Pregenerated sensors for TMX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021072Ensembl transcript IDs: ENSMUST00000021471.13, ENSMUST00000162277.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAGGAACCCAGCGATCACTCCTGGGCCGGAGACTGAGCTCGGCTTaGTGGGCATGCAGGAGGGCCCCTGGTGATGGCGTGCTCCCATTG | + |
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Preference number: 1 (lower is better) Translates to: TGTQRSLLGRRLSSA*WACRRAPGDGVLPL Trigger: CAATGGGAGCACGCCATCACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGTGATCGCTGGGTTCCTGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR CCA 90 bp | GGAACCCAGCGATCACTCCTGGGCCGGAGACTGAGCTCGGCTTGCTaGGCATGCAGGAGGGCCCCTGGTGATGGCGTGCTCCCATTGCTT | + |
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Preference number: 1 (lower is better) Translates to: GTQRSLLGRRLSSAC*ACRRAPGDGVLPLL Trigger: AAGCAATGGGAGCACGCCATCACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGTGATCGCTGGGTTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 90 bp | CTTGCTGGGCATGCAGGAGGGCCCCTGGTGATGGCGTGCTCCCATTaGTTCCGTCACGCTTGGCGAGACAGTAGTGGAGGTCAGCCTGGG | + |
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Preference number: 1 (lower is better) Translates to: LAGHAGGPLVMACSH*FRHAWRDSSGGQPG Trigger: CCCAGGCTGACCTCCACTACTGTCTCGCCAAGCGTGACGGAAGCAATGGGAGCACGCCATCACCAGGGGCCCTCCTGCATGCCCAGCAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR TCA 90 bp | GCACAATTTCAACAGGAACCCAGCGATCACTCCTGGGCCGGAGACTaGGCTCGGCTTGCTGGGCATGCAGGAGGGCCCCTGGTGATGGCG | + |
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Preference number: 1 (lower is better) Translates to: AQFQQEPSDHSWAGD*ARLAGHAGGPLVMA Trigger: CGCCATCACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGTGATCGCTGGGTTCCTGTTGAAATTGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 90 bp | GACATGATCGAGAAGACTAGTGTCTGGGTCTACAGGAAGCACACATaGAGTGACACATCCATTCACGCCCCCGAGCACCACCGAGTGGCA | + |
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Preference number: 1 (lower is better) Translates to: DMIEKTSVWVYRKHT*SDTSIHAPEHHRVA Trigger: TGCCACTCGGTGGTGCTCGGGGGCGTGAATGGATGTGTCACTGCATGTGTGCTTCCTGTAGACCCAGACACTAGTCTTCTCGATCATGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 90 bp | ATGTGTCCGTGGCAGATGGGAGGCCCACACAGCGTTGTCTTATGCTaGTCTGAGAAGTGGCTTTGCTTGCTCCCTCTCTATCTTCTGCCT | + |
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Preference number: 1 (lower is better) Translates to: MCPWQMGGPHSVVLC*SEKWLCLLPLYLLP Trigger: AGGCAGAAGATAGAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCCCATCTGCCACGGACACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR CCA 90 bp | CAGATGGGAGGCCCACACAGCGTTGTCTTATGCTGCTCTGAGAAGTaGCTTTGCTTGCTCCCTCTCTATCTTCTGCCTCCTCTTCTGAAA | + |
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Preference number: 1 (lower is better) Translates to: QMGGPHSVVLCCSEK*LCLLPLYLLPPLLK Trigger: TTTCAGAAGAGGAGGCAGAAGATAGAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCCCATCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR GCA 90 bp | GGAGGCCCACACAGCGTTGTCTTATGCTGCTCTGAGAAGTGGCTTTaGTTGCTCCCTCTCTATCTTCTGCCTCCTCTTCTGAAACATCTT | + |
