Pregenerated sensors for TMPRSS11D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061259Ensembl transcript IDs: ENSMUST00000031175.12, ENSMUST00000122377.2
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTAATGGGACGTTCAGAAGGGGCATTTCCAGTCTCCTTTGCAGTTaGAATGTGAAGCCATGGCATCCGAGTCAGTCACACTTGGATACA | + |
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Preference number: 1 (lower is better) Translates to: CNGTFRRGISSLLCS*NVKPWHPSQSHLDT Trigger: TGTATCCAAGTGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGGAGACTGGAAATGCCCCTTCTGAACGTCCCATTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGAAATCCGCCTGCCTCTaGCTCCTGAGTGCTGGGGTT | + |
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Preference number: 2 (lower is better) Translates to: QVPMHIQALATVGANKNLKSACL*LLSAGV Trigger: AACCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTT...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGCGAGTCAGTCACACTTaGATACAGAGACCTCATGGC | + |
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Preference number: 2 (lower is better) Translates to: QVPMHIQALATVGANKNLRVSHT*IQRPHG Trigger: GCCATGAGGTCTCTGTATCCAAGTGTGACTGACTCG...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACCTCTGTAGACCAGGTTaGCCTCAAACTCAGAAATCC | + |
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Preference number: 2 (lower is better) Translates to: TQVPMHIQALATVGANKNLCRPG*PQTQKS Trigger: GGATTTCTGAGTTTGAGGCCAACCTGGTCTACAGAG...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGAGTCTCCTTTGCAGTTaGAATGTGAAGCCATGGCAT | + |
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Preference number: 2 (lower is better) Translates to: QVPMHIQALATVGANKNLSLLCS*NVKPWH Trigger: ATGCCATGGCTTCACATTTCAACTGCAAAGGAGACT...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGACCTCAGCTTCTTCATaGAGGAGATATGTCTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: QVPMHIQALATVGANKNLTSASS*RRYVFS Trigger: AGAAAAGACATATCTCCTTCATGAAGAAGCTGAGGT...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR TCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACACCTCAGCTTCTTCATaGAGGAGATATGTCTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: TQVPMHIQALATVGANKNTSASS*RRYVFS Trigger: AGAAAAGACATATCTCCTTCATGAAGAAGCTGAGGT...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGGCTGTGTTGATTCATCACCTCAGCTTCTTCATGAAGGAGATATGTCTTTTCGAGTCAGTCACACTTaGATACAGAGACCTCATGGC | + |
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Preference number: 2 (lower is better) Translates to: RGCVDSSPQLLHEGDMSFRVSHT*IQRPHG Trigger: GCCATGAGGTCTCTGTATCCAAGTGTGACTGACTCG...AAAAGACATATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACACACTATTTGTTCTGTaGCCTCACATATTTAACGTT | + |
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Preference number: 2 (lower is better) Translates to: TQVPMHIQALATVGANKNTLFVL*PHIFNV Trigger: AACGTTAAATATGTGAGGCCACAGAACAAATAGTGT...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR GCA 72 bp | CCAGGTTGGCCTCAAACTCAGAAATCCGCCTGCCTCTaGCTCCTGAGTGCTGGGGTTAAAGGTGTGTGCCAC | + |
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Preference number: 3 (lower is better) Translates to: PGWPQTQKSACL*LLSAGVKGVCH Trigger: GTGGCACACACCTTTAACCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAACCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR GCA 72 bp | TGTAGACCAGGTTGGCCTCAAACTCAGAAATCCGCCTaGCTCTGCCTCCTGAGTGCTGGGGTTAAAGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: CRPGWPQTQKSA*LCLLSAGVKGV Trigger: CACACCTTTAACCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAACCTGGTCTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR TCA 72 bp | ACGTTCAGAAGGGGCATTTCCAGTCTCCTTTGCAGTTaGAATGTGAAGCCATGGCATCCGAGTCAGTCACAC | + |
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Preference number: 3 (lower is better) Translates to: TFRRGISSLLCS*NVKPWHPSQSH Trigger: GTGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGGAGACTGGAAATGCCCCTTCTGAACGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CAA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGCTGAAGAGGCTGTGTaGATTCATCACCTCAGCTTC | + |
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Preference number: 3 (lower is better) Translates to: QVPMHIQALATVGANKNLAEEAV*IHHLSF Trigger: GAAGCTGAGGTGATGAATCAACACAGCCTCTTCAGC...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CAA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACCATTTCCAGTCTCCTTaGCAGTTGAAATGTGAAGCC | + |
