Pregenerated sensors for TMPRSS11C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061184Ensembl transcript IDs: ENSMUST00000059424.10, ENSMUST00000196462.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR TCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTGGACACTGTTCTGTTaGAGGCTGGCTTGCCAGGGC | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHWTLFC*RLACQG Trigger: GCCCTGGCAAGCCAGCCTTCAACAGAACAGTGTCCA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTGCAAGGCTGTCCATTaGTCTTCGCTCCTCCGAGGC | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHCKAVH*SSLLRG Trigger: GCCTCGGAGGAGCGAAGAGCAATGGACAGCCTTGCA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCCACCAGAATCACCCTaGCAGGCATCAACACGTCCC | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHPPESP*QASTRP Trigger: GGGACGTGTTGATGCCTGCCAGGGTGATTCTGGTGG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTGTTCTGTTGAAGGCTaGCTTGCCAGGGCCATTCTC | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHCSVEG*LARAIL Trigger: GAGAATGGCCCTGGCAAGCCAGCCTTCAACAGAACA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACAGCATCCTGGCCTCCTaGTACTTTGTGACCTCTATG | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHSILAS*YFVTSM Trigger: CATAGAGGTCACAAAGTAGCAGGAGGCCAGGATGCT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCCAGTCTTTGGGGTTTaGAGCCCGTATGAAACAGTG | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHPVFGV*SPYETV Trigger: CACTGTTTCATACGGGCTGCAAACCCCAAAGACTGG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGACACCAGGCTTGTTTaGAAGTGCACATTCATCGCC | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHDTRLV*KCTFIA Trigger: GGCGATGAATGTGCACTTCCAAACAAGCCTGGTGTC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCACTCTGTTCTGTTCTaGAAGGCTGTCCATTGCTCT | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHHSVLF*KAVHCS Trigger: AGAGCAATGGACAGCCTTGCAGAACAGAACAGAGTG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCCTTCCCTTTGGCTTTaGTTACTTGCACAGTGTGAG | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHPSLWL*LLAQCE Trigger: CTCACACTGTGCAAGTAAGCAAAGCCAAAGGGAAGG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTCACCACCTTCCCTTTaGCTTTGCTTACTTGCACAG | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHSPPSL*LCLLAQ Trigger: CTGTGCAAGTAAGCAAAGCCAAAGGGAAGGTGGTGA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR TCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGACCAGTTTTGGATGTaGTCCAGTCTCGATAGTATG | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHDQFWM*SSLDSM Trigger: CATACTATCGAGACTGGATCACATCCAAAACTGGTC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR TCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTGGCCTTTGAGTTTCTaGTACAAAGTGGTTTCAACG | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHWPLSF*YKVVST Trigger: CGTTGAAACCACTTTGTATCAGAAACTCAAAGGCCA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR TCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACATCCAGTTTGGCCTTTaGGTTTCTGATACAAAGTGG | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHIQFGL*VSDTKW Trigger: CCACTTTGTATCAGAAACTCAAAGGCCAAACTGGAT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR TCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTCTTGCCACACCTTGTaGGTTTTATCTTTGTTTTGC | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHSCHTL*VLSLFC Trigger: GCAAAACAAAGATAAAACTCACAAGGTGTGGCAAGA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR TCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACAGGTCCATGTATTCCTaGGAATATGGCTTTGCAAAT | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHRSMYS*EYGFAN Trigger: