Pregenerated sensors for TMPRSS11F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048764Ensembl transcript IDs: ENSMUST00000116553.9
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGGCTCACTAACACTATGCCCACCACCAGGCTTTGCTGGGACACTCACTATTACCTCTGCTCGGTCAGCTaGAAATGCAGGTTAGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: GLTNTMPTTRLCWDTHYYLCSVS*KCRLEF Trigger: GAACTCTAACCTGCATTTGCAGCTGACCGAGCAGAG...GTAATAGTGAGTGTCCCAGCAAAGCCTGGTGGTGGGCATAGTGTTAGTGAGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR CCA 90 bp | GGGCTCACTAACACTATGCCCACCACCAGGCTTTGCTGGGACACTCACTATTACCTGCTTCGTGGGCTATaGCCATCACTCACAACAGTA | + |
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Preference number: 2 (lower is better) Translates to: GLTNTMPTTRLCWDTHYYLLRGL*PSLTTV Trigger: TACTGTTGTGAGTGATGGCCATAGCCCACGAAGCAG...GTAATAGTGAGTGTCCCAGCAAAGCCTGGTGGTGGGCATAGTGTTAGTGAGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR CCA 90 bp | GGCAAGACACTGCTAAGGAGTAAGCCAGAAATGATTCTTATCAACTCAATATGCAGGCATCCTGTTCCATaGGCTGTGACTGTAGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: GKTLLRSKPEMILINSICRHPVP*AVTVAH Trigger: GTGAGCTACAGTCACAGCCCATGGAACAGGATGCCT...GCATATTGAGTTGATAAGAATCATTTCTGGCTTACTCCTTAGCAGTGTCTTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR GCA 90 bp | GCATATACTTTGCATATGGCAGAGACAAAACTCGTGAGCCACTGGCCTTGCTCAGAGTTCAAGTTTTACTaGAGGTTACACACTCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: AYTLHMAETKLVSHWPCSEFKFY*RLHTPS Trigger: TGAAGGAGTGTGTAACCTGCAGTAAAACTTGAACTC...TGAGCAAGGCCAGTGGCTCACGAGTTTTGTCTCTGCCATATGCAAAGTATATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR CCA 90 bp | GGCAAGACACTGCTAAGGAGTAAGCCAGAAATGATTCTTATCAACTCAATATGCTTACGAGTGAGATGCTaGTGCTGCCTGTCATTTGCT | + |
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Preference number: 2 (lower is better) Translates to: GKTLLRSKPEMILINSICLRVRC*CCLSFA Trigger: AGCAAATGACAGGCAGCACCAGCATCTCACTCGTAA...GCATATTGAGTTGATAAGAATCATTTCTGGCTTACTCCTTAGCAGTGTCTTGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR GCA 90 bp | GGCAAGACACTGCTAAGGAGTAAGCCAGAAATGATTCTTATCAACTCAATATGCGTGAGATGCTGGTGCTaGCTGTCATTTGCTAAGTTT | + |
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Preference number: 2 (lower is better) Translates to: GKTLLRSKPEMILINSICVRCWC*LSFAKF Trigger: AAACTTAGCAAATGACAGGCAGCACCAGCATCTCAC...GCATATTGAGTTGATAAGAATCATTTCTGGCTTACTCCTTAGCAGTGTCTTGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR GCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTCCTTTACGAGTGAGATaGTGGTGCTGCCTGTCATTT | + |
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Preference number: 2 (lower is better) Translates to: NKGPFGRQICFPISTKSSPLRVR*WCCLSF Trigger: AAATGACAGGCAGCACCAGCATCTCACTCGTAAAGG...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR GCA 90 bp | AAAGTTGTGAGTGCCGTGTCACTAACTATATTTCAGATTATTCTGCTTTCATCACGAGTGAGATGCTGGTaGTGCCTGTCATTTGCTAAG | + |
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Preference number: 2 (lower is better) Translates to: KVVSAVSLTIFQIILLSSRVRCW*CLSFAK Trigger: CTTAGCAAATGACAGGCAGCACCAGCATCTCACTCG...TGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGCACTCACAACTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR CCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTAGAGTCCTTCACATCTaGCAGAAGCACTCATTTACC | + |
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Preference number: 2 (lower is better) Translates to: NKGPFGRQICFPISTKSSRVLHI*QKHSFT Trigger: GGTAAATGAGTGCTTCTGCCAGATGTGAAGGACTCT...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR GCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTTCGGTCAGCTGCAAATaGAGGTTAGAGTTCAAGTTT | + |
