RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM8B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078716

Ensembl transcript IDs: ENSMUST00000107864.8, ENSMUST00000107865.9, ENSMUST00000107866.9, ENSMUST00000143339.8, ENSMUST00000167153.8

Found 331 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTaGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAA +
Preference number: 1 (lower is better)
Translates to: SGFMLCLGSHSRTSM*HRPGVQELGAKQTE
Trigger: TTCTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CCA 90 bp GTGGTGCCTTCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTaGCACTTCAGCTTCCTTCTCTGTGGGTGTAGGCGTCATGGGGAG +
Preference number: 1 (lower is better)
Translates to: VVPSMLKFVPVTLIS*HFSFLLCGCRRHGE
Trigger: CTCCCCATGACGCCTACACCCACAGAGAAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGAAGGCACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CCA 90 bp GGTTGTGAAGAGAGTAGAAAGGACTTAAGGCACAGAGAGAAGAATTaGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGACAAGTGGG +
Preference number: 1 (lower is better)
Translates to: GCEESRKDLRHREKN*GKCEAGSFSSLTSG
Trigger: CCCACTTGTCAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCTTAAGTCCTTTCTACTCTCTTCACAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR GCA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGCTCCTGCAGCCCTTCTaGCCAGCACTGCTAAGCCAC +
Preference number: 2 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQLLQPF*PALLSH
Trigger: GTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAG...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATGTCCCTGTACCTAGGTaGGCTCCACAGCCCCAGGAG +
Preference number: 2 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHVPVPR*APQPQE
Trigger: CTCCTGGGGCTGTGGAGCCCACCTAGGTACAGGGAC...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR GCA 90 bp ATTAACTCACCAGCTCCTAGCCCCAGAATGCTGGGGTTAAAGGCATGCACCACCTCCCTCTCTCTCTCCTaGAGCCCTTCTGCCCAGCAC +
Preference number: 2 (lower is better)
Translates to: INSPAPSPRMLGLKACTTSLSLS*SPSAQH
Trigger: GTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGA...GGTGGTGCATGCCTTTAACCCCAGCATTCTGGGGCTAGGAGCTGGTGAGTTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp CCCGTGACTTGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTAGGGTTCCCTATCCCTaGGAAGAGCTCCACACCCCT +
Preference number: 2 (lower is better)
Translates to: PVTCFSRIDPFSLCTDDIRVPYP*EELHTP
Trigger: AGGGGTGTGGAGCTCTTCCCAGGGATAGGGAACCCT...AATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACAAGTCACGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR TCA 90 bp GGGGCTAAGCAGACAGAACACGAAGCCTCTCAGCATTTAGCAGCCTGTCTGACTGGACCCAGAGGAACATaGGATCTGAGCCAGAACAAA +
Preference number: 2 (lower is better)
Translates to: GAKQTEHEASQHLAACLTGPRGT*DLSQNK
Trigger: TTTGTTCTGGCTCAGATCTCATGTTCCTCTGGGTCC...AGTCAGACAGGCTGCTAAATGCTGAGAGGCTTCGTGTTCTGTCTGCTTAGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR GCA 90 bp ACCTGGCCCAAGAATAGCACTTTTAATACAGGAAGAGACACCCAGCCTGTATACGAGGAGGGGAGAAGGTaGGAGCACTGTCCCAGGTTG +
Preference number: 2 (lower is better)
Translates to: TWPKNSTFNTGRDTQPVYEEGRR*EHCPRL
Trigger: CAACCTGGGACAGTGCTCGCACCTTCTCCCCTCCTC...GTATACAGGCTGGGTGTCTCTTCCTGTATTAAAAGTGCTATTCTTGGGCCAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAGTCCCTGTACCTAGGTaGGCTCCACAGCCCCAGGAG +
Preference number: 2 (lower is better)
Translates to: CRRHGESVSLIHLCIYTAVPVPR*APQPQE
Trigger: CTCCTGGGGCTGTGGAGCCCACCTAGGTACAGGGAC...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR TCA 90 bp CCCGTGACTTGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTAAGCCTCCTGCTCCCTaGAAACAGTCATCCTTGAGA +
Preference number: 2 (lower is better)
Translates to: PVTCFSRIDPFSLCTDDIKPPAP*KQSSLR
Trigger: TCTCAAGGATGACTGTTTTCAGGGAGCAGGAGGCTT...AATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACAAGTCACGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR TCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACATTTTCCCACACCCTaGCCCCCAACAAGGGAAAAA +
Preference number: 2 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRHFPTP*PPTREK
Trigger: TTTTTCCCTTGTTGGGGGTCAGGGTGTGGGAAAATG...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp AGGACCCAGAGGAACATGAGATCTGAGCCAGAACAAACTATATACATAGTGAGAGTCCCTGTACCTAGGTaGGCTCCACAGCCCCAGGAG +
Preference number: 2 (lower is better)
Translates to: RTQRNMRSEPEQTIYIVRVPVPR*APQPQE
Trigger: CTCCTGGGGCTGTGGAGCCCACCTAGGTACAGGGAC...TCTCACTATGTATATAGTTTGTTCTGGCTCAGATCTCATGTTCCTCTGGGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp TCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTGGCACTTCAGCTTCCTTGTCCCTGTACCTAGGTaGGCTCCACAGCCCCAGGAG +
Preference number: 2 (lower is better)
Translates to: SMLKFVPVTLISWHFSFLVPVPR*APQPQE
Trigger: CTCCTGGGGCTGTGGAGCCCACCTAGGTACAGGGAC...AAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp GGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCTAGGATCCATAGCAATTaGGAAATGGGCATTGGGGAG +
Preference number: 2 (lower is better)
Translates to: GFMLCLGSHSRTSMWHRPRIHSN*EMGIGE
Trigger: CTCCCCAATGCCCATTTCCCAATTGCTATGGATCCT...AGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CAA 90 bp AAAACAGTCATCCTTGAGAAAGACTGTGTCATTAAGAAACACTACTaGTCCCTGTACCTAGGTGGGCTCCACAGCCCCAGGAGGAACCCT +
Preference number: 2 (lower is better)
Translates to: KTVILEKDCVIKKHY*SLYLGGLHSPRRNP
Trigger: AGGGTTCCTCCTGGGGCTGTGGAGCCCACCTAGGTACAGGGACAAGTAGTGTTTCTTAATGACACAGTCTTTCTCAAGGATGACTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR GCA 90 bp TCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTGGCACTTCAGCTTCCTTCTCCTGCAGCCCTTCTaGCCAGCACTGCTAAGCCAC +
Preference number: 2 (lower is better)
Translates to: SMLKFVPVTLISWHFSFLLLQPF*PALLSH
