Pregenerated sensors for TNF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024401Ensembl transcript IDs: ENSMUST00000025263.15, ENSMUST00000167924.2
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTTCCTTCGGAAAGCCCATTTaGGTCCTTGATGGTGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: VCLKTASHTGSSRTPRPSFGKPI*VLDGGA Trigger: TGCACCACCATCAAGGACTCAAATGGGCTTTCCGAA...GGAAGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR TCA 90 bp | TTATTTCTCTCAATGACCCGTAGGGCGATTACAGTCACGGCTCCCGTGGGGAGCCTTGATGGTGGTGCATaGGAGGCCCACAGTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: LFLSMTRRAITVTAPVGSLDGGA*EAHSPG Trigger: ACCTGGACTGTGGGCCTCTCATGCACCACCATCAAG...GCTCCCCACGGGAGCCGTGACTGTAATCGCCCTACGGGTCATTGAGAGAAATAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| 3UTR-3UTR TCA 90 bp | AACCTGACCACTCTCCCTTTGCAGAACTCAGGAATGGACATTCGAGGCTCCAGTCTTGATGGTGGTGCATaGGAGGCCCACAGTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: NLTTLPLQNSGMDIRGSSLDGGA*EAHSPG Trigger: ACCTGGACTGTGGGCCTCTCATGCACCACCATCAAG...ACTGGAGCCTCGAATGTCCATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR TCA 90 bp | CAACCTGACCACTCTCCCTTTGCAGAACTCAGGAATGGACATTCGAGGCTCCAGGCCCATTTGAGTCCTTaGTGGTGGTGCATGAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: QPDHSPFAELRNGHSRLQAHLSP*WWCMRG Trigger: GCCTCTCATGCACCACCATCAAGGACTCAAATGGGC...CTGGAGCCTCGAATGTCCATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAGGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR TCA 90 bp | TTATTTCTCTCAATGACCCGTAGGGCGATTACAGTCACGGCTCCCGTGGGGAGCTATCCAGCCTCATTCTaGGACAGAGGCAACCTGACC | + |
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Preference number: 2 (lower is better) Translates to: LFLSMTRRAITVTAPVGSYPASF*DRGNLT Trigger: GGTCAGGTTGCCTCTGTCTCAGAATGAGGCTGGATA...GCTCCCCACGGGAGCCGTGACTGTAATCGCCCTACGGGTCATTGAGAGAAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| 3UTR-3UTR TCA 90 bp | CATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTAGCATCTTGTGTTTCTaGGTAGTTGTTGAAAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: HVCLKTASHTGSSRTPRPSILCF*VVVESS Trigger: AGAGCTTTCAACAACTACTCAGAAACACAAGATGCT...AGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGCTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGGAGACAGAGGCAACCTaGCCACTCTCCCTTTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: KAVHCTSGKNLERSEGRKETEAT*PLSLCR Trigger: TCTGCAAAGGGAGAGTGGTCAGGTTGCCTCTGTCTC...CTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAGCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR TCA 90 bp | GACAGCTCAGCTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCAGAGACAGAGGCAACCTaGCCACTCTCCCTTTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: DSSAPFSQKTCLSEDSFPETEAT*PLSLCR Trigger: TCTGCAAAGGGAGAGTGGTCAGGTTGCCTCTGTCTC...TGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAGCTGAGCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR CCA 90 bp | AGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCCTCAGGGAAGAATCTaGAAAGGTCTGAAGGTAGGA | + |
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Preference number: 2 (lower is better) Translates to: RKHVCLKTASHTGSSRTPPQGRI*KGLKVG Trigger: TCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGG...GGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR TCA 90 bp | TCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTTCCAAATAAGCATCTTGTGTTTCTaGGTAGTTGTTGAAAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: SEDSFPHWVLQDTPAFQISILCF*VVVESS Trigger: AGAGCTTTCAACAACTACTCAGAAACACAAGATGCT...TATTTGGAAGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGCTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGTTCGGAAAGCCCATTTaGGTCCTTGATGGTGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: KAVHCTSGKNLERSEGRKFGKPI*VLDGGA Trigger: TGCACCACCATCAAGGACTCAAATGGGCTTTCCGAA...CTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGCCTCAGGGAAGAATCTaGAAAGGTCTGAAGGTAGGA | + |
