Pregenerated sensors for TNFRSF12A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023905Ensembl transcript IDs: ENSMUST00000024698.10, ENSMUST00000167059.9, ENSMUST00000233428.2, ENSMUST00000233814.2
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACTCCAGAATGAATGAATGGACGACGAGTGGGCCCCAGCGCGGGTaGTCCTCACTGGATCAGTGCCACACCTGGGCAGCCCTCTCCACC | + |
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Preference number: 1 (lower is better) Translates to: DSRMNEWTTSGPQRG*SSLDQCHTWAALST Trigger: GGTGGAGAGGGCTGCCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGCGCTGGGGCCCACTCGTCGTCCATTCATTCATTCTGGAGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR TCA 90 bp | GACACCTTGGAAGGCTCCCTGAACTCTAAGCCCAGTCCTTGGAGGTaGATCACCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGG | + |
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Preference number: 1 (lower is better) Translates to: DTLEGSLNSKPSPWR*ITTSPHPLVVERVW Trigger: CCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGTGATTCACCTCCAAGGACTGGGCTTAGAGTTCAGGGAGCCTTCCAAGGTGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR TCA 90 bp | ATTCCCTTGTGCAAATGCTGCAGTTCCTTAGTATGGGTCGCTTTGTaGCCCAGATTGAGGCTCTCTGTCTGCCCCAGACCCAGAGATAGG | + |
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Preference number: 1 (lower is better) Translates to: IPLCKCCSSLVWVAL*PRLRLSVCPRPRDR Trigger: CCTATCTCTGGGTCTGGGGCAGACAGAGAGCCTCAATCTGGGTCACAAAGCGACCCATACTAAGGAACTGCAGCATTTGCACAAGGGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR CCA 90 bp | CAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTGTaGGGAACAAGAGATTCCCTTGTGCAAATGCTGCAGTTCCTTAGT | + |
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Preference number: 1 (lower is better) Translates to: QCCVCPSSQPDCQDL*GTRDSLVQMLQFLS Trigger: ACTAAGGAACTGCAGCATTTGCACAAGGGAATCTCTTGTTCCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | CTTGGGAGATGGTTGTTTCCGTGTGTACTGGGGCCAGCCCTCCCAGAGGGCCAGGCCCCTCCGAGTGGGTaGGACCCAGTGTTGTGTCTG | + |
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Preference number: 2 (lower is better) Translates to: LGRWLFPCVLGPALPEGQAPPSG*DPVLCL Trigger: CAGACACAACACTGGGTCCCACCCACTCGGAGGGGC...CTGGCCCTCTGGGAGGGCTGGCCCCAGTACACACGGAAACAACCATCTCCCAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | CCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGGGCGGGTGCTCCTCACTaGATCAGTGCCACACCTGGG | + |
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Preference number: 2 (lower is better) Translates to: PPRPTPLWLKESGSASVWAGAPH*ISATPG Trigger: CCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGC...CCAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR CAA 90 bp | TCAGGGAGTGGCATTATAGCCCCTCCGAGTGGGTGGGACCCAGTGTaGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: SGSGIIAPPSGWDPV*CLPLKSARLPGLVG Trigger: CCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGGGGCTATAATGCCACTCCCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | GGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTCGCCCCACCCCCTTGTaGTTGAAAGAGTCTGGCTCG | + |
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Preference number: 2 (lower is better) Translates to: GWDPVLCLPLKSARLPGLRPTPL*LKESGS Trigger: CGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCG...AAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | ACCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGCGCCCCACCCCCTTGTaGTTGAAAGAGTCTGGCTCG | + |
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Preference number: 2 (lower is better) Translates to: TTSPHPLVVERVWLGFCLRPTPL*LKESGS Trigger: CGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCG...CAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR-3UTR TCA 90 bp | CCTCCGAGTGGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGCCTTGGAAGGCTCCCTaGACTCTAAGCCCAGTCCTT | + |
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Preference number: 2 (lower is better) Translates to: PPSGWDPVLCLPLKSARLPWKAP*TLSPVL Trigger: AAGGACTGGGCTTAGAGTTCAGGGAGCCTTCCAAGG...CAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | GGCTCTCTGTCTGCCCCAGACCCAGAGATAGGGCAATTGGACACCTTGGAAGGCCGCCCCACCCCCTTGTaGTTGAAAGAGTCTGGCTCG | + |
