RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMPRSS3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024034

Ensembl transcript IDs: ENSMUST00000024833.13, ENSMUST00000114549.4, ENSMUST00000236793.2, ENSMUST00000237740.2

Found 246 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTGTCGGGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTaGAATGGGCAGAGCAGTAAAGCTGATACTCGCATCCAACATGGC +
Preference number: 1 (lower is better)
Translates to: GVGVRRMLFPLSPFQ*NGQSSKADTRIQHG
Trigger: GCCATGTTGGATGCGAGTATCAGCTTTACTGCTCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGACACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CCA 90 bp AATCTAGGGTGGTGGCAGGGAAAGGTGCCACTTGTGTGCATGAGTTaGTTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCC +
Preference number: 1 (lower is better)
Translates to: NLGWWQGKVPLVCMS*FMKHRKSIQGRFSP
Trigger: GGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATGCACACAAGTGGCACCTTTCCCTGCCACCACCCTAGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CCA 90 bp GGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGCTCTAATCTaGATAGGGTTGAGTCAAAGTACAATGGCTATGTGTGTACAAAAG +
Preference number: 1 (lower is better)
Translates to: GTCILFTESYVGALI*IGLSQSTMAMCVQK
Trigger: CTTTTGTACACACATAGCCATTGTACTTTGACTCAACCCTATCCAGATTAGAGCCCCCACATAGCTTTCTGTGAATAGAATACAGGTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR TCA 90 bp ACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTGAGATCTGGGGAAGGCTCGGGCTGTaGCCACCCTCAGGAGCTCAG +
Preference number: 2 (lower is better)
Translates to: TPGTSSGKETIGWRSEIWGRLGL*PPSGAQ
Trigger: CTGAGCTCCTGAGGGTGGTCACAGCCCGAGCCTTCC...CCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR TCA 90 bp GTACCCACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGGAAGGCTCGGGCTGTaGCCACCCTCAGGAGCTCAG +
Preference number: 2 (lower is better)
Translates to: VPTVGLGTCILFTESYVGGRLGL*PPSGAQ
Trigger: CTGAGCTCCTGAGGGTGGTCACAGCCCGAGCCTTCC...CCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGGTAC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR TCA 90 bp GGTACCCACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGAAGGCTCGGGCTGTaGCCACCCTCAGGAGCTCAG +
Preference number: 2 (lower is better)
Translates to: GTHRGPWDLYSIHRKLCGGRLGL*PPSGAQ
Trigger: CTGAGCTCCTGAGGGTGGTCACAGCCCGAGCCTTCC...CCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGGTACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CCA 90 bp TTTCTGTGCCCACCACCCACCACCACGCATTCACTCAAGCCCGAGGACAAGCCATCCCGGAACCAGCTCTaGGAAGGAGACGATTGGGTG +
Preference number: 2 (lower is better)
Translates to: FLCPPPTTTHSLKPEDKPSRNQL*EGDDWV
Trigger: CACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGA...TGGCTTGTCCTCGGGCTTGAGTGAATGCGTGGTGGTGGGTGGTGGGCACAGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR TCA 90 bp TTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAAGTCCAGAGGGGAAGGCTCGGGCTGTaGCCACCCTCAGGAGCTCAG +
Preference number: 2 (lower is better)
Translates to: FMKHRKSIQGRFSPKVQRGRLGL*PPSGAQ
Trigger: CTGAGCTCCTGAGGGTGGTCACAGCCCGAGCCTTCC...CCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR TCA 90 bp CACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTTGTTGGCAGGCACTCTaGGGAGAAAATCTAGGGTGG +
Preference number: 2 (lower is better)
Translates to: HRPSSPLPEPALGRRRLGCWQAL*GENLGW
Trigger: CCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACA...ACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CCA 90 bp AAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTGGAGAAAATCTAGGGTaGTGGCAGGGAAAGGTGCCA +
Preference number: 2 (lower is better)
Translates to: KFPTPGTSSGKETIGWRSGENLG*WQGKVP
Trigger: TGGCACCTTTCCCTGCCACCACCCTAGATTTTCTCC...AGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR GCA 90 bp ACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGCTCTAGCCCAGTCTTGTCTCTaGCCAGACCTGTGTCCCTCA +
Preference number: 2 (lower is better)
Translates to: TVGLGTCILFTESYVGALAQSCL*PDLCPS
Trigger: TGAGGGACACAGGTCTGGGCAGAGACAAGACTGGGC...TAGAGCCCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR GCA 90 bp CCCACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGCTCTGTCTCCCTTTCAGTaGAATGGGCAGAGCAGTAAA +
Preference number: 2 (lower is better)
Translates to: PTVGLGTCILFTESYVGALSPFQ*NGQSSK
Trigger: TTTACTGCTCTGCCCATTGCACTGAAAGGGAGACAG...AGCCCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR CAA 90 bp AAATCTAGGGTGGTGGCAGGGAAAGGTGCCACTTGTGTGCATGAGTaGGTTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCC +
Preference number: 2 (lower is better)
Translates to: KSRVVAGKGATCVHE*VHEAQKEHPRSFQP
Trigger: GGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATGCACACAAGTGGCACCTTTCCCTGCCACCACCCTAGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR TCA 90 bp GACAAGCCAAGCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCGATTGGGTGGAGATCTaGGATCTGGGAACAAACAGG +
Preference number: 2 (lower is better)
Translates to: DKPSYTKGHLPEGRNSSSDWVEI*DLGTNR
Trigger: CCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATC...GCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGCTTGGCTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CCA 90 bp GCTGCCCCAACTGGTGTTCGATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGCTTGTGTGCATGAGTTaGTTCATGAAGCACAGAAAG +
Preference number: 2 (lower is better)
Translates to: AAPTGVRWLCMRACLCWQLVCMS*FMKHRK
Trigger: CTTTCTGTGCTTCATGAACCAACTCATGCACACAAG...CTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCAGTTGGGGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CCA 90 bp CAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAGAAAATCTAGGGTGGTaGCAGGGAAAGGTGCCACTT +
Preference number: 2 (lower is better)
Translates to: QRDTFQKGGIRQAPNPVRENLGW*QGKVPL
Trigger: AAGTGGCACCTTTCCCTGCCACCACCCTAGATTTTC...TCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CCA 90 bp GACAAGCCAAGCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCAAGGAGACGATTGGGTaGAGATCTGAGATCTGGGAA +
Preference number: 2 (lower is better)
Translates to: DKPSYTKGHLPEGRNSSSKETIG*RSEIWE
Trigger: TTCCCAGATCTCAGATCTCCACCCAATCGTCTCCTT...GCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGCTTGGCTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR GCA 90 bp TTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAAGTCCAGAGGCTGTCTCCCTTTCAGTaGAATGGGCAGAGCAGTAAA +
Preference number: 2 (lower is better)
Translates to: FMKHRKSIQGRFSPKVQRLSPFQ*NGQSSK
Trigger: TTTACTGCTCTGCCCATTGCACTGAAAGGGAGACAG...CCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR GCA 90 bp GGTGCCACTTGTGTGCATGAGTTGGTTCATGAAGCACAGAAAGAGCATCCAAGGCTGTCTCCCTTTCAGTaGAATGGGCAGAGCAGTAAA +
Preference number: 2 (lower is better)
Translates to: GATCVHELVHEAQKEHPRLSPFQ*NGQSSK
Trigger: TTTACTGCTCTGCCCATTGCACTGAAAGGGAGACAG...CCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATGCACACAAGTGGCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR GCA 90 bp TTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCAATTCTTTGCATGAGAGCTTaGCTGTGTTGGCAGGCACTC +
Preference number: 2 (lower is better)
Translates to: LGGDLRSGNKQVTASSPILCMRA*LCWQAL
Trigger: GAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAG...AATTGGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CCA 90 bp TTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTAGGGTGGTGGCAGGGAAACTTGTGTGCATGAGTTaGTTCATGAAGCACAGAAAG +
Preference number: 2 (lower is better)
Translates to: LPVLAGTLRRKSRVVAGKLVCMS*FMKHRK
Trigger: CTTTCTGTGCTTCATGAACCAACTCATGCACACAAG...TTTCCCTGCCACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CCA 90 bp GCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTAAGGAGACGATTGGGTaGAGATCTGAGATCTGGGAA +
Preference number: 2 (lower is better)
Translates to: ATQRDTFQKGGIRQAPNPKETIG*RSEIWE
Trigger: TTCCCAGATCTCAGATCTCCACCCAATCGTCTCCTT...AGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CCA 90 bp ACCCTCCTCTGTTATTGGGTAATATGGGAACCACAGGACTGTGAGCCATGTAAGAAGGAGACGATTGGGTaGAGATCTGAGATCTGGGAA +
Preference number: 2 (lower is better)
Translates to: TLLCYWVIWEPQDCEPCKKETIG*RSEIWE
Trigger: TTCCCAGATCTCAGATCTCCACCCAATCGTCTCCTT...CTTACATGGCTCACAGTCCTGTGGTTCCCATATTACCCAATAACAGAGGAGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CCA 90 bp TACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTAAGGAGACGATTGGGTaGAGATCTGAGATCTGGGAA +
Preference number: 2 (lower is better)
Translates to: YTKGHLPEGRNSSSTKSCKETIG*RSEIWE
Trigger: TTCCCAGATCTCAGATCTCCACCCAATCGTCTCCTT...ACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CCA 90 bp CAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGACTTGTGTGCATGAGTTaGTTCATGAAGCACAGAAAG +
Preference number: 2 (lower is better)
Translates to: QRDTFQKGGIRQAPNPVRLVCMS*FMKHRK
Trigger: CTTTCTGTGCTTCATGAACCAACTCATGCACACAAG...TCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR GCA 90 bp CTGAGATCTGGGAAACCTATTCTAACAGGAAAATGCAAACTCTTGACGTGTGTAGGTGTTCGATGGCTTTaGATGAGAGCTTGCCTGTGT +
Preference number: 2 (lower is better)
Translates to: LRSGKPILTGKCKLLTCVGVRWL*MRACLC
Trigger: ACACAGGCAAGCTCTCATGCAAAGCCATCGAACACC...TACACACGTCAAGAGTTTGCATTTTCCTGTTAGAATAGGTTTCCCAGATCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR GCA 90 bp GACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAAAACAGGAACAAACAGGTGACTaGATCTTCACCAATTCACAT +
Preference number: 2 (lower is better)
Translates to: DTFQKGGIRQAPNPVRKQEQTGD*IFTNSH
Trigger: ATGTGAATTGGTGAAGATGCAGTCACCTGTTTGTTC...CTGTTTTCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR GCA 90 bp CTGAGATCTGGGAAACCTATTCTAACAGGAAAATGCAAACTCTTGACGTGTGTAGAACAAACAGGTGACTaGATCTTCACCAATTCACAT +
Preference number: 2 (lower is better)
Translates to: LRSGKPILTGKCKLLTCVEQTGD*IFTNSH
Trigger: ATGTGAATTGGTGAAGATGCAGTCACCTGTTTGTTC...TACACACGTCAAGAGTTTGCATTTTCCTGTTAGAATAGGTTTCCCAGATCTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR GCA 90 bp CACTCTGCTTATGCATCCCACAATGCAATATGGGATACTTCTGAGATCTGGGAAATTCTAACAGGAAAATaGAAACTCTTGACGTGTGTA +