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Preference number: 2 (lower is better) Translates to: FHRKHVCLKTASHTGSSRPQGRI*KGLKVG Trigger: TCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGG...CCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR TCA 72 bp | TTACAGTCACGGCTCCCGTGGGGAGCAGAGGTTCAGTaGTGTAGCGACAGCCTGGTCACCAAATCAGCGTTA | + |
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Preference number: 3 (lower is better) Translates to: LQSRLPWGAEVQ*CSDSLVTKSAL Trigger: TAACGCTGATTTGGTGACCAGGCTGTCGCTACATCACTGAACCTCTGCTCCCCACGGGAGCCGTGACTGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| 3UTR CCA 72 bp | CAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTaGGTCCTCCAGGACACCCCGGCCTTCCAAATAAAT | + |
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Preference number: 3 (lower is better) Translates to: QKTCLSEDSFPH*VLQDTPAFQIN Trigger: ATTTATTTGGAAGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR CAA 90 bp | ATCTGGAAAGGTCTGAAGGTAGGAAGGCCTGAGATCTTATCCAGCCTCATTCTGCTGACCACTCTCCCTTaGCAGAACTCAGGAATGGAC | + |
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Preference number: 3 (lower is better) Translates to: IWKGLKVGRPEILSSLILLTTLP*QNSGMD Trigger: GTCCATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAG...CAGAATGAGGCTGGATAAGATCTCAGGCCTTCCTACCTTCAGACCTTTCCAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR-3UTR CAA 90 bp | GACAGCTCAGCTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACTGACCACTCTCCCTTaGCAGAACTCAGGAATGGAC | + |
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Preference number: 3 (lower is better) Translates to: DSSAPFSQKTCLSEDSFPLTTLP*QNSGMD Trigger: GTCCATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAG...TGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAGCTGAGCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR TCA 72 bp | GATCTTATCCAGCCTCATTCTGAGACAGAGGCAACCTaGCCACTCTCCCTTTGCAGAACTCAGGAATGGACA | + |
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Preference number: 3 (lower is better) Translates to: DLIQPHSETEAT*PLSLCRTQEWT Trigger: TGTCCATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAGGTTGCCTCTGTCTCAGAATGAGGCTGGATAAGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| 3UTR TCA 72 bp | CACAGTCCAGGTCACTGTCCCAGCATCTTGTGTTTCTaGGTAGTTGTTGAAAGCTCTGAGCACAGAGTTGGA | + |
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Preference number: 3 (lower is better) Translates to: HSPGHCPSILCF*VVVESSEHRVG Trigger: TCCAACTCTGTGCTCAGAGCTTTCAACAACTACTCAGAAACACAAGATGCTGGGACAGTGACCTGGACTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR TCA 90 bp | GTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTTCCGGAATGAGAAGAGGCTaGGACATAGGCACCGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: VCLKTASHTGSSRTPRPSGMRRG*DIGTAW Trigger: CCAGGCGGTGCCTATGTCTCAGCCTCTTCTCATTCC...GGAAGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | CTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGGCCTAGGGCGTTGGCGCGCTaGCTCAGCCACTCCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LCIAPQGRIWKGLKVGRPRALAR*LSHSSC Trigger: GCAGCTGGAGTGGCTGAGCCAGCGCGCCAACGCCCT...AGGCCTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | CTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGGCCTTGGCCAGGAGGGCGTTaGCGCGCTGGCTCAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: LCIAPQGRIWKGLKVGRPWPGGR*RAGSAT Trigger: AGTGGCTGAGCCAGCGCGCCAACGCCCTCCTGGCCA...AGGCCTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR GCA 90 bp | CATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTCATCTTTTGGGGGAGTaGCTCTTCTGCCAGTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: HVCLKTASHTGSSRTPRPHLLGE*LFCQFH Trigger: GTGGAACTGGCAGAAGAGGCACTCCCCCAAAAGATG...AGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | CTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCAGGGCGTTGGCGCGCTaGCTCAGCCACTCCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LRFHRKHVCLKTASHTGSRALAR*LSHSSC Trigger: GCAGCTGGAGTGGCTGAGCCAGCGCGCCAACGCCCT...GGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | GACAGCTCAGCTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCATGGCCAGGAGGGCGTTaGCGCGCTGGCTCAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: DSSAPFSQKTCLSEDSFPWPGGR*RAGSAT Trigger: AGTGGCTGAGCCAGCGCGCCAACGCCCTCCTGGCCA...TGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAGCTGAGCTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR TCA 90 bp | CTCATTCTGAGACAGAGGCAACCTGACCACTCTCCCTTTGCAGAACTCAGGAATGCTCATACCAGGGTTTaGGCTCAGCCCCCTCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: LILRQRQPDHSPFAELRNAHTRV*AQPPQG Trigger: CCCCTGAGGGGGCTGAGCTCAAACCCTGGTATGAGC...ATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAGGTTGCCTCTGTCTCAGAATGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR TCA 90 bp | TTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGGCTCATACCAGGGTTTaGGCTCAGCCCCCTCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: FHRKHVCLKTASHTGSSRAHTRV*AQPPQG Trigger: CCCCTGAGGGGGCTGAGCTCAAACCCTGGTATGAGC...CCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | CTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGGCCTGACAGAAGAGCGTGGTaGCCCCTGCCACAAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LCIAPQGRIWKGLKVGRPDRRAW*PLPQAG Trigger: TCCTGCTTGTGGCAGGGGCCACCACGCTCTTCTGTC...AGGCCTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | TTATTTCTCTCAATGACCCGTAGGGCGATTACAGTCACGGCTCCCGTGGGGAGCTCCCCCTTCTCCAGCTaGAAGACTCCTCCCAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: LFLSMTRRAITVTAPVGSSPFSS*KTPPRY Trigger: ATACCTGGGAGGAGTCTTCCAGCTGGAGAAGGGGGA...GCTCCCCACGGGAGCCGTGACTGTAATCGCCCTACGGGTCATTGAGAGAAATAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS-3UTR TCA 90 bp | CTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGGCCTGGAATGAGAAGAGGCTaGGACATAGGCACCGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LCIAPQGRIWKGLKVGRPGMRRG*DIGTAW Trigger: CCAGGCGGTGCCTATGTCTCAGCCTCTTCTCATTCC...AGGCCTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR GCA 90 bp | TTATTTCTCTCAATGACCCGTAGGGCGATTACAGTCACGGCTCCCGTGGGGAGCCATCTTTTGGGGGAGTaGCTCTTCTGCCAGTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LFLSMTRRAITVTAPVGSHLLGE*LFCQFH Trigger: GTGGAACTGGCAGAAGAGGCACTCCCCCAAAAGATG...GCTCCCCACGGGAGCCGTGACTGTAATCGCCCTACGGGTCATTGAGAGAAATAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS-3UTR CCA 90 bp | CTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGGCCTGTAGACAGAAGAGCGTaGTGGCCCCTGCCACAAGCA | + |
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Preference number: 4 (lower is better) Translates to: LCIAPQGRIWKGLKVGRPVDRRA*WPLPQA Trigger: TGCTTGTGGCAGGGGCCACCACGCTCTTCTGTCTAC...AGGCCTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | CCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCACCTCAGCGCTGAGTTaGTCCCCCTTCTCCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PFSQKTCLSEDSFPHWVLTSALS*SPFSSW Trigger: CCAGCTGGAGAAGGGGGACCAACTCAGCGCTGAGGT...GAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR TCA 90 bp | GTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTTCCTTGTCACTCGAATTTTaGGAAGATGATCTGAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: VCLKTASHTGSSRTPRPSLSLEF*EDDLSV Trigger: CACACTCAGATCATCTTCTCAAAATTCGAGTGACAA...GGAAGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS-3UTR CCA 90 bp | ATCTGGAAAGGTCTGAAGGTAGGAAGGCCTGAGATCTTATCCAGCCTCATTCTGGACAGAAGAGCGTGGTaGCCCCTGCCACAAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: IWKGLKVGRPEILSSLILDRRAW*PLPQAG Trigger: TCCTGCTTGTGGCAGGGGCCACCACGCTCTTCTGTC...CAGAATGAGGCTGGATAAGATCTCAGGCCTTCCTACCTTCAGACCTTTCCAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | TTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGGTAGACAGAAGAGCGTaGTGGCCCCTGCCACAAGCA | + |