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Preference number: 1 (lower is better) Translates to: GGPHSVVLCCSEKWL*LLPLYLLPPLLKHL Trigger: AAGATGTTTCAGAAGAGGAGGCAGAAGATAGAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR TCA 90 bp | GGAGGGAGTGTCACAGACACCATCTATTCCATAAAGGCTGGTGACTaGCTCATCAAGAATTCAGTCTGCTTTCCCCCTCCAGACATCAAG | + |
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Preference number: 1 (lower is better) Translates to: GGSVTDTIYSIKAGD*LIKNSVCFPPPDIK Trigger: CTTGATGTCTGGAGGGGGAAAGCAGACTGAATTCTTGATGAGTCAGTCACCAGCCTTTATGGAATAGATGGTGTCTGTGACACTCCCTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR TCA 90 bp | AAGGGGAGGGAGTGTCACAGACACCATCTATTCCATAAAGGCTGGTaGCTGACTCATCAAGAATTCAGTCTGCTTTCCCCCTCCAGACAT | + |
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Preference number: 1 (lower is better) Translates to: KGRECHRHHLFHKGW*LTHQEFSLLSPSRH Trigger: ATGTCTGGAGGGGGAAAGCAGACTGAATTCTTGATGAGTCAGTCACCAGCCTTTATGGAATAGATGGTGTCTGTGACACTCCCTCCCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR TCA 90 bp | CTCCTGGGCCGGAGACTGAGCTCGGCTTGCTGGGCATGCAGGAGGGCCCCTGGTGGATACACGAGACTCTaGAAAGAAACTAACAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: LLGRRLSSACWACRRAPGGYTRL*KETNRN Trigger: ATTTCTGTTAGTTTCTTTTCAGAGTCTCGTGTATCC...ACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR CCA 90 bp | CGATCACTCCTGGGCCGGAGACTGAGCTCGGCTTGCTGGGCATGCAGGAGGGCCTCTATGAGGAAATTTTaGACTCTACCTAAGTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: RSLLGRRLSSACWACRRASMRKF*TLPKCS Trigger: ACTGCACTTAGGTAGAGTCCAAAATTTCCTCATAGA...GGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGTGATCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR TCA 90 bp | GGAGGCCCACACAGCGTTGTCTTATGCTGCTCTGAGAAGTGGCTTTGCTTGCTCTTCTGCCTCCTCTTCTaGAACATCTTCTTCATCAGC | + |
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Preference number: 2 (lower is better) Translates to: GGPHSVVLCCSEKWLCLLFCLLF*NIFFIS Trigger: GCTGATGAAGAAGATGTTTCAGAAGAGGAGGCAGAA...GAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR CAA 90 bp | GGCCCACACAGCGTTGTCTTATGCTGCTCTGAGAAGTGGCTTTGCTaGCTCCCTCTCTATCTTCTGCCTCCTCTTCTGAAACATCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: GPHSVVLCCSEKWLC*LPLYLLPPLLKHLL Trigger: AAGAAGATGTTTCAGAAGAGGAGGCAGAAGATAGAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR-3UTR TCA 90 bp | CGTCACGCTTGGCGAGACAGTAGTGGAGGTCAGCCTGGGATACACGAGACTCTGTCCCACTTTGTAAGATaGAATCCATGTAGTCCTTTT | + |
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Preference number: 2 (lower is better) Translates to: RHAWRDSSGGQPGIHETLSHFVR*NPCSPF Trigger: AAAAGGACTACATGGATTTCATCTTACAAAGTGGGA...CAGAGTCTCGTGTATCCCAGGCTGACCTCCACTACTGTCTCGCCAAGCGTGACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR GCA 90 bp | TGGCGAGACAGTAGTGGAGGTCAGCCTGGGATACACGAGACTCTGAAAAGAAACTGCCCATCACAGTACTaGAAGTCTAAGGAAGTCACA | + |