Preference number: 2 (lower is better)
Translates to: HSAYASHNAIWDTSEIWEILTGK*KLLTCV
Trigger: TACACACGTCAAGAGTTTGCATTTTCCTGTTAGAAT...TTCCCAGATCTCAGAAGTATCCCATATTGCATTGTGGGATGCATAAGCAGAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CCA 90 bp GGCTCTAATCTGGATAGGGTTGAGTCAAAGTACAATGGCTATGTGTGTACAAAAGATACTTCTGAGATCTaGGAAACCTATTCTAACAGG +
Preference number: 2 (lower is better)
Translates to: GSNLDRVESKYNGYVCTKDTSEI*ETYSNR
Trigger: CCTGTTAGAATAGGTTTCCCAGATCTCAGAAGTATC...TTTTGTACACACATAGCCATTGTACTTTGACTCAACCCTATCCAGATTAGAGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CAA 90 bp CTGTGCCCACCACCCACCACCACGCATTCACTCAAGCCCGAGGACAAGCCAAGCGCTTTGCATGAGAGCTaGCCTGTGTTGGCAGGCACT +
Preference number: 3 (lower is better)
Translates to: LCPPPTTTHSLKPEDKPSALHES*PVLAGT
Trigger: AGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGC...GCTTGGCTTGTCCTCGGGCTTGAGTGAATGCGTGGTGGTGGGTGGTGGGCACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CAA 90 bp CTGTGCCCACCACCCACCACCACGCATTCACTCAAGCCCGAGGACAAGCCAAGCCTGGGAAGGAGACGATaGGGTGGAGATCTGAGATCT +
Preference number: 3 (lower is better)
Translates to: LCPPPTTTHSLKPEDKPSLGRRR*GGDLRS
Trigger: AGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAG...GCTTGGCTTGTCCTCGGGCTTGAGTGAATGCGTGGTGGTGGGTGGTGGGCACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CAA 90 bp CACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGCTTTGCATGAGAGCTaGCCTGTGTTGGCAGGCACT +
Preference number: 3 (lower is better)
Translates to: HRPSSPLPEPALGRRRLGALHES*PVLAGT
Trigger: AGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGC...ACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR GCA 72 bp AGCAGCAAGCCACTCCAGGTGTCGGGGTTAGGAGAATaGTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGC +
Preference number: 3 (lower is better)
Translates to: SSKPLQVSGLGE*SSRCLPFSAMG
Trigger: GCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGACACCTGGAGTGGCTTGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CAA 90 bp TATGGGAACCACAGGACTGTGAGCCATGTAAGAGGGACCCGGACACCATCAGCTGAGAGCTTGCCTGTGTaGGCAGGCACTCTGAGGAGA +
Preference number: 3 (lower is better)
Translates to: YGNHRTVSHVRGTRTPSAESLPV*AGTLRR
Trigger: TCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTC...AGCTGATGGTGTCCGGGTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CAA 90 bp CCCACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGCTGAGAGCTTGCCTGTGTaGGCAGGCACTCTGAGGAGA +
Preference number: 3 (lower is better)
Translates to: PTVGLGTCILFTESYVGAESLPV*AGTLRR
Trigger: TCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTC...AGCCCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR CCA 72 bp GTTCCTGGCTTCGTAGCTGCCCCAACTGGTGTTCGATaGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGGCA +
Preference number: 3 (lower is better)
Translates to: VPGFVAAPTGVR*LCMRACLCWQA
Trigger: TGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCAGTTGGGGCAGCTACGAAGCCAGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR TCA 72 bp TTGACGTGTGTAGGATGGGCTTCTGACGTGAGCCCATaGTTTCTGTGCCCACCACCCACCACCACGCATTCA +
Preference number: 3 (lower is better)
Translates to: LTCVGWASDVSP*FLCPPPTTTHS
Trigger: TGAATGCGTGGTGGTGGGTGGTGGGCACAGAAATCATGGGCTCACGTCAGAAGCCCATCCTACACACGTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR CCA 72 bp ACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTaGAGATCTGAGATCTGGGAACAAACAGGTGACTGC +
Preference number: 3 (lower is better)
Translates to: TPGTSSGKETIG*RSEIWEQTGDC
Trigger: GCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CCA 72 bp GAGCTGCCCACAGTTTCAGGTACCCACCGTGGGCCTTaGGACCTGTATTCTATTCACAGAAAGCTATGTGGG +
Preference number: 3 (lower is better)
Translates to: ELPTVSGTHRGP*DLYSIHRKLCG
Trigger: CCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGGTACCTGAAACTGTGGGCAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CAA 90 bp CAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAGAGAGCTTGCCTGTGTaGGCAGGCACTCTGAGGAGA +
Preference number: 3 (lower is better)
Translates to: QRDTFQKGGIRQAPNPVRESLPV*AGTLRR
Trigger: TCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTC...TCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CAA 90 bp TTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCAATTGCTTTGCATGAGAGCTaGCCTGTGTTGGCAGGCACT +
Preference number: 3 (lower is better)
Translates to: LGGDLRSGNKQVTASSPIALHES*PVLAGT
Trigger: AGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGC...AATTGGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CAA 90 bp GGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCAATTCATGGTGTTCGATGGCTTaGCATGAGAGCTTGCCTGTG +
Preference number: 3 (lower is better)
Translates to: GWRSEIWEQTGDCIFTNSWCSMA*HESLPV
Trigger: CACAGGCAAGCTCTCATGCAAAGCCATCGAACACCA...TGAATTGGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CAA 90 bp TACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTCTGGGAAGGAGACGATaGGGTGGAGATCTGAGATCT +
Preference number: 3 (lower is better)
Translates to: YTKGHLPEGRNSSSTKSCLGRRR*GGDLRS
Trigger: AGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAG...ACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR GCA 72 bp GGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTaGATCTTCACCAATTCACATCAGCAGTTCCTGGCT +
Preference number: 3 (lower is better)
Translates to: GWRSEIWEQTGD*IFTNSHQQFLA
Trigger: AGCCAGGAACTGCTGATGTGAATTGGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR GCA 72 bp CAGTCTTGTCTCTGCCCAGACCTGTGTCCCTCACTCTaGTTATGCATCCCACAATGCAATATGGGATACTTC +
Preference number: 3 (lower is better)
Translates to: QSCLCPDLCPSL*LCIPQCNMGYF
Trigger: GAAGTATCCCATATTGCATTGTGGGATGCATAAGCAGAGTGAGGGACACAGGTCTGGGCAGAGACAAGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR TCA 72 bp GGAATTCGTCAAGCACCAAATCCTGTGAGAAAACAGTaGATCAGTCACAGACCAAGTTCCCCACTCCCGGAA +
Preference number: 3 (lower is better)
Translates to: GIRQAPNPVRKQ*ISHRPSSPLPE
Trigger: TTCCGGGAGTGGGGAACTTGGTCTGTGACTGATTCACTGTTTTCTCACAGGATTTGGTGCTTGACGAATTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CAA 90 bp ATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTACTTGTGTGCATGAGTaGGTTCATGAAGCACAGAAA +
Preference number: 3 (lower is better)
Translates to: MALHESLPVLAGTLRRKSTCVHE*VHEAQK
Trigger: TTTCTGTGCTTCATGAACCAACTCATGCACACAAGT...AGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR-3UTR CAA 90 bp CAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAACTTGTGTGCATGAGTaGGTTCATGAAGCACAGAAA +
Preference number: 3 (lower is better)
Translates to: QRDTFQKGGIRQAPNPVRTCVHE*VHEAQK
Trigger: TTTCTGTGCTTCATGAACCAACTCATGCACACAAGT...TCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CCA 72 bp ATGTCTCACATAACCCTCCTCTGTTATTGGGTAATATaGGAACCACAGGACTGTGAGCCATGTAAGAGGGAC +
Preference number: 3 (lower is better)
Translates to: MSHITLLCYWVI*EPQDCEPCKRD
Trigger: GTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATATTACCCAATAACAGAGGAGGGTTATGTGAGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR CCA 72 bp CCCATAGCTATGTCTCACATAACCCTCCTCTGTTATTaGGTAATATGGGAACCACAGGACTGTGAGCCATGT +
Preference number: 3 (lower is better)
Translates to: PIAMSHITLLCY*VIWEPQDCEPC
Trigger: ACATGGCTCACAGTCCTGTGGTTCCCATATTACCCAATAACAGAGGAGGGTTATGTGAGACATAGCTATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR-3UTR CAA 90 bp TCTGAGATCTGGGAAACCTATTCTAACAGGAAAATGCAAACTCTTGACGTGTGTTGGTGTTCGATGGCTTaGCATGAGAGCTTGCCTGTG +
Preference number: 3 (lower is better)
Translates to: SEIWETYSNRKMQTLDVCWCSMA*HESLPV
Trigger: CACAGGCAAGCTCTCATGCAAAGCCATCGAACACCA...ACACACGTCAAGAGTTTGCATTTTCCTGTTAGAATAGGTTTCCCAGATCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR GCA 72 bp CTTCTGAGATCTGGGAAACCTATTCTAACAGGAAAATaGAAACTCTTGACGTGTGTAGGATGGGCTTCTGAC +
Preference number: 3 (lower is better)
Translates to: LLRSGKPILTGK*KLLTCVGWASD
Trigger: GTCAGAAGCCCATCCTACACACGTCAAGAGTTTGCATTTTCCTGTTAGAATAGGTTTCCCAGATCTCAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR CCA 72 bp ATTCTATTCACAGAAAGCTATGTGGGGGCTCTAATCTaGATAGGGTTGAGTCAAAGTACAATGGCTATGTGT +
Preference number: 3 (lower is better)
Translates to: ILFTESYVGALI*IGLSQSTMAMC
Trigger: ACACATAGCCATTGTACTTTGACTCAACCCTATCCAGATTAGAGCCCCCACATAGCTTTCTGTGAATAGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
3UTR CCA 72 bp GCATCCCACAATGCAATATGGGATACTTCTGAGATCTaGGAAACCTATTCTAACAGGAAAATGCAAACTCTT +
Preference number: 3 (lower is better)
Translates to: ASHNAIWDTSEI*ETYSNRKMQTL
Trigger: AAGAGTTTGCATTTTCCTGTTAGAATAGGTTTCCCAGATCTCAGAAGTATCCCATATTGCATTGTGGGATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp CGTTTCAGCCCCAAAGTCCAGAGGTCAGGGGCTTTAGCAGCAAGCCACTCCAGGAAAGGGACAGCCGCGTaGTTCAGGACAGGGGAGGCG +
Preference number: 4 (lower is better)
Translates to: RFSPKVQRSGALAASHSRKGTAA*FRTGEA
Trigger: CGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTT...CCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp AAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTCCTCCACTGTCTCCCTaGCAGCTGTCCACACCGCCC +
Preference number: 4 (lower is better)
Translates to: KFPTPGTSSGKETIGWRSPPLSP*QLSTPP
Trigger: GGGCGGTGTGGACAGCTGCCAGGGAGACAGTGGAGG...AGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp CGTTTCAGCCCCAAAGTCCAGAGGTCAGGGGCTTTAGCAGCAAGCCACTCCAGGGCCAGGGCCACTGAGTaGGCGAGGACATGTTTCCAC +
Preference number: 4 (lower is better)
Translates to: RFSPKVQRSGALAASHSRARATE*ARTCFH
Trigger: GTGGAAACATGTCCTCGCTCACTCAGTGGCCCTGGC...CCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp CACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTTGTGGCTCCCCATCCTaGGGTCCAGCACAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: HRPSSPLPEPALGRRRLGCGSPS*GPAQFP
Trigger: GGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACA...ACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGAGCACCTCCACTGTCTCCCTaGCAGCTGTCCACACCGCCC +
Preference number: 4 (lower is better)
