RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMPRSS11E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054537

Ensembl transcript IDs: ENSMUST00000161306.2

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAATGTACACTTCAGATTGTTCAGTGTGGTGTTTCGGGCCCTCCTaGTTTGCAAGGCTTCTTTTCCATTTGTGTGTCTCCAAGAACCGT +
Preference number: 1 (lower is better)
Translates to: EMYTSDCSVWCFGPS*FARLLFHLCVSKNR
Trigger: ACGGTTCTTGGAGACACACAAATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGAAACACCACACTGAACAATCTGAAGTGTACATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CCA 90 bp GAGGCCAGTATCACATTGTTTCTTTCTCTTCAGTACTGTGTTAAGTaGGCACCTATTCAGCACAGCATTAATGTAGCTTCCAGAATGCCT +
Preference number: 1 (lower is better)
Translates to: EASITLFLSLQYCVK*APIQHSINVASRMP
Trigger: AGGCATTCTGGAAGCTACATTAATGCTGTGCTGAATAGGTGCCCACTTAACACAGTACTGAAGAGAAAGAAACAATGTGATACTGGCCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CCA 90 bp TATTTAAGGATGGACCATTCAGTATTGGATACCAATGGATATAGTTaGATACCACATGGTACATTCTTCTCTAAGGAGGTCTATTTCTCC +
Preference number: 1 (lower is better)
Translates to: YLRMDHSVLDTNGYS*IPHGTFFSKEVYFS
Trigger: GGAGAAATAGACCTCCTTAGAGAAGAATGTACCATGTGGTATCCAACTATATCCATTGGTATCCAATACTGAATGGTCCATCCTTAAATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CAA 90 bp GTGTGGTGTTTCGGGCCCTCCTGGTTTGCAAGGCTTCTTTTCCATTaGTGTGTCTCCAAGAACCGTCAACAGATAAAACCATCCATTTCA +
Preference number: 2 (lower is better)
Translates to: VWCFGPSWFARLLFH*CVSKNRQQIKPSIS
Trigger: TGAAATGGATGGTTTTATCTGTTGACGGTTCTTGGAGACACACAAATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGAAACACCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR GCA 90 bp CCACTTCTCATGCACAGGCTGAAAGTTCTGGCAGAGGAAGCAAATCTGCCATCAATTCCAGTCAAGATCTaGAGTTTGGAAGAGGTTAAG +
Preference number: 2 (lower is better)
Translates to: PLLMHRLKVLAEEANLPSIPVKI*SLEEVK
Trigger: CTTAACCTCTTCCAAACTGCAGATCTTGACTGGAAT...TGATGGCAGATTTGCTTCCTCTGCCAGAACTTTCAGCCTGTGCATGAGAAGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR GCA 90 bp CTCAGCACAGATGAATGTACCATGCCCACTTCTCATGCACAGGCTGAAAGTTCTAAGAAAAAGACCAAGTaGCAACTACAGTCACATGGC +
Preference number: 2 (lower is better)
Translates to: LSTDECTMPTSHAQAESSKKKTK*QLQSHG
Trigger: GCCATGTGACTGTAGTTGGCACTTGGTCTTTTTCTT...AGAACTTTCAGCCTGTGCATGAGAAGTGGGCATGGTACATTCATCTGTGCTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CCA 90 bp TCTGTTGCTGCATCTGCTTGCTCAACTTTTATACTGAATATGATCATTCCCCCAATGGCAGAGTTCACCTaGCAGCAGCAACATGCTCCT +
Preference number: 2 (lower is better)
Translates to: SVAASACSTFILNMIIPPMAEFT*QQQHAP
Trigger: AGGAGCATGTTGCTGCTGCCAGGTGAACTCTGCCAT...TGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGCAACAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CCA 90 bp CTGAAAGAACTGTATGAATACCTAATCTCTGAGCATCTCTCCAGCCACATAAATTCAGATTGTTCAGTGTaGTGTTTCGGGCCCTCCTGG +
Preference number: 2 (lower is better)
Translates to: LKELYEYLISEHLSSHINSDCSV*CFGPSW
Trigger: CCAGGAGGGCCCGAAACACCACACTGAACAATCTGA...ATTTATGTGGCTGGAGAGATGCTCAGAGATTAGGTATTCATACAGTTCTTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CCA 90 bp GCACAGATGAATGTACCATGCCCACTTCTCATGCACAGGCTGAAAGTTCTGGCATGTGTATTTCATCACTaGTTGTATATTGGCATCCTC +
Preference number: 2 (lower is better)