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Preference number: 2 (lower is better) Translates to: WRDSSGGQPGIHETLKRNCPSQY*KSKEVT Trigger: TGTGACTTCCTTAGACTTGCAGTACTGTGATGGGCA...GTTTCTTTTCAGAGTCTCGTGTATCCCAGGCTGACCTCCACTACTGTCTCGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR TCA 90 bp | GGAAGTCACACAGAGAACATAAGGGGAGGGAGTGTCACAGACACCATCTATTCCATAAAGGCTGGTGACTaGCTCATCAAGAATTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: GSHTENIRGGSVTDTIYSIKAGD*LIKNSV Trigger: GACTGAATTCTTGATGAGTCAGTCACCAGCCTTTAT...GGAATAGATGGTGTCTGTGACACTCCCTCCCCTTATGTTCTCTGTGTGACTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR GCA 90 bp | GTCATAGTTCAGCTCGCAATAGAAATGATCACCCAGCTTCAGTTTTGCCAAAGTACCCAGCTTCAGTTTTaGCAAAGTCATAGTATTAAG | + |
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Preference number: 2 (lower is better) Translates to: VIVQLAIEMITQLQFCQSTQLQF*QSHSIK Trigger: CTTAATACTATGACTTTGGCAAAACTGAAGCTGGGT...ACTTTGGCAAAACTGAAGCTGGGTGATCATTTCTATTGCGAGCTGAACTATGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021471.13 ENSMUST00000162277.2 |
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| 3UTR-3UTR GCA 90 bp | AAATACTCCAGTAATGCAAATCTTGGGAAAGGCAGTTTCGAATCTCACACAAAAACCCAGCTTCAGTTTTaGCAAAGTCATAGTATTAAG | + |
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Preference number: 2 (lower is better) Translates to: KYSSNANLGKGSFESHTKTQLQF*QSHSIK Trigger: CTTAATACTATGACTTTGGCAAAACTGAAGCTGGGT...TTTTGTGTGAGATTCGAAACTGCCTTTCCCAAGATTTGCATTACTGGAGTATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 72 bp | CTCCTGGGCCGGAGACTGAGCTCGGCTTGCTGGGCATaGAGGAGGGCCCCTGGTGATGGCGTGCTCCCATTG | + |
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Preference number: 3 (lower is better) Translates to: LLGRRLSSACWA*RRAPGDGVLPL Trigger: CAATGGGAGCACGCCATCACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 72 bp | CAGCGATCACTCCTGGGCCGGAGACTGAGCTCGGCTTaGTGGGCATGCAGGAGGGCCCCTGGTGATGGCGTG | + |
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Preference number: 3 (lower is better) Translates to: QRSLLGRRLSSA*WACRRAPGDGV Trigger: CACGCCATCACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGTGATCGCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR CCA 72 bp | CGATCACTCCTGGGCCGGAGACTGAGCTCGGCTTGCTaGGCATGCAGGAGGGCCCCTGGTGATGGCGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: RSLLGRRLSSAC*ACRRAPGDGVL Trigger: GAGCACGCCATCACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGTGATCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 72 bp | CTTGCTGGGCATGCAGGAGGGCCCCTGGTGATGGCGTaGTCCCATTGCTTCCGTCACGCTTGGCGAGACAGT | + |
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Preference number: 3 (lower is better) Translates to: LAGHAGGPLVMA*SHCFRHAWRDS Trigger: ACTGTCTCGCCAAGCGTGACGGAAGCAATGGGAGCACGCCATCACCAGGGGCCCTCCTGCATGCCCAGCAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 72 bp | CATGCAGGAGGGCCCCTGGTGATGGCGTGCTCCCATTaGTTCCGTCACGCTTGGCGAGACAGTAGTGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: HAGGPLVMACSH*FRHAWRDSSGG Trigger: ACCTCCACTACTGTCTCGCCAAGCGTGACGGAAGCAATGGGAGCACGCCATCACCAGGGGCCCTCCTGCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR CAA 90 bp | ACTCCTGGGCCGGAGACTGAGCTCGGCTTGCTGGGCATGCAGGAGGGCCCCTGGCCAGTAATGCAAATCTaGGGAAAGGCAGTTTCGAAT | + |