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Preference number: 2 (lower is better) Translates to: NKGPFGRQICFPISTKSSSVSCK*RLEFKF Trigger: AAACTTGAACTCTAACCTGCATTTGCAGCTGACCGA...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR TCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTCTTCATTGTAGCAGTTaGATGTCCAGTTATGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: NKGPFGRQICFPISTKSSLHCSS*MSSYEF Trigger: GAACTCATAACTGGACATTCAACTGCTACAATGAAG...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR TCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTAAAATGCTTGTGTCTTaGATCCTTAAGGAAGATGCT | + |
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Preference number: 2 (lower is better) Translates to: NKGPFGRQICFPISTKSSKMLVS*ILKEDA Trigger: AGCATCTTCCTTAAGGATTCAAGACACAAGCATTTT...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR CCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTCTCATGTTATTAAATTaGTCTCCATCTGAAGAGTCC | + |
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Preference number: 2 (lower is better) Translates to: NKGPFGRQICFPISTKSSLMLLN*SPSEES Trigger: GGACTCTTCAGATGGAGACCAATTTAATAACATGAG...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR TCA 90 bp | ATATTTGGAAAACACGTTCCATCAAAAGTTGTGAGTGCCGTGTCACTAACTATACAGCTCTTTATATCCTaGGGGAAGCTATTTATGTTT | + |
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Preference number: 2 (lower is better) Translates to: IFGKHVPSKVVSAVSLTIQLFIS*GKLFMF Trigger: AAACATAAATAGCTTCCCTCAGGATATAAAGAGCTG...TATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR TCA 72 bp | AAGCATATACTTTGCATATGGCAGAGACAAAACTCGTaGGCCACTGGCCTTGCTCAGACAATATGGGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: KHILCIWQRQNS*ATGLAQTIWAH Trigger: GTGAGCCCATATTGTCTGAGCAAGGCCAGTGGCTCACGAGTTTTGTCTCTGCCATATGCAAAGTATATGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR CAA 90 bp | AAAGTTGTGAGTGCCGTGTCACTAACTATATTTCAGATTATTCTGCTTTCATCAGGTGCTGCCTGTCATTaGCTAAGTTTTCTTCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: KVVSAVSLTIFQIILLSSGAACH*LSFLPS Trigger: AGAAGGAAGAAAACTTAGCAAATGACAGGCAGCACC...TGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGCACTCACAACTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR TCA 72 bp | AAAAAGTCACCTCATGTTATTAAATTGGTCTCCATCTaGAGAGTCCTTCACATCTGGCAGAAGCACTCATTT | + |
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Preference number: 3 (lower is better) Translates to: KKSPHVIKLVSI*RVLHIWQKHSF Trigger: AAATGAGTGCTTCTGCCAGATGTGAAGGACTCTTCAGATGGAGACCAATTTAATAACATGAGGTGACTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR CCA 72 bp | AGTTTATGCACAAAAAGTCACCTCATGTTATTAAATTaGTCTCCATCTGAAGAGTCCTTCACATCTGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: SLCTKSHLMLLN*SPSEESFTSGR Trigger: TCTGCCAGATGTGAAGGACTCTTCAGATGGAGACCAATTTAATAACATGAGGTGACTTTTTGTGCATAAACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR-3UTR CAA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTAGCAAGAGCTACCATTaGCTTATGTCTAAACATTTC | + |
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Preference number: 3 (lower is better) Translates to: NKGPFGRQICFPISTKSSSKSYH*LMSKHF Trigger: GAAATGTTTAGACATAAGCAAATGGTAGCTCTTGCT...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR TCA 72 bp | TTCATTGAGATGCAACGTAGAGCACCTCAGAGACTTTaGAAAGGTTATATTAATCTCGGTTACAAATGCTAC | + |
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Preference number: 3 (lower is better) Translates to: FIEMQRRAPQRL*KGYINLGYKCY Trigger: GTAGCATTTGTAACCGAGATTAATATAACCTTTTCAAAGTCTCTGAGGTGCTCTACGTTGCATCTCAATGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR GCA 72 bp | AATATTTGGAAAACACGTTCCATCAAAAGTTGTGAGTaGCGTGTCACTAACTATATTTCAGATTATTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: NIWKTRSIKSCE*RVTNYISDYSA Trigger: AGCAGAATAATCTGAAATATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR GCA 72 bp | AAAGGAAAGAATAAGGGTCCTTTTGGTAGACAGATTTaGTTTCCCATATCTACCAAAAGCAGTCATTTATTT | + |
|
Preference number: 3 (lower is better) Translates to: KGKNKGPFGRQI*FPISTKSSHLF Trigger: AAATAAATGACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATTCTTTCCTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | GGGCTCACTAACACTATGCCCACCACCAGGCTTTGCTGGGACACTCACTATTACGCTGTTTCCCTCCCTTaGACAATGCGTTCAGTAGAA | + |