Translates to: GLGECSSRCLPFSAMGRAPPLSP*QLSTPP
Trigger: GGGCGGTGTGGACAGCTGCCAGGGAGACAGTGGAGG...TGCTCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp CGTTTCAGCCCCAAAGTCCAGAGGTCAGGGGCTTTAGCAGCAAGCCACTCCAGGCACAGTCTCCTCTCCTaGCACACCAGGGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RFSPKVQRSGALAASHSRHSLLS*HTRGPP
Trigger: TGGAGGACCCCTGGTGTGCCAGGAGAGGAGACTGTG...CCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp TCGGGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGATCCACGCAGCAGCTGTaGACACTTGGAGCGCCGCTC +
Preference number: 4 (lower is better)
Translates to: SGLGECSSRCLPFSAMGRSTQQL*TLGAPL
Trigger: GAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGA...TCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp CGTTTCAGCCCCAAAGTCCAGAGGTCAGGGGCTTTAGCAGCAAGCCACTCCAGGTCTCGTGCCACAGGCTaGGCACTTCAAGGTGACCAC +
Preference number: 4 (lower is better)
Translates to: RFSPKVQRSGALAASHSRSRATG*ALQGDH
Trigger: GTGGTCACCTTGAAGTGCTCAGCCTGTGGCACGAGA...CCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp AGCTTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTAGGGTGGTGGCAGGGTGTGGCTCCCCATCCTaGGGTCCAGCACAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: SLPVLAGTLRRKSRVVAGCGSPS*GPAQFP
Trigger: GGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACA...CCCTGCCACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp CGTTTCAGCCCCAAAGTCCAGAGGTCAGGGGCTTTAGCAGCAAGCCACTCCAGGCCACGTGGCCTGAGGTaGAGCCTTCCCTCATGTACA +
Preference number: 4 (lower is better)
Translates to: RFSPKVQRSGALAASHSRPRGLR*SLPSCT
Trigger: TGTACATGAGGGAAGGCTGCACCTCAGGCCACGTGG...CCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GCTGCCCCAACTGGTGTTCGATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGCACAGTCTCCTCTCCTaGCACACCAGGGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: AAPTGVRWLCMRACLCWQHSLLS*HTRGPP
Trigger: TGGAGGACCCCTGGTGTGCCAGGAGAGGAGACTGTG...CTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCAGTTGGGGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp AGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGGGAAGGTCCACGCAGCAGCTGTaGACACTTGGAGCGCCGCTC +
Preference number: 4 (lower is better)
Translates to: SSKADTRIQHGHTGVQGRSTQQL*TLGAPL
Trigger: GAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGA...CCTTCCCTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp AGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGGGAAGGGGTGACCACGTGGCCTaGGGTGCAGCCTTCCCTCAT +
Preference number: 4 (lower is better)
Translates to: SSKADTRIQHGHTGVQGRGDHVA*GAAFPH
Trigger: ATGAGGGAAGGCTGCACCTCAGGCCACGTGGTCACC...CCTTCCCTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp GTCGGGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGTCTCGTGCCACAGGCTaGGCACTTCAAGGTGACCAC +
Preference number: 4 (lower is better)
Translates to: VGVRRMLFPLSPFQCNGQSRATG*ALQGDH
Trigger: GTGGTCACCTTGAAGTGCTCAGCCTGTGGCACGAGA...CTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp TATGGGAACCACAGGACTGTGAGCCATGTAAGAGGGACCCGGACACCATCAGCTGCCAGGGCCACTGAGTaGGCGAGGACATGTTTCCAC +
Preference number: 4 (lower is better)
Translates to: YGNHRTVSHVRGTRTPSAARATE*ARTCFH
Trigger: GTGGAAACATGTCCTCGCTCACTCAGTGGCCCTGGC...AGCTGATGGTGTCCGGGTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR GCA 90 bp GGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGAGCAGATCTGCGCAGCCACTaGGTCTCCATCTGGTGCCAC +
Preference number: 4 (lower is better)
Translates to: GLGECSSRCLPFSAMGRADLRSH*VSIWCH
Trigger: GTGGCACCAGATGGAGACGCAGTGGCTGCGCAGATC...TGCTCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS-3UTR GCA 90 bp CCCACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGCTGATCTGCGCAGCCACTaGGTCTCCATCTGGTGCCAC +
Preference number: 4 (lower is better)
Translates to: PTVGLGTCILFTESYVGADLRSH*VSIWCH
Trigger: GTGGCACCAGATGGAGACGCAGTGGCTGCGCAGATC...AGCCCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp ACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTGAGATCTGGTTCAAGGTGACCACGTaGCCTGAGGTGCAGCCTTCC +
Preference number: 4 (lower is better)
Translates to: TPGTSSGKETIGWRSEIWFKVTT*PEVQPS
Trigger: GGAAGGCTGCACCTCAGGCCACGTGGTCACCTTGAA...CCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp TATGGGAACCACAGGACTGTGAGCCATGTAAGAGGGACCCGGACACCATCAGCTCACAGTCTCCTCTCCTaGCACACCAGGGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: YGNHRTVSHVRGTRTPSAHSLLS*HTRGPP
Trigger: TGGAGGACCCCTGGTGTGCCAGGAGAGGAGACTGTG...AGCTGATGGTGTCCGGGTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp GGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGAGCACACAGTCTCCTCTCCTaGCACACCAGGGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: GLGECSSRCLPFSAMGRAHSLLS*HTRGPP
Trigger: TGGAGGACCCCTGGTGTGCCAGGAGAGGAGACTGTG...TGCTCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp GAGAGCTTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTAGGGTGGTGGCATCTCGTGCCACAGGCTaGGCACTTCAAGGTGACCAC +
Preference number: 4 (lower is better)
Translates to: ESLPVLAGTLRRKSRVVASRATG*ALQGDH
Trigger: GTGGTCACCTTGAAGTGCTCAGCCTGTGGCACGAGA...TGCCACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp GACTCCTCGATTCAGCTTGCTTTTAGTGCCCAGTCTTGTCTCTGCCCAGACCTGGCCAGGGCCACTGAGTaGGCGAGGACATGTTTCCAC +
Preference number: 4 (lower is better)
Translates to: DSSIQLAFSAQSCLCPDLARATE*ARTCFH
Trigger: GTGGAAACATGTCCTCGCTCACTCAGTGGCCCTGGC...CAGGTCTGGGCAGAGACAAGACTGGGCACTAAAAGCAAGCTGAATCGAGGAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp CACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTCTCTCCAACTGTTCGTaGATCCAGTCCAGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: HRPSSPLPEPALGRRRLGLSNCS*IQSRKE
Trigger: CTCCTTCCTGGACTGGATTCACGAACAGTTGGAGAG...ACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp GTCGGGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGAGAAGGGACAAGATCTaGGCAGCCACTGCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: VGVRRMLFPLSPFQCNGQRRDKI*AATASP
Trigger: TGGAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCT...CTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS-3UTR CCA 90 bp TCGGGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGAAGTCATCGGAGCACATaGTCCTCCACGCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: SGLGECSSRCLPFSAMGRSHRST*SSTQQL
Trigger: CAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACT...TCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GAGAAAACAGTGAATCAGTCACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTAAAGGGACAGCCGCGTaGTTCAGGACAGGGGAGGCG +
Preference number: 4 (lower is better)
Translates to: EKTVNQSQTKFPTPGTSSKGTAA*FRTGEA
Trigger: CGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTT...AGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTGACTGATTCACTGTTTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CAA 72 bp TGGCTTCGTAGCTGCCCCAACTGGTGTTCGATGGCTTaGCATGAGAGCTTGCCTGTGTTGGCAGGCACTCTG +
Preference number: 4 (lower is better)
Translates to: WLRSCPNWCSMA*HESLPVLAGTL
Trigger: CAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCAGTTGGGGCAGCTACGAAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp ACGATTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCTCCACGCAGCAGCTGTaGACACTTGGAGCGCCGCTC +
Preference number: 4 (lower is better)
Translates to: TIGWRSEIWEQTGDCIFTSTQQL*TLGAPL
Trigger: GAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGA...GGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp CAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAGGTGACCACGTGGCCTaGGGTGCAGCCTTCCCTCAT +
Preference number: 4 (lower is better)
Translates to: QRDTFQKGGIRQAPNPVRGDHVA*GAAFPH
Trigger: ATGAGGGAAGGCTGCACCTCAGGCCACGTGGTCACC...TCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp ACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGCTCTATGTGGCTCCCCATCCTaGGGTCCAGCACAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: TVGLGTCILFTESYVGALCGSPS*GPAQFP
Trigger: GGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACA...TAGAGCCCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR GCA 90 bp GTAATATGGGAACCACAGGACTGTGAGCCATGTAAGAGGGACCCGGACACCATCCCACGTGGCCTGAGGTaGAGCCTTCCCTCATGTACA +
Preference number: 4 (lower is better)
Translates to: VIWEPQDCEPCKRDPDTIPRGLR*SLPSCT
Trigger: TGTACATGAGGGAAGGCTGCACCTCAGGCCACGTGG...GATGGTGTCCGGGTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATATTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR GCA 90 bp GGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGAGCATGTAGCCCGTTCTCGTaGCACAGGCTGAGCACTTCA +
Preference number: 4 (lower is better)
Translates to: GLGECSSRCLPFSAMGRACSPFS*HRLSTS
Trigger: TGAAGTGCTCAGCCTGTGGCACGAGAACGGGCTACA...TGCTCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp AGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGGGAAGGAGTCATCGGAGCACATaGTCCTCCACGCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: SSKADTRIQHGHTGVQGRSHRST*SSTQQL
Trigger: CAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACT...CCTTCCCTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GGTACCCACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGAGTCATCGGAGCACATaGTCCTCCACGCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: GTHRGPWDLYSIHRKLCGSHRST*SSTQQL
Trigger: CAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACT...CCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGGTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp AGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGGGAAGGTTCAAGGTGACCACGTaGCCTGAGGTGCAGCCTTCC +
Preference number: 4 (lower is better)
Translates to: SSKADTRIQHGHTGVQGRFKVTT*PEVQPS
Trigger: GGAAGGCTGCACCTCAGGCCACGTGGTCACCTTGAA...CCTTCCCTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GTCGGGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGATTTTCTCCACCAGATaGGAGGGCACAGGACTGTCC +
Preference number: 4 (lower is better)
Translates to: VGVRRMLFPLSPFQCNGQIFSTR*EGTGLS