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Preference number: 3 (lower is better) Translates to: TPGPETELGLLGMQEGPWPVMQI*GKAVSN Trigger: ATTCGAAACTGCCTTTCCCAAGATTTGCATTACTGG...CCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR CAA 90 bp | ACTCCTGGGCCGGAGACTGAGCTCGGCTTGCTGGGCATGCAGGAGGGCCCCTGGGTCCTTTTGCCGATCTaGTTTCCATTTGTGAGATAC | + |
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Preference number: 3 (lower is better) Translates to: TPGPETELGLLGMQEGPWVLLPI*FPFVRY Trigger: GTATCTCACAAATGGAAACAAGATCGGCAAAAGGAC...CCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR CAA 90 bp | CTCCTGGGCCGGAGACTGAGCTCGGCTTGCTGGGCATGCAGGAGGGCCCCTGGTATCCATGTAGTCCTTTaGCCGATCTTGTTTCCATTT | + |
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Preference number: 3 (lower is better) Translates to: LLGRRLSSACWACRRAPGIHVVL*PILFPF Trigger: AAATGGAAACAAGATCGGCAAAAGGACTACATGGAT...ACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 72 bp | CCGTGGCAGATGGGAGGCCCACACAGCGTTGTCTTATaGTGCTCTGAGAAGTGGCTTTGCTTGCTCCCTCTC | + |
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Preference number: 3 (lower is better) Translates to: PWQMGGPHSVVL*CSEKWLCLLPL Trigger: GAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCCCATCTGCCACGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR GCA 72 bp | GAGAAGACTAGTGTCTGGGTCTACAGGAAGCACACATaGAGTGACACATCCATTCACGCCCCCGAGCACCAC | + |
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Preference number: 3 (lower is better) Translates to: EKTSVWVYRKHT*SDTSIHAPEHH Trigger: GTGGTGCTCGGGGGCGTGAATGGATGTGTCACTGCATGTGTGCTTCCTGTAGACCCAGACACTAGTCTTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR GCA 72 bp | TGGCAGATGGGAGGCCCACACAGCGTTGTCTTATGCTaGTCTGAGAAGTGGCTTTGCTTGCTCCCTCTCTAT | + |
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Preference number: 3 (lower is better) Translates to: WQMGGPHSVVLC*SEKWLCLLPLY Trigger: ATAGAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCCCATCTGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR CCA 72 bp | GGCCCACACAGCGTTGTCTTATGCTGCTCTGAGAAGTaGCTTTGCTTGCTCCCTCTCTATCTTCTGCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: GPHSVVLCCSEK*LCLLPLYLLPP Trigger: AGGAGGCAGAAGATAGAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR TCA 72 bp | GATGGGAGGCCCACACAGCGTTGTCTTATGCTGCTCTaGGAAGTGGCTTTGCTTGCTCCCTCTCTATCTTCT | + |
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Preference number: 3 (lower is better) Translates to: DGRPTQRCLMLL*EVALLAPSLSS Trigger: AGAAGATAGAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR CCA 72 bp | GTGACACATCCATTCACGCCCCCGAGCACCACCGAGTaGCAAATGATTAAGCACAATTTCAACAGGAACCCA | + |
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Preference number: 3 (lower is better) Translates to: VTHPFTPPSTTE*QMIKHNFNRNP Trigger: TGGGTTCCTGTTGAAATTGTGCTTAATCATTTGCCACTCGGTGGTGCTCGGGGGCGTGAATGGATGTGTCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR-3UTR CAA 90 bp | AACTTAGGATGTGTCCGTGGCAGATGGGAGGCCCACACAGCGTTGTCTTATGCTTACTGTTGCTGTGGTTaGCGTCTTTTTGAAGGGCAA | + |