Translates to: AQMNVPCPLLMHRLKVLACVFHH*LYIGIL
Trigger: GAGGATGCCAATATACAACCAGTGATGAAATACACA...TGCCAGAACTTTCAGCCTGTGCATGAGAAGTGGGCATGGTACATTCATCTGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR GCA 90 bp TCTTCTCTAAGGAGGTCTATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGGTCTGTTGCTGCATCTaGTTGCTCAACTTTTATACT +
Preference number: 2 (lower is better)
Translates to: SSLRRSISPTLCKCVICVVCCCI*LLNFYT
Trigger: AGTATAAAAGTTGAGCAAGCAGATGCAGCAACAGAC...CACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR GCA 90 bp GCTGCATCTGCTTGCTCAACTTTTATACTGAATATGATCATTCCCCCAGGTTTTTTCACCTTGGATGTATaGATGAATACTTTAGATGGT +
Preference number: 2 (lower is better)
Translates to: AASACSTFILNMIIPPGFFTLDV*MNTLDG
Trigger: ACCATCTAAAGTATTCATGCATACATCCAAGGTGAA...AAAACCTGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGC
38% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CAA 90 bp CTCAGCACAGATGAATGTACCATGCCCACTTCTCATGCACAGGCTGAAAGTTCTTCGGGCCCTCCTGGTTaGCAAGGCTTCTTTTCCATT +
Preference number: 3 (lower is better)
Translates to: LSTDECTMPTSHAQAESSSGPPG*QGFFSI
Trigger: AATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGA...AGAACTTTCAGCCTGTGCATGAGAAGTGGGCATGGTACATTCATCTGTGCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR GCA 72 bp CCAGCAAGTAACATCTCAGCACAGATGAATGTACCATaGCCACTTCTCATGCACAGGCTGAAAGTTCTGGCA +
Preference number: 3 (lower is better)
Translates to: PASNISAQMNVP*PLLMHRLKVLA
Trigger: TGCCAGAACTTTCAGCCTGTGCATGAGAAGTGGGCATGGTACATTCATCTGTGCTGAGATGTTACTTGCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CCA 72 bp ACTTCAGATTGTTCAGTGTGGTGTTTCGGGCCCTCCTaGTTTGCAAGGCTTCTTTTCCATTTGTGTGTCTCC +
Preference number: 3 (lower is better)
Translates to: TSDCSVWCFGPS*FARLLFHLCVS
Trigger: GGAGACACACAAATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGAAACACCACACTGAACAATCTGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR GCA 72 bp AGATTGTTCAGTGTGGTGTTTCGGGCCCTCCTGGTTTaGAAGGCTTCTTTTCCATTTGTGTGTCTCCAAGAA +
Preference number: 3 (lower is better)
Translates to: RLFSVVFRALLV*KASFPFVCLQE
Trigger: TTCTTGGAGACACACAAATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGAAACACCACACTGAACAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR GCA 72 bp AAATTAAATGGCAGAGTTCACCTGGCAGCAGCAACATaGTCCTGTAAGAGCAATGCTGGGAAGGAAATGTAC +
Preference number: 3 (lower is better)
Translates to: KLNGRVHLAAAT*SCKSNAGKEMY
Trigger: GTACATTTCCTTCCCAGCATTGCTCTTACAGGAGCATGTTGCTGCTGCCAGGTGAACTCTGCCATTTAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CCA 72 bp ATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGTaGTCCTATGAAAAGGTGCCCATACAGGCCAAAGGT +
Preference number: 3 (lower is better)
Translates to: ISPTLCKCVICV*SYEKVPIQAKG
Trigger: ACCTTTGGCCTGTATGGGCACCTTTTCATAGGACCACACACAGATTACACACTTACAGAGAGTGGGAGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CAA 90 bp AACCTTATTCCAGTCAAGATCTGCAGTTTGGAAGAGGTTAAGGATAATCCCACCAGGCTTCTTTTCCATTaGTGTGTCTCCAAGAACCGT +
Preference number: 3 (lower is better)
Translates to: NLIPVKICSLEEVKDNPTRLLFH*CVSKNR
Trigger: ACGGTTCTTGGAGACACACAAATGGAAAAGAAGCCT...GGTGGGATTATCCTTAACCTCTTCCAAACTGCAGATCTTGACTGGAATAAGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CAA 90 bp AACCTTATTCCAGTCAAGATCTGCAGTTTGGAAGAGGTTAAGGATAATCCCACCAATGTACACTTCAGATaGTTCAGTGTGGTGTTTCGG +