Trigger: GGACAGTCCTGTGCCCTCCCATCTGGTGGAGAAAAT...CTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp ACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTGAGATCTGGATTTTCTCCACCAGATaGGAGGGCACAGGACTGTCC +
Preference number: 4 (lower is better)
Translates to: TPGTSSGKETIGWRSEIWIFSTR*EGTGLS
Trigger: GGACAGTCCTGTGCCCTCCCATCTGGTGGAGAAAAT...CCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GCTGCCCCAACTGGTGTTCGATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGAGTTGGGCAGACAGATaGGCTGGATGGTCTCGTCAA +
Preference number: 4 (lower is better)
Translates to: AAPTGVRWLCMRACLCWQSWADR*AGWSRQ
Trigger: TTGACGAGACCATCCAGCCCATCTGTCTGCCCAACT...CTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCAGTTGGGGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp TTCTGTGCCCACCACCCACCACCACGCATTCACTCAAGCCCGAGGACAAGCCAAAGTTCTCTTCAGAGTTaGGCAGACAGATGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: FCAHHPPPRIHSSPRTSQSSLQS*ADRWAG
Trigger: TCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACT...TTGGCTTGTCCTCGGGCTTGAGTGAATGCGTGGTGGTGGGTGGTGGGCACAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp GGTGCCACTTGTGTGCATGAGTTGGTTCATGAAGCACAGAAAGAGCATCCAAGGAAAGGGACAGCCGCGTaGTTCAGGACAGGGGAGGCG +
Preference number: 4 (lower is better)
Translates to: GATCVHELVHEAQKEHPRKGTAA*FRTGEA
Trigger: CGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTT...CCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATGCACACAAGTGGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAAAACAGCCTCCACTGTCTCCCTaGCAGCTGTCCACACCGCCC +
Preference number: 4 (lower is better)
Translates to: DTFQKGGIRQAPNPVRKQPPLSP*QLSTPP
Trigger: GGGCGGTGTGGACAGCTGCCAGGGAGACAGTGGAGG...CTGTTTTCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp GCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGCCAGGGCCACTGAGTaGGCGAGGACATGTTTCCAC +
Preference number: 4 (lower is better)
Translates to: ATQRDTFQKGGIRQAPNPARATE*ARTCFH
Trigger: GTGGAAACATGTCCTCGCTCACTCAGTGGCCCTGGC...AGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp GTACCCACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGAGAAGGGACAAGATCTaGGCAGCCACTGCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: VPTVGLGTCILFTESYVGRRDKI*AATASP
Trigger: TGGAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCT...CCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR GCA 90 bp GGGCAGAGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGTCGGTACTCATCCTCTaGGTTCTTGCAGTCGGAGAC +
Preference number: 4 (lower is better)
Translates to: GQSSKADTRIQHGHTGVQSVLIL*VLAVGD
Trigger: GTCTCCGACTGCAAGAACGCAGAGGATGAGTACCGA...CTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCTCTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp TCGGGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGATCGGTACTCATCCTCTaGGTTCTTGCAGTCGGAGAC +
Preference number: 4 (lower is better)
Translates to: SGLGECSSRCLPFSAMGRSVLIL*VLAVGD
Trigger: GTCTCCGACTGCAAGAACGCAGAGGATGAGTACCGA...TCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GGGCAGAGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGAGTTGGGCAGACAGATaGGCTGGATGGTCTCGTCAA +
Preference number: 4 (lower is better)
Translates to: GQSSKADTRIQHGHTGVQSWADR*AGWSRQ
Trigger: TTGACGAGACCATCCAGCCCATCTGTCTGCCCAACT...CTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCTCTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CAA 72 bp GGAGCTGCCCACAGTTTCAGGTACCCACCGTGGGCCTaGGGACCTGTATTCTATTCACAGAAAGCTATGTGG +
Preference number: 4 (lower is better)
Translates to: GAAHSFRYPPWA*GPVFYSQKAMW
Trigger: CCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGGTACCTGAAACTGTGGGCAGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp ATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTTCTCGTGCCACAGGCTaGGCACTTCAAGGTGACCAC +
Preference number: 4 (lower is better)
Translates to: MALHESLPVLAGTLRRKSSRATG*ALQGDH
Trigger: GTGGTCACCTTGAAGTGCTCAGCCTGTGGCACGAGA...AGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp GAGAAAACAGTGAATCAGTCACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTGCTCGGACAGCTTCATaGGGGCTATGTCATTGCCCA +
Preference number: 4 (lower is better)
Translates to: EKTVNQSQTKFPTPGTSSARTAS*GLCHCP
Trigger: TGGGCAATGACATAGCCCTCATGAAGCTGTCCGAGC...AGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTGACTGATTCACTGTTTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp TACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTTGTGGCTCCCCATCCTaGGGTCCAGCACAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: YTKGHLPEGRNSSSTKSCCGSPS*GPAQFP
Trigger: GGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACA...ACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp ACGATTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCCTATCTCAGGGCCTCTaGTGTTGGGTTCCGGCTCCA +
Preference number: 4 (lower is better)
Translates to: TIGWRSEIWEQTGDCIFTLSQGL*CWVPAP
Trigger: TGGAGCCGGAACCCAACATCAGAGGCCCTGAGATAG...GGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114549.4
CDS-3UTR GCA 90 bp TTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAAGTCCAGAGGCCACGTGGCCTGAGGTaGAGCCTTCCCTCATGTACA +
Preference number: 4 (lower is better)
Translates to: FMKHRKSIQGRFSPKVQRPRGLR*SLPSCT
Trigger: TGTACATGAGGGAAGGCTGCACCTCAGGCCACGTGG...CCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp ACGATTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCCCACGTGGCCTGAGGTaGAGCCTTCCCTCATGTACA +
Preference number: 4 (lower is better)
Translates to: TIGWRSEIWEQTGDCIFTPRGLR*SLPSCT
Trigger: TGTACATGAGGGAAGGCTGCACCTCAGGCCACGTGG...GGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp TCGGGGTTAGGAGAATGCTCTTCCCGCTGTCTCCCTTTCAGTGCAATGGGCAGAGTCATAAACACAGTGTaGCGCAGTGACGATCCACAG +
Preference number: 4 (lower is better)
Translates to: SGLGECSSRCLPFSAMGRVINTV*RSDDPQ
Trigger: CTGTGGATCGTCACTGCGGCACACTGTGTTTATGAC...TCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp ACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTGAGATCTGGCACTGCGTCTCCATCTaGTGCCACAGGACTTATTTT +
Preference number: 4 (lower is better)
Translates to: TPGTSSGKETIGWRSEIWHCVSI*CHRTYF
Trigger: AAAATAAGTCCTGTGGCACCAGATGGAGACGCAGTG...CCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS-3UTR CCA 90 bp CACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTCACTTGAAAGATGAATaGCACCTGTACTTCCCAGAG +
Preference number: 4 (lower is better)
Translates to: HRPSSPLPEPALGRRRLGHLKDE*HLYFPE
Trigger: CTCTGGGAAGTACAGGTGCCATTCATCTTTCAAGTG...ACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp ATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTAGTCATCGGAGCACATaGTCCTCCACGCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: MALHESLPVLAGTLRRKSSHRST*SSTQQL
Trigger: CAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACT...AGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp ATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTTTCAAGGTGACCACGTaGCCTGAGGTGCAGCCTTCC +
Preference number: 4 (lower is better)
Translates to: MALHESLPVLAGTLRRKSFKVTT*PEVQPS
Trigger: GGAAGGCTGCACCTCAGGCCACGTGGTCACCTTGAA...AGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp ACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTGAGATCTGGATTGCCCAGCCGCTTTaGCTTGTACTTGCTGTGATA +
Preference number: 4 (lower is better)
Translates to: TPGTSSGKETIGWRSEIWIAQPL*LVLAVI
Trigger: TATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAAT...CCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp CGTTTCAGCCCCAAAGTCCAGAGGTCAGGGGCTTTAGCAGCAAGCCACTCCAGGCCATACACGTCCCTGTaGTTGCAGATCTTGTTTGAA +
Preference number: 4 (lower is better)
Translates to: RFSPKVQRSGALAASHSRPYTSL*LQILFE
Trigger: TTCAAACAAGATCTGCAACCACAGGGACGTGTATGG...CCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CAA 72 bp TGGTGTTCGATGGCTTTGCATGAGAGCTTGCCTGTGTaGGCAGGCACTCTGAGGAGAAAATCTAGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: WCSMALHESLPV*AGTLRRKSRVV
Trigger: CACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CAA 72 bp TGCCCCAACTGGTGTTCGATGGCTTTGCATGAGAGCTaGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCT +
Preference number: 4 (lower is better)
Translates to: CPNWCSMALHES*PVLAGTLRRKS
Trigger: AGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCAGTTGGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
3UTR CAA 72 bp AGGCAGAACCCATCACTTAGGACTCCTCGATTCAGCTaGCTTTTAGTGCCCAGTCTTGTCTCTGCCCAGACC +
Preference number: 4 (lower is better)
Translates to: RQNPSLRTPRFS*LLVPSLVSAQT
Trigger: GGTCTGGGCAGAGACAAGACTGGGCACTAAAAGCAAGCTGAATCGAGGAGTCCTAAGTGATGGGTTCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp CACTCTGCTTATGCATCCCACAATGCAATATGGGATACTTCTGAGATCTGGGAATCCACGCAGCAGCTGTaGACACTTGGAGCGCCGCTC +
Preference number: 4 (lower is better)
Translates to: HSAYASHNAIWDTSEIWESTQQL*TLGAPL
Trigger: GAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGA...TTCCCAGATCTCAGAAGTATCCCATATTGCATTGTGGGATGCATAAGCAGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp CACTCTGCTTATGCATCCCACAATGCAATATGGGATACTTCTGAGATCTGGGAAGGTGACCACGTGGCCTaGGGTGCAGCCTTCCCTCAT +
Preference number: 4 (lower is better)
Translates to: HSAYASHNAIWDTSEIWEGDHVA*GAAFPH
Trigger: ATGAGGGAAGGCTGCACCTCAGGCCACGTGGTCACC...TTCCCAGATCTCAGAAGTATCCCATATTGCATTGTGGGATGCATAAGCAGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp GCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGCTCGGACAGCTTCATaGGGGCTATGTCATTGCCCA +
Preference number: 4 (lower is better)
Translates to: ATQRDTFQKGGIRQAPNPARTAS*GLCHCP
Trigger: TGGGCAATGACATAGCCCTCATGAAGCTGTCCGAGC...AGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp GGTGCCACTTGTGTGCATGAGTTGGTTCATGAAGCACAGAAAGAGCATCCAAGGTGTAGCCCGTTCTCGTaGCACAGGCTGAGCACTTCA +
Preference number: 4 (lower is better)
Translates to: GATCVHELVHEAQKEHPRCSPFS*HRLSTS
