Pregenerated sensors for TNFAIP6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053475Ensembl transcript IDs: ENSMUST00000065927.6
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACAAAAGAGAACAAACGAGGTCCAAGAGCTACAAATATAAATATTaGAGCCGGGCGGTGGTGGTGGACGCCTTTAATCCCAGCACTTGG | + |
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Preference number: 1 (lower is better) Translates to: YKREQTRSKSYKYKY*SRAVVVDAFNPSTW Trigger: CCAAGTGCTGGGATTAAAGGCGTCCACCACCACCGCCCGGCTTCAATATTTATATTTGTAGCTCTTGGACCTCGTTTGTTCTCTTTTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| 3UTR-3UTR CCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACAGCCGGGCGGTGGTGGTaGACGCCTTTAATCCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: IRLQKAECQNSNANHRVTAGRWW*TPLIPA Trigger: TGCTGGGATTAAAGGCGTCCACCACCACCGCCCGGC...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| 3UTR-3UTR TCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATGCCTGGTCTTCAAAGTaGGTTCCAGGACAGCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYAWSSK*VPGQPR Trigger: CCTTGGCTGTCCTGGAACTCACTTTGAAGACCAGGC...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| 3UTR-3UTR TCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACATACAAATATAAATATTaGAGCCGGGCGGTGGTGGTG | + |
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Preference number: 2 (lower is better) Translates to: IRLQKAECQNSNANHRVTYKYKY*SRAVVV Trigger: CACCACCACCGCCCGGCTTCAATATTTATATTTGTA...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| 3UTR CCA 72 bp | GCTACAAATATAAATATTGAAGCCGGGCGGTGGTGGTaGACGCCTTTAATCCCAGCACTTGGTAGGCGGAGG | + |
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Preference number: 3 (lower is better) Translates to: ATNINIEAGRWW*TPLIPALGRRR Trigger: CCTCCGCCTACCAAGTGCTGGGATTAAAGGCGTCCACCACCACCGCCCGGCTTCAATATTTATATTTGTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| 3UTR CCA 72 bp | CCAAGAGCTACAAATATAAATATTGAAGCCGGGCGGTaGTGGTGGACGCCTTTAATCCCAGCACTTGGTAGG | + |
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Preference number: 3 (lower is better) Translates to: PRATNINIEAGR*WWTPLIPALGR Trigger: CCTACCAAGTGCTGGGATTAAAGGCGTCCACCACCACCGCCCGGCTTCAATATTTATATTTGTAGCTCTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR TCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATTGGCTTCGGCGTAGGTaGGCTTGTATCTGCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYWLRRR*ACICQP Trigger: GGGCTGGCAGATACAAGCTCACCTACGCCGAAGCCA...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR TCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATTTGAATCCCCATCCGTaGGCCTCTTCCCACAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYLNPHP*ASSHSK Trigger: CTTGCTGTGGGAAGAGGCTCACGGATGGGGATTCAA...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR TCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATTTCGCTGACCGTACTTaGGCCGAATGTGCCAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYFADRT*AECASS Trigger: GCTACTGGCACATTCGGCTCAAGTACGGTCAGCGAA...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATATCCGACTCTACCCTTaGCCATCCATCCAGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYIRLYP*PSIQQH Trigger: GTGCTGCTGGATGGATGGCCAAGGGTAGAGTCGGAT...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR TCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATTTCGCTTCGGATCTGTaGAGACACCACCACACTCCT | + |