Trigger: GTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAG...AAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR GCA 90 bp GAACAGCAATGCATGCTCGTAATTGCTGGGCCATTTCTTCAGCCATTTTATTTTCTCCTGCAGCCCTTCTaGCCAGCACTGCTAAGCCAC +
Preference number: 2 (lower is better)
Translates to: EQQCMLVIAGPFLQPFYFLLQPF*PALLSH
Trigger: GTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAG...AAAATAAAATGGCTGAAGAAATGGCCCAGCAATTACGAGCATGCATTGCTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
3UTR-3UTR GCA 90 bp GAACAGCAATGCATGCTCGTAATTGCTGGGCCATTTCTTCAGCCATTTTATTTTTCCCTCTCTCTCTCCTaGAGCCCTTCTGCCCAGCAC +
Preference number: 2 (lower is better)
Translates to: EQQCMLVIAGPFLQPFYFSLSLS*SPSAQH
Trigger: GTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGA...AAAATAAAATGGCTGAAGAAATGGCCCAGCAATTACGAGCATGCATTGCTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
3UTR-3UTR CCA 90 bp TCCAGCATCGTCTCCAGGAAGGTCCCTGTCACTCTCAGGATTTCCTCAGTGTCCGACATTTTGTCTCCTTaGGAAGTATCTCATGTCTGT +
Preference number: 2 (lower is better)
Translates to: SSIVSRKVPVTLRISSVSDILSP*EVSHVC
Trigger: ACAGACATGAGATACTTCCCAAGGAGACAAAATGTC...GGACACTGAGGAAATCCTGAGAGTGACAGGGACCTTCCTGGAGACGATGCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp ACCTGGCCCAAGAATAGCACTTTTAATACAGGAAGAGACACCCAGCCTGTATACCAGTACACACTTCACTaGAGACATAGCAGGCTCCGC +
Preference number: 2 (lower is better)
Translates to: TWPKNSTFNTGRDTQPVYQYTLH*RHSRLR
Trigger: GCGGAGCCTGCTATGTCTCCAGTGAAGTGTGTACTG...GTATACAGGCTGGGTGTCTCTTCCTGTATTAAAAGTGCTATTCTTGGGCCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CAA 90 bp TGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTTaGTCTCCTTGGGAAGTATCTCATGTCTGTAGGAGGGTTCCCTAT +
Preference number: 2 (lower is better)
Translates to: CFSRIDPFSLCTDDI*SPWEVSHVCRRVPY
Trigger: ATAGGGAACCCTCCTACAGACATGAGATACTTCCCAAGGAGACAAAATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR TCA 90 bp TGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGCACACGCACAACACAGGGACCAGATaGGAGGGATACTGGTGTACA +
Preference number: 2 (lower is better)
Translates to: WGVCLTNSSLYIHSKHTHNTGTR*EGYWCT
Trigger: TGTACACCAGTATCCCTCTCATCTGGTCCCTGTGTT...GTGCGTGTGCTTGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGAAGGATCCATAGCAATTaGGAAATGGGCATTGGGGAG +
Preference number: 2 (lower is better)
Translates to: HSWPISQLLYSVLSASGRRIHSN*EMGIGE
Trigger: CTCCCCAATGCCCATTTCCCAATTGCTATGGATCCT...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR TCA 90 bp AGGACCCAGAGGAACATGAGATCTGAGCCAGAACAAACTATATACATAGTGAGAAAGCCTCCTGCTCCCTaGAAACAGTCATCCTTGAGA +
Preference number: 2 (lower is better)
Translates to: RTQRNMRSEPEQTIYIVRKPPAP*KQSSLR
Trigger: TCTCAAGGATGACTGTTTTCAGGGAGCAGGAGGCTT...TCTCACTATGTATATAGTTTGTTCTGGCTCAGATCTCATGTTCCTCTGGGTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR TCA 90 bp GCCAGAACAAACTATATACATAGTGAGAGCCTCTCTCTCTTTCCTCCTTTCTCTAAGCCTCCTGCTCCCTaGAAACAGTCATCCTTGAGA +
Preference number: 2 (lower is better)
Translates to: ARTNYIHSESLSLFPPFSKPPAP*KQSSLR
Trigger: TCTCAAGGATGACTGTTTTCAGGGAGCAGGAGGCTT...AGAGAAAGGAGGAAAGAGAGAGAGGCTCTCACTATGTATATAGTTTGTTCTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGGATCCATAGCAATTaGGAAATGGGCATTGGGGAG +
Preference number: 2 (lower is better)
Translates to: CRRHGESVSLIHLCIYTARIHSN*EMGIGE
Trigger: CTCCCCAATGCCCATTTCCCAATTGCTATGGATCCT...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp ACCTGGCCCAAGAATAGCACTTTTAATACAGGAAGAGACACCCAGCCTGTATACGTATTTTCTAGGCTTTaGGCTTCAAAGGCCTGGGTT +
Preference number: 2 (lower is better)
Translates to: TWPKNSTFNTGRDTQPVYVFSRL*ASKAWV
Trigger: AACCCAGGCCTTTGAAGCCCAAAGCCTAGAAAATAC...GTATACAGGCTGGGTGTCTCTTCCTGTATTAAAAGTGCTATTCTTGGGCCAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CCA 90 bp TCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTGGCACTTCAGCTTCCTTATAGCAATTGGGAAATaGGCATTGGGGAGTATTTGG +
Preference number: 2 (lower is better)
Translates to: SMLKFVPVTLISWHFSFLIAIGK*ALGSIW
Trigger: CCAAATACTCCCCAATGCCCATTTCCCAATTGCTAT...AAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR GCA 72 bp TCTCCCTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTaGCCAGCACTGCTAAGCCACTGGAAAAATCCCGTG +
Preference number: 3 (lower is better)
Translates to: SPSLPLSLLQPF*PALLSHWKNPV
Trigger: CACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAGGGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CCA 72 bp GAAGTATCTCATGTCTGTAGGAGGGTTCCCTATCCCTaGGAAGAGCTCCACACCCCTAGGGATTCCCTGGTC +
Preference number: 3 (lower is better)
Translates to: EVSHVCRRVPYP*EELHTPRDSLV
Trigger: GACCAGGGAATCCCTAGGGGTGTGGAGCTCTTCCCAGGGATAGGGAACCCTCCTACAGACATGAGATACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CCA 72 bp CTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTaGAAAAATCCCGTGACTTGTTTCTCCAGGATCGAC +
Preference number: 3 (lower is better)
Translates to: LLQPFCPALLSH*KNPVTCFSRID
Trigger: GTCGATCCTGGAGAAACAAGTCACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CCA 72 bp ATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTaGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAG +
Preference number: 3 (lower is better)
Translates to: MLCLGSHSRTSM*HRPGVQELGAK
Trigger: CTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp GGGAGTGGGGAGGAGGGGAGAAGGTGCGAGCACTGTCCCAGGTTGCTAAAGAGAATTAAGAAACACTACTaGTCCCTGTACCTAGGTGGG +
Preference number: 3 (lower is better)
Translates to: GSGEEGRRCEHCPRLLKRIKKHY*SLYLGG
Trigger: CCCACCTAGGTACAGGGACAAGTAGTGTTTCTTAAT...TCTCTTTAGCAACCTGGGACAGTGCTCGCACCTTCTCCCCTCCTCCCCACTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR TCA 72 bp GGACTTAAGGCACAGAGAGAAGAATTGGGGGAAATGTaGGGCTGGCTCCTTCTCCAGTCTGACAAGTGGGAG +
