Pregenerated sensors for TNFAIP8L2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000013707Ensembl transcript IDs: ENSMUST00000013851.4
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGGATCCCCTGGTTCTGGGCAGCCCTCCCGGGAGAAGCGGACCTaGGTTTCACTTCTTCTTCAGTCAGCTGTTTCCTTTACTGGAACT | + |
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Preference number: 1 (lower is better) Translates to: GGSPGSGQPSREKRT*VSLLLQSAVSFTGT Trigger: AGTTCCAGTAAAGGAAACAGCTGACTGAAGAAGAAGTGAAACTCAGGTCCGCTTCTCCCGGGAGGGCTGCCCAGAACCAGGGGATCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR CCA 90 bp | GCGGACCTGAGTTTCACTTCTTCTTCAGTCAGCTGTTTCCTTTACTaGAACTGGATGGGAGCGAGAGCCGCCTCACTCAGTTCAGCCTTG | + |
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Preference number: 1 (lower is better) Translates to: ADLSFTSSSVSCFLY*NWMGARAASLSSAL Trigger: CAAGGCTGAACTGAGTGAGGCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAAACAGCTGACTGAAGAAGAAGTGAAACTCAGGTCCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR CCA 90 bp | CTGAGTTTCACTTCTTCTTCAGTCAGCTGTTTCCTTTACTGGAACTaGATGGGAGCGAGAGCCGCCTCACTCAGTTCAGCCTTGCTTTGC | + |
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Preference number: 1 (lower is better) Translates to: LSFTSSSVSCFLYWN*MGARAASLSSALLC Trigger: GCAAAGCAAGGCTGAACTGAGTGAGGCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAAACAGCTGACTGAAGAAGAAGTGAAACTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR-3UTR CCA 90 bp | TGTCCCCTTCCTCGGGTTTGTGGAGGAGGAGGATCCCCTGGTTCTGGGCAGCCCTTCCTTTACTGGAACTaGATGGGAGCGAGAGCCGCC | + |
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Preference number: 2 (lower is better) Translates to: CPLPRVCGGGGSPGSGQPFLYWN*MGARAA Trigger: GGCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAA...GGGCTGCCCAGAACCAGGGGATCCTCCTCCTCCACAAACCCGAGGAAGGGGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR-3UTR CCA 90 bp | AGGTCTCTAATGACCACCTTCCTGCGTGTGGCCTTTAGTGTCCCCTTCCTCGGGAGGAGGAGGATCCCCTaGTTCTGGGCAGCCCTCCCG | + |
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Preference number: 2 (lower is better) Translates to: RSLMTTFLRVAFSVPFLGRRRIP*FWAALP Trigger: CGGGAGGGCTGCCCAGAACCAGGGGATCCTCCTCCT...CCCGAGGAAGGGGACACTAAAGGCCACACGCAGGAAGGTGGTCATTAGAGACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR-3UTR CCA 90 bp | GAACACAGCGTCTGTATGTGTCCTAGTGCTGCCTCCAACTCTAGATCCAGGAGGCCACCTTCCTGCGTGTaGCCTTTAGTGTCCCCTTCC | + |
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Preference number: 2 (lower is better) Translates to: EHSVCMCPSAASNSRSRRPPSCV*PLVSPS Trigger: GGAAGGGGACACTAAAGGCCACACGCAGGAAGGTGG...CCTCCTGGATCTAGAGTTGGAGGCAGCACTAGGACACATACAGACGCTGTGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR-3UTR CCA 90 bp | TTCTTCTTCAGTCAGCTGTTTCCTTTACTGGAACTGGATGGGAGCGAGAGCCGCGCAGTAGTTTGGGGGTaGGGGTGGCCTCAGTGTCTA | + |
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Preference number: 2 (lower is better) Translates to: FFFSQLFPLLELDGSESRAVVWG*GWPQCL Trigger: TAGACACTGAGGCCACCCCCACCCCCAAACTACTGC...GCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAAACAGCTGACTGAAGAAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR CCA 72 bp | TCCCCTTCCTCGGGTTTGTGGAGGAGGAGGATCCCCTaGTTCTGGGCAGCCCTCCCGGGAGAAGCGGACCTG | + |