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Preference number: 4 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYFASDL*RHHHTP Trigger: AGGAGTGTGGTGGTGTCTTCACAGATCCGAAGCGAA...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATTCCCAAATCCACAGTTaGGCCCAGGTTTCACAATGG | + |
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Preference number: 4 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYSQIHS*AQVSQW Trigger: CCATTGTGAAACCTGGGCCCAACTGTGGATTTGGGA...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR TCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACAATCGCTCACTCCTGTTaGGCCGGATTCCATAATCGA | + |
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Preference number: 4 (lower is better) Translates to: IRLQKAECQNSNANHRVTIAHSC*AGFHNR Trigger: TCGATTATGGAATCCGGCTCAACAGGAGTGAGCGAT...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATACACTCCTTTGCATGTaGGTTGTAGCAATAGGCATC | + |
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Preference number: 4 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYTLLCM*VVAIGI Trigger: GATGCCTATTGCTACAACCCACATGCAAAGGAGTGT...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR GCA 90 bp | TACAAAGTCCCATTTTGTAGAAAACTCAGAGATCTTGGGAAGTGCTTGAGCTATTTGACTGGATTTAGATaGAGGATCCACTGTGACGTA | + |
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Preference number: 4 (lower is better) Translates to: YKVPFCRKLRDLGKCLSYLTGFR*RIHCDV Trigger: TACGTCACAGTGGATCCTGCATCTAAATCCAGTCAA...ATAGCTCAAGCACTTCCCAAGATCTCTGAGTTTTCTACAAAATGGGACTTTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACAGTCAGCCAAGCAGCCTaGATCATGTTCAAGGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: IRLQKAECQNSNANHRVTVSQAA*IMFKVK Trigger: TTTGACCTTGAACATGATCCAGGCTGCTTGGCTGAC...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR GCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACAACCACCACACTCCTTTaGATGTGGGTTGTAGCAATA | + |
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Preference number: 4 (lower is better) Translates to: IRLQKAECQNSNANHRVTTTTLL*MWVVAI Trigger: TATTGCTACAACCCACATGCAAAGGAGTGTGGTGGT...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACACCAGCAGCACAGACATaGAATCCAATTTTTCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: IRLQKAECQNSNANHRVTPAAQT*NPIFLA Trigger: AGCCAGAAAAATTGGATTCCATGTCTGTGCTGCTGG...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACAGTCATCGTACTCATTTaGGAAGCCCGGGGATTTAAA | + |
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Preference number: 4 (lower is better) Translates to: IRLQKAECQNSNANHRVTVIVLI*EARGFK Trigger: TTTAAATCCCCGGGCTTCCCAAATGAGTACGATGAC...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR TCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACAGGATTCCATAATCGATaGTACCCGTTTTCCCAAATC | + |
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Preference number: 4 (lower is better) Translates to: IRLQKAECQNSNANHRVTGFHNR*YPFSQI Trigger: GATTTGGGAAAACGGGTATCATCGATTATGGAATCC...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR TCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACAAGCCATATGGAGTTATaGAAGATCCCGTTCTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: IRLQKAECQNSNANHRVTSHMEL*KIPFLN Trigger: ATTCAAGAACGGGATCTTTCATAACTCCATATGGCT...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CCA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACACTTGTTCAAGCCATATaGAGTTATGAAAGATCCCGT | + |