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Preference number: 4 (lower is better) Translates to: GLTNTMPTTRLCWDTHYYAVSLP*TMRSVE Trigger: TTCTACTGAACGCATTGTCCAAGGGAGGGAAACAGC...GTAATAGTGAGTGTCCCAGCAAAGCCTGGTGGTGGGCATAGTGTTAGTGAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | AGGAAGATGCTAGCTGACATTTGTAAGATGAGTCCTGGAGCTCTATGCATTATACCAGCCCCAATGAGCTaGAGGCTAGCCTGCCATGGC | + |
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Preference number: 4 (lower is better) Translates to: RKMLADICKMSPGALCIIPAPMS*RLACHG Trigger: GCCATGGCAGGCTAGCCTCCAGCTCATTGGGGCTGG...TATAATGCATAGAGCTCCAGGACTCATCTTACAAATGTCAGCTAGCATCTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | ATCTGCAGGCATCCTGTTCCATGGGCTGTGACTGTAGCTCACAACTCTCTAAGTAGCGCACAGCATCCCTaGAGTTATCAAGCCATCGTA | + |
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Preference number: 4 (lower is better) Translates to: ICRHPVPWAVTVAHNSLSSAQHP*SYQAIV Trigger: TACGATGGCTTGATAACTCCAGGGATGCTGTGCGCT...ACTTAGAGAGTTGTGAGCTACAGTCACAGCCCATGGAACAGGATGCCTGCAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | AGGAAGATGCTAGCTGACATTTGTAAGATGAGTCCTGGAGCTCTATGCATTATAAGTGTGGCTCCACACTaGTGGCCAGCCCCAATGAGC | + |
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Preference number: 4 (lower is better) Translates to: RKMLADICKMSPGALCIISVAPH*WPAPMS Trigger: GCTCATTGGGGCTGGCCATCAGTGTGGAGCCACACT...TATAATGCATAGAGCTCCAGGACTCATCTTACAAATGTCAGCTAGCATCTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | GGGCTCACTAACACTATGCCCACCACCAGGCTTTGCTGGGACACTCACTATTACAACGTCGGAATATCCTaGACATCATTCTCTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: GLTNTMPTTRLCWDTHYYNVGIS*TSFSRS Trigger: AGATCGAGAGAATGATGTCCAGGATATTCCGACGTT...GTAATAGTGAGTGTCCCAGCAAAGCCTGGTGGTGGGCATAGTGTTAGTGAGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | ATCTGCAGGCATCCTGTTCCATGGGCTGTGACTGTAGCTCACAACTCTCTAAGTTGGGTATGCTGTTTGTaGAAATTCAACTGGTGCGTA | + |
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Preference number: 4 (lower is better) Translates to: ICRHPVPWAVTVAHNSLSWVCCL*KFNWCV Trigger: TACGCACCAGTTGAATTTTCACAAACAGCATACCCA...ACTTAGAGAGTTGTGAGCTACAGTCACAGCCCATGGAACAGGATGCCTGCAGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTGAGGCTAGCCTGCCATaGCCACTCTCCTTCCATAGC | + |
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Preference number: 4 (lower is better) Translates to: NKGPFGRQICFPISTKSSEASLP*PLSFHS Trigger: GCTATGGAAGGAGAGTGGCCATGGCAGGCTAGCCTC...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR CAA 72 bp | CTATGCCACAGTTTTTGTCTGCTAAGTCAAAGTAACTaGCAAACCTCACAGCTGAGGGCAGAGGGTGAATAC | + |
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Preference number: 4 (lower is better) Translates to: LCHSFCLLSQSN*QTSQLRAEGEY Trigger: GTATTCACCCTCTGCCCTCAGCTGTGAGGTTTGCAAGTTACTTTGACTTAGCAGACAAAAACTGTGGCATAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTTCTCTGAACCACATTTaGAAACTCGACGCGGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: NKGPFGRQICFPISTKSSSLNHI*KLDAGG Trigger: ACCACCCGCGTCGAGTTTTCAAATGTGGTTCAGAGA...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTGGGAGGCAGACTCTCTaGACCACATTTGAAAACTCG | + |
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Preference number: 4 (lower is better) Translates to: NKGPFGRQICFPISTKSSGRQTL*TTFENS Trigger: CGAGTTTTCAAATGTGGTTCAGAGAGTCTGCCTCCC...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | AGGAAGATGCTAGCTGACATTTGTAAGATGAGTCCTGGAGCTCTATGCATTATACTATTTTTCCTTCCATaGATCCAGCGCACAGCATCC | + |
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Preference number: 4 (lower is better) Translates to: RKMLADICKMSPGALCIILFFLP*IQRTAS Trigger: GGATGCTGTGCGCTGGATTCATGGAAGGAAAAATAG...TATAATGCATAGAGCTCCAGGACTCATCTTACAAATGTCAGCTAGCATCTTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | AGGAAGATGCTAGCTGACATTTGTAAGATGAGTCCTGGAGCTCTATGCATTATACTATGGTTTCCACCCTaGCCTGCCGGAGTTTATTTT | + |