Preference number: 3 (lower is better)
Translates to: NLIPVKICSLEEVKDNPTNVHFR*FSVVFR
Trigger: CCGAAACACCACACTGAACAATCTGAAGTGTACATT...GGTGGGATTATCCTTAACCTCTTCCAAACTGCAGATCTTGACTGGAATAAGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CAA 90 bp TCTTCTCTAAGGAGGTCTATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGGAGGCCAGTATCACATaGTTTCTTTCTCTTCAGTAC +
Preference number: 3 (lower is better)
Translates to: SSLRRSISPTLCKCVICVEASIT*FLSLQY
Trigger: GTACTGAAGAGAAAGAAACAATGTGATACTGGCCTC...CACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR TCA 72 bp GAAGAAGTTTACTCTAATGTGAGAGAAGCTGACGAGTaGAGGAAAGGGTTGTTTCACCTTGGATGTATGCAT +
Preference number: 3 (lower is better)
Translates to: EEVYSNVREADE*RKGLFHLGCMH
Trigger: ATGCATACATCCAAGGTGAAACAACCCTTTCCTTCACTCGTCAGCTTCTCTCACATTAGAGTAAACTTCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR GCA 72 bp ACACACCAATATCTGAACCTTATTCCAGTCAAGATCTaGAGTTTGGAAGAGGTTAAGGATAATCCCACCAGA +
Preference number: 3 (lower is better)
Translates to: THQYLNLIPVKI*SLEEVKDNPTR
Trigger: TCTGGTGGGATTATCCTTAACCTCTTCCAAACTGCAGATCTTGACTGGAATAAGGTTCAGATATTGGTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR TCA 72 bp ACTACAGTCACATGGCTTTTACTACACACCAATATCTaGACCTTATTCCAGTCAAGATCTGCAGTTTGGAAG +
Preference number: 3 (lower is better)
Translates to: TTVTWLLLHTNI*TLFQSRSAVWK
Trigger: CTTCCAAACTGCAGATCTTGACTGGAATAAGGTTCAGATATTGGTGTGTAGTAAAAGCCATGTGACTGTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR TCA 72 bp GAGCTGAAGTTAACATCTGTTGAACACTGTCCAATATaGGTTCTGAGAACCAACTGTCTATCCTCTGAAAGA +
Preference number: 3 (lower is better)
Translates to: ELKLTSVEHCPI*VLRTNCLSSER
Trigger: TCTTTCAGAGGATAGACAGTTGGTTCTCAGAACTCATATTGGACAGTGTTCAACAGATGTTAACTTCAGCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CCA 72 bp ATGGACCATTCAGTATTGGATACCAATGGATATAGTTaGATACCACATGGTACATTCTTCTCTAAGGAGGTC +
Preference number: 3 (lower is better)
Translates to: MDHSVLDTNGYS*IPHGTFFSKEV
Trigger: GACCTCCTTAGAGAAGAATGTACCATGTGGTATCCAACTATATCCATTGGTATCCAATACTGAATGGTCCAT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CAA 90 bp CTGAAAGAACTGTATGAATACCTAATCTCTGAGCATCTCTCCAGCCACATAAATAAGGGTTGTTTCACCTaGGATGTATGCATGAATACT +
Preference number: 3 (lower is better)
Translates to: LKELYEYLISEHLSSHINKGCFT*DVCMNT
Trigger: AGTATTCATGCATACATCCAAGGTGAAACAACCCTT...ATTTATGTGGCTGGAGAGATGCTCAGAGATTAGGTATTCATACAGTTCTTTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR-3UTR CAA 90 bp CTGAAAGAACTGTATGAATACCTAATCTCTGAGCATCTCTCCAGCCACATAAATACAGTAGCTCTTGTGTaGTTCTTGTTATTTAGGAAG +
Preference number: 3 (lower is better)
Translates to: LKELYEYLISEHLSSHINTVALV*FLLFRK
Trigger: CTTCCTAAATAACAAGAACAACACAAGAGCTACTGT...ATTTATGTGGCTGGAGAGATGCTCAGAGATTAGGTATTCATACAGTTCTTTCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR GCA 90 bp ATTGTTCAGTGTGGTGTTTCGGGCCCTCCTGGTTTGCAAGGCTTCTTTTCCATTCACCGCAGGCTGCTTTaGCATGGCCACTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: IVQCGVSGPPGLQGFFSIHRRLL*HGHSSS
