Pregenerated sensors for TMIE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049555Ensembl transcript IDs: ENSMUST00000050958.9
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTCCCAGGGTCTCAGTCCCCAGCTCTGGTCAGAGCTCCTCATTTTaGTGCTGGAAGCGCCTTGTAGATCTCTCCTCTCTAGAGCCAGCG | + |
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Preference number: 1 (lower is better) Translates to: LPRVSVPSSGQSSSF*CWKRLVDLSSLEPA Trigger: CGCTGGCTCTAGAGAGGAGAGATCTACAAGGCGCTTCCAGCATCAAAATGAGGAGCTCTGACCAGAGCTGGGGACTGAGACCCTGGGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR TCA 90 bp | GGCAGAAGTGGACCCACACACCACTATGTTCAGCAGGCAGATGGCTaGCTGCTGCCATCATCAGAGAGTCCTGGCCATAGAAAAGGCAAC | + |
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Preference number: 1 (lower is better) Translates to: GRSGPTHHYVQQADG*LLPSSESPGHRKGN Trigger: GTTGCCTTTTCTATGGCCAGGACTCTCTGATGATGGCAGCAGTCAGCCATCTGCCTGCTGAACATAGTGGTGTGTGGGTCCACTTCTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CCA 90 bp | GGCTTTCCACCTGGAAAGTCTTCCCAGGGTCTCAGTCCCCAGCTCTaGTCAGAGCTCCTCATTTTGATGCTGGAAGCGCCTTGTAGATCT | + |
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Preference number: 1 (lower is better) Translates to: GFPPGKSSQGLSPQL*SELLILMLEAPCRS Trigger: AGATCTACAAGGCGCTTCCAGCATCAAAATGAGGAGCTCTGACCAGAGCTGGGGACTGAGACCCTGGGAAGACTTTCCAGGTGGAAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 90 bp | CCTCAGGTCTGTCACACTGTTACCTTGTTTTCAAAGCTTTGTATCTaGCAGGTCAGGGACTCTCCTGCTAATGGGGCCACCCTAGCAGCC | + |
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Preference number: 1 (lower is better) Translates to: PQVCHTVTLFSKLCI*QVRDSPANGATLAA Trigger: GGCTGCTAGGGTGGCCCCATTAGCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTGTGACAGACCTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 90 bp | CCTGCTAATGGGGCCACCCTAGCAGCCAACTTGGGGCAATCTCCTTaGTATTTGAGGCGGCTATCTAGCTATGTCAGAGAATCTCTCACA | + |
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Preference number: 1 (lower is better) Translates to: PANGATLAANLGQSP*YLRRLSSYVRESLT Trigger: TGTGAGAGATTCTCTGACATAGCTAGATAGCCGCCTCAAATAGCAAGGAGATTGCCCCAAGTTGGCTGCTAGGGTGGCCCCATTAGCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 90 bp | TTGAGGCCACTCTATAACTATGGAAGGACAGTGGCCAATGAGAAGTaGCAGATGGATGATGTGACAGGAACAGAGCCCAGGATGGACACT | + |
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Preference number: 1 (lower is better) Translates to: LRPLYNYGRTVANEK*QMDDVTGTEPRMDT Trigger: AGTGTCCATCCTGGGCTCTGTTCCTGTCACATCATCCATCTGGCACTTCTCATTGGCCACTGTCCTTCCATAGTTATAGAGTGGCCTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 90 bp | TCCATGTATGAACACGAAGTCCTGATGCCCGGATCCGGCCTGAACTaGTGCTTCAGGGCCTGCCAGCCCCGGCTGCCACCTCAGGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: SMYEHEVLMPGSGLN*CFRACQPRLPPQEA Trigger: GGCTTCCTGAGGTGGCAGCCGGGGCTGGCAGGCCCTGAAGCACAAGTTCAGGCCGGATCCGGGCATCAGGACTTCGTGTTCATACATGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR GCA 90 bp | GTATTGTTGTGTCACTTCTACAGGAGTCCCCAAGGGCCTGACAAAGCATGGGGCTTGTGCTTCAGGGCCTaGCAGCCCCGGCTGCCACCT | + |
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Preference number: 2 (lower is better) Translates to: VLLCHFYRSPQGPDKAWGLCFRA*QPRLPP Trigger: AGGTGGCAGCCGGGGCTGGCAGGCCCTGAAGCACAA...GCCCCATGCTTTGTCAGGCCCTTGGGGACTCCTGTAGAAGTGACACAACAATAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR GCA 90 bp | CAGTCTTGCCATCCTAAACGACCAGTCCCTGACTCCTTCACAGCCACTTCTGCCTCCGGCCTGAACTTGTaGTTCAGGGCCTGCCAGCCC | + |
