RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TNFAIP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019850

Ensembl transcript IDs: ENSMUST00000019997.11, ENSMUST00000105527.2, ENSMUST00000122863.2, ENSMUST00000146388.2

Found 234 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCTGCAGAACCTTGGGAGCCAAGTCGGCAGATAGGGAAGCCCATTaGCCACAGATGTGCTCCGCCTACGTCCTGTTTTTCCCTGAGCTT +
Preference number: 1 (lower is better)
Translates to: SCRTLGAKSADREAH*PQMCSAYVLFFPEL
Trigger: AAGCTCAGGGAAAAACAGGACGTAGGCGGAGCACATCTGTGGTCAATGGGCTTCCCTATCTGCCGACTTGGCTCCCAAGGTTCTGCAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 90 bp TCCAGTCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTaGCAGCCAGGCTCAGGAACTGCTGCCAGTCCTAGCACGCATTTC +
Preference number: 1 (lower is better)
Translates to: SSLHPTFPYAFLPVA*QPGSGTAASPSTHF
Trigger: GAAATGCGTGCTAGGACTGGCAGCAGTTCCTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGACTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR GCA 90 bp GTGAACATGTGTCTTTTCAGCAGCCACGGGATCTGTGTGCAGGTCTaGTTTCCTGCAGAACCTTGGGAGCCAAGTCGGCAGATAGGGAAG +
Preference number: 1 (lower is better)
Translates to: VNMCLFSSHGICVQV*FPAEPWEPSRQIGK
Trigger: CTTCCCTATCTGCCGACTTGGCTCCCAAGGTTCTGCAGGAAAGCAGACCTGCACACAGATCCCGTGGCTGCTGAAAAGACACATGTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 90 bp CCTTCCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATaGCAGTTTGAGGCTCCTTCTTGCTGGACCTGTCAATGTGTTCGC +
Preference number: 1 (lower is better)
Translates to: PSCGTQGSGSQYHCE*QFEAPSCWTCQCVR
Trigger: GCGAACACATTGACAGGTCCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR TCA 90 bp TCTTGTGGAGGGCCTTGGAGCTCTGAGAATTCAGCTTTGGCTCTCTaGGAAAAGCTTCCAGCTGGCAGCAGTAGGATGGTTCCAGTCTCC +
Preference number: 1 (lower is better)
Translates to: SCGGPWSSENSALAL*EKLPAGSSRMVPVS
Trigger: GGAGACTGGAACCATCCTACTGCTGCCAGCTGGAAGCTTTTCTCAGAGAGCCAAAGCTGAATTCTCAGAGCTCCAAGGCCCTCCACAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR GCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTaGTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCTTCCT +
Preference number: 1 (lower is better)
Translates to: LMVMAVTKEELILPT*SKTLEATVPGPTLP
Trigger: AGGAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 90 bp CAGCTTTGGCTCTCTGAGAAAAGCTTCCAGCTGGCAGCAGTAGGATaGTTCCAGTCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGT +
Preference number: 1 (lower is better)
Translates to: QLWLSEKSFQLAAVG*FQSPSYFPIRLSSC
Trigger: ACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGACTGGAACCATCCTACTGCTGCCAGCTGGAAGCTTTTCTCAGAGAGCCAAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 90 bp CACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTaGAAAGCAAATATGTTATCTCAAGAAAATACTGCAGAAGGAAAT +
Preference number: 1 (lower is better)
Translates to: HHTPWPGTNQAPRTW*KANMLSQENTAEGN
Trigger: ATTTCCTTCTGCAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CAA 90 bp ATGGTTCCAGTCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGTaGCCTGGCAGCCAGGCTCAGGAACTGCTGCCAGTCCTAGCACGC +
Preference number: 2 (lower is better)
Translates to: MVPVSILLSHTPFFL*PGSQAQELLPVLAR
Trigger: GCGTGCTAGGACTGGCAGCAGTTCCTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGACTGGAACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCAGGCCTACCCTTCCTGTaGCACTCAGGGGTCTGGATC +
Preference number: 2 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPGLPFL*HSGVWI
Trigger: GATCCAGACCCCTGAGTGCCACAGGAAGGGTAGGCC...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR TCA 90 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATGGCCAGGGACTAACCAGCGTCCTGTTTTTCCCTaGGCTTCCTCTAGCATCTTG +
Preference number: 2 (lower is better)
Translates to: QGERRQPSHHTPWPGTNQRPVFP*ASSSIL
Trigger: CAAGATGCTAGAGGAAGCTCAGGGAAAAACAGGACG...CTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR GCA 90 bp CAGAAACTTCCTCGTCCTCACGGCTATTGGCTTTGCTTTCTCAGTGTTCCTATCGCCACGGGATCTGTGTaGAGGTCTGCTTTCCTGCAG +
Preference number: 2 (lower is better)
Translates to: QKLPRPHGYWLCFLSVPIATGSV*RSAFLQ
Trigger: CTGCAGGAAAGCAGACCTGCACACAGATCCCGTGGC...GATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTGAGGACGAGGAAGTTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR GCA 90 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATGGCCAGGGACTAACCAGAGGAAGAGCTTATCTTaGCTACTTGCTCAAAGACAC +
Preference number: 2 (lower is better)
Translates to: QGERRQPSHHTPWPGTNQRKSLS*LLAQRH
Trigger: GTGTCTTTGAGCAAGTAGGCAAGATAAGCTCTTCCT...CTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CAA 90 bp GTTACTAACCTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTaGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCT +
Preference number: 2 (lower is better)
Translates to: VTNLMVMAVTKEELI*PTCSKTLEATVPGP
Trigger: AGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAGGTTAGTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CCA 90 bp CAGAAACTTCCTCGTCCTCACGGCTATTGGCTTTGCTTTCTCAGTGTTCCTATCTTTCTTCCTGTTGCCTaGCAGCCAGGCTCAGGAACT +
Preference number: 2 (lower is better)
Translates to: QKLPRPHGYWLCFLSVPIFLPVA*QPGSGT
Trigger: AGTTCCTGAGCCTGGCTGCCAGGCAACAGGAAGAAA...GATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTGAGGACGAGGAAGTTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CCA 90 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATGGCCAGGGACTAACCAGTTATTCTCTTTGGAATaGGAGACAATGGCCAACACT +
Preference number: 2 (lower is better)
Translates to: QGERRQPSHHTPWPGTNQLFSLE*ETMANT
Trigger: AGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAA...CTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR GCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGGCAGGTCTGCTTTCCTaGAGAACCTTGGGAGCCAAG +
Preference number: 2 (lower is better)
Translates to: TRPPGHGGKQICYLKKILAGLLS*RTLGAK
Trigger: CTTGGCTCCCAAGGTTCTGCAGGAAAGCAGACCTGC...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGCAGTACCACTGTGAATaGCAGTTTGAGGCTCCTTCT +
Preference number: 2 (lower is better)
Translates to: LMVMAVTKEELILPTCSKQYHCE*QFEAPS
Trigger: AGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTG...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CCA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCCAGTACCACTGTGAATaGCAGTTTGAGGCTCCTTCT +
Preference number: 2 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFQYHCE*QFEAPS
Trigger: AGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTG...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR GCA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCACACGGCTATTGGCTTTaGTTTCTCAGTGTTCCTATC +
Preference number: 2 (lower is better)
Translates to: KLYFPPKASPKHTEKLQAHGYWL*FLSVPI
Trigger: GATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTG...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 72 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATaGCCAGGGACTAACCAGGCCCCCAGGACATGGTGG +
Preference number: 3 (lower is better)
Translates to: QGERRQPSHHTP*PGTNQAPRTWW
Trigger: CCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR GCA 72 bp CAGCAGCCACGGGATCTGTGTGCAGGTCTGCTTTCCTaGAGAACCTTGGGAGCCAAGTCGGCAGATAGGGAA +
Preference number: 3 (lower is better)
Translates to: QQPRDLCAGLLS*RTLGAKSADRE
Trigger: TTCCCTATCTGCCGACTTGGCTCCCAAGGTTCTGCAGGAAAGCAGACCTGCACACAGATCCCGTGGCTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR GCA 72 bp TCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTaGCTGGCAGCCAGGCTCAGGAACTGCTGCCAGTCC +
Preference number: 3 (lower is better)
Translates to: SPSYFPIRLSSC*LAARLRNCCQS
Trigger: GGACTGGCAGCAGTTCCTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 72 bp CATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTaGCAGCCAGGCTCAGGAACTGCTGCCAGTCCTAGC +
Preference number: 3 (lower is better)
Translates to: HPTFPYAFLPVA*QPGSGTAASPS
Trigger: GCTAGGACTGGCAGCAGTTCCTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR TCA 72 bp ACCACAGATGTGCTCCGCCTACGTCCTGTTTTTCCCTaGGCTTCCTCTAGCATCTTGTGGAGGGCCTTGGAG +
Preference number: 3 (lower is better)
Translates to: TTDVLRLRPVFP*ASSSILWRALE
Trigger: CTCCAAGGCCCTCCACAAGATGCTAGAGGAAGCTCAGGGAAAAACAGGACGTAGGCGGAGCACATCTGTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR TCA 72 bp ACCTTGGGAGCCAAGTCGGCAGATAGGGAAGCCCATTaGCCACAGATGTGCTCCGCCTACGTCCTGTTTTTC +
Preference number: 3 (lower is better)
Translates to: TLGAKSADREAH*PQMCSAYVLFF
