RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMPRSS11C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061184

Ensembl transcript IDs: ENSMUST00000059424.10, ENSMUST00000196462.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTGGACACTGTTCTGTTaGAGGCTGGCTTGCCAGGGC +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHWTLFC*RLACQG
Trigger: GCCCTGGCAAGCCAGCCTTCAACAGAACAGTGTCCA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTGCAAGGCTGTCCATTaGTCTTCGCTCCTCCGAGGC +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHCKAVH*SSLLRG
Trigger: GCCTCGGAGGAGCGAAGAGCAATGGACAGCCTTGCA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCCACCAGAATCACCCTaGCAGGCATCAACACGTCCC +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHPPESP*QASTRP
Trigger: GGGACGTGTTGATGCCTGCCAGGGTGATTCTGGTGG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTGTTCTGTTGAAGGCTaGCTTGCCAGGGCCATTCTC +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHCSVEG*LARAIL
Trigger: GAGAATGGCCCTGGCAAGCCAGCCTTCAACAGAACA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACAGCATCCTGGCCTCCTaGTACTTTGTGACCTCTATG +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHSILAS*YFVTSM
Trigger: CATAGAGGTCACAAAGTAGCAGGAGGCCAGGATGCT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCCAGTCTTTGGGGTTTaGAGCCCGTATGAAACAGTG +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHPVFGV*SPYETV
Trigger: CACTGTTTCATACGGGCTGCAAACCCCAAAGACTGG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGACACCAGGCTTGTTTaGAAGTGCACATTCATCGCC +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHDTRLV*KCTFIA
Trigger: GGCGATGAATGTGCACTTCCAAACAAGCCTGGTGTC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCACTCTGTTCTGTTCTaGAAGGCTGTCCATTGCTCT +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHHSVLF*KAVHCS
Trigger: AGAGCAATGGACAGCCTTGCAGAACAGAACAGAGTG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCCTTCCCTTTGGCTTTaGTTACTTGCACAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHPSLWL*LLAQCE
Trigger: CTCACACTGTGCAAGTAAGCAAAGCCAAAGGGAAGG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTCACCACCTTCCCTTTaGCTTTGCTTACTTGCACAG +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHSPPSL*LCLLAQ
Trigger: CTGTGCAAGTAAGCAAAGCCAAAGGGAAGGTGGTGA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR TCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGACCAGTTTTGGATGTaGTCCAGTCTCGATAGTATG +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHDQFWM*SSLDSM
Trigger: CATACTATCGAGACTGGATCACATCCAAAACTGGTC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR TCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTGGCCTTTGAGTTTCTaGTACAAAGTGGTTTCAACG +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHWPLSF*YKVVST
Trigger: CGTTGAAACCACTTTGTATCAGAAACTCAAAGGCCA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR TCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACATCCAGTTTGGCCTTTaGGTTTCTGATACAAAGTGG +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHIQFGL*VSDTKW
Trigger: CCACTTTGTATCAGAAACTCAAAGGCCAAACTGGAT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR TCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTCTTGCCACACCTTGTaGGTTTTATCTTTGTTTTGC +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHSCHTL*VLSLFC
Trigger: GCAAAACAAAGATAAAACTCACAAGGTGTGGCAAGA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR TCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACAGGTCCATGTATTCCTaGGAATATGGCTTTGCAAAT +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHRSMYS*EYGFAN