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Preference number: 4 (lower is better) Translates to: RKMLADICKMSPGALCIILWFPP*PAGVYF Trigger: AAAATAAACTCCGGCAGGCCAGGGTGGAAACCATAG...TATAATGCATAGAGCTCCAGGACTCATCTTACAAATGTCAGCTAGCATCTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | ATATTTGGAAAACACGTTCCATCAAAAGTTGTGAGTGCCGTGTCACTAACTATATTTTTCCAGAAGCAATaGGCTGCTGTGAGCAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: IFGKHVPSKVVSAVSLTIFFQKQ*AAVSSH Trigger: ATGGCTGCTCACAGCAGCTCATTGCTTCTGGAAAAA...TATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | GGCAAGACACTGCTAAGGAGTAAGCCAGAAATGATTCTTATCAACTCAATATGCGGCGAGGTAATAAAATaGCTTGTCATCTTCAACAAC | + |
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Preference number: 4 (lower is better) Translates to: GKTLLRSKPEMILINSICGEVIK*LVIFNN Trigger: GTTGTTGAAGATGACAAGTCATTTTATTACCTCGCC...GCATATTGAGTTGATAAGAATCATTTCTGGCTTACTCCTTAGCAGTGTCTTGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | ATATTTGGAAAACACGTTCCATCAAAAGTTGTGAGTGCCGTGTCACTAACTATATGGCAATTTCATAGATaGATCTGGGAGGCAGACTCT | + |
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Preference number: 4 (lower is better) Translates to: IFGKHVPSKVVSAVSLTIWQFHR*IWEADS Trigger: AGAGTCTGCCTCCCAGATTCATCTATGAAATTGCCA...TATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR GCA 90 bp | AGGAAGATGCTAGCTGACATTTGTAAGATGAGTCCTGGAGCTCTATGCATTATAATACATCCTTTCTGTTaGACACATCAGAACCTATGG | + |
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Preference number: 4 (lower is better) Translates to: RKMLADICKMSPGALCIIIHPFC*THQNLW Trigger: CCATAGGTTCTGATGTGTGCAACAGAAAGGATGTAT...TATAATGCATAGAGCTCCAGGACTCATCTTACAAATGTCAGCTAGCATCTTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | ATATTTGGAAAACACGTTCCATCAAAAGTTGTGAGTGCCGTGTCACTAACTATAGGCACTATCAGTAGATaGGTATCGAAACATGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: IFGKHVPSKVVSAVSLTIGTISR*VSKHEH Trigger: GTGCTCATGTTTCGATACCCATCTACTGATAGTGCC...TATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTCTGTGGTACTCTTCATaGATGATAATCTTCCCAACA | + |
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Preference number: 4 (lower is better) Translates to: NKGPFGRQICFPISTKSSLWYSS*MIIFPT Trigger: TGTTGGGAAGATTATCATCCATGAAGAGTACCACAG...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | ATATTTGGAAAACACGTTCCATCAAAAGTTGTGAGTGCCGTGTCACTAACTATAACTCCCTTGATGACCTaGTTCCATAATTTTCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: IFGKHVPSKVVSAVSLTITPLMT*FHNFLC Trigger: ACAGAGAAAATTATGGAATCAGGTCATCAAGGGAGT...TATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | ATATTTGGAAAACACGTTCCATCAAAAGTTGTGAGTGCCGTGTCACTAACTATATGTTGTTGTCTTCTTTaGTATTCGATTCGTGGGTAT | + |
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Preference number: 4 (lower is better) Translates to: IFGKHVPSKVVSAVSLTICCCLL*YSIRGY Trigger: ATACCCACGAATCGAATATCAAAGAAGACAACAACA...TATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR TCA 90 bp | GCCGTGTCACTAACTATATTTCAGATTATTCTGCTTTCATCAGCTTCCTTTAATTCCCACATCGGCTATTaGGAAGATTTCTCATCTTTT | + |
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Preference number: 4 (lower is better) Translates to: AVSLTIFQIILLSSASFNSHIGY*EDFSSF Trigger: AAAAGATGAGAAATCTTCTCAATAGCCGATGTGGGA...ATTAAAGGAAGCTGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | AATAAGGGTCCTTTTGGTAGACAGATTTGCTTTCCCATATCTACCAAAAGCAGTCTTATCTTGATAACATaGGACTTGATAAATCTACCC | + |