Trigger: AGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTG...AATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGAAACACCACACTGAACAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR GCA 90 bp CCACTTCTCATGCACAGGCTGAAAGTTCTGGCAGAGGAAGCAAATCTGCCATCACGGCTTAGACAGTTCTaGCAGTGCAATGTCATAGTC +
Preference number: 4 (lower is better)
Translates to: PLLMHRLKVLAEEANLPSRLRQF*QCNVIV
Trigger: GACTATGACATTGCACTGGCAGAACTGTCTAAGCCG...TGATGGCAGATTTGCTTCCTCTGCCAGAACTTTCAGCCTGTGCATGAGAAGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CAA 72 bp CAGATTGTTCAGTGTGGTGTTTCGGGCCCTCCTGGTTaGCAAGGCTTCTTTTCCATTTGTGTGTCTCCAAGA +
Preference number: 4 (lower is better)
Translates to: QIVQCGVSGPPG*QGFFSICVSPR
Trigger: TCTTGGAGACACACAAATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGAAACACCACACTGAACAATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR GCA 90 bp AGCAATGCTGGGAAGGAAATGTACACTTCAGATTGTTCAGTGTGGTGTTTCGGGGGGAGACAAACCTTATaGACTGCATTTGTGCAGGGG +
Preference number: 4 (lower is better)
Translates to: SNAGKEMYTSDCSVWCFGGRQTL*TAFVQG
Trigger: CCCCTGCACAAATGCAGTGCATAAGGTTTGTCTCCC...CCCGAAACACCACACTGAACAATCTGAAGTGTACATTTCCTTCCCAGCATTGCT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CCA 90 bp GCACAGATGAATGTACCATGCCCACTTCTCATGCACAGGCTGAAAGTTCTGGCAAAACACCAGGCTTATTaGGTTGGCCACATTCATCTC +
Preference number: 4 (lower is better)
Translates to: AQMNVPCPLLMHRLKVLAKHQAY*VGHIHL
Trigger: GAGATGAATGTGGCCAACCCAATAAGCCTGGTGTTT...TGCCAGAACTTTCAGCCTGTGCATGAGAAGTGGGCATGGTACATTCATCTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CCA 90 bp TGCTGCATCTGCTTGCTCAACTTTTATACTGAATATGATCATTCCCCCAGGTTTCACACGTTCTCTTCCTaGCCCTCACCACACATGACC +
Preference number: 4 (lower is better)
Translates to: CCICLLNFYTEYDHSPRFHTFSS*PSPHMT
Trigger: GGTCATGTGTGGTGAGGGCCAGGAAGAGAACGTGTG...AAACCTGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CCA 90 bp AACCTTATTCCAGTCAAGATCTGCAGTTTGGAAGAGGTTAAGGATAATCCCACCCAGGCTGCTTTGCCATaGCCACTCTTCCTCTTCTAC +
Preference number: 4 (lower is better)
Translates to: NLIPVKICSLEEVKDNPTQAALP*PLFLFY
Trigger: GTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTG...GGTGGGATTATCCTTAACCTCTTCCAAACTGCAGATCTTGACTGGAATAAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CCA 90 bp TCTTCTCTAAGGAGGTCTATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGCCAGGCTTATTGGGTTaGCCACATTCATCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: SSLRRSISPTLCKCVICVPGLLG*PHSSPQ
Trigger: CTGGGGAGATGAATGTGGCCAACCCAATAAGCCTGG...CACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR GCA 90 bp TCTTCTCTAAGGAGGTCTATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGACAAACCTTATGCACTaGATTTGTGCAGGGGACCGG +
Preference number: 4 (lower is better)
Translates to: SSLRRSISPTLCKCVICVTNLMH*ICAGDR
Trigger: CCGGTCCCCTGCACAAATGCAGTGCATAAGGTTTGT...CACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR TCA 90 bp TCTGTTGCTGCATCTGCTTGCTCAACTTTTATACTGAATATGATCATTCCCCCATGTGTTCGAAAGCAGTaGGCAGCAGTCACAAGCCAT +
Preference number: 4 (lower is better)
Translates to: SVAASACSTFILNMIIPPCVRKQ*AAVTSH
Trigger: ATGGCTTGTGACTGCTGCTCACTGCTTTCGAACACA...TGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGCAACAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CCA 90 bp TCTTCTCTAAGGAGGTCTATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGCTCTTCCTCTTCTACTaGTGTCCCTCCAACAATCCT +
