Pregenerated sensors for TMEM98 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035413Ensembl transcript IDs: ENSMUST00000040865.9
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACTCTCCAGCCACTGTTTGCCATTGCAGCAGAGCCTGTCCAGCGTaGGGCTCTCGGCTTTACCCTGCACCCAGGGCTGGCCGACAGAGC | + |
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Preference number: 1 (lower is better) Translates to: HSPATVCHCSRACPA*GSRLYPAPRAGRQS Trigger: GCTCTGTCGGCCAGCCCTGGGTGCAGGGTAAAGCCGAGAGCCTCACGCTGGACAGGCTCTGCTGCAATGGCAAACAGTGGCTGGAGAGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR TCA 90 bp | CTCTCAATTCTTAGAGGGCAACTCGATTTTCTTGGAAACATTAAATaGACTAAATGTAGCAGCGAGCCCGGCAGCTTTCTGCGCTCTGCT | + |
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Preference number: 1 (lower is better) Translates to: LSILRGQLDFLGNIK*TKCSSEPGSFLRSA Trigger: AGCAGAGCGCAGAAAGCTGCCGGGCTCGCTGCTACATTTAGTTCATTTAATGTTTCCAAGAAAATCGAGTTGCCCTCTAAGAATTGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR TCA 90 bp | TCCATGTTGCCACGCCTTGATTTTCAGAAGCCGGAAATTCTAATTTaGTATGAAGTCTCTCAATTCTTAGAGGGCAACTCGATTTTCTTG | + |
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Preference number: 1 (lower is better) Translates to: SMLPRLDFQKPEILI*YEVSQFLEGNSIFL Trigger: CAAGAAAATCGAGTTGCCCTCTAAGAATTGAGAGACTTCATATCAAATTAGAATTTCCGGCTTCTGAAAATCAAGGCGTGGCAACATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR CAA 90 bp | CCTAACTGTGGGATTACACTGCCACTCTCCAGCCACTGTTTGCCATaGCAGCAGAGCCTGTCCAGCGTGAGGCTCTCGGCTTTACCCTGC | + |
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Preference number: 2 (lower is better) Translates to: PNCGITLPLSSHCLP*QQSLSSVRLSALPC Trigger: GCAGGGTAAAGCCGAGAGCCTCACGCTGGACAGGCTCTGCTGCAATGGCAAACAGTGGCTGGAGAGTGGCAGTGTAATCCCACAGTTAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR-3UTR TCA 90 bp | ACTAAATGTAGCAGCGAGCCCGGCAGCTTTCTGCGCTCTGCTGTAGAGGTACACAGAGCCTGTCCAGCGTaGGGCTCTCGGCTTTACCCT | + |
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Preference number: 2 (lower is better) Translates to: TKCSSEPGSFLRSAVEVHRACPA*GSRLYP Trigger: AGGGTAAAGCCGAGAGCCTCACGCTGGACAGGCTCT...GTGTACCTCTACAGCAGAGCGCAGAAAGCTGCCGGGCTCGCTGCTACATTTAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR-3UTR GCA 90 bp | ATTTTCTTGGAAACATTAAATGAACTAAATGTAGCAGCGAGCCCGGCAGCTTTCCTCTCGGCTTTACCCTaGACCCAGGGCTGGCCGACA | + |
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Preference number: 2 (lower is better) Translates to: IFLETLNELNVAASPAAFLSALP*TQGWPT Trigger: TGTCGGCCAGCCCTGGGTGCAGGGTAAAGCCGAGAG...GAAAGCTGCCGGGCTCGCTGCTACATTTAGTTCATTTAATGTTTCCAAGAAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR-3UTR TCA 90 bp | GCTTCTAACACAAATGGGAAAGCGGAAGATACATGGGAAGCGGGGTGGGGGTGGCTTGGAAACATTAAATaGACTAAATGTAGCAGCGAG | + |