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Preference number: 4 (lower is better) Translates to: NKGPFGRQICFPISTKSSLILIT*DLINLP Trigger: GGGTAGATTTATCAAGTCCCATGTTATCAAGATAAG...ACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR GCA 90 bp | ATATTTGGAAAACACGTTCCATCAAAAGTTGTGAGTGCCGTGTCACTAACTATAAGAATCACCCTTACATaGATCTATTTTTCCTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: IFGKHVPSKVVSAVSLTIRITLT*IYFSFH Trigger: ATGGAAGGAAAAATAGATGCATGTAAGGGTGATTCT...TATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CCA 90 bp | GCCGTGTCACTAACTATATTTCAGATTATTCTGCTTTCATCAGCTTCCTTTAATGACAATCCATTTAGTTaGGTCTCTGTTTTTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: AVSLTIFQIILLSSASFNDNPFS*VSVFPE Trigger: TTCTGGAAAAACAGAGACCCAACTAAATGGATTGTC...ATTAAAGGAAGCTGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| 3UTR CAA 72 bp | ACCATCCAGATGAAAGAGCTAACTAACAGAGAGATATaGGGTCATTTGCATAAAAGCATATACTTTGCATAT | + |
|
Preference number: 4 (lower is better) Translates to: TIQMKELTNREI*GHLHKSIYFAY Trigger: ATATGCAAAGTATATGCTTTTATGCAAATGACCCAATATCTCTCTGTTAGTTAGCTCTTTCATCTGGATGGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CCA 90 bp | TCCACACTGATGGCCAGCCCCAATGAGCTGGAGGCTAGCCTGCCATaGCCACTCTCCTTCCATAGCTGTTTCCCTCCCTTGGACAATGCG | + |
|
Preference number: 5 (lower is better) Translates to: STLMASPNELEASLP*PLSFHSCFPPLDNA Trigger: CGCATTGTCCAAGGGAGGGAAACAGCTATGGAAGGAGAGTGGCCATGGCAGGCTAGCCTCCAGCTCATTGGGGCTGGCCATCAGTGTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CCA 90 bp | CTAGCCTGCCATGGCCACTCTCCTTCCATAGCTGTTTCCCTCCCTTaGACAATGCGTTCAGTAGAAGAGGATGCTGGTAATGGGATGTTT | + |
|
Preference number: 5 (lower is better) Translates to: LACHGHSPSIAVSLP*TMRSVEEDAGNGMF Trigger: AAACATCCCATTACCAGCATCCTCTTCTACTGAACGCATTGTCCAAGGGAGGGAAACAGCTATGGAAGGAGAGTGGCCATGGCAGGCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS GCA 90 bp | ACAGCATCCCTGGAGTTATCAAGCCATCGTATACATCCTTTCTGTTaGACACATCAGAACCTATGGTTTCCACCCTGGCCTGCCGGAGTT | + |
|
Preference number: 5 (lower is better) Translates to: TASLELSSHRIHPFC*THQNLWFPPWPAGV Trigger: AACTCCGGCAGGCCAGGGTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGATGTATACGATGGCTTGATAACTCCAGGGATGCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CCA 90 bp | CTGGGAGGCAGACTCTCTGAACCACATTTGAAAACTCGACGCGGGTaGTTAGCTGAGCTAGAGCAATGTCGTTTTCATTGGTATCTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: LGGRLSEPHLKTRRG*LAELEQCRFHWYLC Trigger: ACAGAGATACCAATGAAAACGACATTGCTCTAGCTCAGCTAACCACCCGCGTCGAGTTTTCAAATGTGGTTCAGAGAGTCTGCCTCCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS GCA 90 bp | TCCTTTCTGTTGCACACATCAGAACCTATGGTTTCCACCCTGGCCTaGCGGAGTTTATTTTGTGTAGGCCCATCATCTACAATAGACCCA | + |
|
Preference number: 5 (lower is better) Translates to: SFLLHTSEPMVSTLA*RSLFCVGPSSTIDP Trigger: TGGGTCTATTGTAGATGATGGGCCTACACAAAATAAACTCCGGCAGGCCAGGGTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS GCA 90 bp | CTCCAGGCTTGTTTGGAAGAGCACAAGATTGTCCCCAACTTACTATaGCCACAATGTACCAGATGTCCCGATTGTCATAAACCAAAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: LQACLEEHKIVPNLL*PQCTRCPDCHKPKV Trigger: GACCTTTGGTTTATGACAATCGGGACATCTGGTACATTGTGGGCATAGTAAGTTGGGGACAATCTTGTGCTCTTCCAAACAAGCCTGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | ATCTGCAGGCATCCTGTTCCATGGGCTGTGACTGTAGCTCACAACTCTCTAAGTCTTTCAATTCTTTTCTaGATTCGCTCGGCACTATCA | + |
|
Preference number: 5 (lower is better) Translates to: ICRHPVPWAVTVAHNSLSLSILF*IRSALS Trigger: TGATAGTGCCGAGCGAATCAAGAAAAGAATTGAAAG...ACTTAGAGAGTTGTGAGCTACAGTCACAGCCCATGGAACAGGATGCCTGCAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | GGCAAGACACTGCTAAGGAGTAAGCCAGAAATGATTCTTATCAACTCAATATGCCTCTCTGAACCACATTaGAAAACTCGACGCGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: GKTLLRSKPEMILINSICLSEPH*KTRRGW Trigger: CCACCCGCGTCGAGTTTTCAAATGTGGTTCAGAGAG...GCATATTGAGTTGATAAGAATCATTTCTGGCTTACTCCTTAGCAGTGTCTTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | GGCAAGACACTGCTAAGGAGTAAGCCAGAAATGATTCTTATCAACTCAATATGCAGCTGTTTCCCTCCCTaGGACAATGCGTTCAGTAGA | + |
|