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Preference number: 2 (lower is better) Translates to: QSCHPKRPVPDSFTATSASGLNL*FRACQP Trigger: GGGCTGGCAGGCCCTGAAGCACAAGTTCAGGCCGGA...GGCAGAAGTGGCTGTGAAGGAGTCAGGGACTGGTCGTTTAGGATGGCAAGACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 90 bp | CAGGTCAGGGACTCTCCTGCTAATGGGGCCACCCTAGCAGCCAACTaGGGGCAATCTCCTTGCTATTTGAGGCGGCTATCTAGCTATGTC | + |
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Preference number: 2 (lower is better) Translates to: QVRDSPANGATLAAN*GQSPCYLRRLSSYV Trigger: GACATAGCTAGATAGCCGCCTCAAATAGCAAGGAGATTGCCCCAAGTTGGCTGCTAGGGTGGCCCCATTAGCAGGAGAGTCCCTGACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR TCA 90 bp | AGCAGGCTTTCCACCTGGAAAGTCTTCCCAGGGTCTCAGTCCCCAGCTCTGGTCACGGGGAGAGGAGTTTaGGGCCACTCTATAACTATG | + |
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Preference number: 2 (lower is better) Translates to: SRLSTWKVFPGSQSPALVTGRGV*GHSITM Trigger: CATAGTTATAGAGTGGCCTCAAACTCCTCTCCCCGT...GACCAGAGCTGGGGACTGAGACCCTGGGAAGACTTTCCAGGTGGAAAGCCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 90 bp | ACAGAGCCCAGGATGGACACTAGTGAAGTCTTGTCCCTACATCTTTaGGGCCATGAGGTAACGGACCATGGCCTTGGCTTCCCCTTGGAC | + |
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Preference number: 2 (lower is better) Translates to: TEPRMDTSEVLSLHL*GHEVTDHGLGFPLD Trigger: GTCCAAGGGGAAGCCAAGGCCATGGTCCGTTACCTCATGGCCCAAAAGATGTAGGGACAAGACTTCACTAGTGTCCATCCTGGGCTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR TCA 90 bp | CCTGACTCCTTCACAGCCACTTCTGCCCCTAGCAAGAAAGGTGGGATGGAAGCTACATCTTTTGGGCCATaGGGTAACGGACCATGGCCT | + |
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Preference number: 2 (lower is better) Translates to: PDSFTATSAPSKKGGMEATSFGP*GNGPWP Trigger: AGGCCATGGTCCGTTACCTCATGGCCCAAAAGATGT...AGCTTCCATCCCACCTTTCTTGCTAGGGGCAGAAGTGGCTGTGAAGGAGTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR TCA 90 bp | CCTGACTCCTTCACAGCCACTTCTGCCCCTAGCAAGAAAGGTGGGATGGAAGCTGAAGTGCCAGATGGATaGTGTGACAGGAACAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: PDSFTATSAPSKKGGMEAEVPDG*CDRNRA Trigger: GGCTCTGTTCCTGTCACATCATCCATCTGGCACTTC...AGCTTCCATCCCACCTTTCTTGCTAGGGGCAGAAGTGGCTGTGAAGGAGTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR CCA 90 bp | CACTGTTACCTTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACTCTCCTGCGCCTTGGCTTCCCCTTaGACCACCGCCTCTGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: HCYLVFKALYLPGQGLSCALASP*TTASAV Trigger: GACTGCAGAGGCGGTGGTCCAAGGGGAAGCCAAGGC...GCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR CCA 90 bp | CCTGACTCCTTCACAGCCACTTCTGCCCCTAGCAAGAAAGGTGGGATGGAAGCTGAACAGAGCCCAGGATaGACACTAGTGAAGTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: PDSFTATSAPSKKGGMEAEQSPG*TLVKSC Trigger: ACAAGACTTCACTAGTGTCCATCCTGGGCTCTGTTC...AGCTTCCATCCCACCTTTCTTGCTAGGGGCAGAAGTGGCTGTGAAGGAGTCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR CCA 90 bp | CTCCTCATTTTGATGCTGGAAGCGCCTTGTAGATCTCTCCTCTCTAGAGCCAGCTGTTCAGCAGGCAGATaGCTGACTGCTGCCATCATC | + |
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Preference number: 2 (lower is better) Translates to: LLILMLEAPCRSLLSRASCSAGR*LTAAII Trigger: GATGATGGCAGCAGTCAGCCATCTGCCTGCTGAACA...GCTGGCTCTAGAGAGGAGAGATCTACAAGGCGCTTCCAGCATCAAAATGAGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 90 bp | AATGGGGCCACCCTAGCAGCCAACTTGGGGCAATCTCCTTGCTATTaGAGGCGGCTATCTAGCTATGTCAGAGAATCTCTCACATCACAA | + |