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Preference number: 3 (lower is better) Translates to: NLGCVRGRWEAHTALSYAYCCCG*RLFEGQ Trigger: TTGCCCTTCAAAAAGACGCAAACCACAGCAACAGTA...AGCATAAGACAACGCTGTGTGGGCCTCCCATCTGCCACGGACACATCCTAAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| 3UTR-3UTR CAA 90 bp | TGGCGAGACAGTAGTGGAGGTCAGCCTGGGATACACGAGACTCTGAAAAGAAACCACAAATCTTACTGCTaGGCACCAGGATCTTCTGAA | + |
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Preference number: 3 (lower is better) Translates to: WRDSSGGQPGIHETLKRNHKSYC*APGSSE Trigger: TTCAGAAGATCCTGGTGCCAAGCAGTAAGATTTGTG...GTTTCTTTTCAGAGTCTCGTGTATCCCAGGCTGACCTCCACTACTGTCTCGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR TCA 72 bp | GTCACAGACACCATCTATTCCATAAAGGCTGGTGACTaGCTCATCAAGAATTCAGTCTGCTTTCCCCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: VTDTIYSIKAGD*LIKNSVCFPPP Trigger: TGGAGGGGGAAAGCAGACTGAATTCTTGATGAGTCAGTCACCAGCCTTTATGGAATAGATGGTGTCTGTGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR TCA 72 bp | GAGTGTCACAGACACCATCTATTCCATAAAGGCTGGTaGCTGACTCATCAAGAATTCAGTCTGCTTTCCCCC | + |
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Preference number: 3 (lower is better) Translates to: ECHRHHLFHKGW*LTHQEFSLLSP Trigger: GGGGGAAAGCAGACTGAATTCTTGATGAGTCAGTCACCAGCCTTTATGGAATAGATGGTGTCTGTGACACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR TCA 72 bp | ACAGTAGTGGAGGTCAGCCTGGGATACACGAGACTCTaGAAAGAAACTAACAGAAATCAAACTTCTCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: TVVEVSLGYTRL*KETNRNQTSLQ Trigger: TTGAAGAGAAGTTTGATTTCTGTTAGTTTCTTTTCAGAGTCTCGTGTATCCCAGGCTGACCTCCACTACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR GCA 90 bp | CTCCTGGGCCGGAGACTGAGCTCGGCTTGCTGGGCATGCAGGAGGGCCCCTGGTAGAAGTGGCTTTGCTTaGTCCCTCTCTATCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LLGRRLSSACWACRRAPGRSGFA*SLSIFC Trigger: GCAGAAGATAGAGAGGGAGCAAGCAAAGCCACTTCT...ACCAGGGGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR TCA 90 bp | CGATCACTCCTGGGCCGGAGACTGAGCTCGGCTTGCTGGGCATGCAGGAGGGCCTTCTGCCTCCTCTTCTaGAACATCTTCTTCATCAGC | + |
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Preference number: 4 (lower is better) Translates to: RSLLGRRLSSACWACRRAFCLLF*NIFFIS Trigger: GCTGATGAAGAAGATGTTTCAGAAGAGGAGGCAGAA...GGCCCTCCTGCATGCCCAGCAAGCCGAGCTCAGTCTCCGGCCCAGGAGTGATCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| 3UTR CAA 72 bp | GGATGTGTCCGTGGCAGATGGGAGGCCCACACAGCGTaGTCTTATGCTGCTCTGAGAAGTGGCTTTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: GCVRGRWEAHTA*SYAALRSGFAC Trigger: GCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGGGCCTCCCATCTGCCACGGACACATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| CDS-3UTR TCA 90 bp | CGTCACGCTTGGCGAGACAGTAGTGGAGGTCAGCCTGGGATACACGAGACTCTGTGTCTTATGCTGCTCTaGGAAGTGGCTTTGCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: RHAWRDSSGGQPGIHETLCLMLL*EVALLA Trigger: AGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACA...CAGAGTCTCGTGTATCCCAGGCTGACCTCCACTACTGTCTCGCCAAGCGTGACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR CCA 90 bp | CCACACAGCGTTGTCTTATGCTGCTCTGAGAAGTGGCTTTGCTTGCTCCCTCTCGTCCTTCTTAGTCCTTaGGCCCACATAGCGCCTAAA | + |