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Preference number: 3 (lower is better) Translates to: TQVPMHIQALATVGANKNHFQSP*QLKCEA Trigger: GGCTTCACATTTCAACTGCAAAGGAGACTGGAAATG...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CAA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGCATTTCCAGTCTCCTTaGCAGTTGAAATGTGAAGCC | + |
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Preference number: 3 (lower is better) Translates to: QVPMHIQALATVGANKNLHFQSP*QLKCEA Trigger: GGCTTCACATTTCAACTGCAAAGGAGACTGGAAATG...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CAA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGCCAACAGTAGGAAGTaGGTAGTAGGGATTTCTTTC | + |
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Preference number: 3 (lower is better) Translates to: QVPMHIQALATVGANKNLANSRK*VVGISF Trigger: GAAAGAAATCCCTACTACCAACTTCCTACTGTTGGC...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTGGGTGCCAATAAAAACTTGGACCATTTGTGATCAAGTCATATACATTGTTGCTGAAGAGGCTGTGTaGATTCATCACCTCAGCTTC | + |
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Preference number: 3 (lower is better) Translates to: QWVPIKTWTICDQVIYIVAEEAV*IHHLSF Trigger: GAAGCTGAGGTGATGAATCAACACAGCCTCTTCAGC...AACAATGTATATGACTTGATCACAAATGGTCCAAGTTTTTATTGGCACCCACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR TCA 72 bp | TTTCTTTCCCACAAATCTTGTGGTTGCAAACATAGCTaGAGAGGCTGTGTTGATTCATCACCTCAGCTTCTT | + |
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Preference number: 3 (lower is better) Translates to: FLSHKSCGCKHS*RGCVDSSPQLL Trigger: AAGAAGCTGAGGTGATGAATCAACACAGCCTCTTCAGCTATGTTTGCAACCACAAGATTTGTGGGAAAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTGGGTGCCAATAAAAACTTGGACCATTTGTGATCAAGTCATATACATTGTTCAGTCTCCTTTGCAGTaGAAATGTGAAGCCATGGCA | + |
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Preference number: 3 (lower is better) Translates to: QWVPIKTWTICDQVIYIVQSPLQ*KCEAMA Trigger: TGCCATGGCTTCACATTTCAACTGCAAAGGAGACTG...AACAATGTATATGACTTGATCACAAATGGTCCAAGTTTTTATTGGCACCCACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGGACCCACATGTTACTaGTCAGGGCACCTCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: QVPMHIQALATVGANKNLGPTCY*SGHLHS Trigger: ACTGTGGAGGTGCCCTGATCAGTAACATGTGGGTCC...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | CCTTTGCAGTTGAAATGTGAAGCCATGGCATCCGAGTCAGTCACACTTGGATACGGACCCACATGTTACTaGTCAGGGCACCTCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: PLQLKCEAMASESVTLGYGPTCY*SGHLHS Trigger: ACTGTGGAGGTGCCCTGATCAGTAACATGTGGGTCC...GTATCCAAGTGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR CCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACCACGCCTGGCTTATTTaGGAGGCCACACTGATATCC | + |
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Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNHAWLI*EATLIS Trigger: GGATATCAGTGTGGCCTCCCAAATAAGCCAGGCGTG...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR CCA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACCACGCCTGGCTTATTTaGGAGGCCACACTGATATCC | + |
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Preference number: 4 (lower is better) Translates to: VPMHIQALATVGANKNLDHAWLI*EATLIS Trigger: GGATATCAGTGTGGCCTCCCAAATAAGCCAGGCGTG...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| 3UTR CAA 72 bp | GACGTTCAGAAGGGGCATTTCCAGTCTCCTTTGCAGTaGAAATGTGAAGCCATGGCATCCGAGTCAGTCACA | + |
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Preference number: 4 (lower is better) Translates to: DVQKGHFQSPLQ*KCEAMASESVT Trigger: TGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGGAGACTGGAAATGCCCCTTCTGAACGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACCGACAGAACCAGGGATaGTATTTTGGGTTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNRQNQG*YFGLLL Trigger: CAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCG...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | CCTTTGCAGTTGAAATGTGAAGCCATGGCATCCGAGTCAGTCACACTTGGATACCGACAGAACCAGGGATaGTATTTTGGGTTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: PLQLKCEAMASESVTLGYRQNQG*YFGLLL Trigger: CAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCG...GTATCCAAGTGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR GCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACATCCCCAGCTCACAATaGCCACAACAAACCAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNIPSSQ*PQQTKA Trigger: GGCTTTGGTTTGTTGTGGGCATTGTGAGCTGGGGAT...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR CCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACAGGGCACCTCCACAGTaGTGGACATTATTGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNRAPPQ*WTLLSC Trigger: ACAGCTCAATAATGTCCACCACTGTGGAGGTGCCCT...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR CCA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACTCGAGTATACACGCCTaGCTTATTTGGGAGGCCACA | + |