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Preference number: 2 (lower is better) Translates to: NGATLAANLGQSPCY*RRLSSYVRESLTSQ Trigger: TTGTGATGTGAGAGATTCTCTGACATAGCTAGATAGCCGCCTCAAATAGCAAGGAGATTGCCCCAAGTTGGCTGCTAGGGTGGCCCCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR CCA 90 bp | GTCTGTCACACTGTTACCTTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACGCAAGAAAGGTGGGATaGAAGCTTGTCTGGACGGGG | + |
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Preference number: 2 (lower is better) Translates to: VCHTVTLFSKLCICQVRDARKVG*KLVWTG Trigger: CCCCGTCCAGACAAGCTTCCATCCCACCTTTCTTGC...GTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTGTGACAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR GCA 90 bp | TTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACTCTCCTGCTAATGGGGCCGTGGCCAATGAGAAGTaGCAGATGGATGATGTGACA | + |
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Preference number: 2 (lower is better) Translates to: LFSKLCICQVRDSPANGAVANEK*QMDDVT Trigger: TGTCACATCATCCATCTGGCACTTCTCATTGGCCAC...GGCCCCATTAGCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR TCA 90 bp | CTGAGGCGCCTTTTATTATGTATTGTTGTGTCACTTCTACAGGAGTCCCCAAGGCAGAGCTCCTCATTTTaGTGCTGGAAGCGCCTTGTA | + |
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Preference number: 2 (lower is better) Translates to: LRRLLLCIVVSLLQESPRQSSSF*CWKRLV Trigger: TACAAGGCGCTTCCAGCATCAAAATGAGGAGCTCTG...CCTTGGGGACTCCTGTAGAAGTGACACAACAATACATAATAAAAGGCGCCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR GCA 90 bp | CTGAGGCGCCTTTTATTATGTATTGTTGTGTCACTTCTACAGGAGTCCCCAAGGCAACCTGTTCAGTCTTaGCATCCTAAACGACCAGTC | + |
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Preference number: 2 (lower is better) Translates to: LRRLLLCIVVSLLQESPRQPVQS*HPKRPV Trigger: GACTGGTCGTTTAGGATGGCAAGACTGAACAGGTTG...CCTTGGGGACTCCTGTAGAAGTGACACAACAATACATAATAAAAGGCGCCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR CCA 90 bp | GTGGCCTCAGGTCTGTCACACTGTTACCTTGTTTTCAAAGCTTTGTATCTGCCACTCCCTCCCTGTTTTTaGACAACCTGTTCAGTCTTG | + |
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Preference number: 2 (lower is better) Translates to: VASGLSHCYLVFKALYLPLPPCF*TTCSVL Trigger: CAAGACTGAACAGGTTGTCCAAAAACAGGGAGGGAG...TGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTGTGACAGACCTGAGGCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 72 bp | CACGAAGTCCTGATGCCCGGATCCGGCCTGAACTTGTaGTTCAGGGCCTGCCAGCCCCGGCTGCCACCTCAG | + |
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Preference number: 3 (lower is better) Translates to: HEVLMPGSGLNL*FRACQPRLPPQ Trigger: CTGAGGTGGCAGCCGGGGCTGGCAGGCCCTGAAGCACAAGTTCAGGCCGGATCCGGGCATCAGGACTTCGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR TCA 72 bp | GCTTCCCCTTGGACCACCGCCTCTGCAGTCCATGTATaGACACGAAGTCCTGATGCCCGGATCCGGCCTGAA | + |
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Preference number: 3 (lower is better) Translates to: ASPWTTASAVHV*TRSPDARIRPE Trigger: TTCAGGCCGGATCCGGGCATCAGGACTTCGTGTTCATACATGGACTGCAGAGGCGGTGGTCCAAGGGGAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CCA 72 bp | CCTGGAAAGTCTTCCCAGGGTCTCAGTCCCCAGCTCTaGTCAGAGCTCCTCATTTTGATGCTGGAAGCGCCT | + |
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Preference number: 3 (lower is better) Translates to: PGKSSQGLSPQL*SELLILMLEAP Trigger: AGGCGCTTCCAGCATCAAAATGAGGAGCTCTGACCAGAGCTGGGGACTGAGACCCTGGGAAGACTTTCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CCA 72 bp | AAGTGGACCCACACACCACTATGTTCAGCAGGCAGATaGCTGACTGCTGCCATCATCAGAGAGTCCTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: KWTHTPLCSAGR*LTAAIIRESWP Trigger: TGGCCAGGACTCTCTGATGATGGCAGCAGTCAGCCATCTGCCTGCTGAACATAGTGGTGTGTGGGTCCACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR CAA 90 bp | GTCTGTCACACTGTTACCTTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACGGCCTTGGCTTCCCCTaGGACCACCGCCTCTGCAGT | + |