Trigger: TGAAGTGCTCAGCCTGTGGCACGAGAACGGGCTACA...CCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATGCACACAAGTGGCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp GACTCCTCGATTCAGCTTGCTTTTAGTGCCCAGTCTTGTCTCTGCCCAGACCTGGTCATAAACACAGTGTaGCGCAGTGACGATCCACAG +
Preference number: 4 (lower is better)
Translates to: DSSIQLAFSAQSCLCPDLVINTV*RSDDPQ
Trigger: CTGTGGATCGTCACTGCGGCACACTGTGTTTATGAC...CAGGTCTGGGCAGAGACAAGACTGGGCACTAAAAGCAAGCTGAATCGAGGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR GCA 90 bp AGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGGGAAGGGTCATAAACACAGTGTaGCGCAGTGACGATCCACAG +
Preference number: 4 (lower is better)
Translates to: SSKADTRIQHGHTGVQGRVINTV*RSDDPQ
Trigger: CTGTGGATCGTCACTGCGGCACACTGTGTTTATGAC...CCTTCCCTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp TTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTAGGGTGGTGGCAGGGAAAGTCATAAACACAGTGTaGCGCAGTGACGATCCACAG +
Preference number: 4 (lower is better)
Translates to: LPVLAGTLRRKSRVVAGKVINTV*RSDDPQ
Trigger: CTGTGGATCGTCACTGCGGCACACTGTGTTTATGAC...TTTCCCTGCCACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp ACGATTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCAGAAGGGACAAGATCTaGGCAGCCACTGCGTCTGGT +
Preference number: 4 (lower is better)
Translates to: TIGWRSEIWEQTGDCIFTRRDKI*AATASG
Trigger: ACCAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCT...GGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp CATGAGTTGGTTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAATTCAAGGTGACCACGTaGCCTGAGGTGCAGCCTTCC +
Preference number: 4 (lower is better)
Translates to: HELVHEAQKEHPRSFQPQFKVTT*PEVQPS
Trigger: GGAAGGCTGCACCTCAGGCCACGTGGTCACCTTGAA...TTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GAGAAAACAGTGAATCAGTCACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTATTTTCTCCACCAGATaGGAGGGCACAGGACTGTCC +
Preference number: 4 (lower is better)
Translates to: EKTVNQSQTKFPTPGTSSIFSTR*EGTGLS
Trigger: GGACAGTCCTGTGCCCTCCCATCTGGTGGAGAAAAT...AGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTGACTGATTCACTGTTTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp GTACCCACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGCGTCACCTTGTCATCTaGCAAGAGGTGATTGATGGA +
Preference number: 4 (lower is better)
Translates to: VPTVGLGTCILFTESYVGRHLVI*QEVIDG
Trigger: TCCATCAATCACCTCTTGTCAGATGACAAGGTGACG...CCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp TACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGCTCGGACAGCTTCATaGGGGCTATGTCATTGCCCA +
Preference number: 4 (lower is better)
Translates to: YTKGHLPEGRNSSSTKSCARTAS*GLCHCP
Trigger: TGGGCAATGACATAGCCCTCATGAAGCTGTCCGAGC...ACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp TATGGGAACCACAGGACTGTGAGCCATGTAAGAGGGACCCGGACACCATCAGCTTGCGTCTCCATCTGGTaGCACAGGACTTATTTTCAA +
Preference number: 4 (lower is better)
Translates to: YGNHRTVSHVRGTRTPSACVSIW*HRTYFQ
Trigger: TTGAAAATAAGTCCTGTGGCACCAGATGGAGACGCA...AGCTGATGGTGTCCGGGTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR GCA 90 bp ACGATTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCTCGGTACTCATCCTCTaGGTTCTTGCAGTCGGAGAC +
Preference number: 4 (lower is better)
Translates to: TIGWRSEIWEQTGDCIFTSVLIL*VLAVGD
Trigger: GTCTCCGACTGCAAGAACGCAGAGGATGAGTACCGA...GGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp ATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTTCGGTACTCATCCTCTaGGTTCTTGCAGTCGGAGAC +
Preference number: 4 (lower is better)
Translates to: MALHESLPVLAGTLRRKSSVLIL*VLAVGD
Trigger: GTCTCCGACTGCAAGAACGCAGAGGATGAGTACCGA...AGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GTAATATGGGAACCACAGGACTGTGAGCCATGTAAGAGGGACCCGGACACCATCCACTGCGTCTCCATCTaGTGCCACAGGACTTATTTT +
Preference number: 4 (lower is better)
Translates to: VIWEPQDCEPCKRDPDTIHCVSI*CHRTYF
Trigger: AAAATAAGTCCTGTGGCACCAGATGGAGACGCAGTG...GATGGTGTCCGGGTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATATTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp TTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTAGGGTGGTGGCAGGGAAAATTGCCCAGCCGCTTTaGCTTGTACTTGCTGTGATA +
Preference number: 4 (lower is better)
Translates to: LPVLAGTLRRKSRVVAGKIAQPL*LVLAVI
Trigger: TATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAAT...TTTCCCTGCCACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTAGTTGGGCAGACAGATaGGCTGGATGGTCTCGTCAA +
Preference number: 4 (lower is better)
Translates to: ATQRDTFQKGGIRQAPNPSWADR*AGWSRQ
Trigger: TTGACGAGACCATCCAGCCCATCTGTCTGCCCAACT...AGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp CATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAAGTCCAGAGGTCAGTTCTCTTCAGAGTTaGGCAGACAGATGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: HEAQKEHPRSFQPQSPEVSSLQS*ADRWAG
Trigger: TCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACT...GACCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GAGAAAACAGTGAATCAGTCACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTAGTTCTCTTCAGAGTTaGGCAGACAGATGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: EKTVNQSQTKFPTPGTSSSSLQS*ADRWAG
Trigger: TCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACT...AGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTGACTGATTCACTGTTTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GGTGCCACTTGTGTGCATGAGTTGGTTCATGAAGCACAGAAAGAGCATCCAAGGCGCAGCCACTGCGTCTaGTGCCACAGGACTTATTTT +
Preference number: 4 (lower is better)
Translates to: GATCVHELVHEAQKEHPRRSHCV*CHRTYF
Trigger: AAAATAAGTCCTGTGGCACCAGACGCAGTGGCTGCG...CCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATGCACACAAGTGGCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp GGGCAGAGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGAATACACTTGAAAGATaGATGGCACCTGTACTTCCC +
Preference number: 4 (lower is better)
Translates to: GQSSKADTRIQHGHTGVQNTLER*MAPVLP
Trigger: GGGAAGTACAGGTGCCATTCATCTTTCAAGTGTATT...CTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCTCTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp ACCGTGGGCCTTGGGACCTGTATTCTATTCACAGAAAGCTATGTGGGGGCTCTACGTCACCTTGTCATCTaGCAAGAGGTGATTGATGGA +
Preference number: 4 (lower is better)
Translates to: TVGLGTCILFTESYVGALRHLVI*QEVIDG
Trigger: TCCATCAATCACCTCTTGTCAGATGACAAGGTGACG...TAGAGCCCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp CATGAGTTGGTTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAACTCTCCAACTGTTCGTaGATCCAGTCCAGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: HELVHEAQKEHPRSFQPQLSNCS*IQSRKE
Trigger: CTCCTTCCTGGACTGGATTCACGAACAGTTGGAGAG...TTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp TACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTCTCTCCAACTGTTCGTaGATCCAGTCCAGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: YTKGHLPEGRNSSSTKSCLSNCS*IQSRKE
Trigger: CTCCTTCCTGGACTGGATTCACGAACAGTTGGAGAG...ACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp AGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGGGAAGGTGCGTCTCCATCTGGTaGCACAGGACTTATTTTCAA +
Preference number: 4 (lower is better)
Translates to: SSKADTRIQHGHTGVQGRCVSIW*HRTYFQ
Trigger: TTGAAAATAAGTCCTGTGGCACCAGATGGAGACGCA...CCTTCCCTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS-3UTR GCA 90 bp TTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCAATTAGAAGGGACAAGATCTaGGCAGCCACTGCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: LGGDLRSGNKQVTASSPIRRDKI*AATASP
Trigger: TGGAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCT...AATTGGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS-3UTR GCA 90 bp TTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCAATTTGTAGCCCGTTCTCGTaGCACAGGCTGAGCACTTCA +
Preference number: 4 (lower is better)
Translates to: LGGDLRSGNKQVTASSPICSPFS*HRLSTS
Trigger: TGAAGTGCTCAGCCTGTGGCACGAGAACGGGCTACA...AATTGGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp CATGAGTTGGTTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAATTTTCTCCACCAGATaGGAGGGCACAGGACTGTCC +
Preference number: 4 (lower is better)
Translates to: HELVHEAQKEHPRSFQPQIFSTR*EGTGLS
Trigger: GGACAGTCCTGTGCCCTCCCATCTGGTGGAGAAAAT...TTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GGCTCTAATCTGGATAGGGTTGAGTCAAAGTACAATGGCTATGTGTGTACAAAAAAAGGGACAGCCGCGTaGTTCAGGACAGGGGAGGCG +
Preference number: 4 (lower is better)
Translates to: GSNLDRVESKYNGYVCTKKGTAA*FRTGEA
Trigger: CGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTT...TTTTGTACACACATAGCCATTGTACTTTGACTCAACCCTATCCAGATTAGAGCC
50% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp GATAGGGTTGAGTCAAAGTACAATGGCTATGTGTGTACAAAAGTAGTTTGTCCTCCTCCACTGTCTCCCTaGCAGCTGTCCACACCGCCC +
Preference number: 4 (lower is better)
Translates to: DRVESKYNGYVCTKVVCPPPLSP*QLSTPP
Trigger: GGGCGGTGTGGACAGCTGCCAGGGAGACAGTGGAGG...AGGACAAACTACTTTTGTACACACATAGCCATTGTACTTTGACTCAACCCTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp AAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTTTAGTTCAATACACTTaGAAGATGAATGGCACCTGT +
Preference number: 4 (lower is better)
Translates to: KFPTPGTSSGKETIGWRSLVQYT*KMNGTC
Trigger: ACAGGTGCCATTCATCTTTCAAGTGTATTGAACTAA...AGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp CAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGACGTCACCTTGTCATCTaGCAAGAGGTGATTGATGGA +
Preference number: 4 (lower is better)
Translates to: QRDTFQKGGIRQAPNPVRRHLVI*QEVIDG
Trigger: TCCATCAATCACCTCTTGTCAGATGACAAGGTGACG...TCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp CATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAAGTCCAGAGGTCTGCGTCTCCATCTGGTaGCACAGGACTTATTTTCAA +
Preference number: 4 (lower is better)
Translates to: HEAQKEHPRSFQPQSPEVCVSIW*HRTYFQ
Trigger: TTGAAAATAAGTCCTGTGGCACCAGATGGAGACGCA...GACCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS-3UTR CCA 90 bp TTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAAGTCCAGAGGCACTGCGTCTCCATCTaGTGCCACAGGACTTATTTT +
Preference number: 4 (lower is better)
Translates to: FMKHRKSIQGRFSPKVQRHCVSI*CHRTYF