Preference number: 4 (lower is better)
Translates to: SSLRRSISPTLCKCVICVLFLFY*CPSNNP
Trigger: AGGATTGTTGGAGGGACACCAGTAGAAGAGGAAGAG...CACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR GCA 90 bp GCACAGATGAATGTACCATGCCCACTTCTCATGCACAGGCTGAAAGTTCTGGCAACCATCATTTTTCAATaGTCCAAATCCTGTCACAAA +
Preference number: 4 (lower is better)
Translates to: AQMNVPCPLLMHRLKVLATIIFQ*SKSCHK
Trigger: TTTGTGACAGGATTTGGAGCATTGAAAAATGATGGT...TGCCAGAACTTTCAGCCTGTGCATGAGAAGTGGGCATGGTACATTCATCTGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR TCA 90 bp TGCTGCATCTGCTTGCTCAACTTTTATACTGAATATGATCATTCCCCCAGGTTTAAAATCAGCAGCATGTaGGCCAACACTCCATCATCT +
Preference number: 4 (lower is better)
Translates to: CCICLLNFYTEYDHSPRFKISSM*ANTPSS
Trigger: AGATGATGGAGTGTTGGCTCACATGCTGCTGATTTT...AAACCTGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR GCA 90 bp AACCTTATTCCAGTCAAGATCTGCAGTTTGGAAGAGGTTAAGGATAATCCCACCAAGATTGAGGCTGATTaGAGGTCTGGGTATCTATGT +
Preference number: 4 (lower is better)
Translates to: NLIPVKICSLEEVKDNPTKIEAD*RSGYLC
Trigger: ACATAGATACCCAGACCTGCAATCAGCCTCAATCTT...GGTGGGATTATCCTTAACCTCTTCCAAACTGCAGATCTTGACTGGAATAAGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR GCA 90 bp TGCTGCATCTGCTTGCTCAACTTTTATACTGAATATGATCATTCCCCCAGGTTTCTGAAACTCATGGTTTaGATCTGGGAGACAAACCTT +
Preference number: 4 (lower is better)
Translates to: CCICLLNFYTEYDHSPRFLKLMV*IWETNL
Trigger: AAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAG...AAACCTGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CCA 90 bp TCTTCTCTAAGGAGGTCTATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGTGCCGAAGGTTATTCTaGGTGAAACCATCATTTTTC +
Preference number: 4 (lower is better)
Translates to: SSLRRSISPTLCKCVICVCRRLF*VKPSFF
Trigger: GAAAAATGATGGTTTCACCCAGAATAACCTTCGGCA...CACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR TCA 90 bp CTGAAAGAACTGTATGAATACCTAATCTCTGAGCATCTCTCCAGCCACATAAATATAGCTTGTCACTTGTaGATGACAACGTGCTGTAGT +
Preference number: 4 (lower is better)
Translates to: LKELYEYLISEHLSSHINIACHL*MTTCCS
Trigger: ACTACAGCACGTTGTCATTCACAAGTGACAAGCTAT...ATTTATGTGGCTGGAGAGATGCTCAGAGATTAGGTATTCATACAGTTCTTTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR TCA 90 bp TCTTCTCTAAGGAGGTCTATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGGAAGGTTATTCTGGGTaGAACCATCATTTTTCAATG +
Preference number: 4 (lower is better)
Translates to: SSLRRSISPTLCKCVICVEGYSG*NHHFSM
Trigger: CATTGAAAAATGATGGTTTCACCCAGAATAACCTTC...CACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CAA 72 bp GTTTCTCTGTCTCCTCAATTTCTCCAACATAAAATTTaGAGCAGTCTGTTGCTGCATCTGCTTGCTCAACTT +
Preference number: 4 (lower is better)
Translates to: VSLSPQFLQHKI*SSLLLHLLAQL
Trigger: AAGTTGAGCAAGCAGATGCAGCAACAGACTGCTCAAAATTTTATGTTGGAGAAATTGAGGAGACAGAGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR TCA 90 bp CTGAAAGAACTGTATGAATACCTAATCTCTGAGCATCTCTCCAGCCACATAAATTCCCACAACAATGGTTaGAATAGTTGTCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: LKELYEYLISEHLSSHINSHNNG*NSCLIL
Trigger: CAGAATCAGACAACTATTTCAACCATTGTTGTGGGA...ATTTATGTGGCTGGAGAGATGCTCAGAGATTAGGTATTCATACAGTTCTTTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