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Preference number: 4 (lower is better) Translates to: VPMHIQALATVGANKNLDSSIHA*LIWEAT Trigger: TGTGGCCTCCCAAATAAGCCAGGCGTGTATACTCGA...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR CCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGCACCTCCACAGTGGTaGACATTATTGAGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: QVPMHIQALATVGANKNLAPPQW*TLLSCR Trigger: TCTACAGCTCAATAATGTCCACCACTGTGGAGGTGC...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR CCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACGCACCTCCACAGTGGTaGACATTATTGAGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNAPPQW*TLLSCR Trigger: TCTACAGCTCAATAATGTCCACCACTGTGGAGGTGC...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGCTGTATCCTGGTCAGTaGGTGATGTTATCTCATTCG | + |
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Preference number: 4 (lower is better) Translates to: QVPMHIQALATVGANKNLLYPGQ*VMLSHS Trigger: CGAATGAGATAACATCACTCACTGACCAGGATACAG...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
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| CDS-3UTR GCA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACTTTGAAGCAATGAGCTaGTGTCAGGACCCACATGTT | + |
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Preference number: 4 (lower is better) Translates to: VPMHIQALATVGANKNLDFEAMS*CQDPHV Trigger: AACATGTGGGTCCTGACAGCAGCTCATTGCTTCAAA...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR GCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTTGAAGCAATGAGCTaGTGTCAGGACCCACATGTT | + |
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Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNFEAMS*CQDPHV Trigger: AACATGTGGGTCCTGACAGCAGCTCATTGCTTCAAA...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR GCA 90 bp | CCTTTGCAGTTGAAATGTGAAGCCATGGCATCCGAGTCAGTCACACTTGGATACGATGATATTTTGGGTTaGTGCTGGGAGACATACCCT | + |
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Preference number: 4 (lower is better) Translates to: PLQLKCEAMASESVTLGYDDILG*CWETYP Trigger: AGGGTATGTCTCCCAGCAGCAACCCAAAATATCATC...GTATCCAAGTGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGCAGTTGAAATGTGAAGCCATGGCATCCGAGTCAGTCACACTTGGATACGGGAGACATACCCTATaGATATTTCTGGAAAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: PLQLKCEAMASESVTLGYGRHTL*IFLEKA Trigger: CGCCTTTTCCAGAAATATCCATAGGGTATGTCTCCC...GTATCCAAGTGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR CCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACATTTTGGGTTGCTGCTaGGAGACATACCCTATGGAT | + |
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Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNILGCC*ETYPMD Trigger: ATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAAT...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGCTGAACTTATTATTCTaGCCTCTCCTTGCCGTAGAT | + |
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Preference number: 4 (lower is better) Translates to: QVPMHIQALATVGANKNLLNLLF*PLLAVD Trigger: ATCTACGGCAAGGAGAGGTCAGAATAATAAGTTCAG...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | ACAGTTAAACCATATTTATGTAATGGGACGTTCAGAAGGGGCATTTCCAGTCTCTTTGGGAGGCCACACTaGTATCCCCAGCTCACAATG | + |
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Preference number: 4 (lower is better) Translates to: TVKPYLCNGTFRRGISSLFGRPH*YPQLTM Trigger: CATTGTGAGCTGGGGATATCAGTGTGGCCTCCCAAA...GAGACTGGAAATGCCCCTTCTGAACGTCCCATTACATAAATATGGTTTAACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGCTGTATCCTGGTCAGTaGGTGCTATCATTAAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: QVPMHIQALATVGANKNLLYPGQ*VLSLRK Trigger: CTTTCTTAATGATAGCACTCACTGACCAGGATACAG...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122377.2 |