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Preference number: 4 (lower is better) Translates to: FHRKHVCLKTASHTGSSRVDRRA*WPLPQA Trigger: TGCTTGTGGCAGGGGCCACCACGCTCTTCTGTCTAC...CCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | GACAGCTCAGCTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCAACCTCAGCGCTGAGTTaGTCCCCCTTCTCCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: DSSAPFSQKTCLSEDSFPTSALS*SPFSSW Trigger: CCAGCTGGAGAAGGGGGACCAACTCAGCGCTGAGGT...TGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAGCTGAGCTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | AGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCGAGAGGGAGGCCATTTaGGAACTTCTCATCCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: RKHVCLKTASHTGSSRTPEREAI*ELLIPL Trigger: CAAAGGGATGAGAAGTTCCCAAATGGCCTCCCTCTC...GGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | CTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGGCCTTGGTTTGCTACGACGTaGGCTACAGGCTTGTCACTC | + |
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Preference number: 4 (lower is better) Translates to: LCIAPQGRIWKGLKVGRPWFATT*ATGLSL Trigger: GAGTGACAAGCCTGTAGCCCACGTCGTAGCAAACCA...AGGCCTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS-3UTR CCA 90 bp | CCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCTCCCCCTTCTCCAGCTaGAAGACTCCTCCCAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: PFSQKTCLSEDSFPHWVLSPFSS*KTPPRY Trigger: ATACCTGGGAGGAGTCTTCCAGCTGGAGAAGGGGGA...GAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR TCA 90 bp | TTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGCGGCAGAGAGGAGGTTaGCTTTCTCCTGGTATGAGA | + |
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Preference number: 4 (lower is better) Translates to: FHRKHVCLKTASHTGSSRRQRGG*LSPGMR Trigger: TCTCATACCAGGAGAAAGTCAACCTCCTCTCTGCCG...CCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | TTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGAACTTCTCATCCCTTTaGGGACCGATCACCCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: FHRKHVCLKTASHTGSSRNFSSL*GPITPK Trigger: CTTCGGGGTGATCGGTCCCCAAAGGGATGAGAAGTT...CCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | GACAGCTCAGCTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCAAGCTGCTCCTCCACTTaGTGGTTTGCTACGACGTGG | + |
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Preference number: 4 (lower is better) Translates to: DSSAPFSQKTCLSEDSFPSCSST*WFATTW Trigger: CCACGTCGTAGCAAACCACCAAGTGGAGGAGCAGCT...TGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAGCTGAGCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS-3UTR CCA 90 bp | AGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCGCTGGCACCACTAGTTaGTTGTCTTTGAGATCCATG | + |
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Preference number: 4 (lower is better) Translates to: RKHVCLKTASHTGSSRTPAGTTS*LSLRSM Trigger: CATGGATCTCAAAGACAACCAACTAGTGGTGCCAGC...GGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | CTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTGCTCCTCCACTTGGTaGTTTGTGAGTGTGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: LRFHRKHVCLKTASHTGSCSSTW*FVSVRV Trigger: GACCCTCACACTCACAAACCACCAAGTGGAGGAGCA...GGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | CTCATTCTGAGACAGAGGCAACCTGACCACTCTCCCTTTGCAGAACTCAGGAATGAGAGGGAGGCCATTTaGGAACTTCTCATCCCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LILRQRQPDHSPFAELRNEREAI*ELLIPL Trigger: CAAAGGGATGAGAAGTTCCCAAATGGCCTCCCTCTC...ATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAGGTTGCCTCTGTCTCAGAATGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CCA 90 bp | GGAAGGCTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAGCTGGCACCACTAGTTaGTTGTCTTTGAGATCCATG | + |
|