Preference number: 3 (lower is better)
Translates to: GLKAQREELGEM*GWLLLQSDKWE
Trigger: CTCCCACTTGTCAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCTTAAGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGTGCACTGATGACATTTaGTCTCCTTGGGAAGTATCT +
Preference number: 3 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQCTDDI*SPWEVS
Trigger: AGATACTTCCCAAGGAGACAAAATGTCATCAGTGCA...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp CCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATGCACTGATGACATTTaGTCTCCTTGGGAAGTATCT +
Preference number: 3 (lower is better)
Translates to: PSLSPAALLPSTAKPLEKCTDDI*SPWEVS
Trigger: AGATACTTCCCAAGGAGACAAAATGTCATCAGTGCA...TTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGGGCATTGGGGAGTATTaGGAATTAAACACAGGGACC +
Preference number: 3 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLGIGEY*ELNTGT
Trigger: GGTCCCTGTGTTTAATTCCAAATACTCCCCAATGCC...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGAGAGCACTGTCCCAGGTaGCTAAAGAGACAGGAGCAG +
Preference number: 3 (lower is better)
Translates to: HSWPISQLLYSVLSASGREHCPR*LKRQEQ
Trigger: CTGCTCCTGTCTCTTTAGCAACCTGGGACAGTGCTC...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp ATTAACTCACCAGCTCCTAGCCCCAGAATGCTGGGGTTAAAGGCATGCACCACCATTAAGAAACACTACTaGTCCCTGTACCTAGGTGGG +
Preference number: 3 (lower is better)
Translates to: INSPAPSPRMLGLKACTTIKKHY*SLYLGG
Trigger: CCCACCTAGGTACAGGGACAAGTAGTGTTTCTTAAT...GGTGGTGCATGCCTTTAACCCCAGCATTCTGGGGCTAGGAGCTGGTGAGTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR GCA 72 bp TACAGGGAATTGAACTCGGGTCCTCTGGAACAGCAATaGATGCTCGTAATTGCTGGGCCATTTCTTCAGCCA +
Preference number: 3 (lower is better)
Translates to: YRELNSGPLEQQ*MLVIAGPFLQP
Trigger: TGGCTGAAGAAATGGCCCAGCAATTACGAGCATGCATTGCTGTTCCAGAGGACCCGAGTTCAATTCCCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
3UTR CCA 72 bp GAGAGTAGAAAGGACTTAAGGCACAGAGAGAAGAATTaGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTG +
Preference number: 3 (lower is better)
Translates to: ESRKDLRHREKN*GKCEAGSFSSL
Trigger: CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCTTAAGTCCTTTCTACTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR TCA 72 bp ATTGGGGAGTATTTGGAATTAAACACAGGGACCAGATaGGAGGGATACTGGTGTACAAGCCACGGGGCAGAA +
Preference number: 3 (lower is better)
Translates to: IGEYLELNTGTR*EGYWCTSHGAE
Trigger: TTCTGCCCCGTGGCTTGTACACCAGTATCCCTCTCATCTGGTCCCTGTGTTTAATTCCAAATACTCCCCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp TGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGCACACGCACGAAAAATCCCGTGACTaGTTTCTCCAGGATCGACCC +
Preference number: 3 (lower is better)
Translates to: WGVCLTNSSLYIHSKHTHEKSRD*FLQDRP
Trigger: GGGTCGATCCTGGAGAAACAAGTCACGGGATTTTTC...GTGCGTGTGCTTGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp ACCTGGCCCAAGAATAGCACTTTTAATACAGGAAGAGACACCCAGCCTGTATACGAAAAATCCCGTGACTaGTTTCTCCAGGATCGACCC +
Preference number: 3 (lower is better)
Translates to: TWPKNSTFNTGRDTQPVYEKSRD*FLQDRP
Trigger: GGGTCGATCCTGGAGAAACAAGTCACGGGATTTTTC...GTATACAGGCTGGGTGTCTCTTCCTGTATTAAAAGTGCTATTCTTGGGCCAGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAGAAAAATCCCGTGACTaGTTTCTCCAGGATCGACCC +
Preference number: 3 (lower is better)
Translates to: CRRHGESVSLIHLCIYTAEKSRD*FLQDRP
Trigger: GGGTCGATCCTGGAGAAACAAGTCACGGGATTTTTC...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp TGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGCACACGCACGGCATTGGGGAGTATTaGGAATTAAACACAGGGACC +
Preference number: 3 (lower is better)
Translates to: WGVCLTNSSLYIHSKHTHGIGEY*ELNTGT
Trigger: GGTCCCTGTGTTTAATTCCAAATACTCCCCAATGCC...GTGCGTGTGCTTGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CCA 72 bp CCCTTTTCCCTCTGCACTGATGACATTTTGTCTCCTTaGGAAGTATCTCATGTCTGTAGGAGGGTTCCCTAT +
Preference number: 3 (lower is better)
Translates to: PFSLCTDDILSP*EVSHVCRRVPY
Trigger: ATAGGGAACCCTCCTACAGACATGAGATACTTCCCAAGGAGACAAAATGTCATCAGTGCAGAGGGAAAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CCA 72 bp CAGAATGCTGGGGTTAAAGGCATGCACCACCATACCTaGCCCAAGAATAGCACTTTTAATACAGGAAGAGAC +
Preference number: 3 (lower is better)
Translates to: QNAGVKGMHHHT*PKNSTFNTGRD
Trigger: GTCTCTTCCTGTATTAAAAGTGCTATTCTTGGGCCAGGTATGGTGGTGCATGCCTTTAACCCCAGCATTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR-3UTR CAA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGATGCACTGATGACATTTaGTCTCCTTGGGAAGTATCT +
Preference number: 3 (lower is better)
Translates to: HSWPISQLLYSVLSASGRCTDDI*SPWEVS
Trigger: AGATACTTCCCAAGGAGACAAAATGTCATCAGTGCA...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CCA 72 bp TCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTaGCACTTCAGCTTCCTTCTCTGTGGGTGTAGGCGT +
Preference number: 3 (lower is better)
Translates to: SMLKFVPVTLIS*HFSFLLCGCRR
Trigger: ACGCCTACACCCACAGAGAAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR GCA 72 bp CTCGGGTCCTCTGGAACAGCAATGCATGCTCGTAATTaGTGGGCCATTTCTTCAGCCATTTTATTTTCTTTT +
Preference number: 3 (lower is better)
Translates to: LGSSGTAMHARN*WAISSAILFSF
Trigger: AAAAGAAAATAAAATGGCTGAAGAAATGGCCCAGCAATTACGAGCATGCATTGCTGTTCCAGAGGACCCGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
3UTR CCA 72 bp CCATCTTCGCTACTCCAGACTAGGATCCATAGCAATTaGGAAATGGGCATTGGGGAGTATTTGGAATTAAAC +
Preference number: 3 (lower is better)
Translates to: PSSLLQTRIHSN*EMGIGEYLELN
Trigger: GTTTAATTCCAAATACTCCCCAATGCCCATTTCCCAATTGCTATGGATCCTAGTCTGGAGTAGCGAAGATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGCCCGGCGGTCAGTCTTaGCACGGGGAGGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: LSPSLSPAALLPSTAKPLPGGQS*HGEAAG