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| CDS-3UTR GCA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACTATAAGGTCTGGACGTaGTCCACATTCTTGAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: VPMHIQALATVGANKNLDYKVWT*STFLSQ Trigger: TTGACTCAAGAATGTGGAGCACGTCCAGACCTTATA...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACCTTCGTAGCACAGATTaGATTCTGGTTTTCATTACC | + |
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Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNLRSTD*ILVFIT Trigger: GGTAATGAAAACCAGAATTCAATCTGTGCTACGAAG...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
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| CDS-3UTR TCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGCGTGCTCCACATTCTTaGGTCAAAACATTTTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: QVPMHIQALATVGANKNLRAPHS*VKTFSV Trigger: TACAGAAAATGTTTTGACTCAAGAATGTGGAGCACG...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS-3UTR TCA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACAATGATTCTCTCTTCTaGCAGTGTTATAAGGTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VPMHIQALATVGANKNLDNDSLF*QCYKVW Trigger: CCAGACCTTATAACACTGTCAGAAGAGAGAATCATT...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR GCA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACAACCAGCTGGCGTATTaGATTCCTCTGAACTTATTA | + |
|
Preference number: 4 (lower is better) Translates to: VPMHIQALATVGANKNLDNQLAY*IPLNLL Trigger: TAATAAGTTCAGAGGAATGCAATACGCCAGCTGGTT...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR GCA 90 bp | ACACAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACAACCAGCTGGCGTATTaGATTCCTCTGAACTTATTA | + |
|
Preference number: 4 (lower is better) Translates to: TQVPMHIQALATVGANKNNQLAY*IPLNLL Trigger: TAATAAGTTCAGAGGAATGCAATACGCCAGCTGGTT...GTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR GCA 90 bp | ACAGTTAAACCATATTTATGTAATGGGACGTTCAGAAGGGGCATTTCCAGTCTCATCCCCAGCTCACAATaGCCACAACAAACCAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: TVKPYLCNGTFRRGISSLIPSSQ*PQQTKA Trigger: GGCTTTGGTTTGTTGTGGGCATTGTGAGCTGGGGAT...GAGACTGGAAATGCCCCTTCTGAACGTCCCATTACATAAATATGGTTTAACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CCA 90 bp | CAGTGGGTGCCAATAAAAACTTGGACCATTTGTGATCAAGTCATATACATTGTTGTAGACCTGCCATCATaGCCAGGAGCCCTACCGTTA | + |
|
Preference number: 4 (lower is better) Translates to: QWVPIKTWTICDQVIYIVVDLPS*PGALPL Trigger: TAACGGTAGGGCTCCTGGCCATGATGGCAGGTCTAC...AACAATGTATATGACTTGATCACAAATGGTCCAAGTTTTTATTGGCACCCACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
||
| CDS-3UTR CCA 90 bp | AGAGGCTGTGTTGATTCATCACCTCAGCTTCTTCATGAAGGAGATATGTCTTTTTCGAGTATACACGCCTaGCTTATTTGGGAGGCCACA | + |
|
Preference number: 4 (lower is better) Translates to: RGCVDSSPQLLHEGDMSFSSIHA*LIWEAT Trigger: TGTGGCCTCCCAAATAAGCCAGGCGTGTATACTCGA...AAAAGACATATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR TCA 90 bp | CAGGTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGTCAAAAGCTAAAAAGTaGATAAGTAGACCTGCCATC | + |
|
Preference number: 4 (lower is better) Translates to: QVPMHIQALATVGANKNLSKAKK*ISRPAI Trigger: GATGGCAGGTCTACTTATTCACTTTTTAGCTTTTGA...CAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCACCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
||
| CDS-3UTR CCA 90 bp | ACAGTTAAACCATATTTATGTAATGGGACGTTCAGAAGGGGCATTTCCAGTCTCCCAGGGATGATATTTTaGGTTGCTGCTGGGAGACAT | + |
|
Preference number: 4 (lower is better) Translates to: TVKPYLCNGTFRRGISSLPGMIF*VAAGRH Trigger: ATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGG...GAGACTGGAAATGCCCCTTCTGAACGTCCCATTACATAAATATGGTTTAACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CCA 90 bp | AGAGGCTGTGTTGATTCATCACCTCAGCTTCTTCATGAAGGAGATATGTCTTTTGGGAGACATACCCTATaGATATTTCTGGAAAAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: RGCVDSSPQLLHEGDMSFGRHTL*IFLEKA Trigger: CGCCTTTTCCAGAAATATCCATAGGGTATGTCTCCC...AAAAGACATATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| 3UTR CAA 72 bp | AATCTTGTGGTTGCAAACATAGCTGAAGAGGCTGTGTaGATTCATCACCTCAGCTTCTTCATGAAGGAGATA | + |
|