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Preference number: 2 (lower is better) Translates to: GSLSAPDPEIGQLDTLEGRPTPL*LKESGS Trigger: CGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCG...GCCTTCCAAGGTGTCCAATTGCCCTATCTCTGGGTCTGGGGCAGACAGAGAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR GCA 90 bp | CCTTGGGAGATGGTTGTTTCCGTGTGTACTGGGGCCAGCCCTCCCAGAGGGCCATCAAGTCAGCCAGACTaGCAGGACTTGTGGGGAACA | + |
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Preference number: 2 (lower is better) Translates to: PWEMVVSVCTGASPPRGPSSQPD*QDLWGT Trigger: TGTTCCCCACAAGTCCTGGCAGTCTGGCTGACTTGA...TGGCCCTCTGGGAGGGCTGGCCCCAGTACACACGGAAACAACCATCTCCCAAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCCCTCCGAGTGGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGGACTGCCAGGACTTGTaGGGAACAAGAGATTCCCTT | + |
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Preference number: 2 (lower is better) Translates to: SPSEWVGPSVVSAPQVSQDCQDL*GTRDSL Trigger: AAGGGAATCTCTTGTTCCCCACAAGTCCTGGCAGTC...CTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGGGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR TCA 90 bp | GGGGCCAGCCCTCCCAGAGGGCCAGCCCCCTTAGTGTTAAGAACAGGTCTGTCAAGGCTGACTCCAGAATaGATGAATGGACGACGAGTG | + |
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Preference number: 2 (lower is better) Translates to: GASPPRGPAPLVLRTGLSRLTPE*MNGRRV Trigger: CACTCGTCGTCCATTCATTCATTCTGGAGTCAGCCT...TGACAGACCTGTTCTTAACACTAAGGGGGCTGGCCCTCTGGGAGGGCTGGCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | GGTGAATCACCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCCAGAATGAATGAATaGACGACGAGTGGGCCCCAG | + |
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Preference number: 2 (lower is better) Translates to: GESPPRPTPLWLKESGSASRMNE*TTSGPQ Trigger: CTGGGGCCCACTCGTCGTCCATTCATTCATTCTGGA...AGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGTGATTCACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | AGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTGTGGGGAACAAGGCTCGGCTTCTGTCTaGAAGGCCAGGCTGACTCCA | + |
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Preference number: 2 (lower is better) Translates to: SVVSAPQVSQTARTCGEQGSASV*KARLTP Trigger: TGGAGTCAGCCTGGCCTTCCAGACAGAAGCCGAGCC...TTGTTCCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTGGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGGTGGTTGAAAGAGTCTaGCTCGGCTTCTGTCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: EWVGPSVVSAPQVSQTARVVERV*LGFCLE Trigger: TTCCAGACAGAAGCCGAGCCAGACTCTTTCAACCAC...CCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR TCA 90 bp | GGTGAATCACCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTAGGCTGACTCCAGAATaGATGAATGGACGACGAGTG | + |
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Preference number: 2 (lower is better) Translates to: GESPPRPTPLWLKESGSARLTPE*MNGRRV Trigger: CACTCGTCGTCCATTCATTCATTCTGGAGTCAGCCT...AGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGTGATTCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR-3UTR TCA 90 bp | ACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGGAAAGGCTGACTCCAGAATaGATGAATGGACGACGAGTG | + |
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Preference number: 2 (lower is better) Translates to: TSPHPLVVERVWLGFCLERLTPE*MNGRRV Trigger: CACTCGTCGTCCATTCATTCATTCTGGAGTCAGCCT...TTCCAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR-3UTR TCA 90 bp | AGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTGTGGGGAACAACCTTGGAAGGCTCCCTaGACTCTAAGCCCAGTCCTT | + |
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Preference number: 2 (lower is better) Translates to: SVVSAPQVSQTARTCGEQPWKAP*TLSPVL Trigger: AAGGACTGGGCTTAGAGTTCAGGGAGCCTTCCAAGG...TTGTTCCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGTTCCTTAGTATGGGTCGCTTTGTGACCCAGATTGAGGCTCTCTGTCTGTCCTCACTGGATCAGTaGCACACCTGGGCAGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: LQFLSMGRFVTQIEALCLSSLDQ*HTWAAL Trigger: GAGGGCTGCCCAGGTGTGGCACTGATCCAGTGAGGA...CAGACAGAGAGCCTCAATCTGGGTCACAAAGCGACCCATACTAAGGAACTGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | GATTCCCTTGTGCAAATGCTGCAGTTCCTTAGTATGGGTCGCTTTGTGACCCAGGCGGGTGCTCCTCACTaGATCAGTGCCACACCTGGG | + |