ATTTGCAAAGCCATATTCTCAGGAATACATGGACCT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR TCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGTCCACAACATGTATTaGGAAGATCTTCTGCTATTG | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHVHNMY*EDLLLL Trigger: CAATAGCAGAAGATCTTCTCAATACATGTTGTGGAC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGTTTCTGATACAAAGTaGTTTCAACGCTTTCCCAGT | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHVSDTK*FQRFPS Trigger: ACTGGGAAAGCGTTGAAACCACTTTGTATCAGAAAC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCTGAGAATATGGCTTTaGAAATTTGCTGTCATAGTC | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHLRIWL*KFAVIV Trigger: GACTATGACAGCAAATTTGCAAAGCCATATTCTCAG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTATGTCATTATCATGTaGAGGGTAACTGTAGTTCTC | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHYVIIM*RVTVVL Trigger: GAGAACTACAGTTACCCTGCACATGATAATGACATA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGTTTTATCTTTGTTTTaGACTCTGTTCTGTTCTGCA | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHVLSLF*TLFCSA Trigger: TGCAGAACAGAACAGAGTGCAAAACAAAGATAAAAC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR GCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACATGGCTTTGCAAATTTaGTGTCATAGTCAATGTTGT | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHMALQI*CHSQCC Trigger: ACAACATTGACTATGACAGCAAATTTGCAAAGCCAT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CCA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTTCACTTTTCCTTTCTaGAGAATATTAGGACTGTCT | + |
Preference number: 4 (lower is better) Translates to: NIFNRYATTELESTKNNHFTFPF*RILGLS Trigger: AGACAGTCCTAATATTCTCCAGAAAGGAAAAGTGAA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS TCA 90 bp | GTTCCCCACCCAGTGACCACTACATCTGAGTTGGGTGGGAACTTCTaGGTAGCTTCTGGTAGACAAGCCCTTCGGATGTTGCTTTCATAC | + |
Preference number: 5 (lower is better) Translates to: VPHPVTTTSELGGNF*VASGRQALRMLLSY Trigger: GTATGAAAGCAACATCCGAAGGGCTTGTCTACCAGAAGCTACTCAGAAGTTCCCACCCAACTCAGATGTAGTGGTCACTGGGTGGGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS CCA 90 bp | ATGCCCTTAGAATCTTCACTAACCAATGGTCCACCAGAATCACCCTaGCAGGCATCAACACGTCCCTTCAGGAACCCAGCACACATCATT | + |
Preference number: 5 (lower is better) Translates to: MPLESSLTNGPPESP*QASTRPFRNPAHII Trigger: AATGATGTGTGCTGGGTTCCTGAAGGGACGTGTTGATGCCTGCCAGGGTGATTCTGGTGGACCATTGGTTAGTGAAGATTCTAAGGGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS-3UTR CAA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCTGTTGAAGGCTGGCTaGCCAGGGCCATTCTCCTTC | + |
Preference number: 5 (lower is better) Translates to: NIFNRYATTELESTKNNHLLKAG*PGPFSF Trigger: GAAGGAGAATGGCCCTGGCAAGCCAGCCTTCAACAG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS GCA 90 bp | CAGGAACCCAGCACACATCATTCCAGGTGTGATCATGCCACCATATaGCTTTCCACTATTACAGGTCTTATTGTCTATAATCTTCACTTT | + |
Preference number: 5 (lower is better) Translates to: QEPSTHHSRCDHATI*LSTITGLIVYNLHF Trigger: AAAGTGAAGATTATAGACAATAAGACCTGTAATAGTGGAAAGGCATATGGTGGCATGATCACACCTGGAATGATGTGTGCTGGGTTCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS TCA 90 bp | TCACCACCTTCCCTTTGGCTTTGCTTACTTGCACAGTGTGAGCTTTaGCGTACTGTTTTCTCAGTTTTGATTCATGAAATGTTTCATTCA | + |
Preference number: 5 (lower is better) Translates to: SPPSLWLCLLAQCEL*RTVFSVLIHEMFHS Trigger: TGAATGAAACATTTCATGAATCAAAACTGAGAAAACAGTACGTCAAAGCTCACACTGTGCAAGTAAGCAAAGCCAAAGGGAAGGTGGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS-3UTR CAA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCAAGCCCTTCGGATGTaGCTTTCATACAATACTGGC | + |