Trigger: GAAAAACAGGACGTAGGCGGAGCACATCTGTGGTCAATGGGCTTCCCTATCTGCCGACTTGGCTCCCAAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR GCA 72 bp ACGAGCAGCAATAGCTTCAGGCTGACCCTGACATCATaGACTGCCGGTAACCAGGTCTACTCTCAGCTCACC +
Preference number: 3 (lower is better)
Translates to: TSSNSFRLTLTS*TAGNQVYSQLT
Trigger: GGTGAGCTGAGAGTAGACCTGGTTACCGGCAGTGCATGATGTCAGGGTCAGCCTGAAGCTATTGCTGCTCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR GCA 72 bp TCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTaGAAGCAGTGGCAGAAACTTCCTCGTCCTCACGGC +
Preference number: 3 (lower is better)
Translates to: SLLKQVQSTQKS*KQWQKLPRPHG
Trigger: GCCGTGAGGACGAGGAAGTTTCTGCCACTGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CAA 90 bp CAGAAACTTCCTCGTCCTCACGGCTATTGGCTTTGCTTTCTCAGTGTTCCTATCGCTTCCTCTAGCATCTaGTGGAGGGCCTTGGAGCTC +
Preference number: 3 (lower is better)
Translates to: QKLPRPHGYWLCFLSVPIASSSI*WRALEL
Trigger: GAGCTCCAAGGCCCTCCACAAGATGCTAGAGGAAGC...GATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTGAGGACGAGGAAGTTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR TCA 72 bp GCTTCCTCTAGCATCTTGTGGAGGGCCTTGGAGCTCTaGGAATTCAGCTTTGGCTCTCTGAGAAAAGCTTCC +
Preference number: 3 (lower is better)
Translates to: ASSSILWRALEL*EFSFGSLRKAS
Trigger: GGAAGCTTTTCTCAGAGAGCCAAAGCTGAATTCTCAGAGCTCCAAGGCCCTCCACAAGATGCTAGAGGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR GCA 72 bp TGGCAGAAACTTCCTCGTCCTCACGGCTATTGGCTTTaGTTTCTCAGTGTTCCTATCCAGTACCCAAGGGCA +
Preference number: 3 (lower is better)
Translates to: WQKLPRPHGYWL*FLSVPIQYPRA
Trigger: TGCCCTTGGGTACTGGATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTGAGGACGAGGAAGTTTCTGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 72 bp CTCTCTGAGAAAAGCTTCCAGCTGGCAGCAGTAGGATaGTTCCAGTCTCCATCCTACTTTCCCATACGCCTT +
Preference number: 3 (lower is better)
Translates to: LSEKSFQLAAVG*FQSPSYFPIRL
Trigger: AAGGCGTATGGGAAAGTAGGATGGAGACTGGAACCATCCTACTGCTGCCAGCTGGAAGCTTTTCTCAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 72 bp AAGCAGTGGCAGAAACTTCCTCGTCCTCACGGCTATTaGCTTTGCTTTCTCAGTGTTCCTATCCAGTACCCA +
Preference number: 3 (lower is better)
Translates to: KQWQKLPRPHGY*LCFLSVPIQYP
Trigger: TGGGTACTGGATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTGAGGACGAGGAAGTTTCTGCCACTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 72 bp CCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTaGAAAGCAAATATGTTATCTCAAGAAAATACTGCA +
Preference number: 3 (lower is better)
Translates to: PWPGTNQAPRTW*KANMLSQENTA
Trigger: TGCAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CAA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCAAAGGAAGAGCTTATCTaGCCTACTTGCTCAAAGACA +
Preference number: 3 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPKEELI*PTCSKT
Trigger: TGTCTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTT...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 72 bp ACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATaGTGGAAAGCAAATATGTTATCTCAAGAAAATACT +
Preference number: 3 (lower is better)
Translates to: TPWPGTNQAPRT*WKANMLSQENT
Trigger: AGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 72 bp TCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATaGCCAACACTGGCATGTCTTCCCACCAGACGTTCT +
Preference number: 3 (lower is better)
Translates to: SVQSYSLWNGRQ*PTLACLPTRRS
Trigger: AGAACGTCTGGTGGGAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CCA 72 bp ATACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATaGGAGACAATGGCCAACACTGGCATGTCTTCCCAC +
Preference number: 3 (lower is better)
Translates to: IHTLSSKLFSLE*ETMANTGMSSH
Trigger: GTGGGAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CAA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGTCAAAGTTATTCTCTTaGGAATGGGAGACAATGGCC +
Preference number: 3 (lower is better)
Translates to: TRPPGHGGKQICYLKKILSKLFS*EWETMA
Trigger: GGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGA...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR-3UTR CAA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCACAACCAGAAAATAGGTaGTTCTTATTCAGTCTTCCT +
Preference number: 3 (lower is better)
Translates to: KLYFPPKASPKHTEKLQAQPENR*FLFSLP
Trigger: AGGAAGACTGAATAAGAACAACCTATTTTCTGGTTG...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGAGTCTCCTGGAGTCCGTaGAGCCTGGGAGAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGVSWSP*SLGEAA
Trigger: GGCTGCCTCTCCCAGGCTGCACGGACTCCAGGAGAC...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGACCCTGCTCTGTCTCCTaGAGTCCGTGCAGCCTGGGA +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGPCSVS*SPCSLG
Trigger: TCCCAGGCTGCACGGACTCCAGGAGACAGAGCAGGG...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGACAGGGATACTGGAAGTaGGGCTGGAGCTGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGQGYWK*GWSWAL
Trigger: CAGAGCCCAGCTCCAGCCTCACTTCCAGTATCCCTG...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGAGTGAGGGGTCAGACTTaGAGCGTTGGTGACAGGAGG +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGVRGQT*SVGDRR
Trigger: CCTCCTGTCACCAACGCTCCAAGTCTGACCCCTCAC...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGCCAGGCTCAGGTCTCCTGGAGTCCGTaGAGCCTGGGAGAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: SILLSHTPFFLLPGSQAQVSWSP*SLGEAA
Trigger: GGCTGCCTCTCCCAGGCTGCACGGACTCCAGGAGAC...CTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATGGCCAGGGACTAACCAGGGAGTCCGTGCAGCCTaGGAGAGGCAGCCAGAAGGA +
Preference number: 4 (lower is better)
Translates to: QGERRQPSHHTPWPGTNQGVRAA*ERQPEG
Trigger: TCCTTCTGGCTGCCTCTCCCAGGCTGCACGGACTCC...CTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGTGCTGTGGGTGGGGCTaGATGAGGTCCTCCAGCGGT +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRCCGWG*MRSSSG
Trigger: ACCGCTGGAGGACCTCATTCAGCCCCACCCACAGCA...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGAACCCTTCAAACATGGTaGTTCCGAGTGTGCCGCACT +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGTLQTW*FRVCRT
Trigger: AGTGCGGCACACTCGGAAGCACCATGTTTGAAGGGT...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCCCTGCTCTGTCTCCTaGAGTCCGTGCAGCCTGGGA +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRPCSVS*SPCSLG
Trigger: TCCCAGGCTGCACGGACTCCAGGAGACAGAGCAGGG...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGAGAGTGTTCACGGACATaGAGAAAGGACAGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGECSRT*RKDSWV
Trigger: CACCCAACTGTCCTTTCTTCATGTCCGTGAACACTC...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGAGTCTCTATGCTGGCTTaGTCTCAGCTGTTCTTCCGT +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGVSMLA*SQLFFR
Trigger: ACGGAAGAACAGCTGAGATCAAGCCAGCATAGAGAC...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATGGCCAGGGACTAACCAGCCGTGGTCCCAGCCTTaGACAGGGATCTCCATCACT +
Preference number: 4 (lower is better)
Translates to: QGERRQPSHHTPWPGTNQPWSQP*TGISIT
Trigger: AGTGATGGAGATCCCTGTGCAAGGCTGGGACCACGG...CTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp TCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCTTCGTGGGCTCACCCCGGTaGGCCACAGAACCTACTCGT +
Preference number: 4 (lower is better)
Translates to: SCLLAQRHLKPLSQGLPFVGSPR*ATEPTR
Trigger: ACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCCCAC...GAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGGGGGCTCTTCAGGCGTaGGCTCACCCCGGTGGGCCA +
Preference number: 4 (lower is better)
Translates to: LMVMAVTKEELILPTCSKGALQA*AHPGGP
Trigger: TGGCCCACCGGGGTGAGCCCACGCCTGAAGAGCCCC...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp GATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGACCTGTCGTGGGTGGGGCTGAATaGGGTCCTCCAGCGGTTTCC +
Preference number: 4 (lower is better)
Translates to: DHSTTVNGSLRLLLAGPVVGGAE*GPPAVS
Trigger: GGAAACCGCTGGAGGACCTCATTCAGCCCCACCCAC...GACAGGTCCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCAGTGGGTGGGGCTGAATaGGGTCCTCCAGCGGTTTCC +
Preference number: 4 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPVGGAE*GPPAVS
Trigger: GGAAACCGCTGGAGGACCTCATTCAGCCCCACCCAC...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGCCAGGCTCAGGACTTGGAGCGTTGGTaGCAGGAGGCAGGGATACTG +
Preference number: 4 (lower is better)
Translates to: SILLSHTPFFLLPGSQAQDLERW*QEAGIL
Trigger: CAGTATCCCTGCCTCCTGTCACCAACGCTCCAAGTC...CTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGTTGGCATTGCCAAAGTaGTCACAAGCAGGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRLALPK*SQAGAR