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Preference number: 2 (lower is better) Translates to: DSLVQMLQFLSMGRFVTQAGAPH*ISATPG Trigger: CCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGC...CTGGGTCACAAAGCGACCCATACTAAGGAACTGCAGCATTTGCACAAGGGAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | GATTCCCTTGTGCAAATGCTGCAGTTCCTTAGTATGGGTCGCTTTGTGACCCAGTCCAGAATGAATGAATaGACGACGAGTGGGCCCCAG | + |
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Preference number: 2 (lower is better) Translates to: DSLVQMLQFLSMGRFVTQSRMNE*TTSGPQ Trigger: CTGGGGCCCACTCGTCGTCCATTCATTCATTCTGGA...CTGGGTCACAAAGCGACCCATACTAAGGAACTGCAGCATTTGCACAAGGGAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR TCA 90 bp | ACTTGTGGGGAACAAGAGATTCCCTTGTGCAAATGCTGCAGTTCCTTAGTATGGGTATGGGTCGCTTTGTaGCCCAGATTGAGGCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: TCGEQEIPLCKCCSSLVWVWVAL*PRLRLS Trigger: AGAGAGCCTCAATCTGGGTCACAAAGCGACCCATAC...CCATACTAAGGAACTGCAGCATTTGCACAAGGGAATCTCTTGTTCCCCACAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR CCA 90 bp | TTTATTAATAAGTCTCCCTCCCCTCCAAACATTATCCCCACAATAAATATCACCTCCAGAATGAATGAATaGACGACGAGTGGGCCCCAG | + |
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Preference number: 2 (lower is better) Translates to: FINKSPSPPNIIPTINITSRMNE*TTSGPQ Trigger: CTGGGGCCCACTCGTCGTCCATTCATTCATTCTGGA...GGTGATATTTATTGTGGGGATAATGTTTGGAGGGGAGGGAGACTTATTAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024698.10 |
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| 3UTR CCA 72 bp | GGACGACGAGTGGGCCCCAGCGCGGGTGCTCCTCACTaGATCAGTGCCACACCTGGGCAGCCCTCTCCACCA | + |
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Preference number: 3 (lower is better) Translates to: GRRVGPSAGAPH*ISATPGQPSPP Trigger: TGGTGGAGAGGGCTGCCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGCGCTGGGGCCCACTCGTCGTCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR-3UTR CAA 90 bp | CCCCTCCGAGTGGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACCCCACCCCCTTGTGGTaGAAAGAGTCTGGCTCGGCT | + |
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Preference number: 3 (lower is better) Translates to: PLRVGGTQCCVCPSSQPDPTPLW*KESGSA Trigger: AGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGG...GTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR CCA 72 bp | ACCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTaGCTCGGCTTCTGTCTGGAAGGCCAGGCTGACTCC | + |
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Preference number: 3 (lower is better) Translates to: TTSPHPLVVERV*LGFCLEGQADS Trigger: GGAGTCAGCCTGGCCTTCCAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCCCTCCGAGTGGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGCCAGACTGCCAGGACTaGTGGGGAACAAGAGATTCC | + |
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Preference number: 3 (lower is better) Translates to: SPSEWVGPSVVSAPQVSQPDCQD*WGTRDS Trigger: GGAATCTCTTGTTCCCCACAAGTCCTGGCAGTCTGG...CTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGGGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR TCA 72 bp | TCGGCTTCTGTCTGGAAGGCCAGGCTGACTCCAGAATaGATGAATGGACGACGAGTGGGCCCCAGCGCGGGT | + |
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Preference number: 3 (lower is better) Translates to: SASVWKARLTPE*MNGRRVGPSAG Trigger: ACCCGCGCTGGGGCCCACTCGTCGTCCATTCATTCATTCTGGAGTCAGCCTGGCCTTCCAGACAGAAGCCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR CCA 72 bp | TGTCTGGAAGGCCAGGCTGACTCCAGAATGAATGAATaGACGACGAGTGGGCCCCAGCGCGGGTGCTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: CLEGQADSRMNE*TTSGPQRGCSS Trigger: TGAGGAGCACCCGCGCTGGGGCCCACTCGTCGTCCATTCATTCATTCTGGAGTCAGCCTGGCCTTCCAGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR-3UTR CAA 90 bp | GGGGCCAGCCCTCCCAGAGGGCCAGCCCCCTTAGTGTTAAGAACAGGTCTGTCAGGGCAATTGGACACCTaGGAAGGCTCCCTGAACTCT | + |