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Preference number: 3 (lower is better) Translates to: SPSSGLWRRRIP*FWAALPGEADL Trigger: CAGGTCCGCTTCTCCCGGGAGGGCTGCCCAGAACCAGGGGATCCTCCTCCTCCACAAACCCGAGGAAGGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR CCA 72 bp | TGCGTGTGGCCTTTAGTGTCCCCTTCCTCGGGTTTGTaGAGGAGGAGGATCCCCTGGTTCTGGGCAGCCCTC | + |
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Preference number: 3 (lower is better) Translates to: CVWPLVSPSSGL*RRRIPWFWAAL Trigger: GAGGGCTGCCCAGAACCAGGGGATCCTCCTCCTCCACAAACCCGAGGAAGGGGACACTAAAGGCCACACGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR-3UTR CAA 90 bp | CCCTTCCCCCAGCTCCTTCTAGAAGCTCTGGAACACAGCGTCTGTATGTGTCCTTCCCCTTCCTCGGGTTaGTGGAGGAGGAGGATCCCC | + |
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Preference number: 3 (lower is better) Translates to: PFPQLLLEALEHSVCMCPSPSSG*WRRRIP Trigger: GGGGATCCTCCTCCTCCACAAACCCGAGGAAGGGGA...AGGACACATACAGACGCTGTGTTCCAGAGCTTCTAGAAGGAGCTGGGGGAAGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR TCA 72 bp | CCTGGTTCTGGGCAGCCCTCCCGGGAGAAGCGGACCTaGGTTTCACTTCTTCTTCAGTCAGCTGTTTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: PGSGQPSREKRT*VSLLLQSAVSF Trigger: AAAGGAAACAGCTGACTGAAGAAGAAGTGAAACTCAGGTCCGCTTCTCCCGGGAGGGCTGCCCAGAACCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR CCA 72 bp | CTTCTTCAGTCAGCTGTTTCCTTTACTGGAACTGGATaGGAGCGAGAGCCGCCTCACTCAGTTCAGCCTTGC | + |
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Preference number: 3 (lower is better) Translates to: LLQSAVSFTGTG*EREPPHSVQPC Trigger: GCAAGGCTGAACTGAGTGAGGCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAAACAGCTGACTGAAGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR CCA 72 bp | ACTTCTTCTTCAGTCAGCTGTTTCCTTTACTGGAACTaGATGGGAGCGAGAGCCGCCTCACTCAGTTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: TSSSVSCFLYWN*MGARAASLSSA Trigger: GGCTGAACTGAGTGAGGCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAAACAGCTGACTGAAGAAGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR-3UTR CAA 90 bp | TCTTCTTCAGTCAGCTGTTTCCTTTACTGGAACTGGATGGGAGCGAGAGCCGCCTCCCAGTCAGTCATTTaGCCAAAGTCCAGTGTGCTG | + |
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Preference number: 3 (lower is better) Translates to: SSSVSCFLYWNWMGARAASQSVI*PKSSVL Trigger: CAGCACACTGGACTTTGGCAAAATGACTGACTGGGA...GGCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAAACAGCTGACTGAAGAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| 3UTR CCA 72 bp | AGTTTCACTTCTTCTTCAGTCAGCTGTTTCCTTTACTaGAACTGGATGGGAGCGAGAGCCGCCTCACTCAGT | + |