Preference number: 4 (lower is better) Translates to: NLVVANIAEEAV*IHHLSFFMKEI Trigger: TATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCTTCAGCTATGTTTGCAACCACAAGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR TCA 90 bp | ACAGTTAAACCATATTTATGTAATGGGACGTTCAGAAGGGGCATTTCCAGTCTCCTGAACTTATTATTCTaGCCTCTCCTTGCCGTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: TVKPYLCNGTFRRGISSLLNLLF*PLLAVD Trigger: ATCTACGGCAAGGAGAGGTCAGAATAATAAGTTCAG...GAGACTGGAAATGCCCCTTCTGAACGTCCCATTACATAAATATGGTTTAACTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR GCA 90 bp | AGAGGCTGTGTTGATTCATCACCTCAGCTTCTTCATGAAGGAGATATGTCTTTTTATAAGGTCTGGACGTaGTCCACATTCTTGAGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: RGCVDSSPQLLHEGDMSFYKVWT*STFLSQ Trigger: TTGACTCAAGAATGTGGAGCACGTCCAGACCTTATA...AAAAGACATATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CCA 90 bp | AGAGGCTGTGTTGATTCATCACCTCAGCTTCTTCATGAAGGAGATATGTCTTTTCCCTATGGATATTTCTaGAAAAGGCGACAGATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: RGCVDSSPQLLHEGDMSFPYGYF*KRRQIC Trigger: ACAGATCTGTCGCCTTTTCCAGAAATATCCATAGGG...AAAAGACATATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CCA 90 bp | ACAGTTAAACCATATTTATGTAATGGGACGTTCAGAAGGGGCATTTCCAGTCTCCCCTATGGATATTTCTaGAAAAGGCGACAGATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TVKPYLCNGTFRRGISSLPYGYF*KRRQIC Trigger: ACAGATCTGTCGCCTTTTCCAGAAATATCCATAGGG...GAGACTGGAAATGCCCCTTCTGAACGTCCCATTACATAAATATGGTTTAACTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CCA 90 bp | CAGTGGGTGCCAATAAAAACTTGGACCATTTGTGATCAAGTCATATACATTGTTCCAGGGATGATATTTTaGGTTGCTGCTGGGAGACAT | + |
|
Preference number: 4 (lower is better) Translates to: QWVPIKTWTICDQVIYIVPGMIF*VAAGRH Trigger: ATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGG...AACAATGTATATGACTTGATCACAAATGGTCCAAGTTTTTATTGGCACCCACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR TCA 90 bp | AGAGGCTGTGTTGATTCATCACCTCAGCTTCTTCATGAAGGAGATATGTCTTTTCGTATTGCATTCCTCTaGACTTATTATTCTGACCTC | + |
|
Preference number: 4 (lower is better) Translates to: RGCVDSSPQLLHEGDMSFRIAFL*TYYSDL Trigger: GAGGTCAGAATAATAAGTTCAGAGGAATGCAATACG...AAAAGACATATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CCA 90 bp | CAGTGGGTGCCAATAAAAACTTGGACCATTTGTGATCAAGTCATATACATTGTTATTTTGGGTTGCTGCTaGGAGACATACCCTATGGAT | + |
|
Preference number: 4 (lower is better) Translates to: QWVPIKTWTICDQVIYIVILGCC*ETYPMD Trigger: ATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAAT...AACAATGTATATGACTTGATCACAAATGGTCCAAGTTTTTATTGGCACCCACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR TCA 90 bp | CAGTGGGTGCCAATAAAAACTTGGACCATTTGTGATCAAGTCATATACATTGTTCGTGCTCCACATTCTTaGGTCAAAACATTTTCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: QWVPIKTWTICDQVIYIVRAPHS*VKTFSV Trigger: TACAGAAAATGTTTTGACTCAAGAATGTGGAGCACG...AACAATGTATATGACTTGATCACAAATGGTCCAAGTTTTTATTGGCACCCACTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR TCA 90 bp | CAGTGGGTGCCAATAAAAACTTGGACCATTTGTGATCAAGTCATATACATTGTTAATGATTCTCTCTTCTaGCAGTGTTATAAGGTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: QWVPIKTWTICDQVIYIVNDSLF*QCYKVW Trigger: CCAGACCTTATAACACTGTCAGAAGAGAGAATCATT...AACAATGTATATGACTTGATCACAAATGGTCCAAGTTTTTATTGGCACCCACTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CCA 90 bp | CAGTGGGTGCCAATAAAAACTTGGACCATTTGTGATCAAGTCATATACATTGTTGCACAGATTGAATTCTaGTTTTCATTACCTTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: QWVPIKTWTICDQVIYIVAQIEF*FSLPFC Trigger: ACAGAAAGGTAATGAAAACCAGAATTCAATCTGTGC...AACAATGTATATGACTTGATCACAAATGGTCCAAGTTTTTATTGGCACCCACTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
||
| CDS CCA 90 bp | AGCCGCCTTGAGTCTTCTTGTACTAGCGGGCCACCTGAATCACCCTaGCATGCATCCACGGCCCCTGAACGCATTCCAGCACACAGCATT | + |
|
Preference number: 5 (lower is better) Translates to: SRLESSCTSGPPESP*HASTAPERIPAHSI Trigger: AATGCTGTGTGCTGGAATGCGTTCAGGGGCCGTGGATGCATGCCAGGGTGATTCAGGTGGCCCGCTAGTACAAGAAGACTCAAGGCGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS GCA 90 bp | AGGGCACCTCCACAGTGGTGGACATTATTGAGCTGTAGACTGACTTaGCAGGGCCAGTCACCGGGCTCAGCTTGCATGCCTCCAATGATT | + |
|
Preference number: 5 (lower is better) Translates to: RAPPQWWTLLSCRLT*QGQSPGSACMPPMI Trigger: AATCATTGGAGGCATGCAAGCTGAGCCCGGTGACTGGCCCTGGCAAGTCAGTCTACAGCTCAATAATGTCCACCACTGTGGAGGTGCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS GCA 90 bp | CGCCTGGCTTATTTGGGAGGCCACACTGATATCCCCAGCTCACAATaGCCACAACAAACCAAAGCCGCCTTGAGTCTTCTTGTACTAGCG | + |
|