Preference number: 4 (lower is better) Translates to: GRLCIAPQGRIWKGLKVGAGTTS*LSLRSM Trigger: CATGGATCTCAAAGACAACCAACTAGTGGTGCCAGC...TCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAGCCTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR TCA 90 bp | AAGGCTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGCGAATTTTGAGAAGATaGTCTGAGTGTGAGGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: KAVHCTSGKNLERSEGRKRILRR*SECEGL Trigger: CAGACCCTCACACTCAGATCATCTTCTCAAAATTCG...CTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAGCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS-3UTR CAA 90 bp | GTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTTCCGACCTCAGCGCTGAGTaGGTCCCCCTTCTCCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: VCLKTASHTGSSRTPRPSDLSAE*VPLLQL Trigger: CAGCTGGAGAAGGGGGACCAACTCAGCGCTGAGGTC...GGAAGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | CATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTGGCTCATACCAGGGTTaGAGCTCAGCCCCCTCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: HVCLKTASHTGSSRTPRPGSYQG*SSAPSG Trigger: CCCTGAGGGGGCTGAGCTCAAACCCTGGTATGAGCC...AGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS CCA 90 bp | AGGGCGTTGGCGCGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTTaGTGGTTTGCTACGACGTGGGCTACAGGCTTGTCACTCGAATTT | + |
|
Preference number: 5 (lower is better) Translates to: RALARWLSHSSCSST*WFATTWATGLSLEF Trigger: AAATTCGAGTGACAAGCCTGTAGCCCACGTCGTAGCAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGCCAACGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS CCA 90 bp | AGGGCGTTGGCGCGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTTaGTGGTTTGTGAGTGTGAGGGTCTGGGCCATAGAACTGATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: RALARWLSHSSCSST*WFVSVRVWAIELMR Trigger: TCTCATCAGTTCTATGGCCCAGACCCTCACACTCACAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGCCAACGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | AACCTGACCACTCTCCCTTTGCAGAACTCAGGAATGGACATTCGAGGCTCCAGTTTGGCCAGGAGGGCGTaGGCGCGCTGGCTCAGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: NLTTLPLQNSGMDIRGSSLARRA*ARWLSH Trigger: GTGGCTGAGCCAGCGCGCCAACGCCCTCCTGGCCAA...ACTGGAGCCTCGAATGTCCATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAGGTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS TCA 90 bp | AGACAAGGTACAACCCATCGGCTGGCACCACTAGTTGGTTGTCTTTaGGATCCATGCCGTTGGCCAGGAGGGCGTTGGCGCGCTGGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: RQGTTHRLAPLVGCL*DPCRWPGGRWRAGS Trigger: TGAGCCAGCGCGCCAACGCCCTCCTGGCCAACGGCATGGATCTCAAAGACAACCAACTAGTGGTGCCAGCCGATGGGTTGTACCTTGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | CTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTTGGCCAGGAGGGCGTaGGCGCGCTGGCTCAGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: LRFHRKHVCLKTASHTGSLARRA*ARWLSH Trigger: GTGGCTGAGCCAGCGCGCCAACGCCCTCCTGGCCAA...GGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS-3UTR CAA 90 bp | AGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCTTGAGATCCATGCCGTaGGCCAGGAGGGCGTTGGCG | + |
|
Preference number: 5 (lower is better) Translates to: RKHVCLKTASHTGSSRTPLRSMP*ARRALA Trigger: CGCCAACGCCCTCCTGGCCAACGGCATGGATCTCAA...GGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | GTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTTCCGCAAAGTCTAAGTACTaGGGCAGATTGACCTCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: VCLKTASHTGSSRTPRPSAKSKY*GRLTSA Trigger: CGCTGAGGTCAATCTGCCCAAGTACTTAGACTTTGC...GGAAGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS CCA 90 bp | TTGGGCAGATTGACCTCAGCGCTGAGTTGGTCCCCCTTCTCCAGCTaGAAGACTCCTCCCAGGTATATGGGCTCATACCAGGGTTTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: LGRLTSALSWSPFSS*KTPPRYMGSYQGLS Trigger: GCTCAAACCCTGGTATGAGCCCATATACCTGGGAGGAGTCTTCCAGCTGGAGAAGGGGGACCAACTCAGCGCTGAGGTCAATCTGCCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | CAACCTGACCACTCTCCCTTTGCAGAACTCAGGAATGGACATTCGAGGCTCCAGGTAGTCGGGGCAGCCTaGTCCCTTGAAGAGAACCTG | + |
|
Preference number: 5 (lower is better) Translates to: QPDHSPFAELRNGHSRLQVVGAA*SLEENL Trigger: CAGGTTCTCTTCAAGGGACAAGGCTGCCCCGACTAC...CTGGAGCCTCGAATGTCCATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAGGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS-3UTR CAA 90 bp | CCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCTCGGCTCATACCAGGGTTaGAGCTCAGCCCCCTCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: PFSQKTCLSEDSFPHWVLGSYQG*SSAPSG Trigger: CCCTGAGGGGGCTGAGCTCAAACCCTGGTATGAGCC...GAGGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | ATCTGGAAAGGTCTGAAGGTAGGAAGGCCTGAGATCTTATCCAGCCTCATTCTGTTGAGATCCATGCCGTaGGCCAGGAGGGCGTTGGCG | + |