Preference number: 5 (lower is better) Translates to: GKTLLRSKPEMILINSICSCFPP*DNAFSR Trigger: TCTACTGAACGCATTGTCCAAGGGAGGGAAACAGCT...GCATATTGAGTTGATAAGAATCATTTCTGGCTTACTCCTTAGCAGTGTCTTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | AGCATGTATCTATTGTTAGAGACTTACAAAGGAAAGAATAAGGGTCCTTTTGGTGTGAGCAGCCATGTGTaGCTGATGAGTGTGGCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SMYLLLETYKGKNKGPFGVSSHV*LMSVAP Trigger: TGGAGCCACACTCATCAGCAACACATGGCTGCTCAC...ACCAAAAGGACCCTTATTCTTTCCTTTGTAAGTCTCTAACAATAGATACATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CCA 90 bp | GCTAGAGCAATGTCGTTTTCATTGGTATCTCTGTGGTACTCTTCATaGATGATAATCTTCCCAACACTTCGTTTGACTAAAGGTGGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: ARAMSFSLVSLWYSS*MIIFPTLRLTKGGV Trigger: AACACCACCTTTAGTCAAACGAAGTGTTGGGAAGATTATCATCCATGAAGAGTACCACAGAGATACCAATGAAAACGACATTGCTCTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS TCA 90 bp | GAGAAGATTTCTCATCTTTTTGCTGTCAATGGGTGTGAGGCTGAATaGTGGCATACTAATAGTCAAAGGCAACTGTTTGATCTTCAGACT | + |
|
Preference number: 5 (lower is better) Translates to: EKISHLFAVNGCEAE*WHTNSQRQLFDLQT Trigger: AGTCTGAAGATCAAACAGTTGCCTTTGACTATTAGTATGCCATCATTCAGCCTCACACCCATTGACAGCAAAAAGATGAGAAATCTTCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CCA 90 bp | AGTCCTTTCAATTCTTTTCTTGATTCGCTCGGCACTATCAGTAGATaGGTATCGAAACATGAGCACTATAAGAATGTTCACTCCTTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: SPFNSFLDSLGTISR*VSKHEHYKNVHSLF Trigger: GAACAAGGAGTGAACATTCTTATAGTGCTCATGTTTCGATACCCATCTACTGATAGTGCCGAGCGAATCAAGAAAAGAATTGAAAGGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | AGGAAGATGCTAGCTGACATTTGTAAGATGAGTCCTGGAGCTCTATGCATTATATTGATAACATGGGACTaGATAAATCTACCCACTCCA | + |
|
Preference number: 5 (lower is better) Translates to: RKMLADICKMSPGALCIILITWD*INLPTP Trigger: TGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAA...TATAATGCATAGAGCTCCAGGACTCATCTTACAAATGTCAGCTAGCATCTTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS-3UTR CAA 90 bp | GGCAAGACACTGCTAAGGAGTAAGCCAGAAATGATTCTTATCAACTCAATATGCCTGGTAATGGGATGTTaGAAGATGACATTCTTATCC | + |
|
Preference number: 5 (lower is better) Translates to: GKTLLRSKPEMILINSICLVMGC*KMTFLS Trigger: GGATAAGAATGTCATCTTCAAACATCCCATTACCAG...GCATATTGAGTTGATAAGAATCATTTCTGGCTTACTCCTTAGCAGTGTCTTGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS-3UTR CAA 90 bp | AGCATGTATCTATTGTTAGAGACTTACAAAGGAAAGAATAAGGGTCCTTTTGGTTGGAAGAGCACAAGATaGTCCCCAACTTACTATGCC | + |
|
Preference number: 5 (lower is better) Translates to: SMYLLLETYKGKNKGPFGWKSTR*SPTYYA Trigger: GGCATAGTAAGTTGGGGACAATCTTGTGCTCTTCCA...ACCAAAAGGACCCTTATTCTTTCCTTTGTAAGTCTCTAACAATAGATACATGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | AAAGTTGTGAGTGCCGTGTCACTAACTATATTTCAGATTATTCTGCTTTCATCAAGACTCCAGGCTTGTTaGGAAGAGCACAAGATTGTC | + |
|
Preference number: 5 (lower is better) Translates to: KVVSAVSLTIFQIILLSSRLQAC*EEHKIV Trigger: GACAATCTTGTGCTCTTCCAAACAAGCCTGGAGTCT...TGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGCACTCACAACTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | GCCGTGTCACTAACTATATTTCAGATTATTCTGCTTTCATCAGCTTCCTTTAATGCAATGTCGTTTTCATaGGTATCTCTGTGGTACTCT | + |
|
Preference number: 5 (lower is better) Translates to: AVSLTIFQIILLSSASFNAMSFS*VSLWYS Trigger: AGAGTACCACAGAGATACCAATGAAAACGACATTGC...ATTAAAGGAAGCTGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | GCCGTGTCACTAACTATATTTCAGATTATTCTGCTTTCATCAGCTTCCTTTAATTATACATCCTTTCTGTaGCACACATCAGAACCTATG | + |
|
Preference number: 5 (lower is better) Translates to: AVSLTIFQIILLSSASFNYTSFL*HTSEPM Trigger: CATAGGTTCTGATGTGTGCAACAGAAAGGATGTATA...ATTAAAGGAAGCTGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | AGCATGTATCTATTGTTAGAGACTTACAAAGGAAAGAATAAGGGTCCTTTTGGTAGGGTCCCAAAATTGTaGTTGTCTTCTTTGATATTC | + |
|
Preference number: 5 (lower is better) Translates to: SMYLLLETYKGKNKGPFGRVPKL*LSSLIF Trigger: GAATATCAAAGAAGACAACAACAATTTTGGGACCCT...ACCAAAAGGACCCTTATTCTTTCCTTTGTAAGTCTCTAACAATAGATACATGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS-3UTR CAA 90 bp | GCCGTGTCACTAACTATATTTCAGATTATTCTGCTTTCATCAGCTTCCTTTAATTCATCTGGACTTATCTaGATAACATGGGACTTGATA | + |