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Preference number: 3 (lower is better) Translates to: GASPPRGPAPLVLRTGLSGQLDT*EGSLNS Trigger: AGAGTTCAGGGAGCCTTCCAAGGTGTCCAATTGCCC...TGACAGACCTGTTCTTAACACTAAGGGGGCTGGCCCTCTGGGAGGGCTGGCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR CCA 72 bp | AACTCAGGGAGTGGCATTATAGCCCCTCCGAGTGGGTaGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: NSGSGIIAPPSG*DPVLCLPLKSA Trigger: GGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGGGGCTATAATGCCACTCCCTGAGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR-3UTR CAA 90 bp | GACCCAGAGATAGGGCAATTGGACACCTTGGAAGGCTCCCTGAACTCTAAGCCCCCCACCCCCTTGTGGTaGAAAGAGTCTGGCTCGGCT | + |
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Preference number: 3 (lower is better) Translates to: DPEIGQLDTLEGSLNSKPPTPLW*KESGSA Trigger: AGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGG...GGGCTTAGAGTTCAGGGAGCCTTCCAAGGTGTCCAATTGCCCTATCTCTGGGTC 58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR CAA 90 bp | TCCCAGAGGGCCAGCCCCCTTAGTGTTAAGAACAGGTCTGTCAATCTGACCCACGGGTGGGACCCAGTGTaGTGTCTGCCCCTCAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SQRASPLSVKNRSVNLTHGWDPV*CLPLKS Trigger: TGACTTGAGGGGCAGACACAACACTGGGTCCCACCC...GTGGGTCAGATTGACAGACCTGTTCTTAACACTAAGGGGGCTGGCCCTCTGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR CCA 72 bp | CTTGGAGGTGAATCACCACCTCGCCCCACCCCCTTGTaGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LGGESPPRPTPL*LKESGSASVWK Trigger: CTTCCAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGTGATTCACCTCCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| 3UTR CCA 72 bp | CAATCTGACCCACTCCTAGGGCTAAAACTCAGGGAGTaGCATTATAGCCCCTCCGAGTGGGTGGGACCCAGT | + |
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Preference number: 3 (lower is better) Translates to: QSDPLLGLKLRE*HYSPSEWVGPS Trigger: ACTGGGTCCCACCCACTCGGAGGGGCTATAATGCCACTCCCTGAGTTTTAGCCCTAGGAGTGGGTCAGATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR GCA 72 bp | ACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTaGCAGGACTTGTGGGGAACAAGAGATTCCCTTGTG | + |
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Preference number: 3 (lower is better) Translates to: TQCCVCPSSQPD*QDLWGTRDSLV Trigger: CACAAGGGAATCTCTTGTTCCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR CCA 72 bp | GTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTGTaGGGAACAAGAGATTCCCTTGTGCAAATGCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: VCPSSQPDCQDL*GTRDSLVQMLQ Trigger: CTGCAGCATTTGCACAAGGGAATCTCTTGTTCCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR TCA 72 bp | TGCAAATGCTGCAGTTCCTTAGTATGGGTCGCTTTGTaGCCCAGATTGAGGCTCTCTGTCTGCCCCAGACCC | + |
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Preference number: 3 (lower is better) Translates to: CKCCSSLVWVAL*PRLRLSVCPRP Trigger: GGGTCTGGGGCAGACAGAGAGCCTCAATCTGGGTCACAAAGCGACCCATACTAAGGAACTGCAGCATTTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| 3UTR-3UTR CAA 90 bp | TCCCAGAGGGCCAGCCCCCTTAGTGTTAAGAACAGGTCTGTCAATCTGACCCACGAACAAGAGATTCCCTaGTGCAAATGCTGCAGTTCC | + |
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Preference number: 3 (lower is better) Translates to: SQRASPLSVKNRSVNLTHEQEIP*CKCCSS Trigger: GGAACTGCAGCATTTGCACAAGGGAATCTCTTGTTC...GTGGGTCAGATTGACAGACCTGTTCTTAACACTAAGGGGGCTGGCCCTCTGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR GCA 72 bp | ACTGCCAGGACTTGTGGGGAACAAGAGATTCCCTTGTaGAAATGCTGCAGTTCCTTAGTATGGGTCGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: TARTCGEQEIPL*KCCSSLVWVAL Trigger: CAAAGCGACCCATACTAAGGAACTGCAGCATTTGCACAAGGGAATCTCTTGTTCCCCACAAGTCCTGGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| CDS-3UTR GCA 90 bp | AGCGCGGGTGCTCCTCACTGGATCAGTGCCACACCTGGGCAGCCCTCTCCACCAGAAGTGGGCAGGAGGTaGTGCGGCGCATCCCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SAGAPHWISATPGQPSPPEVGRR*CGASQA Trigger: TGCCTGGGATGCGCCGCAGCACCTCCTGCCCACTTC...TGGTGGAGAGGGCTGCCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGCGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
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| CDS-3UTR GCA 90 bp | AGCCCCTCCGAGTGGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGGTGGGCAGGAGGTGCTaGGGCGCCTGGTGCTTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: SPSEWVGPSVVSAPQVSQVGRRC*GAWCLL Trigger: GAGCAAGCACCAGGCGCCGCAGCACCTCCTGCCCAC...CTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGGGGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167059.9 |