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Preference number: 4 (lower is better) Translates to: PHSVVLCCSEKWLCLLPLVLLSP*AHIAPK Trigger: TTTAGGCGCTATGTGGGCCCAAGGACTAAGAAGGAC...GAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCATAAGACAACGCTGTGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| CDS-3UTR TCA 90 bp | CGTCACGCTTGGCGAGACAGTAGTGGAGGTCAGCCTGGGATACACGAGACTCTGGAGTTGAAAAAGTGCTaGCATCATAGTCATCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: RHAWRDSSGGQPGIHETLELKKC*HHSHQN Trigger: GTTCTGATGACTATGATGTCAGCACTTTTTCAACTC...CAGAGTCTCGTGTATCCCAGGCTGACCTCCACTACTGTCTCGCCAAGCGTGACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR GCA 90 bp | TGGCGAGACAGTAGTGGAGGTCAGCCTGGGATACACGAGACTCTGAAAAGAAACTCTGAGAAGTGGCTTTaGTTGCTCCCTCTCTATCTT | + |
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Preference number: 4 (lower is better) Translates to: WRDSSGGQPGIHETLKRNSEKWL*LLPLYL Trigger: AAGATAGAGAGGGAGCAAGCAAAGCCACTTCTCAGA...GTTTCTTTTCAGAGTCTCGTGTATCCCAGGCTGACCTCCACTACTGTCTCGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR CCA 90 bp | AACTTAGGATGTGTCCGTGGCAGATGGGAGGCCCACACAGCGTTGTCTTATGCTGTCCTGAGAGTACTGTaGCAAAAGCAAAAACCAAGT | + |
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Preference number: 4 (lower is better) Translates to: NLGCVRGRWEAHTALSYAVLRVL*QKQKPS Trigger: ACTTGGTTTTTGCTTTTGCCACAGTACTCTCAGGAC...AGCATAAGACAACGCTGTGTGGGCCTCCCATCTGCCACGGACACATCCTAAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| CDS-3UTR GCA 90 bp | AAACTTAGGATGTGTCCGTGGCAGATGGGAGGCCCACACAGCGTTGTCTTATGCTGTGACATCCACTTTTaGAACTTTCACCTCAAGATC | + |
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Preference number: 4 (lower is better) Translates to: KLRMCPWQMGGPHSVVLCCDIHF*NFHLKI Trigger: GATCTTGAGGTGAAAGTTGCAAAAGTGGATGTCACA...GCATAAGACAACGCTGTGTGGGCCTCCCATCTGCCACGGACACATCCTAAGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| CDS-3UTR CCA 90 bp | TGTAGTCCTTTTGCCGATCTTGTTTCCATTTGTGAGATACACAGTACTAGCAGTTGCTGCTCTGAGAAGTaGCTTTGCTTGCTCCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: CSPFADLVSICEIHSTSSCCSEK*LCLLPL Trigger: GAGAGGGAGCAAGCAAAGCCACTTCTCAGAGCAGCA...ACTGCTAGTACTGTGTATCTCACAAATGGAAACAAGATCGGCAAAAGGACTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR CCA 90 bp | AAATACTCCAGTAATGCAAATCTTGGGAAAGGCAGTTTCGAATCTCACACAAAAGTCCTTCTTAGTCCTTaGGCCCACATAGCGCCTAAA | + |
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Preference number: 4 (lower is better) Translates to: KYSSNANLGKGSFESHTKVLLSP*AHIAPK Trigger: TTTAGGCGCTATGTGGGCCCAAGGACTAAGAAGGAC...TTTTGTGTGAGATTCGAAACTGCCTTTCCCAAGATTTGCATTACTGGAGTATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR TCA 90 bp | TGTAGTCCTTTTGCCGATCTTGTTTCCATTTGTGAGATACACAGTACTAGCAGTATGTACACAGAGAGTTaGAAAAGTGCTGACATCATA | + |