|
Preference number: 5 (lower is better) Translates to: AVSLTIFQIILLSSASFNSSGLI*ITWDLI Trigger: TATCAAGTCCCATGTTATCAAGATAAGTCCAGATGA...ATTAAAGGAAGCTGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS TCA 72 bp | AGCAGCCATGTGTTGCTGATGAGTGTGGCTCCACACTaGTGGCCAGCCCCAATGAGCTGGAGGCTAGCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: SSHVLLMSVAPH*WPAPMSWRLAC Trigger: GCAGGCTAGCCTCCAGCTCATTGGGGCTGGCCATCAGTGTGGAGCCACACTCATCAGCAACACATGGCTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CCA 72 bp | ATGGCCAGCCCCAATGAGCTGGAGGCTAGCCTGCCATaGCCACTCTCCTTCCATAGCTGTTTCCCTCCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: MASPNELEASLP*PLSFHSCFPPL Trigger: CAAGGGAGGGAAACAGCTATGGAAGGAGAGTGGCCATGGCAGGCTAGCCTCCAGCTCATTGGGGCTGGCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CAA 90 bp | CACAGCATCCCTGGAGTTATCAAGCCATCGTATACATCCTTTCTGTaGCACACATCAGAACCTATGGTTTCCACCCTGGCCTGCCGGAGT | + |
|
Preference number: 6 (lower is better) Translates to: HSIPGVIKPSYTSFL*HTSEPMVSTLACRS Trigger: ACTCCGGCAGGCCAGGGTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGATGTATACGATGGCTTGATAACTCCAGGGATGCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CCA 72 bp | CATGGCCACTCTCCTTCCATAGCTGTTTCCCTCCCTTaGACAATGCGTTCAGTAGAAGAGGATGCTGGTAAT | + |
|
Preference number: 6 (lower is better) Translates to: HGHSPSIAVSLP*TMRSVEEDAGN Trigger: ATTACCAGCATCCTCTTCTACTGAACGCATTGTCCAAGGGAGGGAAACAGCTATGGAAGGAGAGTGGCCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CAA 72 bp | ACCTATGGTTTCCACCCTGGCCTGCCGGAGTTTATTTaGTGTAGGCCCATCATCTACAATAGACCCAAATCC | + |
|
Preference number: 6 (lower is better) Translates to: TYGFHPGLPEFI*CRPIIYNRPKS Trigger: GGATTTGGGTCTATTGTAGATGATGGGCCTACACAAAATAAACTCCGGCAGGCCAGGGTGGAAACCATAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CAA 72 bp | CCTGGAGTTATCAAGCCATCGTATACATCCTTTCTGTaGCACACATCAGAACCTATGGTTTCCACCCTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: PGVIKPSYTSFL*HTSEPMVSTLA Trigger: GGCCAGGGTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGATGTATACGATGGCTTGATAACTCCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS GCA 72 bp | CTGGAGTTATCAAGCCATCGTATACATCCTTTCTGTTaGACACATCAGAACCTATGGTTTCCACCCTGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: LELSSHRIHPFC*THQNLWFPPWP Trigger: AGGCCAGGGTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGATGTATACGATGGCTTGATAACTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CCA 72 bp | AGACTCTCTGAACCACATTTGAAAACTCGACGCGGGTaGTTAGCTGAGCTAGAGCAATGTCGTTTTCATTGG | + |
|
Preference number: 6 (lower is better) Translates to: RLSEPHLKTRRG*LAELEQCRFHW Trigger: CCAATGAAAACGACATTGCTCTAGCTCAGCTAACCACCCGCGTCGAGTTTTCAAATGTGGTTCAGAGAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CCA 72 bp | CGTATACATCCTTTCTGTTGCACACATCAGAACCTATaGTTTCCACCCTGGCCTGCCGGAGTTTATTTTGTG | + |
|
Preference number: 6 (lower is better) Translates to: RIHPFCCTHQNL*FPPWPAGVYFV Trigger: CACAAAATAAACTCCGGCAGGCCAGGGTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGATGTATACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS TCA 72 bp | ATCCATTTAGTTGGGTCTCTGTTTTTCCAGAAGCAATaGGCTGCTGTGAGCAGCCATGTGTTGCTGATGAGT | + |
|
Preference number: 6 (lower is better) Translates to: IHLVGSLFFQKQ*AAVSSHVLLMS Trigger: ACTCATCAGCAACACATGGCTGCTCACAGCAGCTCATTGCTTCTGGAAAAACAGAGACCCAACTAAATGGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS GCA 72 bp | TGTTTGGAAGAGCACAAGATTGTCCCCAACTTACTATaGCCACAATGTACCAGATGTCCCGATTGTCATAAA | + |
|