|
Preference number: 5 (lower is better) Translates to: IWKGLKVGRPEILSSLILLRSMP*ARRALA Trigger: CGCCAACGCCCTCCTGGCCAACGGCATGGATCTCAA...CAGAATGAGGCTGGATAAGATCTCAGGCCTTCCTACCTTCAGACCTTTCCAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | TTATTTCTCTCAATGACCCGTAGGGCGATTACAGTCACGGCTCCCGTGGGGAGCACGGCAGAGAGGAGGTaGACTTTCTCCTGGTATGAG | + |
|
Preference number: 5 (lower is better) Translates to: LFLSMTRRAITVTAPVGSTAERR*TFSWYE Trigger: CTCATACCAGGAGAAAGTCAACCTCCTCTCTGCCGT...GCTCCCCACGGGAGCCGTGACTGTAATCGCCCTACGGGTCATTGAGAGAAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS CCA 90 bp | ATAGAACTGATGAGAGGGAGGCCATTTGGGAACTTCTCATCCCTTTaGGGACCGATCACCCCGAAGTTCAGTAGACAGAAGAGCGTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: IELMRGRPFGNFSSL*GPITPKFSRQKSVV Trigger: CACCACGCTCTTCTGTCTACTGAACTTCGGGGTGATCGGTCCCCAAAGGGATGAGAAGTTCCCAAATGGCCTCCCTCTCATCAGTTCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | GACAGCTCAGCTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCAGTAGTCGGGGCAGCCTaGTCCCTTGAAGAGAACCTG | + |
|
Preference number: 5 (lower is better) Translates to: DSSAPFSQKTCLSEDSFPVVGAA*SLEENL Trigger: CAGGTTCTCTTCAAGGGACAAGGCTGCCCCGACTAC...TGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAGCTGAGCTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | GGAAGGCTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAACGGCAGAGAGGAGGTaGACTTTCTCCTGGTATGAG | + |
|
Preference number: 5 (lower is better) Translates to: GRLCIAPQGRIWKGLKVGTAERR*TFSWYE Trigger: CTCATACCAGGAGAAAGTCAACCTCCTCTCTGCCGT...TCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAGCCTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | CTGTGCATTGCACCTCAGGGAAGAATCTGGAAAGGTCTGAAGGTAGGAAGGCCTAAGTACTTGGGCAGATaGACCTCAGCGCTGAGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: LCIAPQGRIWKGLKVGRPKYLGR*TSALSW Trigger: CCAACTCAGCGCTGAGGTCAATCTGCCCAAGTACTT...AGGCCTTCCTACCTTCAGACCTTTCCAGATTCTTCCCTGAGGTGCAATGCACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS-3UTR CAA 90 bp | AGCTTCCCACACTGGGTCCTCCAGGACACCCCGGCCTTCCAAATAAATACATTCGCAAAGTCTAAGTACTaGGGCAGATTGACCTCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: SFPHWVLQDTPAFQINTFAKSKY*GRLTSA Trigger: CGCTGAGGTCAATCTGCCCAAGTACTTAGACTTTGC...GAATGTATTTATTTGGAAGGCCGGGGTGTCCTGGAGGACCCAGTGTGGGAAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS TCA 90 bp | TGCTACGACGTGGGCTACAGGCTTGTCACTCGAATTTTGAGAAGATaGTCTGAGTGTGAGGGTCTGGGCCATAGAACTGATGAGAGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: CYDVGYRLVTRILRR*SECEGLGHRTDERE Trigger: CTCCCTCTCATCAGTTCTATGGCCCAGACCCTCACACTCAGATCATCTTCTCAAAATTCGAGTGACAAGCCTGTAGCCCACGTCGTAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS-3UTR CAA 90 bp | CTCATTCTGAGACAGAGGCAACCTGACCACTCTCCCTTTGCAGAACTCAGGAATAAGTACTTGGGCAGATaGACCTCAGCGCTGAGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: LILRQRQPDHSPFAELRNKYLGR*TSALSW Trigger: CCAACTCAGCGCTGAGGTCAATCTGCCCAAGTACTT...ATTCCTGAGTTCTGCAAAGGGAGAGTGGTCAGGTTGCCTCTGTCTCAGAATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS TCA 90 bp | TGGTGGTTTGCTACGACGTGGGCTACAGGCTTGTCACTCGAATTTTaGGAAGATGATCTGAGTGTGAGGGTCTGGGCCATAGAACTGATG | + |
|
Preference number: 5 (lower is better) Translates to: WWFATTWATGLSLEF*EDDLSVRVWAIELM Trigger: CATCAGTTCTATGGCCCAGACCCTCACACTCAGATCATCTTCTCAAAATTCGAGTGACAAGCCTGTAGCCCACGTCGTAGCAAACCACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS-3UTR CAA 90 bp | CTCCGTTTTCACAGAAAACATGTCTGTCTGAAGACAGCTTCCCACACTGGGTCCACTAGTTGGTTGTCTTaGAGATCCATGCCGTTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LRFHRKHVCLKTASHTGSTSWLS*RSMPLA Trigger: GGCCAACGGCATGGATCTCAAAGACAACCAACTAGT...GGACCCAGTGTGGGAAGCTGTCTTCAGACAGACATGTTTTCTGTGAAAACGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS GCA 72 bp | AGGAGGGCGTTGGCGCGCTGGCTCAGCCACTCCAGCTaGTCCTCCACTTGGTGGTTTGTGAGTGTGAGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: RRALARWLSHSS*SSTWWFVSVRV Trigger: GACCCTCACACTCACAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGCCAACGCCCTCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167924.2 |