Preference number: 5 (lower is better) Translates to: RLAYLGGHTDIPSSQ*PQQTKAALSLLVLA Trigger: CGCTAGTACAAGAAGACTCAAGGCGGCTTTGGTTTGTTGTGGGCATTGTGAGCTGGGGATATCAGTGTGGCCTCCCAAATAAGCCAGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS GCA 90 bp | TTGAGCTGTAGACTGACTTGCCAGGGCCAGTCACCGGGCTCAGCTTaGATGCCTCCAATGATTCTCTCTTCTGACAGTGTTATAAGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: LSCRLTCQGQSPGSA*MPPMILSSDSVIRS Trigger: AGACCTTATAACACTGTCAGAAGAGAGAATCATTGGAGGCATGCAAGCTGAGCCCGGTGACTGGCCCTGGCAAGTCAGTCTACAGCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS GCA 90 bp | GACTGCGTTGCCTCCATATGTGAGAGATCCCCATCCTGTAACATATaGGACAGAACCAGGGATGATATTTTGGGTTGCTGCTGGGAGACA | + |
|
Preference number: 5 (lower is better) Translates to: DCVASICERSPSCNI*DRTRDDILGCCWET Trigger: TGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATATGTTACAGGATGGGGATCTCTCACATATGGAGGCAACGCAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS GCA 90 bp | ATGGATATTTCTGGAAAAGGCGACAGATCTGTCAAGTTGTACAACTaGGATGTCATTGTCACGAGTTACGGAGCTGTACCCGTCGTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: MDISGKGDRSVKLYN*DVIVTSYGAVPVVG Trigger: GCCCACGACGGGTACAGCTCCGTAACTCGTGACAATGACATCGCAGTTGTACAACTTGACAGATCTGTCGCCTTTTCCAGAAATATCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CAA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACCAAACCAAAGCCGCCTaGAGTCTTCTTGTACTAGCG | + |
|
Preference number: 5 (lower is better) Translates to: VPMHIQALATVGANKNLDQTKAA*SLLVLA Trigger: CGCTAGTACAAGAAGACTCAAGGCGGCTTTGGTTTG...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS GCA 90 bp | GCTGGCGTATTGCATTCCTCTGAACTTATTATTCTGACCTCTCCTTaGCGTAGATTTGTGACTGCGTTGCCTCCATATGTGAGAGATCCC | + |
|
Preference number: 5 (lower is better) Translates to: AGVLHSSELIILTSP*RRFVTALPPYVRDP Trigger: GGGATCTCTCACATATGGAGGCAACGCAGTCACAAATCTACGGCAAGGAGAGGTCAGAATAATAAGTTCAGAGGAATGCAATACGCCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CAA 90 bp | CCTTTGCAGTTGAAATGTGAAGCCATGGCATCCGAGTCAGTCACACTTGGATACCAGTGGTGGACATTATaGAGCTGTAGACTGACTTGC | + |
|
Preference number: 5 (lower is better) Translates to: PLQLKCEAMASESVTLGYQWWTL*SCRLTC Trigger: GCAAGTCAGTCTACAGCTCAATAATGTCCACCACTG...GTATCCAAGTGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS GCA 90 bp | TCCTGTAACATATGCGACAGAACCAGGGATGATATTTTGGGTTGCTaGTGGGAGACATACCCTATGGATATTTCTGGAAAAGGCGACAGA | + |
|
Preference number: 5 (lower is better) Translates to: SCNICDRTRDDILGC*WETYPMDISGKGDR Trigger: TCTGTCGCCTTTTCCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATATGTTACAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CAA 90 bp | AGAGGCTGTGTTGATTCATCACCTCAGCTTCTTCATGAAGGAGATATGTCTTTTACACGCCTGGCTTATTaGGGAGGCCACACTGATATC | + |
|
Preference number: 5 (lower is better) Translates to: RGCVDSSPQLLHEGDMSFTRLAY*GGHTDI Trigger: GATATCAGTGTGGCCTCCCAAATAAGCCAGGCGTGT...AAAAGACATATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CAA 90 bp | ACAGTTAAACCATATTTATGTAATGGGACGTTCAGAAGGGGCATTTCCAGTCTCACACGCCTGGCTTATTaGGGAGGCCACACTGATATC | + |
|
Preference number: 5 (lower is better) Translates to: TVKPYLCNGTFRRGISSLTRLAY*GGHTDI Trigger: GATATCAGTGTGGCCTCCCAAATAAGCCAGGCGTGT...GAGACTGGAAATGCCCCTTCTGAACGTCCCATTACATAAATATGGTTTAACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS CCA 90 bp | TGTAACATATGCGACAGAACCAGGGATGATATTTTGGGTTGCTGCTaGGAGACATACCCTATGGATATTTCTGGAAAAGGCGACAGATCT | + |
|
Preference number: 5 (lower is better) Translates to: CNICDRTRDDILGCC*ETYPMDISGKGDRS Trigger: AGATCTGTCGCCTTTTCCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATATGTTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CAA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACACGTGCTCCACATTCTaGAGTCAAAACATTTTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: VPMHIQALATVGANKNLDTCSTF*SQNIFC Trigger: ACAGAAAATGTTTTGACTCAAGAATGTGGAGCACGT...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CAA 90 bp | GTGCCCATGCACATCCAAGCTTTAGCTACAGTGGGTGCCAATAAAAACTTGGACCCTTCTTTTCTTAGTTaGACAACATGTGTCCTGATA | + |
|
Preference number: 5 (lower is better) Translates to: VPMHIQALATVGANKNLDPSFLS*TTCVLI Trigger: TATCAGGACACATGTTGTCAAACTAAGAAAAGAAGG...GTCCAAGTTTTTATTGGCACCCACTGTAGCTAAAGCTTGGATGTGCATGGGCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
||
| CDS-3UTR CAA 90 bp | AGAGGCTGTGTTGATTCATCACCTCAGCTTCTTCATGAAGGAGATATGTCTTTTCAGTGGTGGACATTATaGAGCTGTAGACTGACTTGC | + |
|