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Preference number: 3 (lower is better) Translates to: SFTSSSVSCFLY*NWMGARAASLS Trigger: ACTGAGTGAGGCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAAACAGCTGACTGAAGAAGAAGTGAAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR TCA 90 bp | GGGTTTGTGGAGGAGGAGGATCCCCTGGTTCTGGGCAGCCCTCCCGGGAGAAGCCGGCAGCCTCAAAGGTaGAGTCCACCTCACCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: GFVEEEDPLVLGSPPGRSRQPQR*SPPHRS Trigger: GCTTCGGTGAGGTGGACTTCACCTTTGAGGCTGCCG...GCTTCTCCCGGGAGGGCTGCCCAGAACCAGGGGATCCTCCTCCTCCACAAACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR TCA 90 bp | TTCCTCGGGTTTGTGGAGGAGGAGGATCCCCTGGTTCTGGGCAGCCCTCCCGGGTGCCAAGGTGCTGAGTaGAGTCAGGCCCATAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: FLGFVEEEDPLVLGSPPGCQGAE*SQAHRG Trigger: CCCTCTATGGGCCTGACTTCACTCAGCACCTTGGCA...CCCGGGAGGGCTGCCCAGAACCAGGGGATCCTCCTCCTCCACAAACCCGAGGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR CCA 90 bp | TGTCCCCTTCCTCGGGTTTGTGGAGGAGGAGGATCCCCTGGTTCTGGGCAGCCCTCACCCGCTGTGCCTTaGGCCGGCTGTGCGTGTATT | + |
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Preference number: 4 (lower is better) Translates to: CPLPRVCGGGGSPGSGQPSPAVP*AGCACI Trigger: AATACACGCACAGCCGGCCCAAGGCACAGCGGGTGA...GGGCTGCCCAGAACCAGGGGATCCTCCTCCTCCACAAACCCGAGGAAGGGGACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR TCA 90 bp | CCCTGGTTCTGGGCAGCCCTCCCGGGAGAAGCGGACCTGAGTTTCACTTCTTCTCCTGATGCGGTCATGTaGCTTGGGTGTGAGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: PWFWAALPGEADLSFTSSPDAVM*LGCEVV Trigger: CACCACCTCACACCCAAGTCACATGACCGCATCAGG...AGAAGAAGTGAAACTCAGGTCCGCTTCTCCCGGGAGGGCTGCCCAGAACCAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR GCA 90 bp | GTGGGGGTGGCCTCAGTGTCTATAGCACTCTTGGGAGAGAGTGAAGCCAGGGGAGGCCAAAGCAGCCACTaGGGTGCAGCACAGCCACTT | + |
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Preference number: 4 (lower is better) Translates to: VGVASVSIALLGESEARGGQSSH*GAAQPL Trigger: AAGTGGCTGTGCTGCACCGCAGTGGCTGCTTTGGCC...TCCCCTGGCTTCACTCTCTCCCAAGAGTGCTATAGACACTGAGGCCACCCCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR CCA 90 bp | GGAGAGAGTGAAGCCAGGGGATCGAGAAGCATTGGTGCAGGGTTAGAGAGCCCGGACTTGGGTGTGAGGTaGTGCTCCACCAGCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: GESEARGSRSIGAGLESPDLGVR*CSTSSS Trigger: GCTGGAGCTGGTGGAGCACCACCTCACACCCAAGTC...CGGGCTCTCTAACCCTGCACCAATGCTTCTCGATCCCCTGGCTTCACTCTCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR TCA 90 bp | GTGGGGGTGGCCTCAGTGTCTATAGCACTCTTGGGAGAGAGTGAAGCCAGGGGAGATCAAACACGTGCCTaGTGCGGTCATGTGACTTGG | + |
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Preference number: 4 (lower is better) Translates to: VGVASVSIALLGESEARGDQTRA*CGHVTW Trigger: CCAAGTCACATGACCGCATCAGGCACGTGTTTGATC...TCCCCTGGCTTCACTCTCTCCCAAGAGTGCTATAGACACTGAGGCCACCCCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR GCA 90 bp | GAACACAGCGTCTGTATGTGTCCTAGTGCTGCCTCCAACTCTAGATCCAGGAGGTTTGATCACCCGCTGTaGCTTGGGCCGGCTGTGCGT | + |
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Preference number: 4 (lower is better) Translates to: EHSVCMCPSAASNSRSRRFDHPL*LGPAVR Trigger: ACGCACAGCCGGCCCAAGGCACAGCGGGTGATCAAA...CCTCCTGGATCTAGAGTTGGAGGCAGCACTAGGACACATACAGACGCTGTGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR GCA 90 bp | TCTTCTTCAGTCAGCTGTTTCCTTTACTGGAACTGGATGGGAGCGAGAGCCGCCGCCTTGGGCCGGCTGTaGGTGTATTCTTTGGACACG | + |