Trigger: CCGGGCCCCTGCTTGTGATCACTTTGGCAATGCCAA...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp GGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGCACGGGACATTGTTCTaGAACCTGGGGGCCGGGGAA +
Preference number: 4 (lower is better)
Translates to: GSGSQYHCEWQFEAPSCWHGTLF*NLGAGE
Trigger: TTCCCCGGCCCCCAGGTTCCAGAACAATGTCCCGTG...CCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGGTCCGAGTGACATCCTaGAGGCAGGCTTGGCACTTT +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRVRVTS*RQAWHF
Trigger: AAAGTGCCAAGCCTGCCTTCAGGATGTCACTCGGAC...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGTGCAGCCAGCTTTCCTaGACTTGCTTGTCCCTGCTC +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRCSQLS*TCLSLL
Trigger: GAGCAGGGACAAGCAAGTGCAGGAAAGCTGGCTGCA...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCTTCGTCCGAGTGACATCCTaGAGGCAGGCTTGGCACTTT +
Preference number: 4 (lower is better)
Translates to: SCLLAQRHLKPLSQGLPFVRVTS*RQAWHF
Trigger: AAAGTGCCAAGCCTGCCTTCAGGATGTCACTCGGAC...GAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGACAGCTTTCCGCATATTaGTCAAATACAAAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGQLSAY*SNTKPE
Trigger: CTCAGGCTTTGTATTTGAGCAATATGCGGAAAGCTG...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATGGCCAGGGACTAACCAGGCTGGAGCTGGGCTCTaGTGTAGTCCTTTTGAAACA +
Preference number: 4 (lower is better)
Translates to: QGERRQPSHHTPWPGTNQAGAGL*CSPFET
Trigger: TGTTTCAAAAGGACTACAGCAGAGCCCAGCTCCAGC...CTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp GGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGAGGCCAGAATGTTCTTaGAGGAGGCCCGGGCACATT +
Preference number: 4 (lower is better)
Translates to: GSGSQYHCEWQFEAPSCWRPECS*RRPGHI
Trigger: AATGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCT...CCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCGTGAGGGGTCAGACTTaGAGCGTTGGTGACAGGAGG +
Preference number: 4 (lower is better)
Translates to: LILPTCSKTLEATVPGPTVRGQT*SVGDRR
Trigger: CCTCCTGTCACCAACGCTCCAAGTCTGACCCCTCAC...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCCGGTGGCAAGAGTGTaGAGTGAGACTTTGGATGAG +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRPVARV*SETLDE
Trigger: CTCATCCAAAGTCTCACTCCACACTCTTGCCACCGG...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGAGTACCCTTCAAACATaGTGCTTCCGAGTGTGCCGC +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRSTLQT*CFRVCR
Trigger: GCGGCACACTCGGAAGCACCATGTTTGAAGGGTACT...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp GGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGACACCCCACATGTACTaGCAAGCTGCATGCATGAGG +
Preference number: 4 (lower is better)
Translates to: GSGSQYHCEWQFEAPSCWTPHMY*QAACMR
Trigger: CCTCATGCATGCAGCTTGTCAGTACATGTGGGGTGT...CCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATGGCCAGGGACTAACCAGCTGCTGATGCCATTTTaGCCAAGTTGTCCCATTCGT +
Preference number: 4 (lower is better)
Translates to: QGERRQPSHHTPWPGTNQLLMPF*PSCPIR
Trigger: ACGAATGGGACAACTTGGTCAAAATGGCATCAGCAG...CTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCTTCTCCAGGGAATTGTACTaGAGTCCACTTCGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: SCLLAQRHLKPLSQGLPFSRELY*SPLRAA
Trigger: TGCAGCCCGAAGTGGACTTCAGTACAATTCCCTGGA...GAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGCCAGGCTCAGGAGTGTTCACGGACATaGAGAAAGGACAGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: SILLSHTPFFLLPGSQAQECSRT*RKDSWV
Trigger: CACCCAACTGTCCTTTCTTCATGTCCGTGAACACTC...CTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGCCAGGCTCAGTCGTGGCATAAAGGCTaGGTGTTCACGGACATGAAG +
Preference number: 4 (lower is better)
Translates to: SILLSHTPFFLLPGSQAQSWHKG*VFTDMK
Trigger: CTTCATGTCCGTGAACACTCAGCCTTTATGCCACGA...CTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGTTTGGGAGCTTGCTCTaGTTCTTTTGGCGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRFGSLL*FFWRLS
Trigger: AGAGAGGCGCCAAAAGAATCAGAGCAAGCTCCCAAA...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCTTCGGCACATTTCAGCCTTaGGGCTACCTGTGTAGTTCG +
Preference number: 4 (lower is better)
Translates to: SCLLAQRHLKPLSQGLPFGTFQP*GYLCSS
Trigger: CGAACTACACAGGTAGCCTCAAGGCTGAAATGTGCC...GAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp GGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGGGCACATTTCAGCCTTaGGGCTACCTGTGTAGTTCG +
Preference number: 4 (lower is better)
Translates to: GSGSQYHCEWQFEAPSCWGTFQP*GYLCSS
Trigger: CGAACTACACAGGTAGCCTCAAGGCTGAAATGTGCC...CCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGAACTTCTGTCAATAAGTaGTTTGTGGATGATCTCTCG +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGTSVNK*FVDDLS
Trigger: CGAGAGATCATCCACAAAGCACTTATTGACAGAAGT...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCAAGGCCAGAATGTTCTTaGAGGAGGCCCGGGCACATT +
Preference number: 4 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPRPECS*RRPGHI
Trigger: AATGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCT...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGATCAATAAGTGCTTTGTaGATGATCTCTCGGAACTGT +
Preference number: 4 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGSISAL*MISRNC
Trigger: ACAGTTCCGAGAGATCATCCACAAAGCACTTATTGA...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CAA 72 bp AGGAAGAGCTTATCTTGCCTACTTGCTCAAAGACACTaGAAGCCACTGTCCCAGGGCCTACCCTTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: RKSLSCLLAQRH*KPLSQGLPFLW
Trigger: CCACAGGAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAGCTCTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CAAGGAGAGAGAAGACAGCCATCCCACCACACTCCATGGCCAGGGACTAACCAGCTCAAATACAAAGCCTaGGGAAGAAGTTGTTCAGCC +
Preference number: 4 (lower is better)
Translates to: QGERRQPSHHTPWPGTNQLKYKA*GRSCSA
Trigger: GGCTGAACAACTTCTTCCTCAGGCTTTGTATTTGAG...CTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATGGCTGTCTTCTCTCTCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGTTGGCATTGCCAAAGTaGTCACAAGCAGGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: LMVMAVTKEELILPTCSKLALPK*SQAGAR
Trigger: CCGGGCCCCTGCTTGTGATCACTTTGGCAATGCCAA...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGCCAGGCTCAGGAGTCCCAAAATACATaGAGCCAGCTTTCCTGCACT +
Preference number: 4 (lower is better)
Translates to: SILLSHTPFFLLPGSQAQESQNT*SQLSCT
Trigger: AGTGCAGGAAAGCTGGCTGCATGTATTTTGGGACTC...CTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CAGAAACTTCCTCGTCCTCACGGCTATTGGCTTTGCTTTCTCAGTGTTCCTATCAAAGGCTGGGTGCTGTaGGTGGGGCTGAATGAGGTC +
Preference number: 4 (lower is better)
Translates to: QKLPRPHGYWLCFLSVPIKGWVL*VGLNEV
Trigger: GACCTCATTCAGCCCCACCCACAGCACCCAGCCTTT...GATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTGAGGACGAGGAAGTTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCCGGTGGCAAGAGTGTaGAGTGAGACTTTGGATGAG +
Preference number: 4 (lower is better)
Translates to: LILPTCSKTLEATVPGPTPVARV*SETLDE
Trigger: CTCATCCAAAGTCTCACTCCACACTCTTGCCACCGG...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp GATGGTTCCAGTCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGAGTACCCTTCAAACATaGTGCTTCCGAGTGTGCCGC +
Preference number: 4 (lower is better)
Translates to: DGSSLHPTFPYAFLPVAWSTLQT*CFRVCR
Trigger: GCGGCACACTCGGAAGCACCATGTTTGAAGGGTACT...CCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGACTGGAACCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp GATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGACCTGTCACAGAACCTACTCGTTaGCTTAGGTGCTGGCACTCC +
Preference number: 4 (lower is better)
Translates to: DHSTTVNGSLRLLLAGPVTEPTR*LRCWHS
Trigger: GGAGTGCCAGCACCTAAGCCAACGAGTAGGTTCTGT...GACAGGTCCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCACTTCACGACACCAGTTaGGCTTCTTCTGGCTTTCCA +
Preference number: 4 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPLHDTS*ASSGFP
Trigger: TGGAAAGCCAGAAGAAGCTCAACTGGTGTCGTGAAG...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCTTCCTGCTGATGCCATTTTaGCCAAGTTGTCCCATTCGT +
Preference number: 4 (lower is better)
Translates to: SCLLAQRHLKPLSQGLPFLLMPF*PSCPIR
Trigger: ACGAATGGGACAACTTGGTCAAAATGGCATCAGCAG...GAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCATGCTGTGGGTGGGGCTaGATGAGGTCCTCCAGCGGT +
Preference number: 4 (lower is better)
Translates to: KLYFPPKASPKHTEKLQACCGWG*MRSSSG
Trigger: ACCGCTGGAGGACCTCATTCAGCCCCACCCACAGCA...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCTTCAGCCATACATCTGCTTaGACTGGTAGCACTCATTGC +
Preference number: 4 (lower is better)
Translates to: SCLLAQRHLKPLSQGLPFSHTSA*TGSTHC