Preference number: 5 (lower is better) Translates to: RGCVDSSPQLLHEGDMSFQWWTL*SCRLTC Trigger: GCAAGTCAGTCTACAGCTCAATAATGTCCACCACTG...AAAAGACATATCTCCTTCATGAAGAAGCTGAGGTGATGAATCAACACAGCCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS-3UTR CAA 90 bp | ACAGTTAAACCATATTTATGTAATGGGACGTTCAGAAGGGGCATTTCCAGTCTCACGTGCTCCACATTCTaGAGTCAAAACATTTTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: TVKPYLCNGTFRRGISSLTCSTF*SQNIFC Trigger: ACAGAAAATGTTTTGACTCAAGAATGTGGAGCACGT...GAGACTGGAAATGCCCCTTCTGAACGTCCCATTACATAAATATGGTTTAACTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS CCA 72 bp | GAGTCTTCTTGTACTAGCGGGCCACCTGAATCACCCTaGCATGCATCCACGGCCCCTGAACGCATTCCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: ESSCTSGPPESP*HASTAPERIPA Trigger: TGCTGGAATGCGTTCAGGGGCCGTGGATGCATGCCAGGGTGATTCAGGTGGCCCGCTAGTACAAGAAGACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS GCA 72 bp | CCACAGTGGTGGACATTATTGAGCTGTAGACTGACTTaGCAGGGCCAGTCACCGGGCTCAGCTTGCATGCCT | + |
|
Preference number: 6 (lower is better) Translates to: PQWWTLLSCRLT*QGQSPGSACMP Trigger: AGGCATGCAAGCTGAGCCCGGTGACTGGCCCTGGCAAGTCAGTCTACAGCTCAATAATGTCCACCACTGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS CAA 72 bp | CCCAGCTCACAATGCCCACAACAAACCAAAGCCGCCTaGAGTCTTCTTGTACTAGCGGGCCACCTGAATCAC | + |
|
Preference number: 6 (lower is better) Translates to: PSSQCPQQTKAA*SLLVLAGHLNH Trigger: GTGATTCAGGTGGCCCGCTAGTACAAGAAGACTCAAGGCGGCTTTGGTTTGTTGTGGGCATTGTGAGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS CAA 90 bp | ACTGATATCCCCAGCTCACAATGCCCACAACAAACCAAAGCCGCCTaGAGTCTTCTTGTACTAGCGGGCCACCTGAATCACCCTGGCATG | + |
|
Preference number: 6 (lower is better) Translates to: TDIPSSQCPQQTKAA*SLLVLAGHLNHPGM Trigger: CATGCCAGGGTGATTCAGGTGGCCCGCTAGTACAAGAAGACTCAAGGCGGCTTTGGTTTGTTGTGGGCATTGTGAGCTGGGGATATCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS CCA 72 bp | ACCCACATGTTACTGATCAGGGCACCTCCACAGTGGTaGACATTATTGAGCTGTAGACTGACTTGCCAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: THMLLIRAPPQW*TLLSCRLTCQG Trigger: GCCCTGGCAAGTCAGTCTACAGCTCAATAATGTCCACCACTGTGGAGGTGCCCTGATCAGTAACATGTGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS CCA 72 bp | AGGACCCACATGTTACTGATCAGGGCACCTCCACAGTaGTGGACATTATTGAGCTGTAGACTGACTTGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: RTHMLLIRAPPQ*WTLLSCRLTCQ Trigger: CTGGCAAGTCAGTCTACAGCTCAATAATGTCCACCACTGTGGAGGTGCCCTGATCAGTAACATGTGGGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS GCA 72 bp | TATTTGGGAGGCCACACTGATATCCCCAGCTCACAATaGCCACAACAAACCAAAGCCGCCTTGAGTCTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: YLGGHTDIPSSQ*PQQTKAALSLL Trigger: AAGAAGACTCAAGGCGGCTTTGGTTTGTTGTGGGCATTGTGAGCTGGGGATATCAGTGTGGCCTCCCAAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
||
| CDS CCA 72 bp | ATGTCATTGTCACGAGTTACGGAGCTGTACCCGTCGTaGGCTAAAATAGCCCTTACTCTCACTCTCAGCCTA | + |
|
Preference number: 6 (lower is better) Translates to: MSLSRVTELYPS*AKIALTLTLSL Trigger: TAGGCTGAGAGTGAGAGTAAGGGCTATTTTAGCCCACGACGGGTACAGCTCCGTAACTCGTGACAATGACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS GCA 72 bp | GCCTCCATATGTGAGAGATCCCCATCCTGTAACATATaGGACAGAACCAGGGATGATATTTTGGGTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: ASICERSPSCNI*DRTRDDILGCC Trigger: GCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATATGTTACAGGATGGGGATCTCTCACATATGGAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CAA 72 bp | ATTCTGACCTCTCCTTGCCGTAGATTTGTGACTGCGTaGCCTCCATATGTGAGAGATCCCCATCCTGTAACA | + |
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Preference number: 6 (lower is better) Translates to: ILTSPCRRFVTA*PPYVRDPHPVT Trigger: TGTTACAGGATGGGGATCTCTCACATATGGAGGCAACGCAGTCACAAATCTACGGCAAGGAGAGGTCAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CAA 90 bp | CAGCCTAGGGCTCATTGTAGAAACCCCAAAGGTGGCTGTCCAATATaGAGGATTAGGATAGCTTTTGAAGCAATGAGCTGCTGTCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: QPRAHCRNPKGGCPI*RIRIAFEAMSCCQD Trigger: GTCCTGACAGCAGCTCATTGCTTCAAAAGCTATCCTAATCCTCAATATTGGACAGCCACCTTTGGGGTTTCTACAATGAGCCCTAGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CCA 72 bp | TGCGACAGAACCAGGGATGATATTTTGGGTTGCTGCTaGGAGACATACCCTATGGATATTTCTGGAAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: CDRTRDDILGCC*ETYPMDISGKG Trigger: GCCTTTTCCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CAA 90 bp | ACATACCCTATGGATATTTCTGGAAAAGGCGACAGATCTGTCAAGTaGTACAACTGCGATGTCATTGTCACGAGTTACGGAGCTGTACCC | + |