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Preference number: 4 (lower is better) Translates to: SSSVSCFLYWNWMGARAAALGRL*VYSLDT Trigger: CGTGTCCAAAGAATACACGCACAGCCGGCCCAAGGC...GGCGGCTCTCGCTCCCATCCAGTTCCAGTAAAGGAAACAGCTGACTGAAGAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR CAA 90 bp | TTCCTCGGGTTTGTGGAGGAGGAGGATCCCCTGGTTCTGGGCAGCCCTCCCGGGATCACCCGCTGTGCCTaGGGCCGGCTGTGCGTGTAT | + |
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Preference number: 5 (lower is better) Translates to: FLGFVEEEDPLVLGSPPGITRCA*GRLCVY Trigger: ATACACGCACAGCCGGCCCAAGGCACAGCGGGTGAT...CCCGGGAGGGCTGCCCAGAACCAGGGGATCCTCCTCCTCCACAAACCCGAGGAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS TCA 90 bp | ACCTCACCGAAGCTAAGTGCGGTCATGGCGCCCTGCCGTAGCTTCTaGCGAAATCGTGTAGCCAGAGCCAGCTCCCCAGGGCCAAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: TSPKLSAVMAPCRSF*RNRVARASSPGPKQ Trigger: CTGCTTTGGCCCTGGGGAGCTGGCTCTGGCTACACGATTTCGTCAGAAGCTACGGCAGGGCGCCATGACCGCACTTAGCTTCGGTGAGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS GCA 90 bp | TCAAACACGTGCCTGATGCGGTCATGTGACTTGGGTGTGAGGTGGTaGTCCACCAGCTCCAGCAGAATGTCCCGGCACTCGACGAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: SNTCLMRSCDLGVRW*STSSSRMSRHSTSR Trigger: TCTGCTCGTCGAGTGCCGGGACATTCTGCTGGAGCTGGTGGAGCACCACCTCACACCCAAGTCACATGACCGCATCAGGCACGTGTTTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS TCA 90 bp | GTCGGGGTCAGAGTAGTGATCAAACACGTGCCTGATGCGGTCATGTaGCTTGGGTGTGAGGTGGTGCTCCACCAGCTCCAGCAGAATGTC | + |
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Preference number: 5 (lower is better) Translates to: VGVRVVIKHVPDAVM*LGCEVVLHQLQQNV Trigger: GACATTCTGCTGGAGCTGGTGGAGCACCACCTCACACCCAAGTCACATGACCGCATCAGGCACGTGTTTGATCACTACTCTGACCCCGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS GCA 90 bp | AGCCACTTTAACCGCTACCTTGATGAGGTCTTTGATCACCCGCTGTaGCTTGGGCCGGCTGTGCGTGTATTCTTTGGACACGCGGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: SHFNRYLDEVFDHPL*LGPAVRVFFGHAVK Trigger: CTTTACCGCGTGTCCAAAGAATACACGCACAGCCGGCCCAAGGCACAGCGGGTGATCAAAGACCTCATCAAGGTAGCGGTTAAAGTGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR CAA 90 bp | GAGAGCCCGATGTGTCATTTCCCAGTCAGTCATTTTGCCAAAGTCCAGTGTGCTATGCGGTCATGTGACTaGGGTGTGAGGTGGTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: ESPMCHFPVSHFAKVQCAMRSCD*GVRWCS Trigger: GGAGCACCACCTCACACCCAAGTCACATGACCGCAT...AGCACACTGGACTTTGGCAAAATGACTGACTGGGAAATGACACATCGGGCTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS-3UTR CAA 90 bp | TGTCATTTCCCAGTCAGTCATTTTGCCAAAGTCCAGTGTGCTGAGCTCCGGAGCACCTTGATGAGGTCTTaGATCACCCGCTGTGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: CHFPVSHFAKVQCAELRSTLMRS*ITRCAL Trigger: CAAGGCACAGCGGGTGATCAAAGACCTCATCAAGGT...GCTCCGGAGCTCAGCACACTGGACTTTGGCAAAATGACTGACTGGGAAATGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS CCA 72 bp | CCCGCTGTGCCTTGGGCCGGCTGTGCGTGTATTCTTTaGACACGCGGTAAAGCTCGTCTAGCACCTCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: PAVPWAGCACIL*TRGKARLAPRC Trigger: GCAGCGAGGTGCTAGACGAGCTTTACCGCGTGTCCAAAGAATACACGCACAGCCGGCCCAAGGCACAGCGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS TCA 72 bp | AAGCTAAGTGCGGTCATGGCGCCCTGCCGTAGCTTCTaGCGAAATCGTGTAGCCAGAGCCAGCTCCCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: KLSAVMAPCRSF*RNRVARASSPG Trigger: CCCTGGGGAGCTGGCTCTGGCTACACGATTTCGTCAGAAGCTACGGCAGGGCGCCATGACCGCACTTAGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS GCA 72 bp | TGCCTGATGCGGTCATGTGACTTGGGTGTGAGGTGGTaGTCCACCAGCTCCAGCAGAATGTCCCGGCACTCG | + |