Trigger: GCAATGAGTGCTACCAGTTCAAGCAGATGTATGGCT...GAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp GGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGAGCCATACATCTGCTTaGACTGGTAGCACTCATTGC +
Preference number: 4 (lower is better)
Translates to: GSGSQYHCEWQFEAPSCWSHTSA*TGSTHC
Trigger: GCAATGAGTGCTACCAGTTCAAGCAGATGTATGGCT...CCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCTTCTACAGAGTTCCTCACTaGGACAGGCCAGAATGTTCT +
Preference number: 4 (lower is better)
Translates to: SCLLAQRHLKPLSQGLPFYRVPH*DRPECS
Trigger: AGAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTA...GAAGGGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCAGGAGTCCGTGCAGCCTaGGAGAGGCAGCCAGAAGGA +
Preference number: 4 (lower is better)
Translates to: KLYFPPKASPKHTEKLQAGVRAA*ERQPEG
Trigger: TCCTTCTGGCTGCCTCTCCCAGGCTGCACGGACTCC...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGCACGGGACATTGTTCTaGAACCTGGGGGCCGGGGAA +
Preference number: 4 (lower is better)
Translates to: TRPPGHGGKQICYLKKILHGTLF*NLGAGE
Trigger: TTCCCCGGCCCCCAGGTTCCAGAACAATGTCCCGTG...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCGTGGGCTCACCCCGGTaGGCCACAGAACCTACTCGT +
Preference number: 4 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFVGSPR*ATEPTR
Trigger: ACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCCCAC...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CAA 72 bp AGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTaGAGGCTCCTTCTTGCTGGACCTGTCAATGTGTTC +
Preference number: 4 (lower is better)
Translates to: RGLDHSTTVNGS*RLLLAGPVNVF
Trigger: GAACACATTGACAGGTCCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACAGGGATACTGGAAGTaGGGCTGGAGCTGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: YTPSVQSYSLWNGRQWPTQGYWK*GWSWAL
Trigger: CAGAGCCCAGCTCCAGCCTCACTTCCAGTATCCCTG...TGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGACTTTGGATGAGTTGTaGGGGGTCAGACTTGGAGCG +
Preference number: 4 (lower is better)
Translates to: LMVMAVTKEELILPTCSKTLDEL*GVRLGA
Trigger: CGCTCCAAGTCTGACCCCTCACAACTCATCCAAAGT...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGTCGATGAAACACTTCTaGCAGTACCCTTCAAACATG +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRSMKHF*QYPSNM
Trigger: CATGTTTGAAGGGTACTGTCAGAAGTGTTTCATCGA...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCAGGTTCTGAGCTTCGATaGAACACTTCTGACAGTACC +
Preference number: 4 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPGSELR*NTSDST
Trigger: GGTACTGTCAGAAGTGTTTCATCGAAGCTCAGAACC...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCACTCCTGCACTTCATTaGAGTGGTCTCACTGAAGAG +
Preference number: 4 (lower is better)
Translates to: LILPTCSKTLEATVPGPTTPALH*SGLTEE
Trigger: CTCTTCAGTGAGACCACTGCAATGAAGTGCAGGAGT...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCAGAGTCCCAAAATACATaGAGCCAGCTTTCCTGCACT +
Preference number: 4 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPESQNT*SQLSCT
Trigger: AGTGCAGGAAAGCTGGCTGCATGTATTTTGGGACTC...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCTACAGAGTTCCTCACTaGGACAGGCCAGAATGTTCT +
Preference number: 4 (lower is better)
Translates to: LILPTCSKTLEATVPGPTYRVPH*DRPECS
Trigger: AGAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTA...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGCCAGGCTCAGCATTACACTTGGCATTaGCAAAGTGATCACAAGCAG +
Preference number: 4 (lower is better)
Translates to: SILLSHTPFFLLPGSQAQHYTWH*QSDHKQ
Trigger: CTGCTTGTGATCACTTTGGCAATGCCAAGTGTAATG...CTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCAGTCTCTGTTAACAAGTaGAACAGCGCGAAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPVSVNK*NSAKFR
Trigger: CCTGAACTTCGCGCTGTTCCACTTGTTAACAGAGAC...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CAA 72 bp CTGTCTAGAAGGTGCATACAGCCGAGAGCGAGCAGCTaGGTTTGTCTCCATGTGAACATGTGTCTTTTCAGC +
Preference number: 4 (lower is better)
Translates to: LSRRCIQPRASS*VCLHVNMCLFS
Trigger: GCTGAAAAGACACATGTTCACATGGAGACAAACCAAGCTGCTCGCTCTCGGCTGTATGCACCTTCTAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGTTTGGGAGCTTGCTCTaGTTCTTTTGGCGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: LMVMAVTKEELILPTCSKFGSLL*FFWRLS
Trigger: AGAGAGGCGCCAAAAGAATCAGAGCAAGCTCCCAAA...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp GGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGTCGATGAAACACTTCTaGCAGTACCCTTCAAACATG +
Preference number: 4 (lower is better)
Translates to: GSGSQYHCEWQFEAPSCWSMKHF*QYPSNM
Trigger: CATGTTTGAAGGGTACTGTCAGAAGTGTTTCATCGA...CCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp GATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGACCTGTCTGGAATCTCTGGTTCTaGGCTTCGATGAAACACTTC +
Preference number: 4 (lower is better)
Translates to: DHSTTVNGSLRLLLAGPVWNLWF*ASMKHF
Trigger: GAAGTGTTTCATCGAAGCTCAGAACCAGAGATTCCA...GACAGGTCCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp GGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGCAGCTTTCCGCATATTaGTCAAATACAAAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: GSGSQYHCEWQFEAPSCWQLSAY*SNTKPE
Trigger: CTCAGGCTTTGTATTTGAGCAATATGCGGAAAGCTG...CCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGCCAGGCTCAGACTTCTGTCAATAAGTaGTTTGTGGATGATCTCTCG +
Preference number: 4 (lower is better)
Translates to: SILLSHTPFFLLPGSQAQTSVNK*FVDDLS
Trigger: CGAGAGATCATCCACAAAGCACTTATTGACAGAAGT...CTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCACCGTGGTCCCAGCCTTaGACAGGGATCTCCATCACT +
Preference number: 4 (lower is better)
Translates to: KLYFPPKASPKHTEKLQAPWSQP*TGISIT
Trigger: AGTGATGGAGATCCCTGTGCAAGGCTGGGACCACGG...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGTGCAGCCAGCTTTCCTaGACTTGCTTGTCCCTGCTC +
Preference number: 4 (lower is better)
Translates to: TRPPGHGGKQICYLKKILCSQLS*TCLSLL
Trigger: GAGCAGGGACAAGCAAGTGCAGGAAAGCTGGCTGCA...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCAAAAGGCTGGGTGCTGTaGGTGGGGCTGAATGAGGTC +
Preference number: 4 (lower is better)
Translates to: KLYFPPKASPKHTEKLQAKGWVL*VGLNEV
Trigger: GACCTCATTCAGCCCCACCCACAGCACCCAGCCTTT...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
3UTR CAA 72 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTaGCCTACTTGCTCAAAGACACTTGAAGCCACTGTC +
Preference number: 4 (lower is better)
Translates to: LMVMAVTKEELI*PTCSKTLEATV
Trigger: GACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCGTTTCCACAAATTCCTaGGATTTCAGAGATTCCAGC +
Preference number: 4 (lower is better)
Translates to: LILPTCSKTLEATVPGPTVSTNS*DFRDSS
Trigger: GCTGGAATCTCTGAAATCTCAGGAATTTGTGGAAAC...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGACTTTGGATGAGTTGTaGGGGGTCAGACTTGGAGCG +
Preference number: 4 (lower is better)
Translates to: TRPPGHGGKQICYLKKILTLDEL*GVRLGA
Trigger: CGCTCCAAGTCTGACCCCTCACAACTCATCCAAAGT...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCGGCACCCAGGACTCCTaGACTTCATTGCAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFGTQDS*TSLQWS
Trigger: AGACCACTGCAATGAAGTGCAGGAGTCCTGGGTGCC...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGCCAGGCTCAGCAGAATCCATTATGCTaGACATTCAAAGTAAAAGGG +
Preference number: 4 (lower is better)
Translates to: SILLSHTPFFLLPGSQAQQNPLC*TFKVKG
Trigger: CCCTTTTACTTTGAATGTGCAGCATAATGGATTCTG...CTGAGCCTGGCTGCCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGTCAAAGGAGCAAAATTaGAACCAGATTCCAAACTTC +
Preference number: 4 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRSKEQN*NQIPNF
Trigger: GAAGTTTGGAATCTGGTTCCAATTTTGCTCCTTTGA...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGACAGAACCTACTCGTTaGCTTAGGTGCTGGCACTCC +
Preference number: 4 (lower is better)
Translates to: TRPPGHGGKQICYLKKILTEPTR*LRCWHS
Trigger: GGAGTGCCAGCACCTAAGCCAACGAGTAGGTTCTGT...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGCTCAAATACAAAGCCTaGGGAAGAAGTTGTTCAGCC +
Preference number: 4 (lower is better)
Translates to: LMVMAVTKEELILPTCSKLKYKA*GRSCSA
Trigger: GGCTGAACAACTTCTTCCTCAGGCTTTGTATTTGAG...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCTCCAGGGAATTGTACTaGAGTCCACTTCGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFSRELY*SPLRAA
Trigger: TGCAGCCCGAAGTGGACTTCAGTACAATTCCCTGGA...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGTGGAATCTCTGGTTCTaGGCTTCGATGAAACACTTC +
Preference number: 4 (lower is better)
Translates to: LMVMAVTKEELILPTCSKWNLWF*ASMKHF
Trigger: GAAGTGTTTCATCGAAGCTCAGAACCAGAGATTCCA...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGTCAGCTTTGGGAGCTTaGTCTGATTCTTTTGGCGCC +
Preference number: 4 (lower is better)