3UTR CAA 72 bp AATTTACCCTCAAACCTTGAGAGAATTTACAGTAAATaGATTAGTAACGTACACCACACCCTCCATTCCTTC +
Preference number: 4 (lower is better)
Translates to: NLPSNLERIYSK*ISNVHHTLHSF
Trigger: GAAGGAATGGAGGGTGTGGTGTACGTTACTAATCAATTTACTGTAAATTCTCTCAAGGTTTGAGGGTAAATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CCA 90 bp TGCTCCACAGCGGTGGGACCCATCCCACCGCAGGCTGCTTTGCCATaGCCACTCTTCCTCTTCTACTGGTGTCCCTCCAACAATCCTCAC +
Preference number: 5 (lower is better)
Translates to: CSTAVGPIPPQAALP*PLFLFYWCPSNNPH
Trigger: GTGAGGATTGTTGGAGGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGATGGGTCCCACCGCTGTGGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS GCA 90 bp AAAGTTGCTCCACAGCGGTGGGACCCATCCCACCGCAGGCTGCTTTaGCATGGCCACTCTTCCTCTTCTACTGGTGTCCCTCCAACAATC +
Preference number: 5 (lower is better)
Translates to: KVAPQRWDPSHRRLL*HGHSSSSTGVPPTI
Trigger: GATTGTTGGAGGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGATGGGTCCCACCGCTGTGGAGCAACTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CCA 90 bp TGTCACAAACATCCTCTGCCCCGGCTGAAACTCATGGTTTGCATCTaGGAGACAAACCTTATGCACTGCATTTGTGCAGGGGACCGGCTT +
Preference number: 5 (lower is better)
Translates to: CHKHPLPRLKLMVCI*ETNLMHCICAGDRL
Trigger: AAGCCGGTCCCCTGCACAAATGCAGTGCATAAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGCCGGGGCAGAGGATGTTTGTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CCA 90 bp ATCCCACCGCAGGCTGCTTTGCCATGGCCACTCTTCCTCTTCTACTaGTGTCCCTCCAACAATCCTCACACTAGTCTGTACTGTAGATTT +
Preference number: 5 (lower is better)
Translates to: IPPQAALPWPLFLFY*CPSNNPHTSLYCRF
Trigger: AAATCTACAGTACAGACTAGTGTGAGGATTGTTGGAGGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CAA 90 bp CCACTTCTCATGCACAGGCTGAAAGTTCTGGCAGAGGAAGCAAATCTGCCATCAGGCTCCGTTGTAAGATaGAGGCTGATTGCAGGTCTG +
Preference number: 5 (lower is better)
Translates to: PLLMHRLKVLAEEANLPSGSVVR*RLIAGL
Trigger: CAGACCTGCAATCAGCCTCAATCTTACAACGGAGCC...TGATGGCAGATTTGCTTCCTCTGCCAGAACTTTCAGCCTGTGCATGAGAAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS GCA 90 bp AAATCCTGTCACAAACATCCTCTGCCCCGGCTGAAACTCATGGTTTaGATCTGGGAGACAAACCTTATGCACTGCATTTGTGCAGGGGAC +
Preference number: 5 (lower is better)
Translates to: KSCHKHPLPRLKLMV*IWETNLMHCICAGD
Trigger: GTCCCCTGCACAAATGCAGTGCATAAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CCA 90 bp ATATCTCTAACATCTGCAGTAACAAGTGGACCTCCCGAGTCACCCTaGCACGCATCTTTTTCTCCTTTTAAGAAGCCAGCGCACAACATC +
Preference number: 5 (lower is better)
Translates to: ISLTSAVTSGPPESP*HASFSPFKKPAHNI
Trigger: GATGTTGTGCGCTGGCTTCTTAAAAGGAGAAAAAGATGCGTGCCAGGGTGACTCGGGAGGTCCACTTGTTACTGCAGATGTTAGAGATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS TCA 90 bp TTTTTCAATGCTCCAAATCCTGTCACAAACATCCTCTGCCCCGGCTaGAACTCATGGTTTGCATCTGGGAGACAAACCTTATGCACTGCA +
Preference number: 5 (lower is better)
Translates to: FFNAPNPVTNILCPG*NSWFASGRQTLCTA
Trigger: TGCAGTGCATAAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTTGGAGCATTGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS GCA 90 bp CTGTACTTGCCGAAGGTTATTCTGGGTGAAACCATCATTTTTCAATaGTCCAAATCCTGTCACAAACATCCTCTGCCCCGGCTGAAACTC +
Preference number: 5 (lower is better)