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Preference number: 3 (lower is better) Translates to: VCHTVTLFSKLCICQVRDGLGFP*DHRLCS Trigger: ACTGCAGAGGCGGTGGTCCAAGGGGAAGCCAAGGCC...GTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTGTGACAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR TCA 72 bp | GTGGGATGGAAGCTTGTCTGGACGGGGAGAGGAGTTTaGGGCCACTCTATAACTATGGAAGGACAGTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: VGWKLVWTGRGV*GHSITMEGQWP Trigger: TGGCCACTGTCCTTCCATAGTTATAGAGTGGCCTCAAACTCCTCTCCCCGTCCAGACAAGCTTCCATCCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 72 bp | GGGGCCACCCTAGCAGCCAACTTGGGGCAATCTCCTTaGTATTTGAGGCGGCTATCTAGCTATGTCAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: GATLAANLGQSP*YLRRLSSYVRE Trigger: TTCTCTGACATAGCTAGATAGCCGCCTCAAATAGCAAGGAGATTGCCCCAAGTTGGCTGCTAGGGTGGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR CAA 90 bp | GTGGCCTCAGGTCTGTCACACTGTTACCTTGTTTTCAAAGCTTTGTATCTGCCAGGATCCGGCCTGAACTaGTGCTTCAGGGCCTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: VASGLSHCYLVFKALYLPGSGLN*CFRACQ Trigger: CTGGCAGGCCCTGAAGCACAAGTTCAGGCCGGATCC...TGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTGTGACAGACCTGAGGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR TCA 72 bp | GGACAGTGGCCAATGAGAAGTGCCAGATGGATGATGTaGCAGGAACAGAGCCCAGGATGGACACTAGTGAAG | + |
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Preference number: 3 (lower is better) Translates to: GQWPMRSARWMM*QEQSPGWTLVK Trigger: CTTCACTAGTGTCCATCCTGGGCTCTGTTCCTGTCACATCATCCATCTGGCACTTCTCATTGGCCACTGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR TCA 72 bp | GTCTCAGTCCCCAGCTCTGGTCAGAGCTCCTCATTTTaGTGCTGGAAGCGCCTTGTAGATCTCTCCTCTCTA | + |
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Preference number: 3 (lower is better) Translates to: VSVPSSGQSSSF*CWKRLVDLSSL Trigger: TAGAGAGGAGAGATCTACAAGGCGCTTCCAGCATCAAAATGAGGAGCTCTGACCAGAGCTGGGGACTGAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 72 bp | CCCTCCCTCCCTGTTTTTGGACAACCTGTTCAGTCTTaGCATCCTAAACGACCAGTCCCTGACTCCTTCACA | + |
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Preference number: 3 (lower is better) Translates to: PSLPVFGQPVQS*HPKRPVPDSFT Trigger: TGTGAAGGAGTCAGGGACTGGTCGTTTAGGATGGCAAGACTGAACAGGTTGTCCAAAAACAGGGAGGGAGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 72 bp | CACACCACTATGTTCAGCAGGCAGATGGCTGACTGCTaGCATCATCAGAGAGTCCTGGCCATAGAAAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: HTTMFSRQMADC*HHQRVLAIEKA Trigger: TGCCTTTTCTATGGCCAGGACTCTCTGATGATGGCAGCAGTCAGCCATCTGCCTGCTGAACATAGTGGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CCA 72 bp | ATTTCCTCCGGATACCTTTTTAGCAGGCTTTCCACCTaGAAAGTCTTCCCAGGGTCTCAGTCCCCAGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: ISSGYLFSRLST*KVFPGSQSPAL Trigger: CAGAGCTGGGGACTGAGACCCTGGGAAGACTTTCCAGGTGGAAAGCCTGCTAAAAAGGTATCCGGAGGAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 72 bp | CTCTATAACTATGGAAGGACAGTGGCCAATGAGAAGTaGCAGATGGATGATGTGACAGGAACAGAGCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: LYNYGRTVANEK*QMDDVTGTEPR Trigger: CCTGGGCTCTGTTCCTGTCACATCATCCATCTGGCACTTCTCATTGGCCACTGTCCTTCCATAGTTATAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR GCA 72 bp | TGTCACACTGTTACCTTGTTTTCAAAGCTTTGTATCTaGCAGGTCAGGGACTCTCCTGCTAATGGGGCCACC | + |