Translates to: TRPPGHGGKQICYLKKILSALGA*SDSFGA
Trigger: GGCGCCAAAAGAATCAGAGCAAGCTCCCAAAGCTGA...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp GATGGTTCCAGTCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCTGAGGACAAATATGTaGATTTCTTCCAGGGAATTG +
Preference number: 4 (lower is better)
Translates to: DGSSLHPTFPYAFLPVAWLRTNM*ISSREL
Trigger: CAATTCCCTGGAAGAAATCCACATATTTGTCCTCAG...CCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGACTGGAACCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp GATGGTTCCAGTCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGAGTAACCATTACACTTaGCATTGCCAAAGTGATCAC +
Preference number: 4 (lower is better)
Translates to: DGSSLHPTFPYAFLPVAWSNHYT*HCQSDH
Trigger: GTGATCACTTTGGCAATGCCAAGTGTAATGGTTACT...CCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGACTGGAACCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTTCACGACACCAGTTaGGCTTCTTCTGGCTTTCCA +
Preference number: 4 (lower is better)
Translates to: YTPSVQSYSLWNGRQWPTLHDTS*ASSGFP
Trigger: TGGAAAGCCAGAAGAAGCTCAACTGGTGTCGTGAAG...TGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCATCGTGGCATAAAGGCTaGGTGTTCACGGACATGAAG +
Preference number: 4 (lower is better)
Translates to: KLYFPPKASPKHTEKLQASWHKG*VFTDMK
Trigger: CTTCATGTCCGTGAACACTCAGCCTTTATGCCACGA...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCGTCTCTATGCTGGCTTaGTCTCAGCTGTTCTTCCGT +
Preference number: 4 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFVSMLA*SQLFFR
Trigger: ACGGAAGAACAGCTGAGATCAAGCCAGCATAGAGAC...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACATCAGCTTTGGGAGCTTaGTCTGATTCTTTTGGCGCC +
Preference number: 4 (lower is better)
Translates to: YTPSVQSYSLWNGRQWPTSALGA*SDSFGA
Trigger: GGCGCCAAAAGAATCAGAGCAAGCTCCCAAAGCTGA...TGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGACTCCTGCACTTCATTaGAGTGGTCTCACTGAAGAG +
Preference number: 4 (lower is better)
Translates to: TRPPGHGGKQICYLKKILTPALH*SGLTEE
Trigger: CTCTTCAGTGAGACCACTGCAATGAAGTGCAGGAGT...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCACAGAATCCATTATGCTaGACATTCAAAGTAAAAGGG +
Preference number: 4 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPQNPLC*TFKVKG
Trigger: CCCTTTTACTTTGAATGTGCAGCATAATGGATTCTG...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACAGCTGGAGCTGGGCTCTaGTGTAGTCCTTTTGAAACA +
Preference number: 4 (lower is better)
Translates to: YTPSVQSYSLWNGRQWPTAGAGL*CSPFET
Trigger: TGTTTCAAAAGGACTACAGCAGAGCCCAGCTCCAGC...TGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCATTTGAAAATGTCTTCTaGGGTTCTCTCTCGTATCTT +
Preference number: 4 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPFENVF*GSLSYL
Trigger: AAGATACGAGAGAGAACCCCAGAAGACATTTTCAAA...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCGGTTCTGAGCTTCGATaGAACACTTCTGACAGTACC +
Preference number: 4 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFGSELR*NTSDST
Trigger: GGTACTGTCAGAAGTGTTTCATCGAAGCTCAGAACC...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCAGTCTCTGTTAACAAGTaGAACAGCGCGAAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: KLYFPPKASPKHTEKLQAVSVNK*NSAKFR
Trigger: CCTGAACTTCGCGCTGTTCCACTTGTTAACAGAGAC...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGAGTAACCATTACACTTaGCATTGCCAAAGTGATCAC +
Preference number: 4 (lower is better)
Translates to: LMVMAVTKEELILPTCSKSNHYT*HCQSDH
Trigger: GTGATCACTTTGGCAATGCCAAGTGTAATGGTTACT...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGCATTACACTTGGCATTaGCAAAGTGATCACAAGCAG +
Preference number: 4 (lower is better)
Translates to: TRPPGHGGKQICYLKKILHYTWH*QSDHKQ
Trigger: CTGCTTGTGATCACTTTGGCAATGCCAAGTGTAATG...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCACTTCGAGTTCAGCTTTaGGAGCTTGCTCTGATTCTT +
Preference number: 4 (lower is better)
Translates to: KLYFPPKASPKHTEKLQALRVQL*ELALIL
Trigger: AAGAATCAGAGCAAGCTCCCAAAGCTGAACTCGAAG...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR TCA 90 bp TACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACAGTTTCCACAAATTCCTaGGATTTCAGAGATTCCAGC +
Preference number: 4 (lower is better)
Translates to: YTPSVQSYSLWNGRQWPTVSTNS*DFRDSS
Trigger: GCTGGAATCTCTGAAATCTCAGGAATTTGTGGAAAC...TGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR GCA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCTTCAGAGATTCCAGCTaGCAGCGGAATTTAAAGTTC +
Preference number: 4 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFFRDSS*QRNLKF
Trigger: GAACTTTAAATTCCGCTGGCAGCTGGAATCTCTGAA...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp TACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACATCAATAAGTGCTTTGTaGATGATCTCTCGGAACTGT +
Preference number: 4 (lower is better)
Translates to: YTPSVQSYSLWNGRQWPTSISAL*MISRNC
Trigger: ACAGTTCCGAGAGATCATCCACAAAGCACTTATTGA...TGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGTCAAAGGAGCAAAATTaGAACCAGATTCCAAACTTC +
Preference number: 4 (lower is better)
Translates to: TRPPGHGGKQICYLKKILSKEQN*NQIPNF
Trigger: GAAGTTTGGAATCTGGTTCCAATTTTGCTCCTTTGA...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CCA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCTTTGAAAATGTCTTCTaGGGTTCTCTCTCGTATCTT +
Preference number: 4 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFFENVF*GSLSYL
Trigger: AAGATACGAGAGAGAACCCCAGAAGACATTTTCAAA...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 90 bp CGGCAGCGCTGTTTAGGGGGCTCTTCAGGCGTGGGCTCACCCCGGTaGGCCACAGAACCTACTCGTTGGCTTAGGTGCTGGCACTCCATA +
Preference number: 5 (lower is better)
Translates to: RQRCLGGSSGVGSPR*ATEPTRWLRCWHSI
Trigger: TATGGAGTGCCAGCACCTAAGCCAACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCCCACGCCTGAAGAGCCCCCTAAACAGCGCTGCCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGAGCCGTGGTCCCAGCCTaGCACAGGGATCTCCATCAC +
Preference number: 5 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGAVVPA*HRDLHH
Trigger: GTGATGGAGATCCCTGTGCAAGGCTGGGACCACGGC...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp GACAGTACCCTTCAAACATGGTGCTTCCGAGTGTGCCGCACTCCCTaGCCAGGCACGGGACATTGTTCTGGAACCTGGGGGCCGGGGAAC +
Preference number: 5 (lower is better)
Translates to: DSTLQTWCFRVCRTP*PGTGHCSGTWGPGN
Trigger: GTTCCCCGGCCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGGCAGGGAGTGCGGCACACTCGGAAGCACCATGTTTGAAGGGTACTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 90 bp CTTCCGAGTGTGCCGCACTCCCTGCCCAGGCACGGGACATTGTTCTaGAACCTGGGGGCCGGGGAACCAGCTTTCTCAGAGGCAGTAACA +
Preference number: 5 (lower is better)
Translates to: LPSVPHSLPRHGTLF*NLGAGEPAFSEAVT
Trigger: TGTTACTGCCTCTGAGAAAGCTGGTTCCCCGGCCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGGCAGGGAGTGCGGCACACTCGGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp GGTCCGAGTGACATCCTGAAGGCAGGCTTGGCACTTTCCAGGGTCTaGGGTGTGGCTGGCATTAATCTGCCGGGCGTGGCAACGCTCACA +
Preference number: 5 (lower is better)
Translates to: GPSDILKAGLALSRV*GVAGINLPGVATLT
Trigger: TGTGAGCGTTGCCACGCCCGGCAGATTAATGCCAGCCACACCGCAGACCCTGGAAAGTGCCAAGCCTGCCTTCAGGATGTCACTCGGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp GTGGGCTCACCCCGGTGGGCCACAGAACCTACTCGTTGGCTTAGGTaGTGGCACTCCATACAGAGTTCCTCACTGCGACAGGCCAGAATG +
Preference number: 5 (lower is better)
Translates to: VGSPRWATEPTRWLR*WHSIQSSSLRQARM
Trigger: CATTCTGGCCTGTCGCAGTGAGGAACTCTGTATGGAGTGCCAGCACCTAAGCCAACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 90 bp TCTTCAGGCGTGGGCTCACCCCGGTGGGCCACAGAACCTACTCGTTaGCTTAGGTGCTGGCACTCCATACAGAGTTCCTCACTGCGACAG +
Preference number: 5 (lower is better)
Translates to: SSGVGSPRWATEPTR*LRCWHSIQSSSLRQ
Trigger: CTGTCGCAGTGAGGAACTCTGTATGGAGTGCCAGCACCTAAGCCAACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCCCACGCCTGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 90 bp GGCTCACCCCGGTGGGCCACAGAACCTACTCGTTGGCTTAGGTGCTaGCACTCCATACAGAGTTCCTCACTGCGACAGGCCAGAATGTTC +
Preference number: 5 (lower is better)
Translates to: GSPRWATEPTRWLRC*HSIQSSSLRQARMF
Trigger: GAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTATGGAGTGCCAGCACCTAAGCCAACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 90 bp GGGGTGTGGAAGGCTCCAAGGGGTTCTGCGCATGTGCCGCTCTCCTaGCCTGATCGCTGTTCTCCTGCCATTTCTTGTATTCGTGCTGAA +
Preference number: 5 (lower is better)
Translates to: GVWKAPRGSAHVPLS*PDRCSPAISCIRAE
Trigger: TTCAGCACGAATACAAGAAATGGCAGGAGAACAGCGATCAGGCCAGGAGAGCGGCACATGCGCAGAACCCCTTGGAGCCTTCCACACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCCTCGGGGCTCCAGTTaGAGGAGCCAAGTCCCACGC +
Preference number: 5 (lower is better)