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| CDS-3UTR GCA 90 bp | ACCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGTTGCTGCCTGGTGCTTaGTCCCCGGCCGCGGCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: TTSPHPLVVERVWLGFCLLLPGA*SPAAAR Trigger: GCGCGCCGCGGCCGGGGAGCAAGCACCAGGCAGCAA...CAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
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| CDS-3UTR CCA 90 bp | GACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTGTGGGGAGGTGCTGCGGCGCCTaGTGCTTGCTCCCCGGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: DPVLCLPLKSARLPGLVGRCCGA*CLLPGR Trigger: GCGGCCGGGGAGCAAGCACCAGGCGCCGCAGCACCT...CCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000167059.9 |
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| CDS-3UTR GCA 90 bp | AGTGGGCCCCAGCGCGGGTGCTCCTCACTGGATCAGTGCCACACCTGGGCAGCCAAGAAGCGCAGTCCATaGACTTGTCGAGGTCCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: SGPQRGCSSLDQCHTWAAKKRSP*TCRGPR Trigger: GCGCGGACCTCGACAAGTGCATGGACTGCGCTTCTT...GGCTGCCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGCGCTGGGGCCCACT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| CDS-3UTR CCA 90 bp | CCCCTCCGAGTGGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACCACAGTAGCCTGAAGTaGGCAGGAGGTGCTGCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: PLRVGGTQCCVCPSSQPDHSSLK*AGGAAA Trigger: CGCCGCAGCACCTCCTGCCCACTTCAGGCTACTGTG...GTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 |
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| CDS-3UTR GCA 90 bp | CAGCGCGGGTGCTCCTCACTGGATCAGTGCCACACCTGGGCAGCCCTCTCCACCTTCCCACTTGGAACTTaGTGCCTGGTGCTTGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: QRGCSSLDQCHTWAALSTFPLGT*CLVLAP Trigger: GGGAGCAAGCACCAGGCAGCAAGTTCCAAGTGGGAA...GGTGGAGAGGGCTGCCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGCGCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
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| CDS-3UTR GCA 90 bp | GGCCAGCCCTCCCAGAGGGCCAGCCCCCTTAGTGTTAAGAACAGGTCTGTCAATGAAGTGGGCAGGAGGTaGTGCGGCGCATCCCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: GQPSQRASPLSVKNRSVNEVGRR*CGASQA Trigger: TGCCTGGGATGCGCCGCAGCACCTCCTGCCCACTTC...ATTGACAGACCTGTTCTTAACACTAAGGGGGCTGGCCCTCTGGGAGGGCTGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024698.10 |
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| CDS-3UTR CCA 90 bp | CCTCCGAGTGGGTGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGGCTGTGTGGTCGCGCTaGACAAGAAGCGCAGTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: PPSGWDPVLCLPLKSARLAVWSR*TRSAVH Trigger: ATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGC...CAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| CDS-3UTR CCA 90 bp | ACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGGAACACAGTAGCCTGAAGTaGGCAGGAGGTGCTGCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: TSPHPLVVERVWLGFCLEHSSLK*AGGAAA Trigger: CGCCGCAGCACCTCCTGCCCACTTCAGGCTACTGTG...TTCCAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 |
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| 3UTR CAA 72 bp | GGCATTATAGCCCCTCCGAGTGGGTGGGACCCAGTGTaGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GIIAPPSGWDPV*CLPLKSARLPG Trigger: TCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCACCCACTCGGAGGGGCTATAATGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| CDS-3UTR TCA 90 bp | GGCCCCAGCGCGGGTGCTCCTCACTGGATCAGTGCCACACCTGGGCAGCCCTCTACTGCGGATAAAACTTaGGACCTTTCCCACTTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: GPSAGAPHWISATPGQPSTADKT*DLSHLE Trigger: TTCCAAGTGGGAAAGGTCTCAAGTTTTATCCGCAGT...AGAGGGCTGCCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGCGCTGGGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
||
| CDS-3UTR GCA 90 bp | TGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTGTGGGGAACAAGAGATGAAGTGGGCAGGAGGTaGTGCGGCGCCTGGTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: CVCPSSQPDCQDLWGTRDEVGRR*CGAWCL Trigger: CAAGCACCAGGCGCCGCAGCACCTCCTGCCCACTTC...ATCTCTTGTTCCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167059.9 |