Trigger: TCCTGCTGCCTCCCCGTGCCAAGACTGACCGCCGGG...CAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTAGCGGGGCGAGGGCGTaGCCGGAGGCCAAGGCTGAA +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRSGARA*PEAKAE
Trigger: TTCAGCCTTGGCCTCCGGCCACGCCCTCGCCCCGCT...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGCGGCGCCATGTCGGTaGGTAACAGTGCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRAAPCR*VTVPAP
Trigger: CGGCGCCGGCACTGTTACCCACCGACATGGCGCCGC...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GGATTCCCTGGTCCTCAGGGGCGCAGTGTCCTGCATAGCTCATCCTTAAGAAGGGCGGCGCCATGTCGGTaGGTAACAGTGCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: GFPGPQGRSVLHSSSLRRAAPCR*VTVPAP
Trigger: CGGCGCCGGCACTGTTACCCACCGACATGGCGCCGC...CCTTCTTAAGGATGAGCTATGCAGGACACTGCGCCCCTGAGGACCAGGGAATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAACACGAAGCCTCTCCCGGCGGTCAGTCTTaGCACGGGGAGGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: HRPGVQELGAKQTEHEASPGGQS*HGEAAG
Trigger: TCCTGCTGCCTCCCCGTGCCAAGACTGACCGCCGGG...AGAGGCTTCGTGTTCTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TCCAGCATCGTCTCCAGGAAGGTCCCTGTCACTCTCAGGATTTCCTCAGTGTCCGCGGCGCCATGTCGGTaGGTAACAGTGCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: SSIVSRKVPVTLRISSVSAAPCR*VTVPAP
Trigger: CGGCGCCGGCACTGTTACCCACCGACATGGCGCCGC...GGACACTGAGGAAATCCTGAGAGTGACAGGGACCTTCCTGGAGACGATGCTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp CTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGCTGGAATCCATAGGTaGGCGCGTCGGCACTGTCTG +
Preference number: 4 (lower is better)
Translates to: LSPSLSPAALLPSTAKPLAGIHR*ARRHCL
Trigger: CAGACAGTGCCGACGCGCTCACCTATGGATTCCAGC...CAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTAGTCCCCAGGGATGGTaGCTCCGGAGGCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRSPQGW*LRRQWL
Trigger: CAGCCACTGCCTCCGGAGCCACCATCCCTGGGGACT...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GTCTGTAGGAGGGTTCCCTATCCCTGGGAAGAGCTCCACACCCCTAGGGATTCCCAGAGTCGGACGCACTaGCCAGCAGTGCTCAGTGGG +
Preference number: 4 (lower is better)
Translates to: VCRRVPYPWEELHTPRDSQSRTH*PAVLSG
Trigger: CCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTG...GGAATCCCTAGGGGTGTGGAGCTCTTCCCAGGGATAGGGAACCCTCCTACAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GGGAGTGGGGAGGAGGGGAGAAGGTGCGAGCACTGTCCCAGGTTGCTAAAGAGACGTATCGGCTCCGAATaGCCAGGACCACAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: GSGEEGRRCEHCPRLLKRRIGSE*PGPQVA
Trigger: TGCCACCTGTGGTCCTGGCCATTCGGAGCCGATACG...TCTCTTTAGCAACCTGGGACAGTGCTCGCACCTTCTCCCCTCCTCCCCACTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATGCGGCGCCATGTCGGTaGGTAACAGTGCCGGCGCCG +
Preference number: 4 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHAAPCR*VTVPAP
Trigger: CGGCGCCGGCACTGTTACCCACCGACATGGCGCCGC...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGGACAGTGGTCCCTCCTaGGCCCACAAGTCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQDSGPS*AHKSQL
Trigger: GAGCTGGGACTTGTGGGCCCAGGAGGGACCACTGTC...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAACACGAAGCCTCTGACAGTGGTCCCTCCTaGGCCCACAAGTCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: HRPGVQELGAKQTEHEASDSGPS*AHKSQL
Trigger: GAGCTGGGACTTGTGGGCCCAGGAGGGACCACTGTC...AGAGGCTTCGTGTTCTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp CTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGCTGGGCTGGGAATTGTaGCAAGGGGTGGAACAAGGG +
Preference number: 4 (lower is better)
Translates to: LSPSLSPAALLPSTAKPLLGWEL*QGVEQG
Trigger: CCCTTGTTCCACCCCTTGTCACAATTCCCAGCCCAG...CAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp CACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAACACGAAGCCTCTGGAAAGGGTTTGCTCTaGGGGACGGCCAGGAACCAG +
Preference number: 4 (lower is better)
Translates to: HRPGVQELGAKQTEHEASGKGLL*GTARNQ
Trigger: CTGGTTCCTGGCCGTCCCTCAGAGCAAACCCTTTCC...AGAGGCTTCGTGTTCTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR GCA 90 bp GTCTGTAGGAGGGTTCCCTATCCCTGGGAAGAGCTCCACACCCCTAGGGATTCCCGCACTGGCCAGCAGTaGTCAGTGGGTGCTATGGCT +
Preference number: 4 (lower is better)
Translates to: VCRRVPYPWEELHTPRDSRTGQQ*SVGAMA
Trigger: AGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCG...GGAATCCCTAGGGGTGTGGAGCTCTTCCCAGGGATAGGGAACCCTCCTACAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGCGCACTGGCCAGCAGTaGTCAGTGGGTGCTATGGCT +
Preference number: 4 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQRTGQQ*SVGAMA
Trigger: AGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCG...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGGGTGCGCAGCAGTTTaGACTGGCCATAGGGCCCAC +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRGCAAV*TGHRAH
Trigger: GTGGGCCCTATGGCCAGTGCAAACTGCTGCGCACCC...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGCCCGCCACCCAGCCTTaGACTCGCAGGCCGCGTACA +
Preference number: 4 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLPATQP*TRRPRT
Trigger: TGTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGG...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GGGAGTGGGGAGGAGGGGAGAAGGTGCGAGCACTGTCCCAGGTTGCTAAAGAGAAGCAAACGCGGGGAATaGGACAGGGTCAGATGCTGG +
Preference number: 4 (lower is better)
Translates to: GSGEEGRRCEHCPRLLKRSKRGE*DRVRCW
Trigger: CCAGCATCTGACCCTGTCCCATTCCCCGCGTTTGCT...TCTCTTTAGCAACCTGGGACAGTGCTCGCACCTTCTCCCCTCCTCCCCACTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp CTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGTGGGTGCCTAGTGACTaGGGCATGTTCATGGCAGCC +
Preference number: 4 (lower is better)
Translates to: LSPSLSPAALLPSTAKPLWVPSD*GMFMAA
Trigger: GGCTGCCATGAACATGCCCCAGTCACTAGGCACCCA...CAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp GGGGCTAAGCAGACAGAACACGAAGCCTCTCAGCATTTAGCAGCCTGTCTGACTAGCTGGGCGCTCAGGTaGAAGGGCCACGCTGGGACC +