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Preference number: 2 (lower is better) Translates to: ASNTNGKAEDTWEAGWGWLGNIK*TKCSSE Trigger: CTCGCTGCTACATTTAGTTCATTTAATGTTTCCAAG...CCACCCCCACCCCGCTTCCCATGTATCTTCCGCTTTCCCATTTGTGTTAGAAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR TCA 72 bp | GCCACTGTTTGCCATTGCAGCAGAGCCTGTCCAGCGTaGGGCTCTCGGCTTTACCCTGCACCCAGGGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: ATVCHCSRACPA*GSRLYPAPRAG Trigger: GCCAGCCCTGGGTGCAGGGTAAAGCCGAGAGCCTCACGCTGGACAGGCTCTGCTGCAATGGCAAACAGTGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR-3UTR CAA 90 bp | TTGAGGAAAACAGAAGAACAAGTTTACTATTCGCCTGGTGGTTGTAAAGCGAAAAGCCACTGTTTGCCATaGCAGCAGAGCCTGTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: LRKTEEQVYYSPGGCKAKSHCLP*QQSLSS Trigger: GCTGGACAGGCTCTGCTGCAATGGCAAACAGTGGCT...TTTCGCTTTACAACCACCAGGCGAATAGTAAACTTGTTCTTCTGTTTTCCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR TCA 72 bp | CTTAGAGGGCAACTCGATTTTCTTGGAAACATTAAATaGACTAAATGTAGCAGCGAGCCCGGCAGCTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: LRGQLDFLGNIK*TKCSSEPGSFL Trigger: CAGAAAGCTGCCGGGCTCGCTGCTACATTTAGTTCATTTAATGTTTCCAAGAAAATCGAGTTGCCCTCTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR TCA 72 bp | CCACGCCTTGATTTTCAGAAGCCGGAAATTCTAATTTaGTATGAAGTCTCTCAATTCTTAGAGGGCAACTCG | + |
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Preference number: 3 (lower is better) Translates to: PRLDFQKPEILI*YEVSQFLEGNS Trigger: CGAGTTGCCCTCTAAGAATTGAGAGACTTCATATCAAATTAGAATTTCCGGCTTCTGAAAATCAAGGCGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR GCA 90 bp | ACTCTCCAGCCACTGTTTGCCATTGCAGCAGAGCCTGTCCAGCGTGAGGCTCTCTCGGAGGGTTCAGACTaGGTCTCCATAGCACCAATG | + |
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Preference number: 4 (lower is better) Translates to: TLQPLFAIAAEPVQREALSEGSD*VSIAPM Trigger: CATTGGTGCTATGGAGACGCAGTCTGAACCCTCCGA...GAGAGCCTCACGCTGGACAGGCTCTGCTGCAATGGCAAACAGTGGCTGGAGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR GCA 90 bp | ACTAAATGTAGCAGCGAGCCCGGCAGCTTTCTGCGCTCTGCTGTAGAGGTACACCGAAGGACTTCCAGGTaGTCCTCAGCGGCAGACAGT | + |
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Preference number: 4 (lower is better) Translates to: TKCSSEPGSFLRSAVEVHRRTSR*SSAADS Trigger: ACTGTCTGCCGCTGAGGAGCACCTGGAAGTCCTTCG...GTGTACCTCTACAGCAGAGCGCAGAAAGCTGCCGGGCTCGCTGCTACATTTAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR GCA 90 bp | CTGCGCTCTGCTGTAGAGGTACACAGCGTCTCCCCTAACTGTGGGATTACACTGATGGCCGACTGTTCCTaGAGGAAGCCCTCAGGGTTG | + |
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Preference number: 4 (lower is better) Translates to: LRSAVEVHSVSPNCGITLMADCS*RKPSGL Trigger: CAACCCTGAGGGCTTCCTGCAGGAACAGTCGGCCAT...CAGTGTAATCCCACAGTTAGGGGAGACGCTGTGTACCTCTACAGCAGAGCGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR CCA 90 bp | ACTAAATGTAGCAGCGAGCCCGGCAGCTTTCTGCGCTCTGCTGTAGAGGTACACGTGCATCCAGGAGCTTaGGGTCCAGTGGAGGGTACA | + |
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Preference number: 4 (lower is better) Translates to: TKCSSEPGSFLRSAVEVHVHPGA*GPVEGT Trigger: TGTACCCTCCACTGGACCCCAAGCTCCTGGATGCAC...GTGTACCTCTACAGCAGAGCGCAGAAAGCTGCCGGGCTCGCTGCTACATTTAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR CCA 90 bp | ACTAAATGTAGCAGCGAGCCCGGCAGCTTTCTGCGCTCTGCTGTAGAGGTACACGCGGCAGACAGTGATTaGTCAATCCAGTCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: TKCSSEPGSFLRSAVEVHAADSD*SIQSRP Trigger: GGGCCTGGACTGGATTGACCAATCACTGTCTGCCGC...GTGTACCTCTACAGCAGAGCGCAGAAAGCTGCCGGGCTCGCTGCTACATTTAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR CAA 72 bp | AACTGTGGGATTACACTGCCACTCTCCAGCCACTGTTaGCCATTGCAGCAGAGCCTGTCCAGCGTGAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: NCGITLPLSSHC*PLQQSLSSVRL Trigger: GAGCCTCACGCTGGACAGGCTCTGCTGCAATGGCAAACAGTGGCTGGAGAGTGGCAGTGTAATCCCACAGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR TCA 90 bp | TCAGCTTCTAACACAAATGGGAAAGCGGAAGATACATGGGAAGCGGGGTGGGGGCTCAGCGGCAGACAGTaGTTGGTCAATCCAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SASNTNGKAEDTWEAGWGLSGRQ*LVNPVQ Trigger: CTGGACTGGATTGACCAATCACTGTCTGCCGCTGAG...CCCCCACCCCGCTTCCCATGTATCTTCCGCTTTCCCATTTGTGTTAGAAGCTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR TCA 90 bp | TTTCCTCAGCTTCTAACACAAATGGGAAAGCGGAAGATACATGGGAAGCGGGGTCACCAAAGCAGCAAATaGGGCCAGGAAAATGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: FPQLLTQMGKRKIHGKRGHQSSK*GQENGG Trigger: GCCACCATTTTCCTGGCCTCATTTGCTGCTTTGGTG...ACCCCGCTTCCCATGTATCTTCCGCTTTCCCATTTGTGTTAGAAGCTGAGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR CCA 90 bp | GAAACAATTGACTTCGCATTTCCTCAGCTTCTAACACAAATGGGAAAGCGGAAGGGGGAGGCTTTTATCTaGCTCAGAAGCCAGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: ETIDFAFPQLLTQMGKRKGEAFI*LRSQGC Trigger: GCAGCCCTGGCTTCTGAGCCAGATAAAAGCCTCCCC...CTTCCGCTTTCCCATTTGTGTTAGAAGCTGAGGAAATGCGAAGTCAATTGTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR CCA 90 bp | ATTTTCTTGGAAACATTAAATGAACTAAATGTAGCAGCGAGCCCGGCAGCTTTCGGTCCACGATGGGCTTaGAATCATAACGCTGTAGTA | + |
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Preference number: 4 (lower is better) Translates to: IFLETLNELNVAASPAAFGPRWA*NHNAVV Trigger: TACTACAGCGTTATGATTCCAAGCCCATCGTGGACC...GAAAGCTGCCGGGCTCGCTGCTACATTTAGTTCATTTAATGTTTCCAAGAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| 3UTR CAA 72 bp | GAAGTCTCTCAATTCTTAGAGGGCAACTCGATTTTCTaGGAAACATTAAATGAACTAAATGTAGCAGCGAGC | + |
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Preference number: 4 (lower is better) Translates to: EVSQFLEGNSIF*ETLNELNVAAS Trigger: GCTCGCTGCTACATTTAGTTCATTTAATGTTTCCAAGAAAATCGAGTTGCCCTCTAAGAATTGAGAGACTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR CAA 90 bp | ACTAAATGTAGCAGCGAGCCCGGCAGCTTTCTGCGCTCTGCTGTAGAGGTACACGCTGACGTCTTCATCTaGGCCCCAGAACCCATTGTC | + |
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Preference number: 5 (lower is better) Translates to: TKCSSEPGSFLRSAVEVHADVFI*APEPIV Trigger: GACAATGGGTTCTGGGGCCAAGATGAAGACGTCAGC...GTGTACCTCTACAGCAGAGCGCAGAAAGCTGCCGGGCTCGCTGCTACATTTAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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| CDS-3UTR CAA 90 bp | GAAACATTAAATGAACTAAATGTAGCAGCGAGCCCGGCAGCTTTCTGCGCTCTGAGGAAGCCCTCAGGGTaGGGGAGGCTTTTATCTGGC | + |
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Preference number: 5 (lower is better) Translates to: ETLNELNVAASPAAFCALRKPSG*GRLLSG Trigger: GCCAGATAAAAGCCTCCCCAACCCTGAGGGCTTCCT...CAGAGCGCAGAAAGCTGCCGGGCTCGCTGCTACATTTAGTTCATTTAATGTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040865.9 |
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