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Preference number: 3 (lower is better) Translates to: CHTVTLFSKLCI*QVRDSPANGAT Trigger: GGTGGCCCCATTAGCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTGTGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR-3UTR CAA 90 bp | CTGCTGCCATCATCAGAGAGTCCTGGCCATAGAAAAGGCAACTGTAGTAGTCCGTGTCACACTGTTACCTaGTTTTCAAAGCTTTGTATC | + |
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Preference number: 3 (lower is better) Translates to: LLPSSESPGHRKGNCSSPCHTVT*FSKLCI Trigger: GATACAAAGCTTTGAAAACAAGGTAACAGTGTGACA...CGGACTACTACAGTTGCCTTTTCTATGGCCAGGACTCTCTGATGATGGCAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CCA 90 bp | GCCCGGATCCGGCCTGAACTTGTGCTTCAGGGCCTGCCAGCCCCGGCTGCCACCCTCCTTCCGCGTCCGTaGCACCCGGCAGTTGAAGAC | + |
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Preference number: 4 (lower is better) Translates to: ARIRPELVLQGLPAPAATLLPRP*HPAVED Trigger: GTCTTCAACTGCCGGGTGCCACGGACGCGGAAGGAG...GGTGGCAGCCGGGGCTGGCAGGCCCTGAAGCACAAGTTCAGGCCGGATCCGGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | GAACACGAAGTCCTGATGCCCGGATCCGGCCTGAACTaGTGCTTCAGGGCCTGCCAGCCCCGGCTGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: EHEVLMPGSGLN*CFRACQPRLPP Trigger: AGGTGGCAGCCGGGGCTGGCAGGCCCTGAAGCACAAGTTCAGGCCGGATCCGGGCATCAGGACTTCGTGTTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | GGCCATGAGGTAACGGACCATGGCCTTGGCTTCCCCTaGGACCACCGCCTCTGCAGTCCATGTATGAACACG | + |
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Preference number: 4 (lower is better) Translates to: GHEVTDHGLGFP*DHRLCSPCMNT Trigger: CGTGTTCATACATGGACTGCAGAGGCGGTGGTCCAAGGGGAAGCCAAGGCCATGGTCCGTTACCTCATGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR GCA 90 bp | CCCCTTGGACCACCGCCTCTGCAGTCCATGTATGAACACGAAGTCCTGATGCCCCGAAGAGCGAAAAGATaGCCACCACGTGCCACAGGC | + |
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Preference number: 4 (lower is better) Translates to: PLGPPPLQSMYEHEVLMPRRAKR*PPRATG Trigger: GCCTGTGGCACGTGGTGGGCATCTTTTCGCTCTTCG...GGGCATCAGGACTTCGTGTTCATACATGGACTGCAGAGGCGGTGGTCCAAGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CCA 90 bp | TTCAGCAGGCAGATGGCTGACTGCTGCCATCATCAGAGAGTCCTGGCCATAGAAACACCACAGTCTCCTTaGTCAGTGGGGGCGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: FSRQMADCCHHQRVLAIETPQSP*SVGAAW Trigger: CCAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGT...TTCTATGGCCAGGACTCTCTGATGATGGCAGCAGTCAGCCATCTGCCTGCTGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CCA 90 bp | GTAACGGACCATGGCCTTGGCTTCCCCTTGGACCACCGCCTCTGCAGTCCATGTTGTCTGTGTACATCTTaGCCGCCTTTCGCTGTAGAT | + |
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Preference number: 4 (lower is better) Translates to: VTDHGLGFPLDHRLCSPCCLCTS*PPFAVD Trigger: ATCTACAGCGAAAGGCGGCCAAGATGTACACAGACA...ACATGGACTGCAGAGGCGGTGGTCCAAGGGGAAGCCAAGGCCATGGTCCGTTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | GGTGGGATGGAAGCTTGTCTGGACGGGGAGAGGAGTTaGAGGCCACTCTATAACTATGGAAGGACAGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: GGMEACLDGERS*RPLYNYGRTVA Trigger: GGCCACTGTCCTTCCATAGTTATAGAGTGGCCTCAAACTCCTCTCCCCGTCCAGACAAGCTTCCATCCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | GACTCTCCTGCTAATGGGGCCACCCTAGCAGCCAACTaGGGGCAATCTCCTTGCTATTTGAGGCGGCTATCT | + |
