ACTACCAGTGGGTTAAGGAGAAGCCAAGGACAGATCTaGCATGTGTGGCCTCAGGAAGAGCCAATTCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: TTSGLRRSQGQI*HVWPQEEPILQ Trigger: CTGCAGAATTGGCTCTTCCTGAGGCCACACATGCAAGATCTGTCCTTGGCTTCTCCTTAACCCACTGGTAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR CCA 90 bp | TGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAAAATGTCTGTCACGGGGCGGTaGGCGTGGGGAGAGTTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: CFKCGLLWRWTLYRKIKMSVTGR*AWGEFA Trigger: AGCAAACTCTCCCCACGCCCACCGCCCCGTGACAGA...CATTTTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR GCA 90 bp | CTAGGTGGCAACTTTTCAACAAGGATAAAAACAGTGATGGTCTCACAAGGCCTCCTGGCTGCAGGTCAGTaGACAGGAGACACAGGATTT | + |
|
Preference number: 4 (lower is better) Translates to: LGGNFSTRIKTVMVSQGLLAAGQ*TGDTGF Trigger: AAATCCTGTGTCTCCTGTGCACTGACCTGCAGCCAG...GAGGCCTTGTGAGACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR GCA 90 bp | GGTGGCAACTTTTCAACAAGGATAAAAACAGTGATGGTCTCACAAGGCCTCCATCTCAATCCTGGACCATaGTCAGATCCCTGGTGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: GGNFSTRIKTVMVSQGLHLNPGP*SDPWCL Trigger: AAGGCACCAGGGATCTGAGCATGGTCCAGGATTGAG...ATGGAGGCCTTGTGAGACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR CCA 90 bp | GCTAGGTGGCAACTTTTCAACAAGGATAAAAACAGTGATGGTCTCACAAGGCCTCCATGCTCAGATCCCTaGTGCCTTCCTGAGTTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: ARWQLFNKDKNSDGLTRPPCSDP*CLPELS Trigger: AGACAACTCAGGAAGGCACCAGGGATCTGAGCATGG...AGGCCTTGTGAGACCATCACTGTTTTTATCCTTGTTGAAAAGTTGCCACCTAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR GCA 90 bp | TGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAAAATGGGCAGACCCCCAGTGTaGAGTAGAGAGTCAGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: CFKCGLLWRWTLYRKIKMGRPPV*SRESAG Trigger: ACCAGCTGACTCTCTACTGCACACTGGGGGTCTGCC...CATTTTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS-3UTR GCA 90 bp | AACCCCGAATCTGCACATACACATACAAGTTACTTAAATCACAAATACATCCACCCTGAGTGGGAGAACTaGGCTCCGGGAAGCAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: NPESAHTHTSYLNHKYIHPEWEN*APGSRS Trigger: GCTTCTGCTTCCCGGAGCGCAGTTCTCCCACTCAGG...GTGGATGTATTTGTGATTTAAGTAACTTGTATGTGTATGTGCAGATTCGGGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| 3UTR CAA 72 bp | CCTGCTGAAAAGCTGACCAAAAATTCTCACGATTCTTaGAAGCCGAGGCTGGTCTCTGCACCCTATGTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: PAEKLTKNSHDS*KPRLVSAPYVL Trigger: AAGAACATAGGGTGCAGAGACCAGCCTCGGCTTCAAAGAATCGTGAGAATTTTTGGTCAGCTTTTCAGCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| 3UTR CAA 72 bp | AGATCGTGGGAACAACATAGGCTAGCTCAACACATCTaGGACAAGAACTTGCTAGGTGGCAACTTTTCAACA | + |
|
Preference number: 4 (lower is better) Translates to: RSWEQHRLAQHI*DKNLLGGNFST Trigger: TGTTGAAAAGTTGCCACCTAGCAAGTTCTTGTCCAAGATGTGTTGAGCTAGCCTATGTTGTTCCCACGATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS CCA 90 bp | GACGCGGTCACCTCGTCGCAAGCCTCTGTCACGGGGCGGTGGGCGTaGGGAGAGTTTGCTTGTGACCCACGTGGCCCGGCAGGCTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: DAVTSSQASVTGRWA*GEFACDPRGPAGWL Trigger: CAGCCAGCCTGCCGGGCCACGTGGGTCACAAGCAAACTCTCCCCACGCCCACCGCCCCGTGACAGAGGCTTGCGACGAGGTGACCGCGTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS TCA 90 bp | ACTGCGCTCCGGGAAGCAGAAGCTACACGTTTCCACAGGCTGGGGTaGCGCGGTCACCTCGTCGCAAGCCTCTGTCACGGGGCGGTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: TALREAEATRFHRLG*RGHLVASLCHGAVG Trigger: GCCCACCGCCCCGTGACAGAGGCTTGCGACGAGGTGACCGCGTCACCCCAGCCTGTGGAAACGTGTAGCTTCTGCTTCCCGGAGCGCAGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS TCA 90 bp | GTGCCCGCGAAGCCGTGTATCCCGAGCGAACGCGGCGCGCTCTCCTaGGTGGGAGAACTGCGCTCCGGGAAGCAGAAGCTACACGTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: VPAKPCIPSERGALS*VGELRSGKQKLHVS Trigger: GGAAACGTGTAGCTTCTGCTTCCCGGAGCGCAGTTCTCCCACTCAGGAGAGCGCGCCGCGTTCGCTCGGGATACACGGCTTCGCGGGCAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS CCA 90 bp | GGAGAACTGCGCTCCGGGAAGCAGAAGCTACACGTTTCCACAGGCTaGGGTGACGCGGTCACCTCGTCGCAAGCCTCTGTCACGGGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: GELRSGKQKLHVSTG*GDAVTSSQASVTGR Trigger: CCGCCCCGTGACAGAGGCTTGCGACGAGGTGACCGCGTCACCCCAGCCTGTGGAAACGTGTAGCTTCTGCTTCCCGGAGCGCAGTTCTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS CCA 90 bp | CGGCCTGTGGTCTCCCGAGCTCGGGCTGGAGGTTCGCCTGGCTTCTaGGCCTTTTCTCACAGAAGTGGGCACACTGCTGAGGGTGCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: RPVVSRARAGGSPGF*AFSHRSGHTAEGAV Trigger: CACAGCACCCTCAGCAGTGTGCCCACTTCTGTGAGAAAAGGCCCAGAAGCCAGGCGAACCTCCAGCCCGAGCTCGGGAGACCACAGGCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS TCA 90 bp | CTGGACCATGCTCAGATCCCTGGTGCCTTCCTGAGTTGTCTGACCTaGCTTCCACCTCCCCGGCCTGTGGTCTCCCGAGCTCGGGCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: LDHAQIPGAFLSCLT*LPPPRPVVSRARAG Trigger: TCCAGCCCGAGCTCGGGAGACCACAGGCCGGGGAGGTGGAAGTCAGGTCAGACAACTCAGGAAGGCACCAGGGATCTGAGCATGGTCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS GCA 90 bp | TGGTCGCTACTTAGCCTCAATCCTGGACCATGCTCAGATCCCTGGTaGCTTCCTGAGTTGTCTGACCTGACTTCCACCTCCCCGGCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: WSLLSLNPGPCSDPW*LPELSDLTSTSPAC Trigger: ACAGGCCGGGGAGGTGGAAGTCAGGTCAGACAACTCAGGAAGGCACCAGGGATCTGAGCATGGTCCAGGATTGAGGCTAAGTAGCGACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS GCA 90 bp | CCACCAAGAAACAGCAGAAGATGGCGCAGAGGCAGACCCCCAGTGTaGAGTAGAGAGTCAGCTGGTCGCTACTTAGCCTCAATCCTGGAC | + |
|
Preference number: 5 (lower is better) Translates to: PPRNSRRWRRGRPPV*SRESAGRYLASILD Trigger: GTCCAGGATTGAGGCTAAGTAGCGACCAGCTGACTCTCTACTGCACACTGGGGGTCTGCCTCTGCGCCATCTTCTGCTGTTTCTTGGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS GCA 90 bp | TGGTCGCTACTTAGCCTCAATCCTGGACCATGCTCAGATCCCTGGTaGCTTCCTGAGTTGTCTGACCTGCCTTGCTCTTTTCGGCAATTG | + |
|
Preference number: 5 (lower is better) Translates to: WSLLSLNPGPCSDPW*LPELSDLPCSFRQL Trigger: CAATTGCCGAAAAGAGCAAGGCAGGTCAGACAACTCAGGAAGGCACCAGGGATCTGAGCATGGTCCAGGATTGAGGCTAAGTAGCGACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146033.8 |
||
| CDS CCA 90 bp | CAATTGATGAATTTGCAGAAGTCTGTACAGGTGCGCTGGCTCCTCTaGCTGCAGGTCAGTGCACAGGAGACACAGGATTTCCTTGAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: QLMNLQKSVQVRWLL*LQVSAQETQDFLEE Trigger: CTCCTCAAGGAAATCCTGTGTCTCCTGTGCACTGACCTGCAGCCAGAGGAGCCAGCGCACCTGTACAGACTTCTGCAAATTCATCAATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 ENSMUST00000146033.8 |
||