Preference number: 6 (lower is better) Translates to: CLEEHKIVPNLL*PQCTRCPDCHK Trigger: TTTATGACAATCGGGACATCTGGTACATTGTGGGCATAGTAAGTTGGGGACAATCTTGTGCTCTTCCAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CCA 72 bp | TATTTTTCCTTCCATGAATCCAGCGCACAGCATCCCTaGAGTTATCAAGCCATCGTATACATCCTTTCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: YFSFHESSAQHP*SYQAIVYILSV Trigger: AACAGAAAGGATGTATACGATGGCTTGATAACTCCAGGGATGCTGTGCGCTGGATTCATGGAAGGAAAAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CAA 90 bp | ATGTTCACTCCTTGTTCATCTGGACTTATCTTGATAACATGGGACTaGATAAATCTACCCACTCCAGAAGAACGTCGGAATATCCTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: MFTPCSSGLILITWD*INLPTPEERRNILD Trigger: GTCCAGGATATTCCGACGTTCTTCTGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAAGATAAGTCCAGATGAACAAGGAGTGAACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CAA 72 bp | CCTTGTTCATCTGGACTTATCTTGATAACATGGGACTaGATAAATCTACCCACTCCAGAAGAACGTCGGAAT | + |
|
Preference number: 6 (lower is better) Translates to: PCSSGLILITWD*INLPTPEERRN Trigger: ATTCCGACGTTCTTCTGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAAGATAAGTCCAGATGAACAAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CAA 90 bp | GACATTCTTATCCCACATCGGCTATTGAGAAGATTTCTCATCTTTTaGCTGTCAATGGGTGTGAGGCTGAATGATGGCATACTAATAGTC | + |
|
Preference number: 6 (lower is better) Translates to: DILIPHRLLRRFLIF*LSMGVRLNDGILIV Trigger: GACTATTAGTATGCCATCATTCAGCCTCACACCCATTGACAGCAAAAAGATGAGAAATCTTCTCAATAGCCGATGTGGGATAAGAATGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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| CDS CAA 90 bp | TCTCTGTGGTACTCTTCATGGATGATAATCTTCCCAACACTTCGTTaGACTAAAGGTGGTGTTATAGTTGTACCAAAGGTGACAATCCAT | + |
|
Preference number: 6 (lower is better) Translates to: SLWYSSWMIIFPTLR*TKGGVIVVPKVTIH Trigger: ATGGATTGTCACCTTTGGTACAACTATAACACCACCTTTAGTCAAACGAAGTGTTGGGAAGATTATCATCCATGAAGAGTACCACAGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS TCA 72 bp | TCTCATCTTTTTGCTGTCAATGGGTGTGAGGCTGAATaGTGGCATACTAATAGTCAAAGGCAACTGTTTGAT | + |
|
Preference number: 6 (lower is better) Translates to: SHLFAVNGCEAE*WHTNSQRQLFD Trigger: ATCAAACAGTTGCCTTTGACTATTAGTATGCCATCATTCAGCCTCACACCCATTGACAGCAAAAAGATGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CCA 72 bp | TTCACTCCTTGTTCATCTGGACTTATCTTGATAACATaGGACTTGATAAATCTACCCACTCCAGAAGAACGT | + |
|
Preference number: 6 (lower is better) Translates to: FTPCSSGLILIT*DLINLPTPEER Trigger: ACGTTCTTCTGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAAGATAAGTCCAGATGAACAAGGAGTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CAA 90 bp | ATGAGCACTATAAGAATGTTCACTCCTTGTTCATCTGGACTTATCTaGATAACATGGGACTTGATAAATCTACCCACTCCAGAAGAACGT | + |
|
Preference number: 6 (lower is better) Translates to: MSTIRMFTPCSSGLI*ITWDLINLPTPEER Trigger: ACGTTCTTCTGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAAGATAAGTCCAGATGAACAAGGAGTGAACATTCTTATAGTGCTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CCA 72 bp | AATTCTTTTCTTGATTCGCTCGGCACTATCAGTAGATaGGTATCGAAACATGAGCACTATAAGAATGTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: NSFLDSLGTISR*VSKHEHYKNVH Trigger: GTGAACATTCTTATAGTGCTCATGTTTCGATACCCATCTACTGATAGTGCCGAGCGAATCAAGAAAAGAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS TCA 72 bp | AGTCGTATAGGGTCCCAAAATTGTTGTTGTCTTCTTTaGTATTCGATTCGTGGGTATGCTGTTTGTGAAAAT | + |
|
Preference number: 6 (lower is better) Translates to: SRIGSQNCCCLL*YSIRGYAVCEN Trigger: ATTTTCACAAACAGCATACCCACGAATCGAATATCAAAGAAGACAACAACAATTTTGGGACCCTATACGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CAA 72 bp | ATAAGAATGTTCACTCCTTGTTCATCTGGACTTATCTaGATAACATGGGACTTGATAAATCTACCCACTCCA | + |
|
Preference number: 6 (lower is better) Translates to: IRMFTPCSSGLI*ITWDLINLPTP Trigger: TGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAAGATAAGTCCAGATGAACAAGGAGTGAACATTCTTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
||
| CDS CAA 72 bp | GTATCGAAACATGAGCACTATAAGAATGTTCACTCCTaGTTCATCTGGACTTATCTTGATAACATGGGACTT | + |
|
Preference number: 6 (lower is better) Translates to: VSKHEHYKNVHS*FIWTYLDNMGL Trigger: AAGTCCCATGTTATCAAGATAAGTCCAGATGAACAAGGAGTGAACATTCTTATAGTGCTCATGTTTCGATAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116553.9 |
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