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Preference number: 4 (lower is better) Translates to: DSPANGATLAAN*GQSPCYLRRLS Trigger: AGATAGCCGCCTCAAATAGCAAGGAGATTGCCCCAAGTTGGCTGCTAGGGTGGCCCCATTAGCAGGAGAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | GTAGTCCGCGCTGGTGCCCTGCGACTTAAGTATTTCTaGATTCCCATGAGGAGGTCCAGGCTCACTCACTTC | + |
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Preference number: 4 (lower is better) Translates to: VVRAGALRLKYF*IPMRRSRLTHF Trigger: GAAGTGAGTGAGCCTGGACCTCCTCATGGGAATCAAGAAATACTTAAGTCGCAGGGCACCAGCGCGGACTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR GCA 90 bp | CACTGTTACCTTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACTCTCCTGCAAGATGCCCACCACGTaGCACAGGCGCATGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: HCYLVFKALYLPGQGLSCKMPTT*HRRMSQ Trigger: CTGGGACATGCGCCTGTGGCACGTGGTGGGCATCTT...GCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CCA 90 bp | CACTGTTACCTTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACTCTCCTGCAGTCTCCTTGGTCAGTaGGGGCGGCTTGGGCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: HCYLVFKALYLPGQGLSCSLLGQ*GRLGLW Trigger: CCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACT...GCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | GCCCCTCAGTGGCCTCAGGTCTGTCACACTGTTACCTaGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: APQWPQVCHTVT*FSKLCICQVRD Trigger: GTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTGTGACAGACCTGAGGCCACTGAGGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | AGGATGGACACTAGTGAAGTCTTGTCCCTACATCTTTaGGGCCATGAGGTAACGGACCATGGCCTTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: RMDTSEVLSLHL*GHEVTDHGLGF Trigger: GAAGCCAAGGCCATGGTCCGTTACCTCATGGCCCAAAAGATGTAGGGACAAGACTTCACTAGTGTCCATCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | ACAGGAACAGAGCCCAGGATGGACACTAGTGAAGTCTaGTCCCTACATCTTTTGGGCCATGAGGTAACGGAC | + |
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Preference number: 4 (lower is better) Translates to: TGTEPRMDTSEV*SLHLLGHEVTD Trigger: GTCCGTTACCTCATGGCCCAAAAGATGTAGGGACAAGACTTCACTAGTGTCCATCCTGGGCTCTGTTCCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| 3UTR CAA 72 bp | ACCCTAGCAGCCAACTTGGGGCAATCTCCTTGCTATTaGAGGCGGCTATCTAGCTATGTCAGAGAATCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TLAANLGQSPCY*RRLSSYVRESL Trigger: GAGAGATTCTCTGACATAGCTAGATAGCCGCCTCAAATAGCAAGGAGATTGCCCCAAGTTGGCTGCTAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS GCA 90 bp | GGGGGCGGCTTGGGCTTTGGCGGTGCGGTGCTGGGCTCTACCAGCTaGGTGGCGACACCCGCCAGGCAAGCCCCCAGCGCGGCGCCGCCC | + |
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Preference number: 5 (lower is better) Translates to: GGGLGFGGAVLGSTS*VATPARQAPSAAPP Trigger: GGGCGGCGCCGCGCTGGGGGCTTGCCTGGCGGGTGTCGCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CCA 90 bp | GCGGCTTGGGCTTTGGCGGTGCGGTGCTGGGCTCTACCAGCTGCGTaGCGACACCCGCCAGGCAAGCCCCCAGCGCGGCGCCGCCCAGCG | + |
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Preference number: 5 (lower is better) Translates to: AAWALAVRCWALPAA*RHPPGKPPARRRPA Trigger: CGCTGGGCGGCGCCGCGCTGGGGGCTTGCCTGGCGGGTGTCGCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CAA 90 bp | CCTGATGCCCGGATCCGGCCTGAACTTGTGCTTCAGGGCCTGCCAGCCCCGGCTGGGGCGGCTTGGGCTTaGGCGGTGCGGTGCTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: PDARIRPELVLQGLPAPAGAAWA*AVRCWA Trigger: AGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCC...AGCCGGGGCTGGCAGGCCCTGAAGCACAAGTTCAGGCCGGATCCGGGCATCAGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CCA 90 bp | CCAGAACACCACAGTCTCCTTGGTCAGTGGGGGCGGCTTGGGCTTTaGCGGTGCGGTGCTGGGCTCTACCAGCTGCGTGGCGACACCCGC | + |