Preference number: 4 (lower is better)
Translates to: GAKQTEHEASQHLAACLTSWALR*KGHAGT
Trigger: GGTCCCAGCGTGGCCCTTCCACCTGAGCGCCCAGCT...AGTCAGACAGGCTGCTAAATGCTGAGAGGCTTCGTGTTCTGTCTGCTTAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATAGCTGGGCGCTCAGGTaGAAGGGCCACGCTGGGACC +
Preference number: 4 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHSWALR*KGHAGT
Trigger: GGTCCCAGCGTGGCCCTTCCACCTGAGCGCCCAGCT...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGATGGGATTCGAAGCCTaGCCACTCTGGAGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: LSPSLSPAALLPSTAKPLMGFEA*PLWRWH
Trigger: GTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCAT...CAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATCCCGGCGGTCAGTCTTaGCACGGGGAGGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHPGGQS*HGEAAG
Trigger: TCCTGCTGCCTCCCCGTGCCAAGACTGACCGCCGGG...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp TCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGCCAGCTGAGGGTCAGTaGGAAAACCCCAGGCACAGC +
Preference number: 4 (lower is better)
Translates to: SLLQPFCPALLSHWKNPVPAEGQ*ENPRHS
Trigger: GCTGTGCCTGGGGTTTTCTCACTGACCCTCAGCTGG...CACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp CCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAAGCTGGAATCCATAGGTaGGCGCGTCGGCACTGTCTG +
Preference number: 4 (lower is better)
Translates to: PSLSPAALLPSTAKPLEKAGIHR*ARRHCL
Trigger: CAGACAGTGCCGACGCGCTCACCTATGGATTCCAGC...TTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp GGATTCCCTGGTCCTCAGGGGCGCAGTGTCCTGCATAGCTCATCCTTAAGAAGGCGCACTGGCCAGCAGTaGTCAGTGGGTGCTATGGCT +
Preference number: 4 (lower is better)
Translates to: GFPGPQGRSVLHSSSLRRRTGQQ*SVGAMA
Trigger: AGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCG...CCTTCTTAAGGATGAGCTATGCAGGACACTGCGCCCCTGAGGACCAGGGAATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAACGCACTGGCCAGCAGTaGTCAGTGGGTGCTATGGCT +
Preference number: 4 (lower is better)
Translates to: PSLSPAALLPSTAKPLEKRTGQQ*SVGAMA
Trigger: AGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCG...TTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCCGCCACCCAGCCTTaGACTCGCAGGCCGCGTACA +
Preference number: 4 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRPATQP*TRRPRT
Trigger: TGTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGG...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTCACAGCCGTGTCTGCTaGGAAGTGTGTGTGCAGCGG +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRHSRVC*EVCVQR
Trigger: CCGCTGCACACACACTTCCCAGCAGACACGGCTGTG...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATTCCGGAGGCAGTGGCTaGGTGCCTAGTGACTGGGGC +
Preference number: 4 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHSGGSG*VPSDWG
Trigger: GCCCCAGTCACTAGGCACCCAGCCACTGCCTCCGGA...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGAGTCCCCAGGGATGGTaGCTCCGGAGGCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLSPQGW*LRRQWL
Trigger: CAGCCACTGCCTCCGGAGCCACCATCCCTGGGGACT...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAACACGAAGCCTCTATGGGATTCGAAGCCTaGCCACTCTGGAGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: HRPGVQELGAKQTEHEASMGFEA*PLWRWH
Trigger: GTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCAT...AGAGGCTTCGTGTTCTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAACGTATCGGCTCCGAATaGCCAGGACCACAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: PSLSPAALLPSTAKPLEKRIGSE*PGPQVA
Trigger: TGCCACCTGTGGTCCTGGCCATTCGGAGCCGATACG...TTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CCCGTGACTTGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTCCCGGCGGTCAGTCTTaGCACGGGGAGGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: PVTCFSRIDPFSLCTDDIPGGQS*HGEAAG
Trigger: TCCTGCTGCCTCCCCGTGCCAAGACTGACCGCCGGG...AATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACAAGTCACGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp GGGAGTGGGGAGGAGGGGAGAAGGTGCGAGCACTGTCCCAGGTTGCTAAAGAGACTCAAGGGCACCTCATaGGTCAGGCATCCGAATACT +
Preference number: 4 (lower is better)
Translates to: GSGEEGRRCEHCPRLLKRLKGTS*VRHPNT
Trigger: AGTATTCGGATGCCTGACTCATGAGGTGCCCTTGAG...TCTCTTTAGCAACCTGGGACAGTGCTCGCACCTTCTCCCCTCCTCCCCACTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp CTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGCTCAAGGGCACCTCATaGGTCAGGCATCCGAATACT +
Preference number: 4 (lower is better)
Translates to: LSPSLSPAALLPSTAKPLLKGTS*VRHPNT
Trigger: AGTATTCGGATGCCTGACTCATGAGGTGCCCTTGAG...CAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp CTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGCAGGTGGCAAAAACATaGGGTTGCTCAGGCAGAGGA +
Preference number: 4 (lower is better)
Translates to: LSPSLSPAALLPSTAKPLQVAKT*GCSGRG
Trigger: TCCTCTGCCTGAGCAACCTCATGTTTTTGCCACCTG...CAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp ATTAACTCACCAGCTCCTAGCCCCAGAATGCTGGGGTTAAAGGCATGCACCACCGGGTGCGCAGCAGTTTaGACTGGCCATAGGGCCCAC +
Preference number: 4 (lower is better)
Translates to: INSPAPSPRMLGLKACTTGCAAV*TGHRAH
Trigger: GTGGGCCCTATGGCCAGTGCAAACTGCTGCGCACCC...GGTGGTGCATGCCTTTAACCCCAGCATTCTGGGGCTAGGAGCTGGTGAGTTAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGACCCGCCACCCAGCCTTaGACTCGCAGGCCGCGTACA +
Preference number: 4 (lower is better)
Translates to: PHSWPISQLLYSVLSASGPATQP*TRRPRT
Trigger: TGTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGG...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAACCATGCCGGTCAAGCTaGAGAGCCATAGACAGCAGC +
Preference number: 4 (lower is better)
Translates to: PSLSPAALLPSTAKPLEKPCRSS*RAIDSS