Preference number: 5 (lower is better) Translates to: NIFNRYATTELESTKNNHQALRM*LSYNTG Trigger: GCCAGTATTGTATGAAAGCAACATCCGAAGGGCTTG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CAA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCCTGAGAATATGGCTTaGCAAATTTGCTGTCATAGT | + |
Preference number: 5 (lower is better) Translates to: NIFNRYATTELESTKNNHPENMA*QICCHS Trigger: ACTATGACAGCAAATTTGCAAAGCCATATTCTCAGG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CAA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGAAGATCTTCTGCTATaGGCATTGCAATGTCTGAAA | + |
Preference number: 5 (lower is better) Translates to: NIFNRYATTELESTKNNHEDLLL*ALQCLK Trigger: TTTCAGACATTGCAATGCCAATAGCAGAAGATCTTC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CAA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCGTCCACAACATGTATaGAGAAGATCTTCTGCTATT | + |
Preference number: 5 (lower is better) Translates to: NIFNRYATTELESTKNNHRPQHV*RRSSAI Trigger: AATAGCAGAAGATCTTCTCAATACATGTTGTGGACG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS-3UTR CAA 90 bp | AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACAGTTTTATCTTTGTTTaGCACTCTGTTCTGTTCTGC | + |
Preference number: 5 (lower is better) Translates to: NIFNRYATTELESTKNNHSFIFV*HSVLFC Trigger: GCAGAACAGAACAGAGTGCAAAACAAAGATAAAACT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059424.10 |
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CDS CAA 72 bp | TGTTTTGCACTCTGTTCTGTTCTGCAAGGCTGTCCATaGCTCTTCGCTCCTCCGAGGCTGTCCCCTTGCCAT | + |
Preference number: 6 (lower is better) Translates to: CFALCSVLQGCP*LFAPPRLSPCH Trigger: ATGGCAAGGGGACAGCCTCGGAGGAGCGAAGAGCAATGGACAGCCTTGCAGAACAGAACAGAGTGCAAAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS CCA 72 bp | GAATCTTCACTAACCAATGGTCCACCAGAATCACCCTaGCAGGCATCAACACGTCCCTTCAGGAACCCAGCA | + |
Preference number: 6 (lower is better) Translates to: ESSLTNGPPESP*QASTRPFRNPA Trigger: TGCTGGGTTCCTGAAGGGACGTGTTGATGCCTGCCAGGGTGATTCTGGTGGACCATTGGTTAGTGAAGATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS TCA 72 bp | GACTGTCTCCATCCGATTTTAACGTTCCCCACCCAGTaGCCACTACATCTGAGTTGGGTGGGAACTTCTGAG | + |
Preference number: 6 (lower is better) Translates to: DCLHPILTFPTQ*PLHLSWVGTSE Trigger: CTCAGAAGTTCCCACCCAACTCAGATGTAGTGGTCACTGGGTGGGGAACGTTAAAATCGGATGGAGACAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS CCA 72 bp | GAGGAACCAGATGCCCTTAGAATCTTCACTAACCAATaGTCCACCAGAATCACCCTGGCAGGCATCAACACG | + |
Preference number: 6 (lower is better) Translates to: EEPDALRIFTNQ*STRITLAGINT Trigger: CGTGTTGATGCCTGCCAGGGTGATTCTGGTGGACCATTGGTTAGTGAAGATTCTAAGGGCATCTGGTTCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS GCA 72 bp | AAGAAACCCAAAGCTAACTTTCCAGTCTTTGGGGTTTaGAGCCCGTATGAAACAGTGAGCAGCAGTGATAAG | + |
Preference number: 6 (lower is better) Translates to: KKPKANFPVFGV*SPYETVSSSDK Trigger: CTTATCACTGCTGCTCACTGTTTCATACGGGCTGCAAACCCCAAAGACTGGAAAGTTAGCTTTGGGTTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS CAA 72 bp | AGCATGTATCACCACCTTCCCTTTGGCTTTGCTTACTaGCACAGTGTGAGCTTTGACGTACTGTTTTCTCAG | + |
Preference number: 6 (lower is better) Translates to: SMYHHLPFGFAY*HSVSFDVLFSQ Trigger: CTGAGAAAACAGTACGTCAAAGCTCACACTGTGCAAGTAAGCAAAGCCAAAGGGAAGGTGGTGATACATGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |
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CDS TCA 72 bp | GAGTCTATAAGTAATCCAGTTTGGCCTTTGAGTTTCTaGTACAAAGTGGTTTCAACGCTTTCCCAGTATTTT | + |
Preference number: 6 (lower is better) Translates to: ESISNPVWPLSF*YKVVSTLSQYF Trigger: AAAATACTGGGAAAGCGTTGAAACCACTTTGTATCAGAAACTCAAAGGCCAAACTGGATTACTTATAGACTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059424.10 ENSMUST00000196462.2 |