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| CDS-3UTR CCA 90 bp | ACCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGGCTGTGTGGTCGCGCTaGACAAGAAGCGCAGTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: TTSPHPLVVERVWLGFCLAVWSR*TRSAVH Trigger: ATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGC...CAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 ENSMUST00000233814.2 |
||
| 3UTR CAA 72 bp | GTCCTTGGAGGTGAATCACCACCTCGCCCCACCCCCTaGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VLGGESPPRPTP*WLKESGSASVW Trigger: CCAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGTGATTCACCTCCAAGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| CDS-3UTR GCA 90 bp | TGGGACCCAGTGTTGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTTGTGAAGAAGCGCAGTCCATaGACTTGTCGAGGTCCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: WDPVLCLPLKSARLPGLVKKRSP*TCRGPR Trigger: GCGCGGACCTCGACAAGTGCATGGACTGCGCTTCTT...CACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACAACACTGGGTCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
||
| CDS-3UTR CCA 90 bp | TGTCTGGAAGGCCAGGCTGACTCCAGAATGAATGAATGGACGACGAGTGGGCCCGATCAGTGCCACACCTaGGCAGCCCTCTCCACCAGT | + |
|
Preference number: 4 (lower is better) Translates to: CLEGQADSRMNEWTTSGPDQCHT*AALSTS Trigger: ACTGGTGGAGAGGGCTGCCCAGGTGTGGCACTGATC...GGGCCCACTCGTCGTCCATTCATTCATTCTGGAGTCAGCCTGGCCTTCCAGACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 |
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| 3UTR CAA 72 bp | GGCTCTCTGTCTGCCCCAGACCCAGAGATAGGGCAATaGGACACCTTGGAAGGCTCCCTGAACTCTAAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: GSLSAPDPEIGQ*DTLEGSLNSKP Trigger: GGGCTTAGAGTTCAGGGAGCCTTCCAAGGTGTCCAATTGCCCTATCTCTGGGTCTGGGGCAGACAGAGAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
||
| CDS-3UTR GCA 90 bp | CTCGGCTTCTGTCTGGAAGGCCAGGCTGACTCCAGAATGAATGAATGGACGACGAAGAAGCGCAGTCCATaGACTTGTCGAGGTCCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: LGFCLEGQADSRMNEWTTKKRSP*TCRGPR Trigger: GCGCGGACCTCGACAAGTGCATGGACTGCGCTTCTT...CGTCGTCCATTCATTCATTCTGGAGTCAGCCTGGCCTTCCAGACAGAAGCCGAG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| CDS-3UTR CCA 90 bp | CTGCAGTTCCTTAGTATGGGTCGCTTTGTGACCCAGATTGAGGCTCTCTGTCTGCACAGTAGCCTGAAGTaGGCAGGAGGTGCTGCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: LQFLSMGRFVTQIEALCLHSSLK*AGGAAA Trigger: CGCCGCAGCACCTCCTGCCCACTTCAGGCTACTGTG...CAGACAGAGAGCCTCAATCTGGGTCACAAAGCGACCCATACTAAGGAACTGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 |
||
| 3UTR CAA 72 bp | TCTGCCCCAGACCCAGAGATAGGGCAATTGGACACCTaGGAAGGCTCCCTGAACTCTAAGCCCAGTCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SAPDPEIGQLDT*EGSLNSKPSPW Trigger: CCAAGGACTGGGCTTAGAGTTCAGGGAGCCTTCCAAGGTGTCCAATTGCCCTATCTCTGGGTCTGGGGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| CDS-3UTR CCA 90 bp | GAAAGAGTCTGGCTCGGCTTCTGTCTGGAAGGCCAGGCTGACTCCAGAATGAATGCAGAAGTCGCTGTGTaGTCGCGCTGGACAAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: ERVWLGFCLEGQADSRMNAEVAV*SRWTRS Trigger: GCTTCTTGTCCAGCGCGACCACACAGCGACTTCTGC...ATTCATTCTGGAGTCAGCCTGGCCTTCCAGACAGAAGCCGAGCCAGACTCTTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| CDS-3UTR CCA 90 bp | CAAATGCTGCAGTTCCTTAGTATGGGTCGCTTTGTGACCCAGATTGAGGCTCTCGATCAGTGCCACACCTaGGCAGCCCTCTCCACCAGT | + |
|
Preference number: 4 (lower is better) Translates to: QMLQFLSMGRFVTQIEALDQCHT*AALSTS Trigger: ACTGGTGGAGAGGGCTGCCCAGGTGTGGCACTGATC...GAGAGCCTCAATCTGGGTCACAAAGCGACCCATACTAAGGAACTGCAGCATTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 |
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| 3UTR CAA 72 bp | TGTGTCTGCCCCTCAAGTCAGCCAGACTGCCAGGACTaGTGGGGAACAAGAGATTCCCTTGTGCAAATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: CVCPSSQPDCQD*WGTRDSLVQML Trigger: CAGCATTTGCACAAGGGAATCTCTTGTTCCCCACAAGTCCTGGCAGTCTGGCTGACTTGAGGGGCAGACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| CDS-3UTR CCA 90 bp | GAAAGAGTCTGGCTCGGCTTCTGTCTGGAAGGCCAGGCTGACTCCAGAATGAATGAGACCTTTCCCACTTaGAACTTGCTGCCTGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: ERVWLGFCLEGQADSRMNETFPT*NLLPGA Trigger: AGCACCAGGCAGCAAGTTCCAAGTGGGAAAGGTCTC...ATTCATTCTGGAGTCAGCCTGGCCTTCCAGACAGAAGCCGAGCCAGACTCTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
