Pregenerated sensors for TMSB10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079523

Ensembl transcript IDs: ENSMUST00000144337.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	GGTGTGGGTGAGGCACCCACGAGGCCTGCGGACAGAGAAGGGGTTTaGAAGAGACAAAGTGCTTTGTGTGACTGGAAGGGTGGCTGTGGC	+
Preference number: 1 (lower is better) Translates to: GVGEAPTRPADREGV*KRQSALCDWKGGCG Trigger: GCCACAGCCACCCTTCCAGTCACACAAAGCACTTTGTCTCTTCCAAACCCCTTCTCTGTCCGCAGGCCTCGTGGGTGCCTCACCCACACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144337.2
3UTR-3UTR TCA 90 bp	CCATACCCAACCCACAAACCTGGTGTGGGTGAGGCACCCACGAGGCCTGCGGACACAAAGTGCTTTGTGTaGCTGGAAGGGTGGCTGTGG	+
Preference number: 2 (lower is better) Translates to: PYPTHKPGVGEAPTRPADTKCFV*LEGWLW Trigger: CCACAGCCACCCTTCCAGTCACACAAAGCACTTTGT...GTCCGCAGGCCTCGTGGGTGCCTCACCCACACCAGGTTTGTGGGTTGGGTATGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144337.2
3UTR-3UTR CAA 90 bp	CATACCCAACCCACAAACCTGGTGTGGGTGAGGCACCCACGAGGCCTGCGGACAAAGAGACAAAGTGCTTaGTGTGACTGGAAGGGTGGC	+
Preference number: 3 (lower is better) Translates to: HTQPTNLVWVRHPRGLRTKRQSA*CDWKGG Trigger: GCCACCCTTCCAGTCACACAAAGCACTTTGTCTCTT...TGTCCGCAGGCCTCGTGGGTGCCTCACCCACACCAGGTTTGTGGGTTGGGTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144337.2
3UTR CCA 72 bp	GAGGCACCCACGAGGCCTGCGGACAGAGAAGGGGTTTaGAAGAGACAAAGTGCTTTGTGTGACTGGAAGGGT	+
Preference number: 3 (lower is better) Translates to: EAPTRPADREGV*KRQSALCDWKG Trigger: ACCCTTCCAGTCACACAAAGCACTTTGTCTCTTCCAAACCCCTTCTCTGTCCGCAGGCCTCGTGGGTGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144337.2
CDS-3UTR CCA 90 bp	CCTGGTGTGGGTGAGGCACCCACGAGGCCTGCGGACAGAGAAGGGGTTTGGAAGGGAAGGGAGGAGCGCTaGGGTGGGAACCCGGGGCAC	+
Preference number: 4 (lower is better) Translates to: PGVGEAPTRPADREGVWKGREER*GGNPGH Trigger: GTGCCCCGGGTTCCCACCCCAGCGCTCCTCCCTTCC...CTTCCAAACCCCTTCTCTGTCCGCAGGCCTCGTGGGTGCCTCACCCACACCAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144337.2
CDS-3UTR CCA 90 bp	CCAACCCACAAACCTGGTGTGGGTGAGGCACCCACGAGGCCTGCGGACAGAGAAGTGGGGGTGCCGGGCTaGCACAGCAGGGAAGGGAGG	+
Preference number: 4 (lower is better) Translates to: PTHKPGVGEAPTRPADREVGVPG*HSREGR Trigger: CCTCCCTTCCCTGCTGTGCCAGCCCGGCACCCCCAC...TTCTCTGTCCGCAGGCCTCGTGGGTGCCTCACCCACACCAGGTTTGTGGGTTGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144337.2
CDS-3UTR CCA 90 bp	GTGGGTGAGGCACCCACGAGGCCTGCGGACAGAGAAGGGGTTTGGAAGAGACAAGTGGCCGGATGGGGGTaGGGGTGCCGGGCTGGCACA	+
Preference number: 4 (lower is better) Translates to: VGEAPTRPADREGVWKRQVAGWG*GCRAGT Trigger: TGTGCCAGCCCGGCACCCCCACCCCCATCCGGCCAC...TTGTCTCTTCCAAACCCCTTCTCTGTCCGCAGGCCTCGTGGGTGCCTCACCCAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144337.2
CDS-3UTR CCA 90 bp	AAACCTGGTGTGGGTGAGGCACCCACGAGGCCTGCGGACAGAGAAGGGGTTTGGAAGATAGTGGCCGGATaGGGGTGGGGGTGCCGGGCT	+
Preference number: 4 (lower is better) Translates to: KPGVGEAPTRPADREGVWKIVAG*GWGCRA Trigger: AGCCCGGCACCCCCACCCCCATCCGGCCACTATCTT...CCAAACCCCTTCTCTGTCCGCAGGCCTCGTGGGTGCCTCACCCACACCAGGTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144337.2

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