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Preference number: 6 (lower is better) Translates to: CLMRSCDLGVRW*STSSSRMSRHS Trigger: CGAGTGCCGGGACATTCTGCTGGAGCTGGTGGAGCACCACCTCACACCCAAGTCACATGACCGCATCAGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS CAA 90 bp | CCAAAGCAGCCACTGCGGTGCAGCACAGCCACTTTAACCGCTACCTaGATGAGGTCTTTGATCACCCGCTGTGCCTTGGGCCGGCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: PKQPLRCSTATLTAT*MRSLITRCALGRLC Trigger: GCACAGCCGGCCCAAGGCACAGCGGGTGATCAAAGACCTCATCAAGGTAGCGGTTAAAGTGGCTGTGCTGCACCGCAGTGGCTGCTTTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS CAA 72 bp | GCTACCTTGATGAGGTCTTTGATCACCCGCTGTGCCTaGGGCCGGCTGTGCGTGTATTCTTTGGACACGCGG | + |
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Preference number: 6 (lower is better) Translates to: ATLMRSLITRCA*GRLCVYSLDTR Trigger: CCGCGTGTCCAAAGAATACACGCACAGCCGGCCCAAGGCACAGCGGGTGATCAAAGACCTCATCAAGGTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS CAA 72 bp | AGCACAGCCACTTTAACCGCTACCTTGATGAGGTCTTaGATCACCCGCTGTGCCTTGGGCCGGCTGTGCGTG | + |
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Preference number: 6 (lower is better) Translates to: STATLTATLMRS*ITRCALGRLCV Trigger: CACGCACAGCCGGCCCAAGGCACAGCGGGTGATCAAAGACCTCATCAAGGTAGCGGTTAAAGTGGCTGTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS CAA 90 bp | CTGCGGTGCAGCACAGCCACTTTAACCGCTACCTTGATGAGGTCTTaGATCACCCGCTGTGCCTTGGGCCGGCTGTGCGTGTATTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LRCSTATLTATLMRS*ITRCALGRLCVYSL Trigger: CAAAGAATACACGCACAGCCGGCCCAAGGCACAGCGGGTGATCAAAGACCTCATCAAGGTAGCGGTTAAAGTGGCTGTGCTGCACCGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS GCA 72 bp | TCTAGCACCTCGCTGCTGGTCTCGTCGATAAAGAGATaGGCCACGGACCGACCAGCCATTTTACTCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SSTSLLVSSIKR*ATDRPAILLSS Trigger: GCTGCTGAGTAAAATGGCTGGTCGGTCCGTGGCGCATCTCTTTATCGACGAGACCAGCAGCGAGGTGCTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS TCA 72 bp | AGAGTAGTGATCAAACACGTGCCTGATGCGGTCATGTaGCTTGGGTGTGAGGTGGTGCTCCACCAGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: RVVIKHVPDAVM*LGCEVVLHQLQ Trigger: CTGGAGCTGGTGGAGCACCACCTCACACCCAAGTCACATGACCGCATCAGGCACGTGTTTGATCACTACTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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| CDS GCA 72 bp | AACCGCTACCTTGATGAGGTCTTTGATCACCCGCTGTaGCTTGGGCCGGCTGTGCGTGTATTCTTTGGACAC | + |
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Preference number: 6 (lower is better) Translates to: NRYLDEVFDHPL*LGPAVRVFFGH Trigger: GTGTCCAAAGAATACACGCACAGCCGGCCCAAGGCACAGCGGGTGATCAAAGACCTCATCAAGGTAGCGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000013851.4 |
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