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Preference number: 4 (lower is better) Translates to: CSPFADLVSICEIHSTSSMYTES*KSADII Trigger: TATGATGTCAGCACTTTTTCAACTCTCTGTGTACAT...ACTGCTAGTACTGTGTATCTCACAAATGGAAACAAGATCGGCAAAAGGACTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR GCA 90 bp | TTTGCCGATCTTGTTTCCATTTGTGAGATACACAGTACTAGCAGTCAACAACAATGTGACATCCACTTTTaGAACTTTCACCTCAAGATC | + |
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Preference number: 4 (lower is better) Translates to: FADLVSICEIHSTSSQQQCDIHF*NFHLKI Trigger: GATCTTGAGGTGAAAGTTGCAAAAGTGGATGTCACA...TTGTTGTTGACTGCTAGTACTGTGTATCTCACAAATGGAAACAAGATCGGCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR CCA 90 bp | AAATACTCCAGTAATGCAAATCTTGGGAAAGGCAGTTTCGAATCTCACACAAAAGTCCTGAGAGTACTGTaGCAAAAGCAAAAACCAAGT | + |
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Preference number: 4 (lower is better) Translates to: KYSSNANLGKGSFESHTKVLRVL*QKQKPS Trigger: ACTTGGTTTTTGCTTTTGCCACAGTACTCTCAGGAC...TTTTGTGTGAGATTCGAAACTGCCTTTCCCAAGATTTGCATTACTGGAGTATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS CCA 90 bp | GTCCAGTTCTCATCGGTGAGGACGCGCACGTTATTCCGCCGTCCGTaGGCCCCAGGGACCGCCCAGAGCAGCAGGACCAGAGCTGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: VQFSSVRTRTLFRRP*APGTAQSSRTRAAR Trigger: CCTGGCAGCTCTGGTCCTGCTGCTCTGGGCGGTCCCTGGGGCCCACGGACGGCGGAATAACGTGCGCGTCCTCACCGATGAGAACTGGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR CAA 90 bp | CTGTTTTTATTTCCTGAATGGAAACTGTCCAACCTAAAGGACCTACACTGTATAGAGAAGTGGCTTTGCTaGCTCCCTCTCTATCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LFLFPEWKLSNLKDLHCIEKWLC*LPLYLL Trigger: CAGAAGATAGAGAGGGAGCAAGCAAAGCCACTTCTC...TATACAGTGTAGGTCCTTTAGGTTGGACAGTTTCCATTCAGGAAATAAAAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS-3UTR CAA 90 bp | GTCATAGTTCAGCTCGCAATAGAAATGATCACCCAGCTTCAGTTTTGCCAAAGTCTAGTAGAACAGAACTaGGACCAAACCATGATGATA | + |
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Preference number: 5 (lower is better) Translates to: VIVQLAIEMITQLQFCQSLVEQN*DQTMMI Trigger: TATCATCATGGTTTGGTCCAAGTTCTGTTCTACTAG...ACTTTGGCAAAACTGAAGCTGGGTGATCATTTCTATTGCGAGCTGAACTATGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162277.2 |
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| CDS-3UTR CAA 90 bp | AAATACTCCAGTAATGCAAATCTTGGGAAAGGCAGTTTCGAATCTCACACAAAATACTGTTGCTGTGGTTaGCGTCTTTTTGAAGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: KYSSNANLGKGSFESHTKYCCCG*RLFEGQ Trigger: TTGCCCTTCAAAAAGACGCAAACCACAGCAACAGTA...TTTTGTGTGAGATTCGAAACTGCCTTTCCCAAGATTTGCATTACTGGAGTATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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| CDS TCA 72 bp | GCTAGTCCTGATGTACACAGAGAGTTGAAAAAGTGCTaGCATCATAGTCATCAGAACAGAACTTGGACCAAA | + |
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Preference number: 6 (lower is better) Translates to: ASPDVHRELKKC*HHSHQNRTWTK Trigger: TTTGGTCCAAGTTCTGTTCTGATGACTATGATGTCAGCACTTTTTCAACTCTCTGTGTACATCAGGACTAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021471.13 |
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