Translates to: LILPTCSKTLEATVPGPTPRGSS*RSQVPR
Trigger: GCGTGGGACTTGGCTCCTCAAACTGGAGCCCCGAGG...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCCCCAGGCACGGGACATaGTTCTGGAACCTGGGGGCC +
Preference number: 5 (lower is better)
Translates to: LILPTCSKTLEATVPGPTPRHGT*FWNLGA
Trigger: GGCCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGG...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 90 bp GTGAGACTTTGGATGAGTTGTGAGGGGTCAGACTTGGAGCGTTGGTaGCAGGAGGCAGGGATACTGGAAGTGAGGCTGGAGCTGGGCTCT +
Preference number: 5 (lower is better)
Translates to: VRLWMSCEGSDLERW*QEAGILEVRLELGS
Trigger: AGAGCCCAGCTCCAGCCTCACTTCCAGTATCCCTGCCTCCTGTCACCAACGCTCCAAGTCTGACCCCTCACAACTCATCCAAAGTCTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp CAGGCTTGGCACTTTCCAGGGTCTGCGGTGTGGCTGGCATTAATCTaGCGGGCGTGGCAACGCTCACAGAATCCATTATGCTGCACATTC +
Preference number: 5 (lower is better)
Translates to: QAWHFPGSAVWLALI*RAWQRSQNPLCCTF
Trigger: GAATGTGCAGCATAATGGATTCTGTGAGCGTTGCCACGCCCGGCAGATTAATGCCAGCCACACCGCAGACCCTGGAAAGTGCCAAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGATCTGCTGATGCCATTTaGACCAAGTTGTCCCATTCG +
Preference number: 5 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGSADAI*TKLSHS
Trigger: CGAATGGGACAACTTGGTCAAAATGGCATCAGCAGA...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp GATGGTTCCAGTCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGGCCGTGGTCCCAGCCTaGCACAGGGATCTCCATCAC +
Preference number: 5 (lower is better)
Translates to: DGSSLHPTFPYAFLPVAWAVVPA*HRDLHH
Trigger: GTGATGGAGATCCCTGTGCAAGGCTGGGACCACGGC...CCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGACTGGAACCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 90 bp TCCAGTCCGGTGGCAAGAGTGTGGAGTGAGACTTTGGATGAGTTGTaGGGGGTCAGACTTGGAGCGTTGGTGACAGGAGGCAGGGATACT +
Preference number: 5 (lower is better)
Translates to: SSPVARVWSETLDEL*GVRLGALVTGGRDT
Trigger: AGTATCCCTGCCTCCTGTCACCAACGCTCCAAGTCTGACCCCTCACAACTCATCCAAAGTCTCACTCCACACTCTTGCCACCGGACTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp CTACTCGTTGGCTTAGGTGCTGGCACTCCATACAGAGTTCCTCACTaGGACAGGCCAGAATGTTCTTGCAGGAGGCCCGGGCACATTTCA +
Preference number: 5 (lower is better)
Translates to: LLVGLGAGTPYRVPH*DRPECSCRRPGHIS
Trigger: TGAAATGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTATGGAGTGCCAGCACCTAAGCCAACGAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 90 bp TTGAAACAGGTACTGCAGATGCCATTAAAGGTCCGAGTGACATCCTaGAGGCAGGCTTGGCACTTTCCAGGGTCTGCGGTGTGGCTGGCA +
Preference number: 5 (lower is better)
Translates to: LKQVLQMPLKVRVTS*RQAWHFPGSAVWLA
Trigger: TGCCAGCCACACCGCAGACCCTGGAAAGTGCCAAGCCTGCCTTCAGGATGTCACTCGGACCTTTAATGGCATCTGCAGTACCTGTTTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp GATCACAGTACCACTGTGAATGGCAGTTTGAGGCTCCTTCTTGCTGGACCTGTCGTCAGACTTGGAGCGTaGGTGACAGGAGGCAGGGAT +
Preference number: 5 (lower is better)
Translates to: DHSTTVNGSLRLLLAGPVVRLGA*VTGGRD
Trigger: ATCCCTGCCTCCTGTCACCAACGCTCCAAGTCTGAC...GACAGGTCCAGCAAGAAGGAGCCTCAAACTGCCATTCACAGTGGTACTGTGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp CTGGGAGTCCTTCAGGGCCTAGCTTCGAGTTCAGCTTTGGGAGCTTaGTCTGATTCTTTTGGCGCCTCTCTGAGCATTCGTGGCATAAAG +
Preference number: 5 (lower is better)
Translates to: LGVLQGLASSSALGA*SDSFGASLSIRGIK
Trigger: CTTTATGCCACGAATGCTCAGAGAGGCGCCAAAAGAATCAGAGCAAGCTCCCAAAGCTGAACTCGAAGCTAGGCCCTGAAGGACTCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGCAGGCCAGAATGTTCTaGCAGGAGGCCCGGGCACAT +
Preference number: 5 (lower is better)
Translates to: LMVMAVTKEELILPTCSKQARMF*QEARAH
Trigger: ATGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCTG...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 90 bp ACTGAAGTCCACTTCGGGCTGCAGGTGTGTCTGCTGATGCCATTTTaGCCAAGTTGTCCCATTCGTCATTCCAGTTCCGAGTGTCGTAGC +
Preference number: 5 (lower is better)
Translates to: TEVHFGLQVCLLMPF*PSCPIRHSSSECRS
Trigger: GCTACGACACTCGGAACTGGAATGACGAATGGGACAACTTGGTCAAAATGGCATCAGCAGACACACCTGCAGCCCGAAGTGGACTTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp CTGCACATTCAAAGTAAAAGGGCACCCAGGACTCCTGCACTTCATTaGAGTGGTCTCACTGAAGAGAAAAAGGCTGGGTGCTGTGGGTGG +
Preference number: 5 (lower is better)
Translates to: LHIQSKRAPRTPALH*SGLTEEKKAGCCGW
Trigger: CCACCCACAGCACCCAGCCTTTTTCTCTTCAGTGAGACCACTGCAATGAAGTGCAGGAGTCCTGGGTGCCCTTTTACTTTGAATGTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp CTGGCATTAATCTGCCGGGCGTGGCAACGCTCACAGAATCCATTATaGTGCACATTCAAAGTAAAAGGGCACCCAGGACTCCTGCACTTC +
Preference number: 5 (lower is better)
Translates to: LALICRAWQRSQNPL*CTFKVKGHPGLLHF
Trigger: GAAGTGCAGGAGTCCTGGGTGCCCTTTTACTTTGAATGTGCAGCATAATGGATTCTGTGAGCGTTGCCACGCCCGGCAGATTAATGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp GTGACAGGAGGCAGGGATACTGGAAGTGAGGCTGGAGCTGGGCTCTaGTGTAGTCCTTTTGAAACAGGTACTGCAGATGCCATTAAAGGT +
Preference number: 5 (lower is better)
Translates to: VTGGRDTGSEAGAGL*CSPFETGTADAIKG
Trigger: ACCTTTAATGGCATCTGCAGTACCTGTTTCAAAAGGACTACAGCAGAGCCCAGCTCCAGCCTCACTTCCAGTATCCCTGCCTCCTGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 90 bp AAAGGACAGTTGGGTGTCTCACATTTTATATCCATGAGTGATAGCTaGGGTGTGGAAGGCTCCAAGGGGTTCTGCGCATGTGCCGCTCTC +
Preference number: 5 (lower is better)
Translates to: KGQLGVSHFISMSDS*GVEGSKGFCACAAL
Trigger: GAGAGCGGCACATGCGCAGAACCCCTTGGAGCCTTCCACACCCCAGCTATCACTCATGGATATAAAATGTGAGACACCCAACTGTCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CCTGTGGCACTCAGGGGTCTGGATCACAGTACCACTGTGAATGGCAGTTTGAGGGGTCTTCTGAGGATGTaGCTGAGGACAAATATGTGG +
Preference number: 5 (lower is better)
Translates to: PVALRGLDHSTTVNGSLRGLLRM*LRTNMW
Trigger: CCACATATTTGTCCTCAGCAACATCCTCAGAAGACC...CCTCAAACTGCCATTCACAGTGGTACTGTGATCCAGACCCCTGAGTGCCACAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CATCCCACCACACTCCATGGCCAGGGACTAACCAGGCCCCCAGGACATGGTGGAATGAAGAAAGGACAGTaGGGTGTCTCACATTTTATA +
Preference number: 5 (lower is better)
Translates to: HPTTLHGQGLTRPPGHGGMKKGQ*GVSHFI
Trigger: TATAAAATGTGAGACACCCAACTGTCCTTTCTTCAT...TCCACCATGTCCTGGGGGCCTGGTTAGTCCCTGGCCATGGAGTGTGGTGGGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp AAGCTATATTTCCCTCCTAAAGCAAGTCCAAAGCACACAGAAAAGCTGCAAGCACCTCGGGGCTCCAGTTaGAGGAGCCAAGTCCCACGC +
Preference number: 5 (lower is better)
Translates to: KLYFPPKASPKHTEKLQAPRGSS*RSQVPR
Trigger: GCGTGGGACTTGGCTCCTCAAACTGGAGCCCCGAGG...TGCTTGCAGCTTTTCTGTGTGCTTTGGACTTGCTTTAGGAGGGAAATATAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGGTCAGACTTGGAGCGTaGGTGACAGGAGGCAGGGAT +
Preference number: 5 (lower is better)
Translates to: LMVMAVTKEELILPTCSKVRLGA*VTGGRD
Trigger: ATCCCTGCCTCCTGTCACCAACGCTCCAAGTCTGAC...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp TTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGGCATGTCTTCCCCAGGCACGGGACATaGTTCTGGAACCTGGGGGCC +
Preference number: 5 (lower is better)
Translates to: FKVILFGMGDNGQHWHVFPRHGT*FWNLGA
Trigger: GGCCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGG...GAAGACATGCCAGTGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 90 bp CAGGGAATTGTACTGAAGTCCACTTCGGGCTGCAGGTGTGTCTGCTaGTGCCATTTTGACCAAGTTGTCCCATTCGTCATTCCAGTTCCG +
Preference number: 5 (lower is better)
Translates to: QGIVLKSTSGCRCVC*CHFDQVVPFVIPVP
Trigger: CGGAACTGGAATGACGAATGGGACAACTTGGTCAAAATGGCATCAGCAGACACACCTGCAGCCCGAAGTGGACTTCAGTACAATTCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp CAGGACCAGGTCAGTATCCTGAACACCCCACATGTACTGACAAGCTaGATGCATGAGGCAGTTTCCATCACCATTGGTTTTCAGAGCCAC +
Preference number: 5 (lower is better)
Translates to: QDQVSILNTPHVLTS*MHEAVSITIGFQSH
Trigger: GTGGCTCTGAAAACCAATGGTGATGGAAACTGCCTCATGCATGCAGCTTGTCAGTACATGTGGGGTGTTCAGGATACTGACCTGGTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 90 bp AGAGCCACGAGCTTCCTGACTTCACGACACCAGTTGAGCTTCTTCTaGCTTTCCAGGGAAGCCTGGACACTTCTGTCAATAAGTGCTTTG +
Preference number: 5 (lower is better)
Translates to: RATSFLTSRHQLSFF*LSREAWTLLSISAL
Trigger: CAAAGCACTTATTGACAGAAGTGTCCAGGCTTCCCTGGAAAGCCAGAAGAAGCTCAACTGGTGTCGTGAAGTCAGGAAGCTCGTGGCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
CDS CCA 90 bp CACTTTCCAGGGTCTGCGGTGTGGCTGGCATTAATCTGCCGGGCGTaGCAACGCTCACAGAATCCATTATGCTGCACATTCAAAGTAAAA +
Preference number: 5 (lower is better)
Translates to: HFPGSAVWLALICRA*QRSQNPLCCTFKVK
Trigger: TTTTACTTTGAATGTGCAGCATAATGGATTCTGTGAGCGTTGCCACGCCCGGCAGATTAATGCCAGCCACACCGCAGACCCTGGAAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp GATGGTTCCAGTCTCCATCCTACTTTCCCATACGCCTTTCTTCCTGTTGCCTGGCAGTTTCCATCACCATaGGTTTTCAGAGCCACGAGC +