Translates to: LYLPKVILGETIIFQ*SKSCHKHPLPRLKL
Trigger: GAGTTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTTGGAGCATTGAAAAATGATGGTTTCACCCAGAATAACCTTCGGCAAGTACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CAA 90 bp ATTGTTCAGTGTGGTGTTTCGGGCCCTCCTGGTTTGCAAGGCTTCTTTTCCATTGTCACAAGCCATGTGTaGTTGATCAAAGTTGCTCCA +
Preference number: 5 (lower is better)
Translates to: IVQCGVSGPPGLQGFFSIVTSHV*LIKVAP
Trigger: TGGAGCAACTTTGATCAACAACACATGGCTTGTGAC...AATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGAAACACCACACTGAACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CAA 90 bp TGCTGCATCTGCTTGCTCAACTTTTATACTGAATATGATCATTCCCCCAGGTTTACCAGGCTTATTGGGTaGGCCACATTCATCTCCCCA +
Preference number: 5 (lower is better)
Translates to: CCICLLNFYTEYDHSPRFTRLIG*ATFISP
Trigger: TGGGGAGATGAATGTGGCCAACCCAATAAGCCTGGT...AAACCTGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CAA 90 bp TCTTCTCTAAGGAGGTCTATTTCTCCCACTCTCTGTAAGTGTGTAATCTGTGTGGTCTGTACTGTAGATTaGTTCCGTCGTGTCCCACAA +
Preference number: 5 (lower is better)
Translates to: SSLRRSISPTLCKCVICVVCTVD*FRRVPQ
Trigger: TTGTGGGACACGACGGAACAAATCTACAGTACAGAC...CACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS TCA 90 bp GGGTATCTATGTAGTCCACCTGTACTTGCCGAAGGTTATTCTGGGTaGAACCATCATTTTTCAATGCTCCAAATCCTGTCACAAACATCC +
Preference number: 5 (lower is better)
Translates to: GYLCSPPVLAEGYSG*NHHFSMLQILSQTS
Trigger: GGATGTTTGTGACAGGATTTGGAGCATTGAAAAATGATGGTTTCACCCAGAATAACCTTCGGCAAGTACAGGTGGACTACATAGATACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS-3UTR CAA 90 bp TGCTGCATCTGCTTGCTCAACTTTTATACTGAATATGATCATTCCCCCAGGTTTGCTGAAACTCATGGTTaGCATCTGGGAGACAAACCT +
Preference number: 5 (lower is better)
Translates to: CCICLLNFYTEYDHSPRFAETHG*HLGDKP
Trigger: AGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGC...AAACCTGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS GCA 72 bp CCACAGCGGTGGGACCCATCCCACCGCAGGCTGCTTTaGCATGGCCACTCTTCCTCTTCTACTGGTGTCCCT +
Preference number: 6 (lower is better)
Translates to: PQRWDPSHRRLL*HGHSSSSTGVP
Trigger: AGGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGATGGGTCCCACCGCTGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CAA 72 bp TCCACAGCGGTGGGACCCATCCCACCGCAGGCTGCTTaGCCATGGCCACTCTTCCTCTTCTACTGGTGTCCC +
Preference number: 6 (lower is better)
Translates to: STAVGPIPPQAA*PWPLFLFYWCP
Trigger: GGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGATGGGTCCCACCGCTGTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS GCA 72 bp TTGCTCCACAGCGGTGGGACCCATCCCACCGCAGGCTaGTTTGCCATGGCCACTCTTCCTCTTCTACTGGTG +
Preference number: 6 (lower is better)
Translates to: LLHSGGTHPTAG*FAMATLPLLLV
Trigger: CACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGATGGGTCCCACCGCTGTGGAGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CAA 90 bp CAAAGTTGCTCCACAGCGGTGGGACCCATCCCACCGCAGGCTGCTTaGCCATGGCCACTCTTCCTCTTCTACTGGTGTCCCTCCAACAAT +
Preference number: 6 (lower is better)
Translates to: QSCSTAVGPIPPQAA*PWPLFLFYWCPSNN
Trigger: ATTGTTGGAGGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGATGGGTCCCACCGCTGTGGAGCAACTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CCA 72 bp CAGGCTGCTTTGCCATGGCCACTCTTCCTCTTCTACTaGTGTCCCTCCAACAATCCTCACACTAGTCTGTAC +