Trigger: GCTGCTGTCTATGGCTCTGCAGCTTGACCGGCATGG...TTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp GTCTGTAGGAGGGTTCCCTATCCCTGGGAAGAGCTCCACACCCCTAGGGATTCCAGATTCCAGAGTCCATaGCGGTCAAGCTGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: VCRRVPYPWEELHTPRDSRFQSP*RSSCRA
Trigger: GGCTCTGCAGCTTGACCGGCATGGACTCTGGAATCT...GGAATCCCTAGGGGTGTGGAGCTCTTCCCAGGGATAGGGAACCCTCCTACAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAGGCACGGGACAGGCTaGGTTGTGGACACTCTTGTA +
Preference number: 4 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQRHGTG*VVDTLV
Trigger: TACAAGAGTGTCCACAACCCAGCCTGTCCCGTGCCT...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp CCCGTGACTTGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTAGTCCCCAGGGATGGTaGCTCCGGAGGCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: PVTCFSRIDPFSLCTDDISPQGW*LRRQWL
Trigger: CAGCCACTGCCTCCGGAGCCACCATCCCTGGGGACT...AATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACAAGTCACGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGAAGGAGTCCCCAGGGATaGTGGCTCCGGAGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRRSPQG*WLRRQW
Trigger: CCACTGCCTCCGGAGCCACCATCCCTGGGGACTCCT...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGAGCTCGCATTGAGCTaGAGCTCCAGGCTAAGGACG +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRELALS*SSRLRT
Trigger: CGTCCTTAGCCTGGAGCTCCAGCTCAATGCGAGCTC...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp CCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAAGATACAGCACCTGCTTaGTCACAGGCTGCAGACGAG +
Preference number: 4 (lower is better)
Translates to: PSLSPAALLPSTAKPLEKDTAPA*SQAADE
Trigger: CTCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATC...TTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGCCACACTGCCAGCAATaGGCATGTGCCAAATGCTGT +
Preference number: 4 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQPHCQQ*ACAKCC
Trigger: ACAGCATTTGGCACATGCTCATTGCTGGCAGTGTGG...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGCTCCTCCTGTTCATTaGTGCACAGCTGGTAACCGC +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRAPPVH*CTAGNR
Trigger: GCGGTTACCAGCTGTGCATCAATGAACAGGAGGAGC...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp GGATTCCCTGGTCCTCAGGGGCGCAGTGTCCTGCATAGCTCATCCTTAAGAAGGGCTCCTCCTGTTCATTaGTGCACAGCTGGTAACCGC +
Preference number: 4 (lower is better)
Translates to: GFPGPQGRSVLHSSSLRRAPPVH*CTAGNR
Trigger: GCGGTTACCAGCTGTGCATCAATGAACAGGAGGAGC...CCTTCTTAAGGATGAGCTATGCAGGACACTGCGCCCCTGAGGACCAGGGAATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGGAGGCAGTGGCTGGGTaGCTAGTGACTGGGGCATGT +
Preference number: 4 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLEAVAG*LVTGAC
Trigger: ACATGCCCCAGTCACTAGGCACCCAGCCACTGCCTC...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGTGCTTGATCACAGGCTaGAGACGAGCCATGGCTATG +
Preference number: 4 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQCLITG*RRAMAM
Trigger: CATAGCCATGGCTCGTCTGCAGCCTGTGATCAAGCA...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGCCAGTGGAAGAGACTTaGGCAAACATAGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: LSPSLSPAALLPSTAKPLPVEET*ANIEMG
Trigger: CCCCATCTCTATGTTTGCCCAAGTCTCTTCCACTGG...CAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGGAGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp GTCTGTAGGAGGGTTCCCTATCCCTGGGAAGAGCTCCACACCCCTAGGGATTCCGTGTCCTCAGGAACGTaGAAGTGGAAGAGCTCCGTA +
Preference number: 4 (lower is better)
Translates to: VCRRVPYPWEELHTPRDSVSSGT*KWKSSV
Trigger: TACGGAGCTCTTCCACTTCCACGTTCCTGAGGACAC...GGAATCCCTAGGGGTGTGGAGCTCTTCCCAGGGATAGGGAACCCTCCTACAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATACTGGGGCATGTTCATaGCAGCCCCAGGGACCAAGG +
Preference number: 4 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHTGACS*QPQGPR
Trigger: CCTTGGTCCCTGGGGCTGCCATGAACATGCCCCAGT...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGGAGTCCCCAGGGATaGTGGCTCCGGAGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: PHSWPISQLLYSVLSASGRSPQG*WLRRQW
Trigger: CCACTGCCTCCGGAGCCACCATCCCTGGGGACTCCT...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGAAGCTGGGCGCTCAGGTaGAAGGGCCACGCTGGGACC +
Preference number: 4 (lower is better)
Translates to: HSWPISQLLYSVLSASGRSWALR*KGHAGT
Trigger: GGTCCCAGCGTGGCCCTTCCACCTGAGCGCCCAGCT...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TCCAGCATCGTCTCCAGGAAGGTCCCTGTCACTCTCAGGATTTCCTCAGTGTCCCCAGGTCCCCGTCTGTaGGAATGGGATTCGAAGCCT +
Preference number: 4 (lower is better)
Translates to: SSIVSRKVPVTLRISSVSPGPRL*EWDSKP
Trigger: AGGCTTCGAATCCCATTCCCACAGACGGGGACCTGG...GGACACTGAGGAAATCCTGAGAGTGACAGGGACCTTCCTGGAGACGATGCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGGCAGAGGAGGAGTGTaGACAGCAGCTGGAATCCAT +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRGRGGV*TAAGIH
Trigger: ATGGATTCCAGCTGCTGTCCACACTCCTCCTCTGCC...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGGGCCAGGACCACAGGTaGCAAAAACATGAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQGQDHR*QKHEVA
Trigger: AGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCC...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CCCGTGACTTGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTGACAGTGGTCCCTCCTaGGCCCACAAGTCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: PVTCFSRIDPFSLCTDDIDSGPS*AHKSQL
Trigger: GAGCTGGGACTTGTGGGCCCAGGAGGGACCACTGTC...AATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACAAGTCACGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGGGGTGTGATGGAGATTaGAGCAAGGGCTGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLGCDGD*SKGCGW
Trigger: CCAGCCACAGCCCTTGCTTCAATCTCCATCACACCC...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTTGGAAGGAGTGGGTGTaGTGGAGATTGAAGCAAGGG +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRWKEWV*WRLKQG