| CDS GCA 90 bp | CCATGCTCAGATCCCTGGTGCCTTCCTGAGTTGTCTGACCTGCCTTaGTCTTTTCGGCAATTGATGAATTTGCAGAAGTCTGTACAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: PCSDPWCLPELSDLP*SFRQLMNLQKSVQV Trigger: CACCTGTACAGACTTCTGCAAATTCATCAATTGCCGAAAAGAGCAAGGCAGGTCAGACAACTCAGGAAGGCACCAGGGATCTGAGCATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146033.8 |
||
| CDS-3UTR CAA 90 bp | TTACTGCTTCAAATGTGGCCTTCTTTGGAGATGGACTCTTTACAGGAAAATCAACCAGGCCGCCTACTGTaGCACGCATACAGGGCTGCG | + |
|
Preference number: 5 (lower is better) Translates to: LLLQMWPSLEMDSLQENQPGRLL*HAYRAA Trigger: CGCAGCCCTGTATGCGTGCAACAGTAGGCGGCCTGG...TTGATTTTCCTGTAAAGAGTCCATCTCCAAAGAAGGCCACATTTGAAGCAGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010286.8 |
||
| CDS CAA 90 bp | CCTCGTCGCAAGCCTCTGTCACGGGGCGGTGGGCGTGGGGAGAGTTaGCTTGTGACCCACGTGGCCCGGCAGGCTGGCTGGGTAGTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: PRRKPLSRGGGRGES*LVTHVARQAGWVVA Trigger: AGCCACTACCCAGCCAGCCTGCCGGGCCACGTGGGTCACAAGCAAACTCTCCCCACGCCCACCGCCCCGTGACAGAGGCTTGCGACGAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS GCA 72 bp | CTACTGTTGCACGCATACAGGGCTGCGGGGCGGCAGTaGCCGCGAAGCCGTGTATCCCGAGCGAACGCGGCG | + |
|
Preference number: 6 (lower is better) Translates to: LLLHAYRAAGRQ*PRSRVSRANAA Trigger: CGCCGCGTTCGCTCGGGATACACGGCTTCGCGGGCACTGCCGCCCCGCAGCCCTGTATGCGTGCAACAGTAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS CAA 72 bp | AAGCCTCTGTCACGGGGCGGTGGGCGTGGGGAGAGTTaGCTTGTGACCCACGTGGCCCGGCAGGCTGGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: KPLSRGGGRGES*LVTHVARQAGW Trigger: CCAGCCAGCCTGCCGGGCCACGTGGGTCACAAGCAAACTCTCCCCACGCCCACCGCCCCGTGACAGAGGCTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS CCA 72 bp | ACCTCGTCGCAAGCCTCTGTCACGGGGCGGTGGGCGTaGGGAGAGTTTGCTTGTGACCCACGTGGCCCGGCA | + |
|
Preference number: 6 (lower is better) Translates to: TSSQASVTGRWA*GEFACDPRGPA Trigger: TGCCGGGCCACGTGGGTCACAAGCAAACTCTCCCCACGCCCACCGCCCCGTGACAGAGGCTTGCGACGAGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS CCA 72 bp | TCCACCTCCCCGGCCTGTGGTCTCCCGAGCTCGGGCTaGAGGTTCGCCTGGCTTCTGGGCCTTTTCTCACAG | + |
|
Preference number: 6 (lower is better) Translates to: STSPACGLPSSG*RFAWLLGLFSQ Trigger: CTGTGAGAAAAGGCCCAGAAGCCAGGCGAACCTCCAGCCCGAGCTCGGGAGACCACAGGCCGGGGAGGTGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS TCA 72 bp | CGGGAAGCAGAAGCTACACGTTTCCACAGGCTGGGGTaGCGCGGTCACCTCGTCGCAAGCCTCTGTCACGGG | + |
|
Preference number: 6 (lower is better) Translates to: REAEATRFHRLG*RGHLVASLCHG Trigger: CCCGTGACAGAGGCTTGCGACGAGGTGACCGCGTCACCCCAGCCTGTGGAAACGTGTAGCTTCTGCTTCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS TCA 72 bp | AAGCCGTGTATCCCGAGCGAACGCGGCGCGCTCTCCTaGGTGGGAGAACTGCGCTCCGGGAAGCAGAAGCTA | + |
|
Preference number: 6 (lower is better) Translates to: KPCIPSERGALS*VGELRSGKQKL Trigger: TAGCTTCTGCTTCCCGGAGCGCAGTTCTCCCACTCAGGAGAGCGCGCCGCGTTCGCTCGGGATACACGGCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS CCA 72 bp | GCCTGTGGTCTCCCGAGCTCGGGCTGGAGGTTCGCCTaGCTTCTGGGCCTTTTCTCACAGAAGTGGGCACAC | + |
|