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| CDS CAA 72 bp | GGCGCGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTaGGTGGTTTGCTACGACGTGGGCTACAGGCTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: GALAQPLQLLLH*VVCYDVGYRLV Trigger: GACAAGCCTGTAGCCCACGTCGTAGCAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS CAA 90 bp | CCATCGGCTGGCACCACTAGTTGGTTGTCTTTGAGATCCATGCCGTaGGCCAGGAGGGCGTTGGCGCGCTGGCTCAGCCACTCCAGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: PSAGTTSWLSLRSMP*ARRALARWLSHSSC Trigger: GCAGCTGGAGTGGCTGAGCCAGCGCGCCAACGCCCTCCTGGCCAACGGCATGGATCTCAAAGACAACCAACTAGTGGTGCCAGCCGATGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS CCA 72 bp | GCGCGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTTaGTGGTTTGCTACGACGTGGGCTACAGGCTTGTCA | + |
|
Preference number: 6 (lower is better) Translates to: ARWLSHSSCSST*WFATTWATGLS Trigger: TGACAAGCCTGTAGCCCACGTCGTAGCAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS CAA 72 bp | GGCACCACTAGTTGGTTGTCTTTGAGATCCATGCCGTaGGCCAGGAGGGCGTTGGCGCGCTGGCTCAGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: GTTSWLSLRSMP*ARRALARWLSH Trigger: GTGGCTGAGCCAGCGCGCCAACGCCCTCCTGGCCAACGGCATGGATCTCAAAGACAACCAACTAGTGGTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS CAA 90 bp | GAGGGCGTTGGCGCGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTaGGTGGTTTGCTACGACGTGGGCTACAGGCTTGTCACTCGAATT | + |
|
Preference number: 6 (lower is better) Translates to: EGVGALAQPLQLLLH*VVCYDVGYRLVTRI Trigger: AATTCGAGTGACAAGCCTGTAGCCCACGTCGTAGCAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGCCAACGCCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS CAA 90 bp | ACTAGTTGGTTGTCTTTGAGATCCATGCCGTTGGCCAGGAGGGCGTaGGCGCGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTTGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: TSWLSLRSMPLARRA*ARWLSHSSCSSTWW Trigger: CCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGCCAACGCCCTCCTGGCCAACGGCATGGATCTCAAAGACAACCAACTAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS TCA 72 bp | TGGTGGCCCCTGCCACAAGCAGGAATGAGAAGAGGCTaGGACATAGGCACCGCCTGGAGTTCTGGAAGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: WWPLPQAGMRRG*DIGTAWSSGSP Trigger: GGGGCTTCCAGAACTCCAGGCGGTGCCTATGTCTCAGCCTCTTCTCATTCCTGCTTGTGGCAGGGGCCACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS CCA 72 bp | GCGCGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTTaGTGGTTTGTGAGTGTGAGGGTCTGGGCCATAGAA | + |
|
Preference number: 6 (lower is better) Translates to: ARWLSHSSCSST*WFVSVRVWAIE Trigger: TTCTATGGCCCAGACCCTCACACTCACAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167924.2 |
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| CDS CCA 72 bp | CGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTTGGTaGTTTGTGAGTGTGAGGGTCTGGGCCATAGAACTG | + |
|
Preference number: 6 (lower is better) Translates to: RWLSHSSCSSTW*FVSVRVWAIEL Trigger: CAGTTCTATGGCCCAGACCCTCACACTCACAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167924.2 |
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| CDS CAA 90 bp | TGGCGCGCTGGCTCAGCCACTCCAGCTGCTCCTCCACTTGGTGGTTaGCTACGACGTGGGCTACAGGCTTGTCACTCGAATTTTGAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: WRAGSATPAAPPLGG*LRRGLQACHSNFEK Trigger: CTTCTCAAAATTCGAGTGACAAGCCTGTAGCCCACGTCGTAGCAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCCAGCGCGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS CCA 72 bp | GACCGATCACCCCGAAGTTCAGTAGACAGAAGAGCGTaGTGGCCCCTGCCACAAGCAGGAATGAGAAGAGGC | + |
|
Preference number: 6 (lower is better) Translates to: DRSPRSSVDRRA*WPLPQAGMRRG Trigger: GCCTCTTCTCATTCCTGCTTGTGGCAGGGGCCACCACGCTCTTCTGTCTACTGAACTTCGGGGTGATCGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS CAA 72 bp | GGCTCAGCCACTCCAGCTGCTCCTCCACTTGGTGGTTaGCTACGACGTGGGCTACAGGCTTGTCACTCGAAT | + |