Trigger: AAAATAAGTCCTGTGGCACCAGATGGAGACGCAGTG...CCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS-3UTR CCA 90 bp GCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTATTGCCCAGCCGCTTTaGCTTGTACTTGCTGTGATA +
Preference number: 4 (lower is better)
Translates to: ATQRDTFQKGGIRQAPNPIAQPL*LVLAVI
Trigger: TATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAAT...AGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp TATGGGAACCACAGGACTGTGAGCCATGTAAGAGGGACCCGGACACCATCAGCTTTAGTTCAATACACTTaGAAGATGAATGGCACCTGT +
Preference number: 4 (lower is better)
Translates to: YGNHRTVSHVRGTRTPSALVQYT*KMNGTC
Trigger: ACAGGTGCCATTCATCTTTCAAGTGTATTGAACTAA...AGCTGATGGTGTCCGGGTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp GACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAAAACAGCGTCACCTTGTCATCTaGCAAGAGGTGATTGATGGA +
Preference number: 4 (lower is better)
Translates to: DTFQKGGIRQAPNPVRKQRHLVI*QEVIDG
Trigger: TCCATCAATCACCTCTTGTCAGATGACAAGGTGACG...CTGTTTTCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp CACTCTGCTTATGCATCCCACAATGCAATATGGGATACTTCTGAGATCTGGGAACTCTCCAACTGTTCGTaGATCCAGTCCAGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: HSAYASHNAIWDTSEIWELSNCS*IQSRKE
Trigger: CTCCTTCCTGGACTGGATTCACGAACAGTTGGAGAG...TTCCCAGATCTCAGAAGTATCCCATATTGCATTGTGGGATGCATAAGCAGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp ACGATTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCCACTTGAAAGATGAATaGCACCTGTACTTCCCAGAG +
Preference number: 4 (lower is better)
Translates to: TIGWRSEIWEQTGDCIFTHLKDE*HLYFPE
Trigger: CTCTGGGAAGTACAGGTGCCATTCATCTTTCAAGTG...GGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp CACTCTGCTTATGCATCCCACAATGCAATATGGGATACTTCTGAGATCTGGGAAAGTTGGGCAGACAGATaGGCTGGATGGTCTCGTCAA +
Preference number: 4 (lower is better)
Translates to: HSAYASHNAIWDTSEIWESWADR*AGWSRQ
Trigger: TTGACGAGACCATCCAGCCCATCTGTCTGCCCAACT...TTCCCAGATCTCAGAAGTATCCCATATTGCATTGTGGGATGCATAAGCAGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp TTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAAGTCCAGAGGCCATACACGTCCCTGTaGTTGCAGATCTTGTTTGAA +
Preference number: 4 (lower is better)
Translates to: FMKHRKSIQGRFSPKVQRPYTSL*LQILFE
Trigger: TTCAAACAAGATCTGCAACCACAGGGACGTGTATGG...CCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp CAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAAATACACTTGAAAGATaGATGGCACCTGTACTTCCC +
Preference number: 4 (lower is better)
Translates to: QRDTFQKGGIRQAPNPVRNTLER*MAPVLP
Trigger: GGGAAGTACAGGTGCCATTCATCTTTCAAGTGTATT...TCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR TCA 90 bp TTCATGAAGCACAGAAAGAGCATCCAAGGTCGTTTCAGCCCCAAAGTCCAGAGGAATACACTTGAAAGATaGATGGCACCTGTACTTCCC +
Preference number: 4 (lower is better)
Translates to: FMKHRKSIQGRFSPKVQRNTLER*MAPVLP
Trigger: GGGAAGTACAGGTGCCATTCATCTTTCAAGTGTATT...CCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR GCA 90 bp CTGAGATCTGGGAAACCTATTCTAACAGGAAAATGCAAACTCTTGACGTGTGTATGTAGCCCGTTCTCGTaGCACAGGCTGAGCACTTCA +
Preference number: 4 (lower is better)
Translates to: LRSGKPILTGKCKLLTCVCSPFS*HRLSTS
Trigger: TGAAGTGCTCAGCCTGTGGCACGAGAACGGGCTACA...TACACACGTCAAGAGTTTGCATTTTCCTGTTAGAATAGGTTTCCCAGATCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp CACTCTGCTTATGCATCCCACAATGCAATATGGGATACTTCTGAGATCTGGGAAAGTTCTCTTCAGAGTTaGGCAGACAGATGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: HSAYASHNAIWDTSEIWESSLQS*ADRWAG
Trigger: TCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACT...TTCCCAGATCTCAGAAGTATCCCATATTGCATTGTGGGATGCATAAGCAGAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR TCA 90 bp GATAGGGTTGAGTCAAAGTACAATGGCTATGTGTGTACAAAAGTAGTTTGTCCTGCTCGGACAGCTTCATaGGGGCTATGTCATTGCCCA +
Preference number: 4 (lower is better)
Translates to: DRVESKYNGYVCTKVVCPARTAS*GLCHCP
Trigger: TGGGCAATGACATAGCCCTCATGAAGCTGTCCGAGC...AGGACAAACTACTTTTGTACACACATAGCCATTGTACTTTGACTCAACCCTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp TTGGGTGGAGATCTGAGATCTGGGAACAAACAGGTGACTGCATCTTCACCAATTCCATACACGTCCCTGTaGTTGCAGATCTTGTTTGAA +
Preference number: 4 (lower is better)
Translates to: LGGDLRSGNKQVTASSPIPYTSL*LQILFE
Trigger: TTCAAACAAGATCTGCAACCACAGGGACGTGTATGG...AATTGGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CCA 90 bp GGCTCTAATCTGGATAGGGTTGAGTCAAAGTACAATGGCTATGTGTGTACAAAAATTGCCCAGCCGCTTTaGCTTGTACTTGCTGTGATA +
Preference number: 4 (lower is better)
Translates to: GSNLDRVESKYNGYVCTKIAQPL*LVLAVI
Trigger: TATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAAT...TTTTGTACACACATAGCCATTGTACTTTGACTCAACCCTATCCAGATTAGAGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS-3UTR CCA 90 bp CTGAGATCTGGGAAACCTATTCTAACAGGAAAATGCAAACTCTTGACGTGTGTACCATACACGTCCCTGTaGTTGCAGATCTTGTTTGAA +
Preference number: 4 (lower is better)
Translates to: LRSGKPILTGKCKLLTCVPYTSL*LQILFE
Trigger: TTCAAACAAGATCTGCAACCACAGGGACGTGTATGG...TACACACGTCAAGAGTTTGCATTTTCCTGTTAGAATAGGTTTCCCAGATCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS TCA 90 bp GGCTTTTCCAGTCATCGGAGCACATGGTCCTCCACGCAGCAGCTGTaGACACTTGGAGCGCCGCTCTTTGGCCGCTCACCCGCACGCATC +
Preference number: 5 (lower is better)
Translates to: GFSSHRSTWSSTQQL*TLGAPLFGRSPARI
Trigger: GATGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACTGGAAAAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp CAGTCATCGGAGCACATGGTCCTCCACGCAGCAGCTGTGAACACTTaGAGCGCCGCTCTTTGGCCGCTCACCCGCACGCATCGGTACTCA +
Preference number: 5 (lower is better)
Translates to: QSSEHMVLHAAAVNT*SAALWPLTRTHRYS
Trigger: TGAGTACCGATGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp ATGGTCCTCCACGCAGCAGCTGTGAACACTTGGAGCGCCGCTCTTTaGCCGCTCACCCGCACGCATCGGTACTCATCCTCTGCGTTCTTG +
Preference number: 5 (lower is better)
Translates to: MVLHAAAVNTWSAAL*PLTRTHRYSSSAFL
Trigger: CAAGAACGCAGAGGATGAGTACCGATGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS GCA 90 bp ATCATCCAAGCCGAAGAGAGACCGGAAGGAGAAGGGAGCTTCGGCTaGCGGAGGGTCATTCTCCCCCATGGTGACTATCTCAGGGCCTCT +
Preference number: 5 (lower is better)
Translates to: IIQAEERPEGEGSFG*RRVILPHGDYLRAS
Trigger: AGAGGCCCTGAGATAGTCACCATGGGGGAGAATGACCCTCCGGCAGCCGAAGCTCCCTTCTCCTTCCGGTCTCTCTTCGGCTTGGATGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114549.4
CDS TCA 90 bp CAGGACAGGGGAGGCGTCACCTCCATCCTCTGTGGCTCCCCATCCTaGGGTCCAGCACAGTTTCCCATCGGGAAAGTTCTCTTCAGAGTT +
Preference number: 5 (lower is better)
Translates to: QDRGGVTSILCGSPS*GPAQFPIGKVLFRV
Trigger: AACTCTGAAGAGAACTTTCCCGATGGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACAGAGGATGGAGGTGACGCCTCCCCTGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp CTGAGCTCACATAGCTGGGAAACCCCAGCTGGGCACAGGCAATCTTaGCATAGTGGCTTTTCCAGTCATCGGAGCACATGGTCCTCCACG +
Preference number: 5 (lower is better)
Translates to: LSSHSWETPAGHRQS*HSGFSSHRSTWSST
Trigger: CGTGGAGGACCATGTGCTCCGATGACTGGAAAAGCCACTATGCCAAGATTGCCTGTGCCCAGCTGGGGTTTCCCAGCTATGTGAGCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp TCCCTGTGGTTGCAGATCTTGTTTGAAATTAAAGGGACAGCCGCGTaGTTCAGGACAGGGGAGGCGTCACCTCCATCCTCTGTGGCTCCC +
Preference number: 5 (lower is better)
Translates to: SLWLQILFEIKGTAA*FRTGEASPPSSVAP
Trigger: GGGAGCCACAGAGGATGGAGGTGACGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS TCA 90 bp CAGAGTGGTGTAACGCCGTCACCTTGTCATCTGACAAGAGGTGATTaGTGGACACGAAGTCGCCCTGGAACTGCTCCTCCAGCGCATCCA +
Preference number: 5 (lower is better)
Translates to: QSGVTPSPCHLTRGD*WTRSRPGTAPPAHP
Trigger: TGGATGCGCTGGAGGAGCAGTTCCAGGGCGACTTCGTGTCCATCAATCACCTCTTGTCAGATGACAAGGTGACGGCGTTACACCACTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp ACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTGAGATCTGGCATTGCCCAGCCGCTTaGGCTTGTACTTGCTGTGAT +
Preference number: 5 (lower is better)
Translates to: TPGTSSGKETIGWRSEIWHCPAA*ACTCCD
Trigger: ATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAATG...CCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS TCA 90 bp TACACAGAGTGGTGTAACGCCGTCACCTTGTCATCTGACAAGAGGTaGTTGATGGACACGAAGTCGCCCTGGAACTGCTCCTCCAGCGCA +
Preference number: 5 (lower is better)
Translates to: YTEWCNAVTLSSDKR*LMDTKSPWNCSSSA
Trigger: TGCGCTGGAGGAGCAGTTCCAGGGCGACTTCGTGTCCATCAATCACCTCTTGTCAGATGACAAGGTGACGGCGTTACACCACTCTGTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS GCA 90 bp GGGCAGAAGGGACAAGATCTGCGCAGCCACTGCGTCTCCATCTGGTaGCACAGGACTTATTTTCAAATCATCCAAGCCGAAGAGAGACCG +
Preference number: 5 (lower is better)
Translates to: GQKGQDLRSHCVSIW*HRTYFQIIQAEERP
Trigger: CGGTCTCTCTTCGGCTTGGATGATTTGAAAATAAGTCCTGTGGCACCAGATGGAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS CCA 90 bp CACTTGAAAGATGAATGGCACCTGTACTTCCCAGAGCAGTCGAAGTaGATGCCCAGACCGATGGCCAGCGCCAGTATCAAGGCGATGATC +
Preference number: 5 (lower is better)
Translates to: HLKDEWHLYFPEQSK*MPRPMASASIKAMI
Trigger: GATCATCGCCTTGATACTGGCGCTGGCCATCGGTCTGGGCATCCACTTCGACTGCTCTGGGAAGTACAGGTGCCATTCATCTTTCAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp TTCCCATCGGGAAAGTTCTCTTCAGAGTTGGGCAGACAGATGGGCTaGATGGTCTCGTCAAAGGTGAGTGGCTCGGACAGCTTCATGAGG +
Preference number: 5 (lower is better)
Translates to: FPSGKFSSELGRQMG*MVSSKVSGSDSFMR
Trigger: CCTCATGAAGCTGTCCGAGCCACTCACCTTTGACGAGACCATCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACTTTCCCGATGGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS GCA 90 bp CTTCAAGGGCAGAAGGGACAAGATCTGCGCAGCCACTGCGTCTGGTaGCACAGGACTTATTTTCAAATCATCCAAGCCGAAGAGAGACCG +
Preference number: 5 (lower is better)
Translates to: LQGQKGQDLRSHCVW*HRTYFQIIQAEERP
Trigger: CGGTCTCTCTTCGGCTTGGATGATTTGAAAATAAGTCCTGTGGCACCAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCTGCCCTTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp AGCAGTAAAGCTGATACTCGCATCCAACATGGCCACACAGGAGTCCAGGGAAGGCATTGCCCAGCCGCTTaGGCTTGTACTTGCTGTGAT +
Preference number: 5 (lower is better)
Translates to: SSKADTRIQHGHTGVQGRHCPAA*ACTCCD