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| CDS-3UTR CCA 90 bp | TGTGGGGAACAAGAGATTCCCTTGTGCAAATGCTGCAGTTCCTTAGTATGGGTCGCTGTGTGGTCGCGCTaGACAAGAAGCGCAGTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: CGEQEIPLCKCCSSLVWVAVWSR*TRSAVH Trigger: ATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGC...GACCCATACTAAGGAACTGCAGCATTTGCACAAGGGAATCTCTTGTTCCCCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233814.2 |
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| 3UTR CAA 72 bp | CAGACTGCCAGGACTTGTGGGGAACAAGAGATTCCCTaGTGCAAATGCTGCAGTTCCTTAGTATGGGTCGCT | + |
|
Preference number: 4 (lower is better) Translates to: QTARTCGEQEIP*CKCCSSLVWVA Trigger: AGCGACCCATACTAAGGAACTGCAGCATTTGCACAAGGGAATCTCTTGTTCCCCACAAGTCCTGGCAGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000167059.9 ENSMUST00000233814.2 |
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| CDS-3UTR CCA 90 bp | TTTATTAATAAGTCTCCCTCCCCTCCAAACATTATCCCCACAATAAATATCACCGCAGAAGTCGCTGTGTaGTCGCGCTGGACAAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: FINKSPSPPNIIPTINITAEVAV*SRWTRS Trigger: GCTTCTTGTCCAGCGCGACCACACAGCGACTTCTGC...GGTGATATTTATTGTGGGGATAATGTTTGGAGGGGAGGGAGACTTATTAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024698.10 |
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| CDS-3UTR CAA 90 bp | AGTGGGCCCCAGCGCGGGTGCTCCTCACTGGATCAGTGCCACACCTGGGCAGCCCTTGCTGCCTGGTGCTaGCTCCCCGGCCGCGGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: SGPQRGCSSLDQCHTWAALAAWC*LPGRGA Trigger: CGCGCCGCGGCCGGGGAGCAAGCACCAGGCAGCAAG...GGCTGCCCAGGTGTGGCACTGATCCAGTGAGGAGCACCCGCGCTGGGGCCCACT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
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| CDS GCA 90 bp | CACAGTAGCCTGAAGTGGGCAGGAGGTGCTGCGGCGCCTGGTGCTTaGTCCCCGGCCGCGGCGCGCATCAACACCAAGCCGAATCCCAAC | + |
|
Preference number: 5 (lower is better) Translates to: HSSLKWAGGAAAPGA*SPAAARINTKPNPN Trigger: GTTGGGATTCGGCTTGGTGTTGATGCGCGCCGCGGCCGGGGAGCAAGCACCAGGCGCCGCAGCACCTCCTGCCCACTTCAGGCTACTGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167059.9 |
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| CDS CCA 90 bp | AGGTGCTGCGGCGCATCCCAGGCAGAAGTCGCTGTGTGGTCGCGCTaGACAAGAAGCGCAGTCCATGCACTTGTCGAGGTCCGCGCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: RCCGASQAEVAVWSR*TRSAVHALVEVRAP Trigger: TGGAGCGCGGACCTCGACAAGTGCATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGCGACTTCTGCCTGGGATGCGCCGCAGCACCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 |
||
| CDS-3UTR CAA 90 bp | ACCACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGGCGCAGTCCATGCACTaGTCGAGGTCCGCGCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: TTSPHPLVVERVWLGFCLAQSMH*SRSALQ Trigger: CTGGAGCGCGGACCTCGACAAGTGCATGGACTGCGC...CAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGTGGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| CDS-3UTR CAA 90 bp | ACCTCGCCCCACCCCCTTGTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGGAAGCGCAGTCCATGCACTaGTCGAGGTCCGCGCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: TSPHPLVVERVWLGFCLEAQSMH*SRSALQ Trigger: CTGGAGCGCGGACCTCGACAAGTGCATGGACTGCGC...TTCCAGACAGAAGCCGAGCCAGACTCTTTCAACCACAAGGGGGTGGGGCGAGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| CDS-3UTR CAA 90 bp | GTGGTTGAAAGAGTCTGGCTCGGCTTCTGTCTGGAAGGCCAGGCTGACTCCAGAGCGCAGTCCATGCACTaGTCGAGGTCCGCGCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: VVERVWLGFCLEGQADSRAQSMH*SRSALQ Trigger: CTGGAGCGCGGACCTCGACAAGTGCATGGACTGCGC...TCTGGAGTCAGCCTGGCCTTCCAGACAGAAGCCGAGCCAGACTCTTTCAACCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 ENSMUST00000233814.2 |
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| CDS CCA 90 bp | TCCAGACCAGGAAAATCCCAGGCAGAAGTCGCTGTGTGGTCGCGCTaGACAAGAAGCGCAGTCCATGCACTTGTCGAGGTCCGCGCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SRPGKSQAEVAVWSR*TRSAVHALVEVRAP Trigger: TGGAGCGCGGACCTCGACAAGTGCATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGCGACTTCTGCCTGGGATTTTCCTGGTCTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233814.2 |
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| CDS CCA 90 bp | CATGCACTTGTCGAGGTCCGCGCTCCAGGAGCTGCCGCTAGAGCATaGGGAGGTGCCTCAATTGGACAGGTAGCGAAACTGAAGCTCGGA | + |