|
Preference number: 6 (lower is better) Translates to: GSATPAAPPLGG*LRRGLQACHSN Trigger: ATTCGAGTGACAAGCCTGTAGCCCACGTCGTAGCAAACCACCAAGTGGAGGAGCAGCTGGAGTGGCTGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS CAA 72 bp | TACAACCCATCGGCTGGCACCACTAGTTGGTTGTCTTaGAGATCCATGCCGTTGGCCAGGAGGGCGTTGGCG | + |
|
Preference number: 6 (lower is better) Translates to: YNPSAGTTSWLS*RSMPLARRALA Trigger: CGCCAACGCCCTCCTGGCCAACGGCATGGATCTCAAAGACAACCAACTAGTGGTGCCAGCCGATGGGTTGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS CAA 72 bp | GACGGTGTGGGTGAGGAGCACGTAGTCGGGGCAGCCTaGTCCCTTGAAGAGAACCTGGGAGTAGACAAGGTA | + |
|
Preference number: 6 (lower is better) Translates to: DGVGEEHVVGAA*SLEENLGVDKV Trigger: TACCTTGTCTACTCCCAGGTTCTCTTCAAGGGACAAGGCTGCCCCGACTACGTGCTCCTCACCCACACCGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS CAA 72 bp | TGCCCGGACTCCGCAAAGTCTAAGTACTTGGGCAGATaGACCTCAGCGCTGAGTTGGTCCCCCTTCTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: CPDSAKSKYLGR*TSALSWSPFSS Trigger: GCTGGAGAAGGGGGACCAACTCAGCGCTGAGGTCAATCTGCCCAAGTACTTAGACTTTGCGGAGTCCGGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS CAA 90 bp | AAATCGGCTGACGGTGTGGGTGAGGAGCACGTAGTCGGGGCAGCCTaGTCCCTTGAAGAGAACCTGGGAGTAGACAAGGTACAACCCATC | + |
|
Preference number: 6 (lower is better) Translates to: KSADGVGEEHVVGAA*SLEENLGVDKVQPI Trigger: GATGGGTTGTACCTTGTCTACTCCCAGGTTCTCTTCAAGGGACAAGGCTGCCCCGACTACGTGCTCCTCACCCACACCGTCAGCCGATTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS CCA 72 bp | GGTCTGGGCCATAGAACTGATGAGAGGGAGGCCATTTaGGAACTTCTCATCCCTTTGGGGACCGATCACCCC | + |
|
Preference number: 6 (lower is better) Translates to: GLGHRTDEREAI*ELLIPLGTDHP Trigger: GGGGTGATCGGTCCCCAAAGGGATGAGAAGTTCCCAAATGGCCTCCCTCTCATCAGTTCTATGGCCCAGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS CCA 72 bp | TTGACCTCAGCGCTGAGTTGGTCCCCCTTCTCCAGCTaGAAGACTCCTCCCAGGTATATGGGCTCATACCAG | + |
|
Preference number: 6 (lower is better) Translates to: LTSALSWSPFSS*KTPPRYMGSYQ Trigger: CTGGTATGAGCCCATATACCTGGGAGGAGTCTTCCAGCTGGAGAAGGGGGACCAACTCAGCGCTGAGGTCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS CCA 72 bp | TCTAAGTACTTGGGCAGATTGACCTCAGCGCTGAGTTaGTCCCCCTTCTCCAGCTGGAAGACTCCTCCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: SKYLGRLTSALS*SPFSSWKTPPR Trigger: CCTGGGAGGAGTCTTCCAGCTGGAGAAGGGGGACCAACTCAGCGCTGAGGTCAATCTGCCCAAGTACTTAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
||
| CDS CAA 72 bp | ACAAGGTACAACCCATCGGCTGGCACCACTAGTTGGTaGTCTTTGAGATCCATGCCGTTGGCCAGGAGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: TRYNPSAGTTSW*SLRSMPLARRA Trigger: CGCCCTCCTGGCCAACGGCATGGATCTCAAAGACAACCAACTAGTGGTGCCAGCCGATGGGTTGTACCTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS TCA 72 bp | CTTGACGGCAGAGAGGAGGTTGACTTTCTCCTGGTATaGGATAGCAAATCGGCTGACGGTGTGGGTGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LDGREEVDFLLV*DSKSADGVGEE Trigger: CTCCTCACCCACACCGTCAGCCGATTTGCTATCTCATACCAGGAGAAAGTCAACCTCCTCTCTGCCGTCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025263.15 ENSMUST00000167924.2 |
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| CDS TCA 72 bp | GCTACGACGTGGGCTACAGGCTTGTCACTCGAATTTTaGGAAGATGATCTGAGTGTGAGGGTCTGGGCCATA | + |
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Preference number: 6 (lower is better) Translates to: ATTWATGLSLEF*EDDLSVRVWAI Trigger: TATGGCCCAGACCCTCACACTCAGATCATCTTCTCAAAATTCGAGTGACAAGCCTGTAGCCCACGTCGTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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| CDS TCA 72 bp | GTGGGCTACAGGCTTGTCACTCGAATTTTGAGAAGATaGTCTGAGTGTGAGGGTCTGGGCCATAGAACTGAT | + |
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Preference number: 6 (lower is better) Translates to: VGYRLVTRILRR*SECEGLGHRTD Trigger: ATCAGTTCTATGGCCCAGACCCTCACACTCAGATCATCTTCTCAAAATTCGAGTGACAAGCCTGTAGCCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025263.15 |
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