Trigger: ATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAATG...CCTTCCCTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp TTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTAGGGTGGTGGCAGGGAAACATTGCCCAGCCGCTTaGGCTTGTACTTGCTGTGAT +
Preference number: 5 (lower is better)
Translates to: LPVLAGTLRRKSRVVAGKHCPAA*ACTCCD
Trigger: ATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAATG...TTTCCCTGCCACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp CGTTTCAGCCCCAAAGTCCAGAGGTCAGGGGCTTTAGCAGCAAGCCACTCCAGGCGATTCCAAAACTTGTaGCACCCACTAACTTCCACA +
Preference number: 5 (lower is better)
Translates to: RFSPKVQRSGALAASHSRRFQNL*HPLTST
Trigger: TGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCG...CCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp GCTGCCCCAACTGGTGTTCGATGGCTTTGCATGAGAGCTTGCCTGTGTTGGCAGAGCCGATTCCAAAACTaGTTGCACCCACTAACTTCC +
Preference number: 5 (lower is better)
Translates to: AAPTGVRWLCMRACLCWQSRFQN*LHPLTS
Trigger: GGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCT...CTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCAGTTGGGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp AGCTTGCCTGTGTTGGCAGGCACTCTGAGGAGAAAATCTAGGGTGGTGGCAGGGAGCCGATTCCAAAACTaGTTGCACCCACTAACTTCC +
Preference number: 5 (lower is better)
Translates to: SLPVLAGTLRRKSRVVAGSRFQN*LHPLTS
Trigger: GGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCT...CCCTGCCACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp CAAGGGCAGAAGGGACAAGATCTGCGCAGCCACTGCGTCTCCATCTaGTGCCACAGGACTTATTTTCAAATCATCCAAGCCGAAGAGAGA +
Preference number: 5 (lower is better)
Translates to: QGQKGQDLRSHCVSI*CHRTYFQIIQAEER
Trigger: TCTCTCTTCGGCTTGGATGATTTGAAAATAAGTCCTGTGGCACCAGATGGAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCTGCCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS CCA 90 bp ACCCCGTCGCATCGAGCTGTTAGTTCAATACACTTGAAAGATGAATaGCACCTGTACTTCCCAGAGCAGTCGAAGTGGATGCCCAGACCG +
Preference number: 5 (lower is better)
Translates to: TPSHRAVSSIHLKDE*HLYFPEQSKWMPRP
Trigger: CGGTCTGGGCATCCACTTCGACTGCTCTGGGAAGTACAGGTGCCATTCATCTTTCAAGTGTATTGAACTAACAGCTCGATGCGACGGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp CGTTTCAGCCCCAAAGTCCAGAGGTCAGGGGCTTTAGCAGCAAGCCACTCCAGGTACACGTCCCTGTGGTaGCAGATCTTGTTTGAAATT +
Preference number: 5 (lower is better)
Translates to: RFSPKVQRSGALAASHSRYTSLW*QILFEI
Trigger: AATTTCAAACAAGATCTGCAACCACAGGGACGTGTA...CCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp AAGTTCCCCACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTCGATTCCAAAACTTGTaGCACCCACTAACTTCCACA +
Preference number: 5 (lower is better)
Translates to: KFPTPGTSSGKETIGWRSRFQNL*HPLTST
Trigger: TGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCG...AGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp ACTCCCGGAACCAGCTCTGGGAAGGAGACGATTGGGTGGAGATCTGAGATCTGGCGATTCCAAAACTTGTaGCACCCACTAACTTCCACA +
Preference number: 5 (lower is better)
Translates to: TPGTSSGKETIGWRSEIWRFQNL*HPLTST
Trigger: TGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCG...CCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS TCA 90 bp TGCAGTCGGAGACCCCGTCGCATCGAGCTGTTAGTTCAATACACTTaGAAGATGAATGGCACCTGTACTTCCCAGAGCAGTCGAAGTGGA +
Preference number: 5 (lower is better)
Translates to: CSRRPRRIELLVQYT*KMNGTCTSQSSRSG
Trigger: TCCACTTCGACTGCTCTGGGAAGTACAGGTGCCATTCATCTTTCAAGTGTATTGAACTAACAGCTCGATGCGACGGGGTCTCCGACTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp TGGCTCGGACAGCTTCATGAGGGCTATGTCATTGCCCAGCCGCTTTaGCTTGTACTTGCTGTGATAGATGATTTTCTCCACCAGATGGGA +
Preference number: 5 (lower is better)
Translates to: WLGQLHEGYVIAQPL*LVLAVIDDFLHQMG
Trigger: TCCCATCTGGTGGAGAAAATCATCTATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAATGACATAGCCCTCATGAAGCTGTCCGAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp GCACAGAGCATGGAGGGAGAGATGATACCACCATACACGTCCCTGTaGTTGCAGATCTTGTTTGAAATTAAAGGGACAGCCGCGTGGTTC +
Preference number: 5 (lower is better)
Translates to: AQSMEGEMIPPYTSL*LQILFEIKGTAAWF
Trigger: GAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCATCTCTCCCTCCATGCTCTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 90 bp AAACTTCAAGGGCAGAAGGGACAAGATCTGCGCAGCCACTGCGTCTaGTGCCACAGGACTTATTTTCAAATCATCCAAGCCGAAGAGAGA +
Preference number: 5 (lower is better)
Translates to: KLQGQKGQDLRSHCV*CHRTYFQIIQAEER
Trigger: TCTCTCTTCGGCTTGGATGATTTGAAAATAAGTCCTGTGGCACCAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCTGCCCTTGAAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp GACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAAAACAGCATTGCCCAGCCGCTTaGGCTTGTACTTGCTGTGAT +
Preference number: 5 (lower is better)
Translates to: DTFQKGGIRQAPNPVRKQHCPAA*ACTCCD
Trigger: ATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAATG...CTGTTTTCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp GAGAAAACAGTGAATCAGTCACAGACCAAGTTCCCCACTCCCGGAACCAGCTCTAGCCGATTCCAAAACTaGTTGCACCCACTAACTTCC +
Preference number: 5 (lower is better)
Translates to: EKTVNQSQTKFPTPGTSSSRFQN*LHPLTS
Trigger: GGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCT...AGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTGACTGATTCACTGTTTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp GCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGGTTGCAGATCTTGTTaGAAATTAAAGGGACAGCCG +
Preference number: 5 (lower is better)
Translates to: ATQRDTFQKGGIRQAPNPGCRSC*KLKGQP
Trigger: CGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACC...AGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp GACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTGAGAAAACAGAGCCGATTCCAAAACTaGTTGCACCCACTAACTTCC +
Preference number: 5 (lower is better)
Translates to: DTFQKGGIRQAPNPVRKQSRFQN*LHPLTS
Trigger: GGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCT...CTGTTTTCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp GCTACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTTACACGTCCCTGTGGTaGCAGATCTTGTTTGAAATT +
Preference number: 5 (lower is better)
Translates to: ATQRDTFQKGGIRQAPNPYTSLW*QILFEI
Trigger: AATTTCAAACAAGATCTGCAACCACAGGGACGTGTA...AGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp TACACAAAGGGACACCTTCCAGAAGGGAGGAATTCGTCAAGCACCAAATCCTGTTACACGTCCCTGTGGTaGCAGATCTTGTTTGAAATT +
Preference number: 5 (lower is better)
Translates to: YTKGHLPEGRNSSSTKSCYTSLW*QILFEI
Trigger: AATTTCAAACAAGATCTGCAACCACAGGGACGTGTA...ACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS-3UTR CAA 90 bp GGCTCTAATCTGGATAGGGTTGAGTCAAAGTACAATGGCTATGTGTGTACAAAATACACGTCCCTGTGGTaGCAGATCTTGTTTGAAATT +
Preference number: 5 (lower is better)
Translates to: GSNLDRVESKYNGYVCTKYTSLW*QILFEI
Trigger: AATTTCAAACAAGATCTGCAACCACAGGGACGTGTA...TTTTGTACACACATAGCCATTGTACTTTGACTCAACCCTATCCAGATTAGAGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
CDS CAA 72 bp GGAGCACATGGTCCTCCACGCAGCAGCTGTGAACACTaGGAGCGCCGCTCTTTGGCCGCTCACCCGCACGCA +
Preference number: 6 (lower is better)
Translates to: GAHGPPRSSCEH*ERRSLAAHPHA
Trigger: TGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCATGTGCTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp GAGCACATGGTCCTCCACGCAGCAGCTGTGAACACTTaGAGCGCCGCTCTTTGGCCGCTCACCCGCACGCAT +
Preference number: 6 (lower is better)
Translates to: EHMVLHAAAVNT*SAALWPLTRTH
Trigger: ATGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCATGTGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 72 bp CCACGCAGCAGCTGTGAACACTTGGAGCGCCGCTCTTaGGCCGCTCACCCGCACGCATCGGTACTCATCCTC +
Preference number: 6 (lower is better)
Translates to: PRSSCEHLERRS*AAHPHASVLIL
Trigger: GAGGATGAGTACCGATGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 90 bp CCAGTCATCGGAGCACATGGTCCTCCACGCAGCAGCTGTGAACACTaGGAGCGCCGCTCTTTGGCCGCTCACCCGCACGCATCGGTACTC +
Preference number: 6 (lower is better)
Translates to: PVIGAHGPPRSSCEH*ERRSLAAHPHASVL
Trigger: GAGTACCGATGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS TCA 72 bp AGTCATCGGAGCACATGGTCCTCCACGCAGCAGCTGTaGACACTTGGAGCGCCGCTCTTTGGCCGCTCACCC +
Preference number: 6 (lower is better)
Translates to: SHRSTWSSTQQL*TLGAPLFGRSP
Trigger: GGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCATGTGCTCCGATGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp CACGCAGCAGCTGTGAACACTTGGAGCGCCGCTCTTTaGCCGCTCACCCGCACGCATCGGTACTCATCCTCT +
Preference number: 6 (lower is better)
Translates to: HAAAVNTWSAAL*PLTRTHRYSSS
Trigger: AGAGGATGAGTACCGATGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 90 bp CATGGTCCTCCACGCAGCAGCTGTGAACACTTGGAGCGCCGCTCTTaGGCCGCTCACCCGCACGCATCGGTACTCATCCTCTGCGTTCTT +
Preference number: 6 (lower is better)
Translates to: HGPPRSSCEHLERRS*AAHPHASVLILCVL
Trigger: AAGAACGCAGAGGATGAGTACCGATGCGTGCGGGTGAGCGGCCAAAGAGCGGCGCTCCAAGTGTTCACAGCTGCTGCGTGGAGGACCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS GCA 72 bp GCCGAAGAGAGACCGGAAGGAGAAGGGAGCTTCGGCTaGCGGAGGGTCATTCTCCCCCATGGTGACTATCTC +
Preference number: 6 (lower is better)
Translates to: AEERPEGEGSFG*RRVILPHGDYL
Trigger: GAGATAGTCACCATGGGGGAGAATGACCCTCCGGCAGCCGAAGCTCCCTTCTCCTTCCGGTCTCTCTTCGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114549.4
CDS TCA 72 bp GGAGGCGTCACCTCCATCCTCTGTGGCTCCCCATCCTaGGGTCCAGCACAGTTTCCCATCGGGAAAGTTCTC +
Preference number: 6 (lower is better)
Translates to: GGVTSILCGSPS*GPAQFPIGKVL
Trigger: GAGAACTTTCCCGATGGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACAGAGGATGGAGGTGACGCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp CTCGTGCCACAGGCTGAGCACTTCAAGGTGACCACGTaGCCTGAGGTGCAGCCTTCCCTCATGTACACAGAG +
Preference number: 6 (lower is better)
Translates to: LVPQAEHFKVTT*PEVQPSLMYTE
Trigger: CTCTGTGTACATGAGGGAAGGCTGCACCTCAGGCCACGTGGTCACCTTGAAGTGCTCAGCCTGTGGCACGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS GCA 72 bp AATGGCACCTGTACTTCCCAGAGCAGTCGAAGTGGATaGCCAGACCGATGGCCAGCGCCAGTATCAAGGCGA +
Preference number: 6 (lower is better)
Translates to: NGTCTSQSSRSG*PDRWPAPVSRR