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Preference number: 5 (lower is better) Translates to: PEHHSLLGQWGRLGL*RCGAGLYQLRGDTR Trigger: GCGGGTGTCGCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGTTCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CCA 90 bp | CCACCACGTGCCACAGGCGCATGTCCCAGAACACCACAGTCTCCTTaGTCAGTGGGGGCGGCTTGGGCTTTGGCGGTGCGGTGCTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: PPRATGACPRTPQSP*SVGAAWALAVRCWA Trigger: AGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGTTCTGGGACATGCGCCTGTGGCACGTGGTGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CCA 90 bp | GCATGTCCCAGAACACCACAGTCTCCTTGGTCAGTGGGGGCGGCTTaGGCTTTGGCGGTGCGGTGCTGGGCTCTACCAGCTGCGTGGCGA | + |
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Preference number: 5 (lower is better) Translates to: ACPRTPQSPWSVGAA*ALAVRCWALPAAWR Trigger: TCGCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGTTCTGGGACATGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CAA 90 bp | GTCTGTCACACTGTTACCTTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACGTCAGTGGGGGCGGCTaGGGCTTTGGCGGTGCGGTG | + |
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Preference number: 5 (lower is better) Translates to: VCHTVTLFSKLCICQVRDVSGGG*GFGGAV Trigger: CACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGAC...GTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAAGGTAACAGTGTGACAGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CAA 90 bp | TTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACTCTCCTGCTAATGGGGCCAACACCACAGTCTCCTaGGTCAGTGGGGGCGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: LFSKLCICQVRDSPANGANTTVS*VSGGGL Trigger: CAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGTT...GGCCCCATTAGCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CAA 90 bp | TTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACTCTCCTGCTAATGGGGCCTTGTCTGTGTACATCTaGGCCGCCTTTCGCTGTAGA | + |
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Preference number: 5 (lower is better) Translates to: LFSKLCICQVRDSPANGALSVYI*AAFRCR Trigger: TCTACAGCGAAAGGCGGCCAAGATGTACACAGACAA...GGCCCCATTAGCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CAA 90 bp | CTGAGGCGCCTTTTATTATGTATTGTTGTGTCACTTCTACAGGAGTCCCCAAGGGGCACAGTCTCCAGCTaGTCTGTGTACATCTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: LRRLLLCIVVSLLQESPRGTVSS*SVYILA Trigger: GGCCAAGATGTACACAGACAAGCTGGAGACTGTGCC...CCTTGGGGACTCCTGTAGAAGTGACACAACAATACATAATAAAAGGCGCCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS-3UTR CAA 90 bp | TTGTTTTCAAAGCTTTGTATCTGCCAGGTCAGGGACTCTCCTGCTAATGGGGCCTTCTTCTTTTTCTTCTaGTCCTCTCCAGGGATTTCT | + |
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Preference number: 5 (lower is better) Translates to: LFSKLCICQVRDSPANGAFFFFF*SSPGIS Trigger: AGAAATCCCTGGAGAGGACAAGAAGAAAAAGAAGAA...GGCCCCATTAGCAGGAGAGTCCCTGACCTGGCAGATACAAAGCTTTGAAAACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CCA 72 bp | GCTTTGGCGGTGCGGTGCTGGGCTCTACCAGCTGCGTaGCGACACCCGCCAGGCAAGCCCCCAGCGCGGCGC | + |
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Preference number: 6 (lower is better) Translates to: ALAVRCWALPAA*RHPPGKPPARR Trigger: GCGCCGCGCTGGGGGCTTGCCTGGCGGGTGTCGCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS GCA 72 bp | TTGGGCTTTGGCGGTGCGGTGCTGGGCTCTACCAGCTaGGTGGCGACACCCGCCAGGCAAGCCCCCAGCGCG | + |