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Preference number: 4 (lower is better) Translates to: IRLQKAECQNSNANHRVTLVQAI*SYERSR Trigger: ACGGGATCTTTCATAACTCCATATGGCTTGAACAAG...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS TCA 90 bp | GACGACCACCTTCAAATTCACATACGGCCTTGGCTTCGGCGTAGGTaGGCTTGTATCTGCCAGCCCGAGCTTCTCTGTGGTATACGCCCG | + |
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Preference number: 5 (lower is better) Translates to: DDHLQIHIRPWLRRR*ACICQPELLCGIRP Trigger: CGGGCGTATACCACAGAGAAGCTCGGGCTGGCAGATACAAGCTCACCTACGCCGAAGCCAAGGCCGTATGTGAATTTGAAGGTGGTCGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS CCA 90 bp | CACAGTTGGGCCCAGGTTTCACAATGGGGTATCCGACTCTACCCTTaGCCATCCATCCAGCAGCACAGACATGGAATCCAATTTTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: HSWAQVSQWGIRLYP*PSIQQHRHGIQFFW Trigger: CCAGAAAAATTGGATTCCATGTCTGTGCTGCTGGATGGATGGCCAAGGGTAGAGTCGGATACCCCATTGTGAAACCTGGGCCCAACTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS TCA 90 bp | CCGCTGCTTGTTCAAGCCATATGGAGTTATGAAAGATCCCGTTCTTaGATCCCCATCCGTGAGCCTCTTCCCACAGCAAGACGCATAAGC | + |
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Preference number: 5 (lower is better) Translates to: PLLVQAIWSYERSRS*IPIREPLPTARRIS Trigger: GCTTATGCGTCTTGCTGTGGGAAGAGGCTCACGGATGGGGATTCAAGAACGGGATCTTTCATAACTCCATATGGCTTGAACAAGCAGCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS CCA 90 bp | GAGCCGAATGTGCCAGTAGCAGACCTGGTTGTCATCGTACTCATTTaGGAAGCCCGGGGATTTAAAAATTCGCTTCGGATCTGTGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: EPNVPVADLVVIVLI*EARGFKNSLRICED Trigger: GTCTTCACAGATCCGAAGCGAATTTTTAAATCCCCGGGCTTCCCAAATGAGTACGATGACAACCAGGTCTGCTACTGGCACATTCGGCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS GCA 90 bp | ATCCACTGTGACGTATTTAATCTGGAAGCCTCCAGCCGTGACGGATaGATCACTCAGAAACTTCAAGGTCATGACATTTCCTGTGCTAAT | + |
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Preference number: 5 (lower is better) Translates to: IHCDVFNLEASSRDG*ITQKLQGHDISCAN Trigger: ATTAGCACAGGAAATGTCATGACCTTGAAGTTTCTGAGTGATGCATCCGTCACGGCTGGAGGCTTCCAGATTAAATACGTCACAGTGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CAA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACATATCCGACTCTACCCTaGGCCATCCATCCAGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: IRLQKAECQNSNANHRVTYPTLP*AIHPAA Trigger: TGCTGCTGGATGGATGGCCAAGGGTAGAGTCGGATA...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS GCA 90 bp | CTTATTTCCAGTAGTACTTGTATTTTTGGCTTGACTGGATTTAGATaGAGGATCCACTGTGACGTATTTAATCTGGAAGCCTCCAGCCGT | + |
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Preference number: 5 (lower is better) Translates to: LISSSTCIFGLTGFR*RIHCDVFNLEASSR Trigger: ACGGCTGGAGGCTTCCAGATTAAATACGTCACAGTGGATCCTGCATCTAAATCCAGTCAAGCCAAAAATACAAGTACTACTGGAAATAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CAA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACACTAGCTGCTTGTAGGTaGCGAGACGACCACCTTCAA | + |
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Preference number: 5 (lower is better) Translates to: IRLQKAECQNSNANHRVTLAACR*RDDHLQ Trigger: TTGAAGGTGGTCGTCTCGCAACCTACAAGCAGCTAG...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS TCA 90 bp | CCAGGTAAGAACTTCTTATTTCCAGTAGTACTTGTATTTTTGGCTTaGCTGGATTTAGATGCAGGATCCACTGTGACGTATTTAATCTGG | + |