Trigger: CCCTTGCTTCAATCTCCATCACACCCACTCCTTCCA...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGTGGGCAGTGTCCAGCTaGGGGTCAGTGAGAAAACCC +
Preference number: 4 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLWAVSS*GSVRKP
Trigger: GGGTTTTCTCACTGACCCTCAGCTGGACACTGCCCA...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp GGATTCCCTGGTCCTCAGGGGCGCAGTGTCCTGCATAGCTCATCCTTAAGAAGGCTCAAGGGCACCTCATaGGTCAGGCATCCGAATACT +
Preference number: 4 (lower is better)
Translates to: GFPGPQGRSVLHSSSLRRLKGTS*VRHPNT
Trigger: AGTATTCGGATGCCTGACTCATGAGGTGCCCTTGAG...CCTTCTTAAGGATGAGCTATGCAGGACACTGCGCCCCTGAGGACCAGGGAATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGAGCTGGAATCCATAGGTaGGCGCGTCGGCACTGTCTG +
Preference number: 4 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRAGIHR*ARRHCL
Trigger: CAGACAGTGCCGACGCGCTCACCTATGGATTCCAGC...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAACACGAAGCCTCTCCAAAGGTTCCTCCCTaGTCCTTGAAGATGATGAGG +
Preference number: 4 (lower is better)
Translates to: HRPGVQELGAKQTEHEASPKVPP*SLKMMR
Trigger: CCTCATCATCTTCAAGGAGCAGGGAGGAACCTTTGG...AGAGGCTTCGTGTTCTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR GCA 90 bp TCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGCGAGAGAAGGAAGCCTaGCAGGGACTCTTTGGAACA +
Preference number: 4 (lower is better)
Translates to: SLLQPFCPALLSHWKNPVREKEA*QGLFGT
Trigger: TGTTCCAAAGAGTCCCTGGCAGGCTTCCTTCTCTCG...CACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGTGCTTGATCACAGGCTaGAGACGAGCCATGGCTATG +
Preference number: 4 (lower is better)
Translates to: SLLQPFCPALLSHWKNPVCLITG*RRAMAM
Trigger: CATAGCCATGGCTCGTCTGCAGCCTGTGATCAAGCA...CACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATGCTTGATCACAGGCTaGAGACGAGCCATGGCTATG +
Preference number: 4 (lower is better)
Translates to: PSLSPAALLPSTAKPLEKCLITG*RRAMAM
Trigger: CATAGCCATGGCTCGTCTGCAGCCTGTGATCAAGCA...TTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp ACCTGGCCCAAGAATAGCACTTTTAATACAGGAAGAGACACCCAGCCTGTATACAGCTGGGCGCTCAGGTaGAAGGGCCACGCTGGGACC +
Preference number: 4 (lower is better)
Translates to: TWPKNSTFNTGRDTQPVYSWALR*KGHAGT
Trigger: GGTCCCAGCGTGGCCCTTCCACCTGAGCGCCCAGCT...GTATACAGGCTGGGTGTCTCTTCCTGTATTAAAAGTGCTATTCTTGGGCCAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GGGGCTAAGCAGACAGAACACGAAGCCTCTCAGCATTTAGCAGCCTGTCTGACTGAGCTCGCATTGAGCTaGAGCTCCAGGCTAAGGACG +
Preference number: 4 (lower is better)
Translates to: GAKQTEHEASQHLAACLTELALS*SSRLRT
Trigger: CGTCCTTAGCCTGGAGCTCCAGCTCAATGCGAGCTC...AGTCAGACAGGCTGCTAAATGCTGAGAGGCTTCGTGTTCTGTCTGCTTAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATATGGGATTCGAAGCCTaGCCACTCTGGAGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHMGFEA*PLWRWH
Trigger: GTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCAT...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GGGGCTAAGCAGACAGAACACGAAGCCTCTCAGCATTTAGCAGCCTGTCTGACTATGGGATTCGAAGCCTaGCCACTCTGGAGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: GAKQTEHEASQHLAACLTMGFEA*PLWRWH
Trigger: GTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCAT...AGTCAGACAGGCTGCTAAATGCTGAGAGGCTTCGTGTTCTGTCTGCTTAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGCCAGGTCCCCGTCTGTaGGAATGGGATTCGAAGCCT +
Preference number: 4 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLPGPRL*EWDSKP
Trigger: AGGCTTCGAATCCCATTCCCACAGACGGGGACCTGG...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGGCCAGGACCACAGGTaGCAAAAACATGAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRGQDHR*QKHEVA
Trigger: AGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCC...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp GGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCTCATCCTGGAGACCCTTaGCAGAGATGTGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: GFMLCLGSHSRTSMWHRPHPGDP*QRCGHG
Trigger: CCCATGGCCACATCTCTGTCAAGGGTCTCCAGGATG...AGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAGCTGGAATCCATAGGTaGGCGCGTCGGCACTGTCTG +
Preference number: 4 (lower is better)
Translates to: PHSWPISQLLYSVLSASGAGIHR*ARRHCL
Trigger: CAGACAGTGCCGACGCGCTCACCTATGGATTCCAGC...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp GGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCTAGGCACAGCCGTGTCTaGTGGGAAGTGTGTGTGCAG +
Preference number: 4 (lower is better)
Translates to: GFMLCLGSHSRTSMWHRPRHSRV*WEVCVQ
Trigger: CTGCACACACACTTCCCAGCAGACACGGCTGTGCCT...AGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR GCA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGAGGGTGCGCAGCAGTTTaGACTGGCCATAGGGCCCAC +
Preference number: 4 (lower is better)
Translates to: HSWPISQLLYSVLSASGRGCAAV*TGHRAH
Trigger: GTGGGCCCTATGGCCAGTGCAAACTGCTGCGCACCC...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp ATTAACTCACCAGCTCCTAGCCCCAGAATGCTGGGGTTAAAGGCATGCACCACCACAGGTAGTTGTGGGTaGGCAGCAGTTTGCACTGGC +
Preference number: 4 (lower is better)
Translates to: INSPAPSPRMLGLKACTTTGSCG*AAVCTG
Trigger: GCCAGTGCAAACTGCTGCGCACCCACAACTACCTGT...GGTGGTGCATGCCTTTAACCCCAGCATTCTGGGGCTAGGAGCTGGTGAGTTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCATGCCGGTCAAGCTaGAGAGCCATAGACAGCAGC +
Preference number: 4 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRPCRSS*RAIDSS
Trigger: GCTGCTGTCTATGGCTCTGCAGCTTGACCGGCATGG...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TCCAGCATCGTCTCCAGGAAGGTCCCTGTCACTCTCAGGATTTCCTCAGTGTCCTGCCAGCAATCAGGCTaGCGGGACACAGGTAGAAAA +
Preference number: 4 (lower is better)
Translates to: SSIVSRKVPVTLRISSVSCQQSG*RDTGRK
Trigger: TTTTCTACCTGTGTCCCGGCAGCCTGATTGCTGGCA...GGACACTGAGGAAATCCTGAGAGTGACAGGGACCTTCCTGGAGACGATGCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp ATTAACTCACCAGCTCCTAGCCCCAGAATGCTGGGGTTAAAGGCATGCACCACCAGTCACGCTTTGGTCTaGGCAGTGGTCCCCAAAGGT +