Trigger: ATTTGCAAAGCCATATTCTCAGGAATACATGGACCT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR TCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGTCCACAACATGTATTaGGAAGATCTTCTGCTATTG +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHVHNMY*EDLLLL
Trigger: CAATAGCAGAAGATCTTCTCAATACATGTTGTGGAC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGTTTCTGATACAAAGTaGTTTCAACGCTTTCCCAGT +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHVSDTK*FQRFPS
Trigger: ACTGGGAAAGCGTTGAAACCACTTTGTATCAGAAAC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCTGAGAATATGGCTTTaGAAATTTGCTGTCATAGTC +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHLRIWL*KFAVIV
Trigger: GACTATGACAGCAAATTTGCAAAGCCATATTCTCAG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTATGTCATTATCATGTaGAGGGTAACTGTAGTTCTC +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHYVIIM*RVTVVL
Trigger: GAGAACTACAGTTACCCTGCACATGATAATGACATA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGTTTTATCTTTGTTTTaGACTCTGTTCTGTTCTGCA +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHVLSLF*TLFCSA
Trigger: TGCAGAACAGAACAGAGTGCAAAACAAAGATAAAAC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR GCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACATGGCTTTGCAAATTTaGTGTCATAGTCAATGTTGT +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHMALQI*CHSQCC
Trigger: ACAACATTGACTATGACAGCAAATTTGCAAAGCCAT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CCA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACTTCACTTTTCCTTTCTaGAGAATATTAGGACTGTCT +
Preference number: 4 (lower is better)
Translates to: NIFNRYATTELESTKNNHFTFPF*RILGLS
Trigger: AGACAGTCCTAATATTCTCCAGAAAGGAAAAGTGAA...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS TCA 90 bp GTTCCCCACCCAGTGACCACTACATCTGAGTTGGGTGGGAACTTCTaGGTAGCTTCTGGTAGACAAGCCCTTCGGATGTTGCTTTCATAC +
Preference number: 5 (lower is better)
Translates to: VPHPVTTTSELGGNF*VASGRQALRMLLSY
Trigger: GTATGAAAGCAACATCCGAAGGGCTTGTCTACCAGAAGCTACTCAGAAGTTCCCACCCAACTCAGATGTAGTGGTCACTGGGTGGGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS CCA 90 bp ATGCCCTTAGAATCTTCACTAACCAATGGTCCACCAGAATCACCCTaGCAGGCATCAACACGTCCCTTCAGGAACCCAGCACACATCATT +
Preference number: 5 (lower is better)
Translates to: MPLESSLTNGPPESP*QASTRPFRNPAHII
Trigger: AATGATGTGTGCTGGGTTCCTGAAGGGACGTGTTGATGCCTGCCAGGGTGATTCTGGTGGACCATTGGTTAGTGAAGATTCTAAGGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS-3UTR CAA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCTGTTGAAGGCTGGCTaGCCAGGGCCATTCTCCTTC +
Preference number: 5 (lower is better)
Translates to: NIFNRYATTELESTKNNHLLKAG*PGPFSF
Trigger: GAAGGAGAATGGCCCTGGCAAGCCAGCCTTCAACAG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS GCA 90 bp CAGGAACCCAGCACACATCATTCCAGGTGTGATCATGCCACCATATaGCTTTCCACTATTACAGGTCTTATTGTCTATAATCTTCACTTT +
Preference number: 5 (lower is better)
Translates to: QEPSTHHSRCDHATI*LSTITGLIVYNLHF
Trigger: AAAGTGAAGATTATAGACAATAAGACCTGTAATAGTGGAAAGGCATATGGTGGCATGATCACACCTGGAATGATGTGTGCTGGGTTCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS TCA 90 bp TCACCACCTTCCCTTTGGCTTTGCTTACTTGCACAGTGTGAGCTTTaGCGTACTGTTTTCTCAGTTTTGATTCATGAAATGTTTCATTCA +
Preference number: 5 (lower is better)
Translates to: SPPSLWLCLLAQCEL*RTVFSVLIHEMFHS
Trigger: TGAATGAAACATTTCATGAATCAAAACTGAGAAAACAGTACGTCAAAGCTCACACTGTGCAAGTAAGCAAAGCCAAAGGGAAGGTGGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS-3UTR CAA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCAAGCCCTTCGGATGTaGCTTTCATACAATACTGGC +