|
Preference number: 5 (lower is better) Translates to: HALVEVRAPGAAARA*GGASIGQVAKLKLG Trigger: TCCGAGCTTCAGTTTCGCTACCTGTCCAATTGAGGCACCTCCCCATGCTCTAGCGGCAGCTCCTGGAGCGCGGACCTCGACAAGTGCATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
||
| CDS CCA 90 bp | AAACTGAAGCTCGGACTGCGGATAAAACTTGAGACCTTTCCCACTTaGAACTTGCTGCCTGGTGCTTGCTCCCCGGCCGCGGCGCGCATC | + |
|
Preference number: 5 (lower is better) Translates to: KLKLGLRIKLETFPT*NLLPGACSPAAARI Trigger: GATGCGCGCCGCGGCCGGGGAGCAAGCACCAGGCAGCAAGTTCCAAGTGGGAAAGGTCTCAAGTTTTATCCGCAGTCCGAGCTTCAGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
||
| CDS CCA 90 bp | GGCATCTTCTCCAGACCAGGAAAATCCCAGGCAGAAGTCGCTGTGTaGTCGCGCTGGACAAGAAGCGCAGTCCATGCACTTGTCGAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: GIFSRPGKSQAEVAV*SRWTRSAVHALVEV Trigger: GACCTCGACAAGTGCATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGCGACTTCTGCCTGGGATTTTCCTGGTCTGGAGAAGATGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233814.2 |
||
| CDS GCA 72 bp | CTGAAGTGGGCAGGAGGTGCTGCGGCGCCTGGTGCTTaGTCCCCGGCCGCGGCGCGCATCAACACCAAGCCG | + |
|
Preference number: 6 (lower is better) Translates to: LKWAGGAAAPGA*SPAAARINTKP Trigger: CGGCTTGGTGTTGATGCGCGCCGCGGCCGGGGAGCAAGCACCAGGCGCCGCAGCACCTCCTGCCCACTTCAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167059.9 |
||
| CDS CAA 72 bp | TGTGGTCGCGCTGGACAAGAAGCGCAGTCCATGCACTaGTCGAGGTCCGCGCTCCAGGAGCTGCCGCTAGAG | + |
|
Preference number: 6 (lower is better) Translates to: CGRAGQEAQSMH*SRSALQELPLE Trigger: CTCTAGCGGCAGCTCCTGGAGCGCGGACCTCGACAAGTGCATGGACTGCGCTTCTTGTCCAGCGCGACCACA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 ENSMUST00000233814.2 |
||
| CDS CCA 72 bp | GGCGCATCCCAGGCAGAAGTCGCTGTGTGGTCGCGCTaGACAAGAAGCGCAGTCCATGCACTTGTCGAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: GASQAEVAVWSR*TRSAVHALVEV Trigger: GACCTCGACAAGTGCATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGCGACTTCTGCCTGGGATGCGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024698.10 ENSMUST00000233428.2 |
||
| CDS CCA 72 bp | GTCGAGGTCCGCGCTCCAGGAGCTGCCGCTAGAGCATaGGGAGGTGCCTCAATTGGACAGGTAGCGAAACTG | + |
|
Preference number: 6 (lower is better) Translates to: VEVRAPGAAARA*GGASIGQVAKL Trigger: CAGTTTCGCTACCTGTCCAATTGAGGCACCTCCCCATGCTCTAGCGGCAGCTCCTGGAGCGCGGACCTCGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
||
| CDS CAA 72 bp | CTGCGGATAAAACTTGAGACCTTTCCCACTTGGAACTaGCTGCCTGGTGCTTGCTCCCCGGCCGCGGCGCGC | + |
|
Preference number: 6 (lower is better) Translates to: LRIKLETFPTWN*LPGACSPAAAR Trigger: GCGCGCCGCGGCCGGGGAGCAAGCACCAGGCAGCAAGTTCCAAGTGGGAAAGGTCTCAAGTTTTATCCGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
||
| CDS CAA 90 bp | AAGCTCGGACTGCGGATAAAACTTGAGACCTTTCCCACTTGGAACTaGCTGCCTGGTGCTTGCTCCCCGGCCGCGGCGCGCATCAACACC | + |
|
Preference number: 6 (lower is better) Translates to: KLGLRIKLETFPTWN*LPGACSPAAARINT Trigger: GGTGTTGATGCGCGCCGCGGCCGGGGAGCAAGCACCAGGCAGCAAGTTCCAAGTGGGAAAGGTCTCAAGTTTTATCCGCAGTCCGAGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
||
| CDS CCA 72 bp | CTCGGACTGCGGATAAAACTTGAGACCTTTCCCACTTaGAACTTGCTGCCTGGTGCTTGCTCCCCGGCCGCG | + |
|
Preference number: 6 (lower is better) Translates to: LGLRIKLETFPT*NLLPGACSPAA Trigger: CGCGGCCGGGGAGCAAGCACCAGGCAGCAAGTTCCAAGTGGGAAAGGTCTCAAGTTTTATCCGCAGTCCGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233428.2 |
||
| CDS CCA 72 bp | GGAAAATCCCAGGCAGAAGTCGCTGTGTGGTCGCGCTaGACAAGAAGCGCAGTCCATGCACTTGTCGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: GKSQAEVAVWSR*TRSAVHALVEV Trigger: GACCTCGACAAGTGCATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGCGACTTCTGCCTGGGATTTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233814.2 |
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| CDS CCA 72 bp | TCCAGACCAGGAAAATCCCAGGCAGAAGTCGCTGTGTaGTCGCGCTGGACAAGAAGCGCAGTCCATGCACTT | + |
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Preference number: 6 (lower is better) Translates to: SRPGKSQAEVAV*SRWTRSAVHAL Trigger: AAGTGCATGGACTGCGCTTCTTGTCCAGCGCGACCACACAGCGACTTCTGCCTGGGATTTTCCTGGTCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233814.2 |
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