Preference number: 6 (lower is better)
Translates to: QAALPWPLFLFY*CPSNNPHTSLY
Trigger: GTACAGACTAGTGTGAGGATTGTTGGAGGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CCA 72 bp ACATCTGCAGTAACAAGTGGACCTCCCGAGTCACCCTaGCACGCATCTTTTTCTCCTTTTAAGAAGCCAGCG +
Preference number: 6 (lower is better)
Translates to: TSAVTSGPPESP*HASFSPFKKPA
Trigger: CGCTGGCTTCTTAAAAGGAGAAAAAGATGCGTGCCAGGGTGACTCGGGAGGTCCACTTGTTACTGCAGATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CAA 90 bp CAAATCCTGTCACAAACATCCTCTGCCCCGGCTGAAACTCATGGTTaGCATCTGGGAGACAAACCTTATGCACTGCATTTGTGCAGGGGA +
Preference number: 6 (lower is better)
Translates to: QILSQTSSAPAETHG*HLGDKPYALHLCRG
Trigger: TCCCCTGCACAAATGCAGTGCATAAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS TCA 72 bp GCTCCAAATCCTGTCACAAACATCCTCTGCCCCGGCTaGAACTCATGGTTTGCATCTGGGAGACAAACCTTA +
Preference number: 6 (lower is better)
Translates to: APNPVTNILCPG*NSWFASGRQTL
Trigger: TAAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS GCA 72 bp CACTACTCCAGCAAGGTACCATATATCTCTAACATCTaGAGTAACAAGTGGACCTCCCGAGTCACCCTGGCA +
Preference number: 6 (lower is better)
Translates to: HYSSKVPYISNI*SNKWTSRVTLA
Trigger: TGCCAGGGTGACTCGGGAGGTCCACTTGTTACTGCAGATGTTAGAGATATATGGTACCTTGCTGGAGTAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS GCA 72 bp CACAAACATCCTCTGCCCCGGCTGAAACTCATGGTTTaGATCTGGGAGACAAACCTTATGCACTGCATTTGT +
Preference number: 6 (lower is better)
Translates to: HKHPLPRLKLMV*IWETNLMHCIC
Trigger: ACAAATGCAGTGCATAAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGCCGGGGCAGAGGATGTTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS CAA 72 bp GCACAACATCCTAGGAGTGATGGCTCCGTTGTAAGATaGAGGCTGATTGCAGGTCTGGGTATCTATGTAGTC +
Preference number: 6 (lower is better)
Translates to: AQHPRSDGSVVR*RLIAGLGIYVV
Trigger: GACTACATAGATACCCAGACCTGCAATCAGCCTCAATCTTACAACGGAGCCATCACTCCTAGGATGTTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS GCA 72 bp CCGAAGGTTATTCTGGGTGAAACCATCATTTTTCAATaGTCCAAATCCTGTCACAAACATCCTCTGCCCCGG +
Preference number: 6 (lower is better)
Translates to: PKVILGETIIFQ*SKSCHKHPLPR
Trigger: CCGGGGCAGAGGATGTTTGTGACAGGATTTGGAGCATTGAAAAATGATGGTTTCACCCAGAATAACCTTCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS TCA 72 bp TGTAGTCCACCTGTACTTGCCGAAGGTTATTCTGGGTaGAACCATCATTTTTCAATGCTCCAAATCCTGTCA +
Preference number: 6 (lower is better)
Translates to: CSPPVLAEGYSG*NHHFSMLQILS
Trigger: TGACAGGATTTGGAGCATTGAAAAATGATGGTTTCACCCAGAATAACCTTCGGCAAGTACAGGTGGACTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS TCA 72 bp CCTCTCTTCCAAACTCAGAATATAGCTTGTCACTTGTaGATGACAACGTGCTGTAGTAATTGTAGGTTCTCC +
Preference number: 6 (lower is better)
Translates to: PLFQTQNIACHL*MTTCCSNCRFS
Trigger: GGAGAACCTACAATTACTACAGCACGTTGTCATTCACAAGTGACAAGCTATATTCTGAGTTTGGAAGAGAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2
CDS TCA 72 bp AACACTCCATCATCTTCTTTACTGAACTTGATAATGTaGGCCTTGACAAGTTGTCCCCGTAGTGGAGATTTA +
Preference number: 6 (lower is better)
Translates to: NTPSSSLLNLIM*ALTSCPRSGDL
Trigger: TAAATCTCCACTACGGGGACAACTTGTCAAGGCTCACATTATCAAGTTCAGTAAAGAAGATGATGGAGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161306.2