Preference number: 5 (lower is better)
Translates to: DGSSLHPTFPYAFLPVAWQFPSP*VFRATS
Trigger: GCTCGTGGCTCTGAAAACCAATGGTGATGGAAACTG...CCAGGCAACAGGAAGAAAGGCGTATGGGAAAGTAGGATGGAGACTGGAACCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGCAGGCCAGAATGTTCTaGCAGGAGGCCCGGGCACAT +
Preference number: 5 (lower is better)
Translates to: TRPPGHGGKQICYLKKILQARMF*QEARAH
Trigger: ATGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCTG...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp GCATTAATCTGCCGGGCGTGGCAACGCTCACAGAATCCATTATGCTaGACATTCAAAGTAAAAGGGCACCCAGGACTCCTGCACTTCATT +
Preference number: 5 (lower is better)
Translates to: ALICRAWQRSQNPLC*TFKVKGHPGLLHFI
Trigger: AATGAAGTGCAGGAGTCCTGGGTGCCCTTTTACTTTGAATGTGCAGCATAATGGATTCTGTGAGCGTTGCCACGCCCGGCAGATTAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCGGTCTTCTGAGGATGTaGCTGAGGACAAATATGTGG +
Preference number: 5 (lower is better)
Translates to: LILPTCSKTLEATVPGPTGLLRM*LRTNMW
Trigger: CCACATATTTGTCCTCAGCAACATCCTCAGAAGACC...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 90 bp CTTCTTCTGGCTTTCCAGGGAAGCCTGGACACTTCTGTCAATAAGTaGTTTGTGGATGATCTCTCGGAACTGTGGGCAAAACTGGCATGT +
Preference number: 5 (lower is better)
Translates to: LLLAFQGSLDTSVNK*FVDDLSELWAKLAC
Trigger: ACATGCCAGTTTTGCCCACAGTTCCGAGAGATCATCCACAAAGCACTTATTGACAGAAGTGTCCAGGCTTCCCTGGAAAGCCAGAAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
ENSMUST00000146388.2
CDS CCA 90 bp TGGCTTTCCAGGGAAGCCTGGACACTTCTGTCAATAAGTGCTTTGTaGATGATCTCTCGGAACTGTGGGCAAAACTGGCATGTTCTGAAC +
Preference number: 5 (lower is better)
Translates to: WLSREAWTLLSISAL*MISRNCGQNWHVLN
Trigger: GTTCAGAACATGCCAGTTTTGCCCACAGTTCCGAGAGATCATCCACAAAGCACTTATTGACAGAAGTGTCCAGGCTTCCCTGGAAAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
ENSMUST00000146388.2
CDS-3UTR CAA 90 bp CTTCTTGTGCAGCCAGGGAGTCATAGGAAGCAGCCGATTCTACAGGCTTATCCACTGTCAATAAGTGCTTaGTGGATGATCTCTCGGAAC +
Preference number: 5 (lower is better)
Translates to: LLVQPGSHRKQPILQAYPLSISA*WMISRN
Trigger: GTTCCGAGAGATCATCCACAAAGCACTTATTGACAG...TGGATAAGCCTGTAGAATCGGCTGCTTCCTATGACTCCCTGGCTGCACAAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CAGAAACTTCCTCGTCCTCACGGCTATTGGCTTTGCTTTCTCAGTGTTCCTATCACTTCACGACACCAGTaGAGCTTCTTCTGGCTTTCC +
Preference number: 5 (lower is better)
Translates to: QKLPRPHGYWLCFLSVPITSRHQ*SFFWLS
Trigger: GGAAAGCCAGAAGAAGCTCAACTGGTGTCGTGAAGT...GATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTGAGGACGAGGAAGTTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 90 bp ATGTTGCTGAGGACAAATATGTGGATTTCTTCCAGGGAATTGTACTaGAGTCCACTTCGGGCTGCAGGTGTGTCTGCTGATGCCATTTTG +
Preference number: 5 (lower is better)
Translates to: MLLRTNMWISSRELY*SPLRAAGVSADAIL
Trigger: CAAAATGGCATCAGCAGACACACCTGCAGCCCGAAGTGGACTTCAGTACAATTCCCTGGAAGAAATCCACATATTTGTCCTCAGCAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 90 bp CTTCCGTTCTTCTTGCTTCATGGAATCTCTGGTTCTGAGCTTCGATaGAACACTTCTGACAGTACCCTTCAAACATGGTGCTTCCGAGTG +
Preference number: 5 (lower is better)
Translates to: LPFFLLHGISGSELR*NTSDSTLQTWCFRV
Trigger: CACTCGGAAGCACCATGTTTGAAGGGTACTGTCAGAAGTGTTTCATCGAAGCTCAGAACCAGAGATTCCATGAAGCAAGAAGAACGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CTGATGGTCATGGCTGTGACGAAGGAAGAGCTTATCTTGCCTACTTGCTCAAAGAGAGTGCAAAAGCCCTaGTTTTCTGGAGTCCCAAAA +
Preference number: 5 (lower is better)
Translates to: LMVMAVTKEELILPTCSKRVQKP*FSGVPK
Trigger: TTTTGGGACTCCAGAAAACAAGGGCTTTTGCACTCT...CTTTGAGCAAGTAGGCAAGATAAGCTCTTCCTTCGTCACAGCCATGACCATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CAGAAACTTCCTCGTCCTCACGGCTATTGGCTTTGCTTTCTCAGTGTTCCTATCATCCCATTGGTAGGTTaGAAAATGTCTTCTGGGGTT +
Preference number: 5 (lower is better)
Translates to: QKLPRPHGYWLCFLSVPIIPLVG*KMSSGV
Trigger: AACCCCAGAAGACATTTTCAAACCTACCAATGGGAT...GATAGGAACACTGAGAAAGCAAAGCCAATAGCCGTGAGGACGAGGAAGTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp CTTATCTTGCCTACTTGCTCAAAGACACTTGAAGCCACTGTCCCAGGGCCTACCATGAAGAAAGGACAGTaGGGTGTCTCACATTTTATA +
Preference number: 5 (lower is better)
Translates to: LILPTCSKTLEATVPGPTMKKGQ*GVSHFI
Trigger: TATAAAATGTGAGACACCCAACTGTCCTTTCTTCAT...GGTAGGCCCTGGGACAGTGGCTTCAAGTGTCTTTGAGCAAGTAGGCAAGATAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp TACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACATCTGCTGATGCCATTTaGACCAAGTTGTCCCATTCG +
Preference number: 5 (lower is better)
Translates to: YTPSVQSYSLWNGRQWPTSADAI*TKLSHS
Trigger: CGAATGGGACAACTTGGTCAAAATGGCATCAGCAGA...TGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp ACCAGGCCCCCAGGACATGGTGGAAAGCAAATATGTTATCTCAAGAAAATACTGAGAGTGCAAAAGCCCTaGTTTTCTGGAGTCCCAAAA +
Preference number: 5 (lower is better)
Translates to: TRPPGHGGKQICYLKKILRVQKP*FSGVPK
Trigger: TTTTGGGACTCCAGAAAACAAGGGCTTTTGCACTCT...CAGTATTTTCTTGAGATAACATATTTGCTTTCCACCATGTCCTGGGGGCCTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS-3UTR CAA 90 bp TACACACCCTCAGTTCAAAGTTATTCTCTTTGGAATGGGAGACAATGGCCAACACTGTCAATAAGTGCTTaGTGGATGATCTCTCGGAAC +
Preference number: 5 (lower is better)
Translates to: YTPSVQSYSLWNGRQWPTLSISA*WMISRN
Trigger: GTTCCGAGAGATCATCCACAAAGCACTTATTGACAG...TGTTGGCCATTGTCTCCCATTCCAAAGAGAATAACTTTGAACTGAGGGTGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 72 bp CCGAGTGTGCCGCACTCCCTGCCCAGGCACGGGACATaGTTCTGGAACCTGGGGGCCGGGGAACCAGCTTTC +
Preference number: 6 (lower is better)
Translates to: PSVPHSLPRHGT*FWNLGAGEPAF
Trigger: GAAAGCTGGTTCCCCGGCCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGGCAGGGAGTGCGGCACACTCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 72 bp GTGCCGCACTCCCTGCCCAGGCACGGGACATTGTTCTaGAACCTGGGGGCCGGGGAACCAGCTTTCTCAGAG +
Preference number: 6 (lower is better)
Translates to: VPHSLPRHGTLF*NLGAGEPAFSE
Trigger: CTCTGAGAAAGCTGGTTCCCCGGCCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGGCAGGGAGTGCGGCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 72 bp CTGGGGTGTGGAAGGCTCCAAGGGGTTCTGCGCATGTaGCGCTCTCCTGGCCTGATCGCTGTTCTCCTGCCA +
Preference number: 6 (lower is better)
Translates to: LGCGRLQGVLRM*RSPGLIAVLLP
Trigger: TGGCAGGAGAACAGCGATCAGGCCAGGAGAGCGGCACATGCGCAGAACCCCTTGGAGCCTTCCACACCCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 90 bp ATGGTGCTTCCGAGTGTGCCGCACTCCCTGCCCAGGCACGGGACATaGTTCTGGAACCTGGGGGCCGGGGAACCAGCTTTCTCAGAGGCA +
Preference number: 6 (lower is better)
Translates to: MVLPSVPHSLPRHGT*FWNLGAGEPAFSEA
Trigger: TGCCTCTGAGAAAGCTGGTTCCCCGGCCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGGCAGGGAGTGCGGCACACTCGGAAGCACCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 72 bp TGTTTAGGGGGCTCTTCAGGCGTGGGCTCACCCCGGTaGGCCACAGAACCTACTCGTTGGCTTAGGTGCTGG +
Preference number: 6 (lower is better)
Translates to: CLGGSSGVGSPR*ATEPTRWLRCW
Trigger: CCAGCACCTAAGCCAACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCCCACGCCTGAAGAGCCCCCTAAACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 72 bp GACATCCTGAAGGCAGGCTTGGCACTTTCCAGGGTCTaGGGTGTGGCTGGCATTAATCTGCCGGGCGTGGCA +
Preference number: 6 (lower is better)
Translates to: DILKAGLALSRV*GVAGINLPGVA
Trigger: TGCCACGCCCGGCAGATTAATGCCAGCCACACCGCAGACCCTGGAAAGTGCCAAGCCTGCCTTCAGGATGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 72 bp CTTCAAACATGGTGCTTCCGAGTGTGCCGCACTCCCTaGCCAGGCACGGGACATTGTTCTGGAACCTGGGGG +
Preference number: 6 (lower is better)
Translates to: LQTWCFRVCRTP*PGTGHCSGTWG
Trigger: CCCCCAGGTTCCAGAACAATGTCCCGTGCCTGGGCAGGGAGTGCGGCACACTCGGAAGCACCATGTTTGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 72 bp AATGAGGTCCTCCAGCGGTTTCCTCGGGGCTCCAGTTaGAGGAGCCAAGTCCCACGCCTGGGAGTCCTTCAG +
Preference number: 6 (lower is better)
Translates to: NEVLQRFPRGSS*RSQVPRLGVLQ
Trigger: CTGAAGGACTCCCAGGCGTGGGACTTGGCTCCTCAAACTGGAGCCCCGAGGAAACCGCTGGAGGACCTCATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 72 bp GGCTTAGGTGCTGGCACTCCATACAGAGTTCCTCACTaGGACAGGCCAGAATGTTCTTGCAGGAGGCCCGGG +
Preference number: 6 (lower is better)
Translates to: GLGAGTPYRVPH*DRPECSCRRPG
Trigger: CCCGGGCCTCCTGCAAGAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTATGGAGTGCCAGCACCTAAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 72 bp CCCCGGTGGGCCACAGAACCTACTCGTTGGCTTAGGTaGTGGCACTCCATACAGAGTTCCTCACTGCGACAG +
Preference number: 6 (lower is better)
Translates to: PRWATEPTRWLR*WHSIQSSSLRQ
Trigger: CTGTCGCAGTGAGGAACTCTGTATGGAGTGCCAGCACCTAAGCCAACGAGTAGGTTCTGTGGCCCACCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 72 bp GTGGGCTCACCCCGGTGGGCCACAGAACCTACTCGTTaGCTTAGGTGCTGGCACTCCATACAGAGTTCCTCA +