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Preference number: 5 (lower is better) Translates to: PGKNFLFPVVLVFLA*LDLDAGSTVTYLIW Trigger: CCAGATTAAATACGTCACAGTGGATCCTGCATCTAAATCCAGTCAAGCCAAAAATACAAGTACTACTGGAAATAAGAAGTTCTTACCTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS-3UTR CAA 90 bp | ATCAGGTTACAAAAGGCAGAATGCCAAAATTCAAACGCAAATCATAGAGTTACAACTTGTATTTTTGGCTaGACTGGATTTAGATGCAGG | + |
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Preference number: 5 (lower is better) Translates to: IRLQKAECQNSNANHRVTTCIFG*TGFRCR Trigger: CCTGCATCTAAATCCAGTCAAGCCAAAAATACAAGT...TGTAACTCTATGATTTGCGTTTGAATTTTGGCATTCTGCCTTTTGTAACCTGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS CAA 72 bp | GGCCCAGGTTTCACAATGGGGTATCCGACTCTACCCTaGGCCATCCATCCAGCAGCACAGACATGGAATCCA | + |
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Preference number: 6 (lower is better) Translates to: GPGFTMGYPTLP*AIHPAAQTWNP Trigger: TGGATTCCATGTCTGTGCTGCTGGATGGATGGCCAAGGGTAGAGTCGGATACCCCATTGTGAAACCTGGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS TCA 72 bp | CTTCAAATTCACATACGGCCTTGGCTTCGGCGTAGGTaGGCTTGTATCTGCCAGCCCGAGCTTCTCTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: LQIHIRPWLRRR*ACICQPELLCG Trigger: ACCACAGAGAAGCTCGGGCTGGCAGATACAAGCTCACCTACGCCGAAGCCAAGGCCGTATGTGAATTTGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS CCA 72 bp | GCCCAGGTTTCACAATGGGGTATCCGACTCTACCCTTaGCCATCCATCCAGCAGCACAGACATGGAATCCAA | + |
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Preference number: 6 (lower is better) Translates to: AQVSQWGIRLYP*PSIQQHRHGIQ Trigger: TTGGATTCCATGTCTGTGCTGCTGGATGGATGGCCAAGGGTAGAGTCGGATACCCCATTGTGAAACCTGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS CCA 72 bp | TTTTCCCAAATCCACAGTTGGGCCCAGGTTTCACAATaGGGTATCCGACTCTACCCTTGGCCATCCATCCAG | + |
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Preference number: 6 (lower is better) Translates to: FSQIHSWAQVSQ*GIRLYPWPSIQ Trigger: CTGGATGGATGGCCAAGGGTAGAGTCGGATACCCCATTGTGAAACCTGGGCCCAACTGTGGATTTGGGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS CAA 90 bp | CCACAGTTGGGCCCAGGTTTCACAATGGGGTATCCGACTCTACCCTaGGCCATCCATCCAGCAGCACAGACATGGAATCCAATTTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PQLGPGFTMGYPTLP*AIHPAAQTWNPIFL Trigger: CAGAAAAATTGGATTCCATGTCTGTGCTGCTGGATGGATGGCCAAGGGTAGAGTCGGATACCCCATTGTGAAACCTGGGCCCAACTGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS TCA 72 bp | AGTCCAAAAAGCTCAGGTGAATTCGCTGACCGTACTTaGGCCGAATGTGCCAGTAGCAGACCTGGTTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: SPKSSGEFADRT*AECASSRPGCH Trigger: ATGACAACCAGGTCTGCTACTGGCACATTCGGCTCAAGTACGGTCAGCGAATTCACCTGAGCTTTTTGGACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS TCA 72 bp | GTTCAAGCCATATGGAGTTATGAAAGATCCCGTTCTTaGATCCCCATCCGTGAGCCTCTTCCCACAGCAAGA | + |
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Preference number: 6 (lower is better) Translates to: VQAIWSYERSRS*IPIREPLPTAR Trigger: TCTTGCTGTGGGAAGAGGCTCACGGATGGGGATTCAAGAACGGGATCTTTCATAACTCCATATGGCTTGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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| CDS GCA 72 bp | AGTAGTACTTGTATTTTTGGCTTGACTGGATTTAGATaGAGGATCCACTGTGACGTATTTAATCTGGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: SSTCIFGLTGFR*RIHCDVFNLEA Trigger: GGCTTCCAGATTAAATACGTCACAGTGGATCCTGCATCTAAATCCAGTCAAGCCAAAAATACAAGTACTACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065927.6 |
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