Preference number: 6 (lower is better) Translates to: ACGLPSSGWRFA*LLGLFSQKWAH Trigger: GTGTGCCCACTTCTGTGAGAAAAGGCCCAGAAGCCAGGCGAACCTCCAGCCCGAGCTCGGGAGACCACAGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS CCA 72 bp | CGCTCCGGGAAGCAGAAGCTACACGTTTCCACAGGCTaGGGTGACGCGGTCACCTCGTCGCAAGCCTCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: RSGKQKLHVSTG*GDAVTSSQASV Trigger: GACAGAGGCTTGCGACGAGGTGACCGCGTCACCCCAGCCTGTGGAAACGTGTAGCTTCTGCTTCCCGGAGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS TCA 72 bp | CGGCAGGCTGGCTGGGTAGTGGCTCTCCTCTACGCCTaGGGAAGGAGGCCAAGGCCACCAAGAAACAGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: RQAGWVVALLYA*GRRPRPPRNSR Trigger: TCTGCTGTTTCTTGGTGGCCTTGGCCTCCTTCCTCAGGCGTAGAGGAGAGCCACTACCCAGCCAGCCTGCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 |
||
| CDS CCA 72 bp | GTCTCCCGAGCTCGGGCTGGAGGTTCGCCTGGCTTCTaGGCCTTTTCTCACAGAAGTGGGCACACTGCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: VSRARAGGSPGF*AFSHRSGHTAE Trigger: CTCAGCAGTGTGCCCACTTCTGTGAGAAAAGGCCCAGAAGCCAGGCGAACCTCCAGCCCGAGCTCGGGAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS GCA 72 bp | GTCAGCTGGTCGCTACTTAGCCTCAATCCTGGACCATaGTCAGATCCCTGGTGCCTTCCTGAGTTGTCTGAC | + |
|
Preference number: 6 (lower is better) Translates to: VSWSLLSLNPGP*SDPWCLPELSD Trigger: GTCAGACAACTCAGGAAGGCACCAGGGATCTGAGCATGGTCCAGGATTGAGGCTAAGTAGCGACCAGCTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 ENSMUST00000146033.8 |
||
| CDS CCA 72 bp | CTACTTAGCCTCAATCCTGGACCATGCTCAGATCCCTaGTGCCTTCCTGAGTTGTCTGACCTGACTTCCACC | + |
|
Preference number: 6 (lower is better) Translates to: LLSLNPGPCSDP*CLPELSDLTST Trigger: GGTGGAAGTCAGGTCAGACAACTCAGGAAGGCACCAGGGATCTGAGCATGGTCCAGGATTGAGGCTAAGTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS CCA 72 bp | CTACTTAGCCTCAATCCTGGACCATGCTCAGATCCCTaGTGCCTTCCTGAGTTGTCTGACCTGCCTTGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LLSLNPGPCSDP*CLPELSDLPCS Trigger: AGAGCAAGGCAGGTCAGACAACTCAGGAAGGCACCAGGGATCTGAGCATGGTCCAGGATTGAGGCTAAGTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146033.8 |
||
| CDS CAA 72 bp | GACGCAGGCCCCCAGGAGATGGTCGTAGTACCTGCCTaGCTCTTTTCGGCAATTGATGAATTTGCAGAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: DAGPQEMVVVPA*LFSAIDEFAEV Trigger: GACTTCTGCAAATTCATCAATTGCCGAAAAGAGCAAGGCAGGTACTACGACCATCTCCTGGGGGCCTGCGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS CAA 90 bp | GTCACAGCTGACGCAGGCCCCCAGGAGATGGTCGTAGTACCTGCCTaGCTCTTTTCGGCAATTGATGAATTTGCAGAAGTCTGTACAGGT | + |
|
Preference number: 6 (lower is better) Translates to: VTADAGPQEMVVVPA*LFSAIDEFAEVCTG Trigger: ACCTGTACAGACTTCTGCAAATTCATCAATTGCCGAAAAGAGCAAGGCAGGTACTACGACCATCTCCTGGGGGCCTGCGTCAGCTGTGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000010286.8 ENSMUST00000101103.4 ENSMUST00000139422.8 |
||
| CDS CAA 90 bp | TGGTGCCTTCCTGAGTTGTCTGACCTGCCTTGCTCTTTTCGGCAATaGATGAATTTGCAGAAGTCTGTACAGGTGCGCTGGCTCCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: WCLPELSDLPCSFRQ*MNLQKSVQVRWLLW Trigger: CCAGAGGAGCCAGCGCACCTGTACAGACTTCTGCAAATTCATCAATTGCCGAAAAGAGCAAGGCAGGTCAGACAACTCAGGAAGGCACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146033.8 |
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| CDS CAA 72 bp | CCTGAGTTGTCTGACCTGCCTTGCTCTTTTCGGCAATaGATGAATTTGCAGAAGTCTGTACAGGTGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PELSDLPCSFRQ*MNLQKSVQVRW Trigger: CCAGCGCACCTGTACAGACTTCTGCAAATTCATCAATTGCCGAAAAGAGCAAGGCAGGTCAGACAACTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146033.8 |
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