Trigger: TCGCCTTGATACTGGCGCTGGCCATCGGTCTGGGCATCCACTTCGACTGCTCTGGGAAGTACAGGTGCCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp GATGAATGGCACCTGTACTTCCCAGAGCAGTCGAAGTaGATGCCCAGACCGATGGCCAGCGCCAGTATCAAG +
Preference number: 6 (lower is better)
Translates to: DEWHLYFPEQSK*MPRPMASASIK
Trigger: CTTGATACTGGCGCTGGCCATCGGTCTGGGCATCCACTTCGACTGCTCTGGGAAGTACAGGTGCCATTCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp GCGCATCCACTCTTAGGTGGTCTGAGCTCACATAGCTaGGAAACCCCAGCTGGGCACAGGCAATCTTGGCAT +
Preference number: 6 (lower is better)
Translates to: AHPLLGGLSSHS*ETPAGHRQSWH
Trigger: ATGCCAAGATTGCCTGTGCCCAGCTGGGGTTTCCCAGCTATGTGAGCTCAGACCACCTAAGAGTGGATGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp TCAGGGACACAAGACCCACCTGGACAGTCCAGGACTTaGGGTGGTACAGGTCATAAACACAGTGTGCCGCAG +
Preference number: 6 (lower is better)
Translates to: SGTQDPPGQSRT*GGTGHKHSVPQ
Trigger: CTGCGGCACACTGTGTTTATGACCTGTACCACCCCAAGTCCTGGACTGTCCAGGTGGGTCTTGTGTCCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 72 bp TTCTCCCCCATGGTGACTATCTCAGGGCCTCTGATGTaGGGTTCCGGCTCCACCTCCACCATTTCTGAAGCG +
Preference number: 6 (lower is better)
Translates to: FSPMVTISGPLM*GSGSTSTISEA
Trigger: CGCTTCAGAAATGGTGGAGGTGGAGCCGGAACCCAACATCAGAGGCCCTGAGATAGTCACCATGGGGGAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114549.4
CDS CAA 90 bp CCTGAGGTCCAGCACAGTTTCCCATCGGGAAAGTTCTCTTCAGAGTaGGGCAGACAGATGGGCTGGATGGTCTCGTCAAAGGTGAGTGGC +
Preference number: 6 (lower is better)
Translates to: PEVQHSFPSGKFSSE*GRQMGWMVSSKVSG
Trigger: GCCACTCACCTTTGACGAGACCATCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACTTTCCCGATGGGAAACTGTGCTGGACCTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS GCA 72 bp CCAGGACTTGGGGTGGTACAGGTCATAAACACAGTGTaGCGCAGTGACGATCCACAGAGGGGTGATGATGGA +
Preference number: 6 (lower is better)
Translates to: PGLGVVQVINTV*RSDDPQRGDDG
Trigger: TCCATCATCACCCCTCTGTGGATCGTCACTGCGGCACACTGTGTTTATGACCTGTACCACCCCAAGTCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp CATAGCTGGGAAACCCCAGCTGGGCACAGGCAATCTTaGCATAGTGGCTTTTCCAGTCATCGGAGCACATGG +
Preference number: 6 (lower is better)
Translates to: HSWETPAGHRQS*HSGFSSHRSTW
Trigger: CCATGTGCTCCGATGACTGGAAAAGCCACTATGCCAAGATTGCCTGTGCCCAGCTGGGGTTTCCCAGCTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp TGGCCTGAGGTGCAGCCTTCCCTCATGTACACAGAGTaGTGTAACGCCGTCACCTTGTCATCTGACAAGAGG +
Preference number: 6 (lower is better)
Translates to: WPEVQPSLMYTE*CNAVTLSSDKR
Trigger: CCTCTTGTCAGATGACAAGGTGACGGCGTTACACCACTCTGTGTACATGAGGGAAGGCTGCACCTCAGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp GGAAAGTTCTCTTCAGAGTTGGGCAGACAGATGGGCTaGATGGTCTCGTCAAAGGTGAGTGGCTCGGACAGC +
Preference number: 6 (lower is better)
Translates to: GKFSSELGRQMG*MVSSKVSGSDS
Trigger: GCTGTCCGAGCCACTCACCTTTGACGAGACCATCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACTTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS TCA 72 bp GTAACGCCGTCACCTTGTCATCTGACAAGAGGTGATTaGTGGACACGAAGTCGCCCTGGAACTGCTCCTCCA +
Preference number: 6 (lower is better)
Translates to: VTPSPCHLTRGD*WTRSRPGTAPP
Trigger: TGGAGGAGCAGTTCCAGGGCGACTTCGTGTCCATCAATCACCTCTTGTCAGATGACAAGGTGACGGCGTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS TCA 72 bp TGGTGTAACGCCGTCACCTTGTCATCTGACAAGAGGTaGTTGATGGACACGAAGTCGCCCTGGAACTGCTCC +
Preference number: 6 (lower is better)
Translates to: WCNAVTLSSDKR*LMDTKSPWNCS
Trigger: GGAGCAGTTCCAGGGCGACTTCGTGTCCATCAATCACCTCTTGTCAGATGACAAGGTGACGGCGTTACACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp GGGCAGAAGGGACAAGATCTGCGCAGCCACTGCGTCTaGTGCCACAGGACTTATTTTCAAATCATCCAAGCC +
Preference number: 6 (lower is better)
Translates to: GQKGQDLRSHCV*CHRTYFQIIQA
Trigger: GGCTTGGATGATTTGAAAATAAGTCCTGTGGCACCAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237740.2
CDS CAA 90 bp AGACTCCAGGCTTGTTCACTTCAGCACAGCCGATTCCAAAACTTGTaGCACCCACTAACTTCCACAGTCTCCTCTCCTGGCACACCAGGG +
Preference number: 6 (lower is better)
Translates to: RLQACSLQHSRFQNL*HPLTSTVSSPGTPG
Trigger: CCCTGGTGTGCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCTGTGCTGAAGTGAACAAGCCTGGAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS TCA 72 bp TGCCCAGCCGCTTTGGCTTGTACTTGCTGTGATAGATaGTTTTCTCCACCAGATGGGAGGGCACAGGACTGT +
Preference number: 6 (lower is better)
Translates to: CPAALACTCCDR*FSPPDGRAQDC
Trigger: ACAGTCCTGTGCCCTCCCATCTGGTGGAGAAAATCATCTATCACAGCAAGTACAAGCCAAAGCGGCTGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS GCA 72 bp CTTCAAGGGCAGAAGGGACAAGATCTGCGCAGCCACTaGGTCTCCATCTGGTGCCACAGGACTTATTTTCAA +
Preference number: 6 (lower is better)
Translates to: LQGQKGQDLRSH*VSIWCHRTYFQ
Trigger: TTGAAAATAAGTCCTGTGGCACCAGATGGAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCTGCCCTTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS CCA 72 bp TTGCAGATCTTGTTTGAAATTAAAGGGACAGCCGCGTaGTTCAGGACAGGGGAGGCGTCACCTCCATCCTCT +
Preference number: 6 (lower is better)
Translates to: LQILFEIKGTAA*FRTGEASPPSS
Trigger: AGAGGATGGAGGTGACGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 90 bp GAGGGAGAGATGATACCACCATACACGTCCCTGTGGTTGCAGATCTaGTTTGAAATTAAAGGGACAGCCGCGTGGTTCAGGACAGGGGAG +
Preference number: 6 (lower is better)
Translates to: EGEMIPPYTSLWLQI*FEIKGTAAWFRTGE
Trigger: CTCCCCTGTCCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCATCTCTCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 90 bp TTGCAGTCGGAGACCCCGTCGCATCGAGCTGTTAGTTCAATACACTaGAAAGATGAATGGCACCTGTACTTCCCAGAGCAGTCGAAGTGG +
Preference number: 6 (lower is better)
Translates to: LQSETPSHRAVSSIH*KDEWHLYFPEQSKW
Trigger: CCACTTCGACTGCTCTGGGAAGTACAGGTGCCATTCATCTTTCAAGTGTATTGAACTAACAGCTCGATGCGACGGGGTCTCCGACTGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 90 bp CAGAGCATGGAGGGAGAGATGATACCACCATACACGTCCCTGTGGTaGCAGATCTTGTTTGAAATTAAAGGGACAGCCGCGTGGTTCAGG +
Preference number: 6 (lower is better)
Translates to: QSMEGEMIPPYTSLW*QILFEIKGTAAWFR
Trigger: CCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCATCTCTCCCTCCATGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS GCA 72 bp GGACAAGATCTGCGCAGCCACTGCGTCTCCATCTGGTaGCACAGGACTTATTTTCAAATCATCCAAGCCGAA +
Preference number: 6 (lower is better)
Translates to: GQDLRSHCVSIW*HRTYFQIIQAE
Trigger: TTCGGCTTGGATGATTTGAAAATAAGTCCTGTGGCACCAGATGGAGACGCAGTGGCTGCGCAGATCTTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
CDS GCA 72 bp CAGAAGGGACAAGATCTGCGCAGCCACTGCGTCTGGTaGCACAGGACTTATTTTCAAATCATCCAAGCCGAA +
Preference number: 6 (lower is better)
Translates to: QKGQDLRSHCVW*HRTYFQIIQAE
Trigger: TTCGGCTTGGATGATTTGAAAATAAGTCCTGTGGCACCAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237740.2
CDS GCA 72 bp CTTCAAGGGCAGAAGGGACAAGATCTGCGCAGCCACTaGGTCTGGTGCCACAGGACTTATTTTCAAATCATC +
Preference number: 6 (lower is better)
Translates to: LQGQKGQDLRSH*VWCHRTYFQII
Trigger: GATGATTTGAAAATAAGTCCTGTGGCACCAGACGCAGTGGCTGCGCAGATCTTGTCCCTTCTGCCCTTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237740.2
CDS CAA 72 bp GCTTGTTCACTTCAGCACAGCCGATTCCAAAACTTGTaGCACCCACTAACTTCCACAGTCTCCTCTCCTGGC +
Preference number: 6 (lower is better)
Translates to: ACSLQHSRFQNL*HPLTSTVSSPG
Trigger: GCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCTGTGCTGAAGTGAACAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 90 bp TATAGACTCCAGGCTTGTTCACTTCAGCACAGCCGATTCCAAAACTaGTTGCACCCACTAACTTCCACAGTCTCCTCTCCTGGCACACCA +
Preference number: 6 (lower is better)
Translates to: YRLQACSLQHSRFQN*LHPLTSTVSSPGTP
Trigger: TGGTGTGCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCTGTGCTGAAGTGAACAAGCCTGGAGTCTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 72 bp GAGACCCCGTCGCATCGAGCTGTTAGTTCAATACACTaGAAAGATGAATGGCACCTGTACTTCCCAGAGCAG +
Preference number: 6 (lower is better)
Translates to: ETPSHRAVSSIH*KDEWHLYFPEQ
Trigger: CTGCTCTGGGAAGTACAGGTGCCATTCATCTTTCAAGTGTATTGAACTAACAGCTCGATGCGACGGGGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 72 bp TACCACCATACACGTCCCTGTGGTTGCAGATCTTGTTaGAAATTAAAGGGACAGCCGCGTGGTTCAGGACAG +
Preference number: 6 (lower is better)
Translates to: YHHTRPCGCRSC*KLKGQPRGSGQ
Trigger: CTGTCCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 72 bp GAGGGAGAGATGATACCACCATACACGTCCCTGTGGTaGCAGATCTTGTTTGAAATTAAAGGGACAGCCGCG +
Preference number: 6 (lower is better)
Translates to: EGEMIPPYTSLW*QILFEIKGTAA
Trigger: CGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCATCTCTCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 72 bp CAGGCTTGTTCACTTCAGCACAGCCGATTCCAAAACTaGTTGCACCCACTAACTTCCACAGTCTCCTCTCCT +
Preference number: 6 (lower is better)
Translates to: QACSLQHSRFQN*LHPLTSTVSSP
Trigger: AGGAGAGGAGACTGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCTGTGCTGAAGTGAACAAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp CAGCTTCATGAGGGCTATGTCATTGCCCAGCCGCTTTaGCTTGTACTTGCTGTGATAGATGATTTTCTCCAC +
Preference number: 6 (lower is better)
Translates to: QLHEGYVIAQPL*LVLAVIDDFLH
Trigger: GTGGAGAAAATCATCTATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAATGACATAGCCCTCATGAAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CAA 72 bp ATGATACCACCATACACGTCCCTGTGGTTGCAGATCTaGTTTGAAATTAAAGGGACAGCCGCGTGGTTCAGG +
Preference number: 6 (lower is better)
Translates to: MIPPYTSLWLQI*FEIKGTAAWFR
Trigger: CCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp ATGGAGGGAGAGATGATACCACCATACACGTCCCTGTaGTTGCAGATCTTGTTTGAAATTAAAGGGACAGCC +
Preference number: 6 (lower is better)
Translates to: MEGEMIPPYTSL*LQILFEIKGTA
Trigger: GGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCATCTCTCCCTCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2
CDS CCA 72 bp CATCGAGCTGTTAGTTCAATACACTTGAAAGATGAATaGCACCTGTACTTCCCAGAGCAGTCGAAGTGGATG +
Preference number: 6 (lower is better)
Translates to: HRAVSSIHLKDE*HLYFPEQSKWM
Trigger: CATCCACTTCGACTGCTCTGGGAAGTACAGGTGCCATTCATCTTTCAAGTGTATTGAACTAACAGCTCGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024833.13
ENSMUST00000114549.4
ENSMUST00000236793.2
ENSMUST00000237740.2