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Preference number: 6 (lower is better) Translates to: TYPMDISGKGDRSVK*YNCDVIVTSYGAVP Trigger: GGGTACAGCTCCGTAACTCGTGACAATGACATCGCAGTTGTACAACTTGACAGATCTGTCGCCTTTTCCAGAAATATCCATAGGGTATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CAA 90 bp | GAACTTATTATTCTGACCTCTCCTTGCCGTAGATTTGTGACTGCGTaGCCTCCATATGTGAGAGATCCCCATCCTGTAACATATGCGACA | + |
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Preference number: 6 (lower is better) Translates to: ELIILTSPCRRFVTA*PPYVRDPHPVTYAT Trigger: TGTCGCATATGTTACAGGATGGGGATCTCTCACATATGGAGGCAACGCAGTCACAAATCTACGGCAAGGAGAGGTCAGAATAATAAGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS GCA 72 bp | ATATTGAGGATTAGGATAGCTTTTGAAGCAATGAGCTaGTGTCAGGACCCACATGTTACTGATCAGGGCACC | + |
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Preference number: 6 (lower is better) Translates to: ILRIRIAFEAMS*CQDPHVTDQGT Trigger: GGTGCCCTGATCAGTAACATGTGGGTCCTGACAGCAGCTCATTGCTTCAAAAGCTATCCTAATCCTCAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS TCA 72 bp | CATTCGAAGGGGCTATTTCCAAGTTTCCAGAGCTGCTaGGTCTTCGTAGCACAGATTGAATTCTGGTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: HSKGLFPSFQSC*VFVAQIEFWFS Trigger: TGAAAACCAGAATTCAATCTGTGCTACGAAGACTCAGCAGCTCTGGAAACTTGGAAATAGCCCCTTCGAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
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| CDS GCA 72 bp | AACATATGCGACAGAACCAGGGATGATATTTTGGGTTaGTGCTGGGAGACATACCCTATGGATATTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: NICDRTRDDILG*CWETYPMDISG Trigger: TCCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS GCA 72 bp | TTGCATTCCTCTGAACTTATTATTCTGACCTCTCCTTaGCGTAGATTTGTGACTGCGTTGCCTCCATATGTG | + |
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Preference number: 6 (lower is better) Translates to: LHSSELIILTSP*RRFVTALPPYV Trigger: CACATATGGAGGCAACGCAGTCACAAATCTACGGCAAGGAGAGGTCAGAATAATAAGTTCAGAGGAATGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CAA 72 bp | GCTCATTGTAGAAACCCCAAAGGTGGCTGTCCAATATaGAGGATTAGGATAGCTTTTGAAGCAATGAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: AHCRNPKGGCPI*RIRIAFEAMSC Trigger: GCAGCTCATTGCTTCAAAAGCTATCCTAATCCTCAATATTGGACAGCCACCTTTGGGGTTTCTACAATGAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CAA 72 bp | TCCTGTAACATATGCGACAGAACCAGGGATGATATTTaGGGTTGCTGCTGGGAGACATACCCTATGGATATT | + |
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Preference number: 6 (lower is better) Translates to: SCNICDRTRDDI*GCCWETYPMDI Trigger: AATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATATGTTACAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS TCA 72 bp | GACAGTGTTATAAGGTCTGGACGTGCTCCACATTCTTaGGTCAAAACATTTTCTGTATCCTGGTCAGTGAGT | + |
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Preference number: 6 (lower is better) Translates to: DSVIRSGRAPHS*VKTFSVSWSVS Trigger: ACTCACTGACCAGGATACAGAAAATGTTTTGACTCAAGAATGTGGAGCACGTCCAGACCTTATAACACTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS GCA 72 bp | ATATGCGACAGAACCAGGGATGATATTTTGGGTTGCTaGTGGGAGACATACCCTATGGATATTTCTGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: ICDRTRDDILGC*WETYPMDISGK Trigger: TTTTCCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CAA 72 bp | ATGGATATTTCTGGAAAAGGCGACAGATCTGTCAAGTaGTACAACTGCGATGTCATTGTCACGAGTTACGGA | + |
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Preference number: 6 (lower is better) Translates to: MDISGKGDRSVK*YNCDVIVTSYG Trigger: TCCGTAACTCGTGACAATGACATCGCAGTTGTACAACTTGACAGATCTGTCGCCTTTTCCAGAAATATCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031175.12 ENSMUST00000122377.2 |
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| CDS CAA 90 bp | TTCATGACAACATCCGCAACCACACCAGTCCCTTCTTTTCTTAGTTaGACAACATGTGTCCTGATAAACTCACTTTTTAGACTTGATCCT | + |
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Preference number: 6 (lower is better) Translates to: FMTTSATTPVPSFLS*TTCVLINSLFRLDP Trigger: AGGATCAAGTCTAAAAAGTGAGTTTATCAGGACACATGTTGTCAAACTAAGAAAAGAAGGGACTGGTGTGGTTGCGGATGTTGTCATGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
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| CDS GCA 72 bp | AAGCCTCAGTGTATTCAACGTTTAGGATTTGAAAGCTaGTATGATAAAAGTAAGCTTTCTTGTCAAAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: KPQCIQRLGFES*YDKSKLSCQKL Trigger: TAGCTTTTGACAAGAAAGCTTACTTTTATCATAGCAGCTTTCAAATCCTAAACGTTGAATACACTGAGGCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031175.12 |
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