Preference number: 6 (lower is better)
Translates to: VGSPRWATEPTR*LRCWHSIQSSS
Trigger: TGAGGAACTCTGTATGGAGTGCCAGCACCTAAGCCAACGAGTAGGTTCTGTGGCCCACCGGGGTGAGCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 72 bp TCCAAGGGGTTCTGCGCATGTGCCGCTCTCCTGGCCTaGTCGCTGTTCTCCTGCCATTTCTTGTATTCGTGC +
Preference number: 6 (lower is better)
Translates to: SKGFCACAALLA*SLFSCHFLYSC
Trigger: GCACGAATACAAGAAATGGCAGGAGAACAGCGATCAGGCCAGGAGAGCGGCACATGCGCAGAACCCCTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 72 bp TCTGACAGTACCCTTCAAACATGGTGCTTCCGAGTGTaGCGCACTCCCTGCCCAGGCACGGGACATTGTTCT +
Preference number: 6 (lower is better)
Translates to: SDSTLQTWCFRV*RTPCPGTGHCS
Trigger: AGAACAATGTCCCGTGCCTGGGCAGGGAGTGCGGCACACTCGGAAGCACCATGTTTGAAGGGTACTGTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 72 bp GGGTCTGCGGTGTGGCTGGCATTAATCTGCCGGGCGTaGCAACGCTCACAGAATCCATTATGCTGCACATTC +
Preference number: 6 (lower is better)
Translates to: GSAVWLALICRA*QRSQNPLCCTF
Trigger: GAATGTGCAGCATAATGGATTCTGTGAGCGTTGCCACGCCCGGCAGATTAATGCCAGCCACACCGCAGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 90 bp TGGCACTCCATACAGAGTTCCTCACTGCGACAGGCCAGAATGTTCTaGCAGGAGGCCCGGGCACATTTCAGCCTTGAGGCTACCTGTGTA +
Preference number: 6 (lower is better)
Translates to: WHSIQSSSLRQARMF*QEARAHFSLEATCV
Trigger: TACACAGGTAGCCTCAAGGCTGAAATGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTATGGAGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 72 bp TACAGAGTTCCTCACTGCGACAGGCCAGAATGTTCTTaGAGGAGGCCCGGGCACATTTCAGCCTTGAGGCTA +
Preference number: 6 (lower is better)
Translates to: YRVPHCDRPECS*RRPGHISALRL
Trigger: TAGCCTCAAGGCTGAAATGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 72 bp AAGGCTCCAAGGGGTTCTGCGCATGTGCCGCTCTCCTaGCCTGATCGCTGTTCTCCTGCCATTTCTTGTATT +
Preference number: 6 (lower is better)
Translates to: KAPRGSAHVPLS*PDRCSPAISCI
Trigger: AATACAAGAAATGGCAGGAGAACAGCGATCAGGCCAGGAGAGCGGCACATGCGCAGAACCCCTTGGAGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 72 bp ATACAGAGTTCCTCACTGCGACAGGCCAGAATGTTCTaGCAGGAGGCCCGGGCACATTTCAGCCTTGAGGCT +
Preference number: 6 (lower is better)
Translates to: IQSSSLRQARMF*QEARAHFSLEA
Trigger: AGCCTCAAGGCTGAAATGTGCCCGGGCCTCCTGCAAGAACATTCTGGCCTGTCGCAGTGAGGAACTCTGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 90 bp TTGTTTTCTGGAGTCCCAAAATACATGCAGCCAGCTTTCCTGCACTaGCTTGTCCCTGCTCTGTCTCCTGGAGTCCGTGCAGCCTGGGAG +
Preference number: 6 (lower is better)
Translates to: LFSGVPKYMQPAFLH*LVPALSPGVRAAWE
Trigger: CTCCCAGGCTGCACGGACTCCAGGAGACAGAGCAGGGACAAGCAAGTGCAGGAAAGCTGGCTGCATGTATTTTGGGACTCCAGAAAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 72 bp TTTCCAGTCCGGTGGCAAGAGTGTGGAGTGAGACTTTaGATGAGTTGTGAGGGGTCAGACTTGGAGCGTTGG +
Preference number: 6 (lower is better)
Translates to: FPVRWQECGVRL*MSCEGSDLERW
Trigger: CCAACGCTCCAAGTCTGACCCCTCACAACTCATCCAAAGTCTCACTCCACACTCTTGCCACCGGACTGGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 72 bp TTCAGAGCCACGAGCTTCCTGACTTCACGACACCAGTaGAGCTTCTTCTGGCTTTCCAGGGAAGCCTGGACA +
Preference number: 6 (lower is better)
Translates to: FRATSFLTSRHQ*SFFWLSREAWT
Trigger: TGTCCAGGCTTCCCTGGAAAGCCAGAAGAAGCTCAACTGGTGTCGTGAAGTCAGGAAGCTCGTGGCTCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
CDS CAA 72 bp AGCGTTGATCAGGTGAGTCGTGCCGTGGTCCCAGCCTaGCACAGGGATCTCCATCACTATCAAGTACTCCTT +
Preference number: 6 (lower is better)
Translates to: SVDQVSRAVVPA*HRDLHHYQVLL
Trigger: AAGGAGTACTTGATAGTGATGGAGATCCCTGTGCAAGGCTGGGACCACGGCACGACTCACCTGATCAACGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 72 bp AAGTTAGCTTCATCCAATTTTGCAGCGTTGATCAGGTaGGTCGTGCCGTGGTCCCAGCCTTGCACAGGGATC +
Preference number: 6 (lower is better)
Translates to: KLASSNFAALIR*VVPWSQPCTGI
Trigger: GATCCCTGTGCAAGGCTGGGACCACGGCACGACTCACCTGATCAACGCTGCAAAATTGGATGAAGCTAACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 72 bp GAGAGGCAGCCAGAAGGAGAGACATTTCCAGTCCGGTaGCAAGAGTGTGGAGTGAGACTTTGGATGAGTTGT +
Preference number: 6 (lower is better)
Translates to: ERQPEGETFPVR*QECGVRLWMSC
Trigger: ACAACTCATCCAAAGTCTCACTCCACACTCTTGCCACCGGACTGGAAATGTCTCTCCTTCTGGCTGCCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 90 bp GGGATACTGGAAGTGAGGCTGGAGCTGGGCTCTGCTGTAGTCCTTTaGAAACAGGTACTGCAGATGCCATTAAAGGTCCGAGTGACATCC +
Preference number: 6 (lower is better)
Translates to: GILEVRLELGSAVVL*KQVLQMPLKVRVTS
Trigger: GGATGTCACTCGGACCTTTAATGGCATCTGCAGTACCTGTTTCAAAAGGACTACAGCAGAGCCCAGCTCCAGCCTCACTTCCAGTATCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS GCA 72 bp CAAAGTAAAAGGGCACCCAGGACTCCTGCACTTCATTaGAGTGGTCTCACTGAAGAGAAAAAGGCTGGGTGC +
Preference number: 6 (lower is better)
Translates to: QSKRAPRTPALH*SGLTEEKKAGC
Trigger: GCACCCAGCCTTTTTCTCTTCAGTGAGACCACTGCAATGAAGTGCAGGAGTCCTGGGTGCCCTTTTACTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 72 bp CCTGAACACCCCACATGTACTGACAAGCTGCATGCATaGGGCAGTTTCCATCACCATTGGTTTTCAGAGCCA +
Preference number: 6 (lower is better)
Translates to: PEHPTCTDKLHA*GSFHHHWFSEP
Trigger: TGGCTCTGAAAACCAATGGTGATGGAAACTGCCTCATGCATGCAGCTTGTCAGTACATGTGGGGTGTTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
CDS TCA 72 bp TTTTGGCGCCTCTCTGAGCATTCGTGGCATAAAGGCTaGGTGTTCACGGACATGAAGAAAGGACAGTTGGGT +
Preference number: 6 (lower is better)
Translates to: FWRLSEHSWHKG*VFTDMKKGQLG
Trigger: ACCCAACTGTCCTTTCTTCATGTCCGTGAACACTCAGCCTTTATGCCACGAATGCTCAGAGAGGCGCCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 72 bp TCCAGGGAAGCCTGGACACTTCTGTCAATAAGTGCTTaGTGGATGATCTCTCGGAACTGTGGGCAAAACTGG +
Preference number: 6 (lower is better)
Translates to: SREAWTLLSISA*WMISRNCGQNW
Trigger: CCAGTTTTGCCCACAGTTCCGAGAGATCATCCACAAAGCACTTATTGACAGAAGTGTCCAGGCTTCCCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
ENSMUST00000146388.2
CDS CAA 90 bp TTCTGGCTTTCCAGGGAAGCCTGGACACTTCTGTCAATAAGTGCTTaGTGGATGATCTCTCGGAACTGTGGGCAAAACTGGCATGTTCTG +
Preference number: 6 (lower is better)
Translates to: FWLSREAWTLLSISA*WMISRNCGQNWHVL
Trigger: CAGAACATGCCAGTTTTGCCCACAGTTCCGAGAGATCATCCACAAAGCACTTATTGACAGAAGTGTCCAGGCTTCCCTGGAAAGCCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
ENSMUST00000146388.2
CDS GCA 72 bp GCTTTCCAGGGAAGCCTGGACACTTCTGTCAATAAGTaGTTTGTGGATGATCTCTCGGAACTGTGGGCAAAA +
Preference number: 6 (lower is better)
Translates to: AFQGSLDTSVNK*FVDDLSELWAK
Trigger: TTTTGCCCACAGTTCCGAGAGATCATCCACAAAGCACTTATTGACAGAAGTGTCCAGGCTTCCCTGGAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
ENSMUST00000146388.2
CDS CCA 72 bp AGGGAAGCCTGGACACTTCTGTCAATAAGTGCTTTGTaGATGATCTCTCGGAACTGTGGGCAAAACTGGCAT +
Preference number: 6 (lower is better)
Translates to: REAWTLLSISAL*MISRNCGQNWH
Trigger: ATGCCAGTTTTGCCCACAGTTCCGAGAGATCATCCACAAAGCACTTATTGACAGAAGTGTCCAGGCTTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
ENSMUST00000146388.2
CDS GCA 72 bp GTCAGTATCCTGAACACCCCACATGTACTGACAAGCTaGATGCATGAGGCAGTTTCCATCACCATTGGTTTT +
Preference number: 6 (lower is better)
Translates to: VSILNTPHVLTS*MHEAVSITIGF
Trigger: AAAACCAATGGTGATGGAAACTGCCTCATGCATGCAGCTTGTCAGTACATGTGGGGTGTTCAGGATACTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
ENSMUST00000122863.2
CDS TCA 72 bp TTCTTGCTTCATGGAATCTCTGGTTCTGAGCTTCGATaGAACACTTCTGACAGTACCCTTCAAACATGGTGC +
Preference number: 6 (lower is better)
Translates to: FLLHGISGSELR*NTSDSTLQTWC
Trigger: GCACCATGTTTGAAGGGTACTGTCAGAAGTGTTTCATCGAAGCTCAGAACCAGAGATTCCATGAAGCAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS TCA 72 bp AGCATTCGTGGCATAAAGGCTGAGTGTTCACGGACATaGAGAAAGGACAGTTGGGTGTCTCACATTTTATAT +
Preference number: 6 (lower is better)
Translates to: SIRGIKAECSRT*RKDSWVSHILY
Trigger: ATATAAAATGTGAGACACCCAACTGTCCTTTCTTCATGTCCGTGAACACTCAGCCTTTATGCCACGAATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CAA 72 bp TTGTCTGAAATGACAATGATGGGTCTTCTGAGGATGTaGCTGAGGACAAATATGTGGATTTCTTCCAGGGAA +
Preference number: 6 (lower is better)
Translates to: LSEMTMMGLLRM*LRTNMWISSRE
Trigger: TTCCCTGGAAGAAATCCACATATTTGTCCTCAGCAACATCCTCAGAAGACCCATCATTGTCATTTCAGACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2
CDS CCA 72 bp GCAGATAAATCCCACCCACTTTCAAAGGAGCAAAATTaGAACCAGATTCCAAACTTCTTAGCATTTTGTCTG +
Preference number: 6 (lower is better)
Translates to: ADKSHPLSKEQN*NQIPNFLAFCL
Trigger: CAGACAAAATGCTAAGAAGTTTGGAATCTGGTTCCAATTTTGCTCCTTTGAAAGTGGGTGGGATTTATCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019997.11
ENSMUST00000105527.2