Preference number: 5 (lower is better)
Translates to: NIFNRYATTELESTKNNHQALRM*LSYNTG
Trigger: GCCAGTATTGTATGAAAGCAACATCCGAAGGGCTTG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CAA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCCTGAGAATATGGCTTaGCAAATTTGCTGTCATAGT +
Preference number: 5 (lower is better)
Translates to: NIFNRYATTELESTKNNHPENMA*QICCHS
Trigger: ACTATGACAGCAAATTTGCAAAGCCATATTCTCAGG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CAA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACGAAGATCTTCTGCTATaGGCATTGCAATGTCTGAAA +
Preference number: 5 (lower is better)
Translates to: NIFNRYATTELESTKNNHEDLLL*ALQCLK
Trigger: TTTCAGACATTGCAATGCCAATAGCAGAAGATCTTC...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CAA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACCGTCCACAACATGTATaGAGAAGATCTTCTGCTATT +
Preference number: 5 (lower is better)
Translates to: NIFNRYATTELESTKNNHRPQHV*RRSSAI
Trigger: AATAGCAGAAGATCTTCTCAATACATGTTGTGGACG...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS-3UTR CAA 90 bp AACATATTTAACAGATATGCAACCACTGAGCTTGAATCTACAAAGAACAACCACAGTTTTATCTTTGTTTaGCACTCTGTTCTGTTCTGC +
Preference number: 5 (lower is better)
Translates to: NIFNRYATTELESTKNNHSFIFV*HSVLFC
Trigger: GCAGAACAGAACAGAGTGCAAAACAAAGATAAAACT...GTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059424.10
CDS CAA 72 bp TGTTTTGCACTCTGTTCTGTTCTGCAAGGCTGTCCATaGCTCTTCGCTCCTCCGAGGCTGTCCCCTTGCCAT +
Preference number: 6 (lower is better)
Translates to: CFALCSVLQGCP*LFAPPRLSPCH
Trigger: ATGGCAAGGGGACAGCCTCGGAGGAGCGAAGAGCAATGGACAGCCTTGCAGAACAGAACAGAGTGCAAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS CCA 72 bp GAATCTTCACTAACCAATGGTCCACCAGAATCACCCTaGCAGGCATCAACACGTCCCTTCAGGAACCCAGCA +
Preference number: 6 (lower is better)
Translates to: ESSLTNGPPESP*QASTRPFRNPA
Trigger: TGCTGGGTTCCTGAAGGGACGTGTTGATGCCTGCCAGGGTGATTCTGGTGGACCATTGGTTAGTGAAGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS TCA 72 bp GACTGTCTCCATCCGATTTTAACGTTCCCCACCCAGTaGCCACTACATCTGAGTTGGGTGGGAACTTCTGAG +
Preference number: 6 (lower is better)
Translates to: DCLHPILTFPTQ*PLHLSWVGTSE
Trigger: CTCAGAAGTTCCCACCCAACTCAGATGTAGTGGTCACTGGGTGGGGAACGTTAAAATCGGATGGAGACAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS CCA 72 bp GAGGAACCAGATGCCCTTAGAATCTTCACTAACCAATaGTCCACCAGAATCACCCTGGCAGGCATCAACACG +
Preference number: 6 (lower is better)
Translates to: EEPDALRIFTNQ*STRITLAGINT
Trigger: CGTGTTGATGCCTGCCAGGGTGATTCTGGTGGACCATTGGTTAGTGAAGATTCTAAGGGCATCTGGTTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS GCA 72 bp AAGAAACCCAAAGCTAACTTTCCAGTCTTTGGGGTTTaGAGCCCGTATGAAACAGTGAGCAGCAGTGATAAG +
Preference number: 6 (lower is better)
Translates to: KKPKANFPVFGV*SPYETVSSSDK
Trigger: CTTATCACTGCTGCTCACTGTTTCATACGGGCTGCAAACCCCAAAGACTGGAAAGTTAGCTTTGGGTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS CAA 72 bp AGCATGTATCACCACCTTCCCTTTGGCTTTGCTTACTaGCACAGTGTGAGCTTTGACGTACTGTTTTCTCAG +
Preference number: 6 (lower is better)
Translates to: SMYHHLPFGFAY*HSVSFDVLFSQ
Trigger: CTGAGAAAACAGTACGTCAAAGCTCACACTGTGCAAGTAAGCAAAGCCAAAGGGAAGGTGGTGATACATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2
CDS TCA 72 bp GAGTCTATAAGTAATCCAGTTTGGCCTTTGAGTTTCTaGTACAAAGTGGTTTCAACGCTTTCCCAGTATTTT +
Preference number: 6 (lower is better)
Translates to: ESISNPVWPLSF*YKVVSTLSQYF
Trigger: AAAATACTGGGAAAGCGTTGAAACCACTTTGTATCAGAAACTCAAAGGCCAAACTGGATTACTTATAGACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059424.10
ENSMUST00000196462.2