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Preference number: 6 (lower is better) Translates to: LGFGGAVLGSTS*VATPARQAPSA Trigger: CGCGCTGGGGGCTTGCCTGGCGGGTGTCGCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CAA 90 bp | CCCAGAACACCACAGTCTCCTTGGTCAGTGGGGGCGGCTTGGGCTTaGGCGGTGCGGTGCTGGGCTCTACCAGCTGCGTGGCGACACCCG | + |
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Preference number: 6 (lower is better) Translates to: PRTPQSPWSVGAAWA*AVRCWALPAAWRHP Trigger: CGGGTGTCGCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGTTCTGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CAA 90 bp | CCCACCACGTGCCACAGGCGCATGTCCCAGAACACCACAGTCTCCTaGGTCAGTGGGGGCGGCTTGGGCTTTGGCGGTGCGGTGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: PTTCHRRMSQNTTVS*VSGGGLGFGGAVLG Trigger: GCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGTTCTGGGACATGCGCCTGTGGCACGTGGTGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CCA 72 bp | CACAGTCTCCTTGGTCAGTGGGGGCGGCTTGGGCTTTaGCGGTGCGGTGCTGGGCTCTACCAGCTGCGTGGC | + |
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Preference number: 6 (lower is better) Translates to: HSLLGQWGRLGL*RCGAGLYQLRG Trigger: GCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CAA 72 bp | CCACAGTCTCCTTGGTCAGTGGGGGCGGCTTGGGCTTaGGCGGTGCGGTGCTGGGCTCTACCAGCTGCGTGG | + |
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Preference number: 6 (lower is better) Translates to: PQSPWSVGAAWA*AVRCWALPAAW Trigger: CCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CAA 90 bp | CGCATGTCCCAGAACACCACAGTCTCCTTGGTCAGTGGGGGCGGCTaGGGCTTTGGCGGTGCGGTGCTGGGCTCTACCAGCTGCGTGGCG | + |
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Preference number: 6 (lower is better) Translates to: RMSQNTTVSLVSGGG*GFGGAVLGSTSCVA Trigger: CGCCACGCAGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGTTCTGGGACATGCG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CCA 72 bp | AGAACACCACAGTCTCCTTGGTCAGTGGGGGCGGCTTaGGCTTTGGCGGTGCGGTGCTGGGCTCTACCAGCT | + |
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Preference number: 6 (lower is better) Translates to: RTPQSPWSVGAA*ALAVRCWALPA Trigger: AGCTGGTAGAGCCCAGCACCGCACCGCCAAAGCCCAAGCCGCCCCCACTGACCAAGGAGACTGTGGTGTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CCA 72 bp | GGGGAGGCACAGTCTCCAGCTTGTCTGTGTACATCTTaGCCGCCTTTCGCTGTAGATACCGAGCCTCGATCT | + |
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Preference number: 6 (lower is better) Translates to: GEAQSPACLCTS*PPFAVDTEPRS Trigger: AGATCGAGGCTCGGTATCTACAGCGAAAGGCGGCCAAGATGTACACAGACAAGCTGGAGACTGTGCCTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CAA 72 bp | AGGGGAGGCACAGTCTCCAGCTTGTCTGTGTACATCTaGGCCGCCTTTCGCTGTAGATACCGAGCCTCGATC | + |
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Preference number: 6 (lower is better) Translates to: RGGTVSSLSVYI*AAFRCRYRASI Trigger: GATCGAGGCTCGGTATCTACAGCGAAAGGCGGCCAAGATGTACACAGACAAGCTGGAGACTGTGCCTCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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| CDS CAA 90 bp | AGTTCATTAAGGGGAGGCACAGTCTCCAGCTTGTCTGTGTACATCTaGGCCGCCTTTCGCTGTAGATACCGAGCCTCGATCTCCTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: SSLRGGTVSSLSVYI*AAFRCRYRASISFR Trigger: GCGGAAGGAGATCGAGGCTCGGTATCTACAGCGAAAGGCGGCCAAGATGTACACAGACAAGCTGGAGACTGTGCCTCCCCTTAATGAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050958.9 |
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