Preference number: 4 (lower is better)
Translates to: INSPAPSPRMLGLKACTTSHALV*AVVPKG
Trigger: ACCTTTGGGGACCACTGCCCAGACCAAAGCGTGACT...GGTGGTGCATGCCTTTAACCCCAGCATTCTGGGGCTAGGAGCTGGTGAGTTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp GGGAGTGGGGAGGAGGGGAGAAGGTGCGAGCACTGTCCCAGGTTGCTAAAGAGAAAGGCTGAACGATTATaGGAGGAAAGGGTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: GSGEEGRRCEHCPRLLKRKAERL*EERVCS
Trigger: AGAGCAAACCCTTTCCTCCCATAATCGTTCAGCCTT...TCTCTTTAGCAACCTGGGACAGTGCTCGCACCTTCTCCCCTCCTCCCCACTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp ATTAACTCACCAGCTCCTAGCCCCAGAATGCTGGGGTTAAAGGCATGCACCACCAAGGCCAACTCCAGCTaGCATACTGAGGCACCTCCA +
Preference number: 4 (lower is better)
Translates to: INSPAPSPRMLGLKACTTKANSS*HTEAPP
Trigger: TGGAGGTGCCTCAGTATGCCAGCTGGAGTTGGCCTT...GGTGGTGCATGCCTTTAACCCCAGCATTCTGGGGCTAGGAGCTGGTGAGTTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCAGGTCCCCGTCTGTaGGAATGGGATTCGAAGCCT +
Preference number: 4 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRPGPRL*EWDSKP
Trigger: AGGCTTCGAATCCCATTCCCACAGACGGGGACCTGG...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp ATTAACTCACCAGCTCCTAGCCCCAGAATGCTGGGGTTAAAGGCATGCACCACCGGCAGAGGAGGAGTGTaGACAGCAGCTGGAATCCAT +
Preference number: 4 (lower is better)
Translates to: INSPAPSPRMLGLKACTTGRGGV*TAAGIH
Trigger: ATGGATTCCAGCTGCTGTCCACACTCCTCCTCTGCC...GGTGGTGCATGCCTTTAACCCCAGCATTCTGGGGCTAGGAGCTGGTGAGTTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GGGGCTAAGCAGACAGAACACGAAGCCTCTCAGCATTTAGCAGCCTGTCTGACTGAACTGTCCAAGCTGTaGCCAAGATCCCGAGGGCAA +
Preference number: 4 (lower is better)
Translates to: GAKQTEHEASQHLAACLTELSKL*PRSRGQ
Trigger: TTGCCCTCGGGATCTTGGCCACAGCTTGGACAGTTC...AGTCAGACAGGCTGCTAAATGCTGAGAGGCTTCGTGTTCTGTCTGCTTAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp GGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCTACACACCAGCTGGGCTaGAACCCTGTAGGTGAAGCT +
Preference number: 4 (lower is better)
Translates to: GFMLCLGSHSRTSMWHRPTHQLG*NPVGEA
Trigger: AGCTTCACCTACAGGGTTTCAGCCCAGCTGGTGTGT...AGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp ACCTGGCCCAAGAATAGCACTTTTAATACAGGAAGAGACACCCAGCCTGTATACCTCCAGCTGGCATACTaGGGCACCTCCACAGGCCAC +
Preference number: 4 (lower is better)
Translates to: TWPKNSTFNTGRDTQPVYLQLAY*GTSTGH
Trigger: GTGGCCTGTGGAGGTGCCTCAGTATGCCAGCTGGAG...GTATACAGGCTGGGTGTCTCTTCCTGTATTAAAAGTGCTATTCTTGGGCCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp ATTAACTCACCAGCTCCTAGCCCCAGAATGCTGGGGTTAAAGGCATGCACCACCCTCAAGGGCACCTCATaGGTCAGGCATCCGAATACT +
Preference number: 4 (lower is better)
Translates to: INSPAPSPRMLGLKACTTLKGTS*VRHPNT
Trigger: AGTATTCGGATGCCTGACTCATGAGGTGCCCTTGAG...GGTGGTGCATGCCTTTAACCCCAGCATTCTGGGGCTAGGAGCTGGTGAGTTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATCCACACTGCCAGCAATaGGCATGTGCCAAATGCTGT +
Preference number: 4 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHPHCQQ*ACAKCC
Trigger: ACAGCATTTGGCACATGCTCATTGCTGGCAGTGTGG...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGCGAGAGAAGGAAGCCTaGCAGGGACTCTTTGGAACA +
Preference number: 4 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLREKEA*QGLFGT
Trigger: TGTTCCAAAGAGTCCCTGGCAGGCTTCCTTCTCTCG...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp GGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCTACAGGTAGTTGTGGGTaGGCAGCAGTTTGCACTGGC +
Preference number: 4 (lower is better)
Translates to: GFMLCLGSHSRTSMWHRPTGSCG*AAVCTG
Trigger: GCCAGTGCAAACTGCTGCGCACCCACAACTACCTGT...AGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAACAGTCATCCCCGCCACCCAGCCTTaGACTCGCAGGCCGCGTACA +
Preference number: 4 (lower is better)
Translates to: LRNSPCLRKASCSLKTVIPATQP*TRRPRT
Trigger: TGTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGG...GATGACTGTTTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGATACACAGTCACGCTTTaGTCTGGGCAGTGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRYTVTL*SGQWSP
Trigger: TGGGGACCACTGCCCAGACCAAAGCGTGACTGTGTA...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAACAGAGATGTGGCCATaGGCTTGGGGAAGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: PHSWPISQLLYSVLSASGTEMWP*AWGRWA
Trigger: TGCCCACCTTCCCCAAGCCCATGGCCACATCTCTGT...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGAAACCGCACACAGAGCTaGAAGCTGATGGTCCTGCCA +
Preference number: 4 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRNRTQS*KLMVLP
Trigger: TGGCAGGACCATCAGCTTCCAGCTCTGTGTGCGGTT...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp TCCAGCATCGTCTCCAGGAAGGTCCCTGTCACTCTCAGGATTTCCTCAGTGTCCACAGTCATCCACACATaGGGACAAGAAGGTACGCAG +
Preference number: 4 (lower is better)
Translates to: SSIVSRKVPVTLRISSVSTVIHT*GQEGTQ
Trigger: CTGCGTACCTTCTTGTCCCCATGTGTGGATGACTGT...GGACACTGAGGAAATCCTGAGAGTGACAGGGACCTTCCTGGAGACGATGCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCTGAACTGTCCAAGCTGTaGCCAAGATCCCGAGGGCAA +
Preference number: 4 (lower is better)
Translates to: GFMLCLGSHSRTSMWHRPELSKL*PRSRGQ
Trigger: TTGCCCTCGGGATCTTGGCCACAGCTTGGACAGTTC...AGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp GAGAAAGACTGTGTCATTAAGAAACACTACTTGTCCCTGTACCTAGGTGGGCTCCAGGGGACAGACAGATaGCCCTCGACCCCCTACACA +
Preference number: 4 (lower is better)
Translates to: EKDCVIKKHYLSLYLGGLQGTDR*PSTPYT
Trigger: TGTGTAGGGGGTCGAGGGGCATCTGTCTGTCCCCTG...GAGCCCACCTAGGTACAGGGACAAGTAGTGTTTCTTAATGACACAGTCTTTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp TCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGCCTGTAGGTGAAGCTTaGCACAAAGACCTTGTACAA +
Preference number: 4 (lower is better)
Translates to: SLLQPFCPALLSHWKNPVPVGEA*HKDLVQ
Trigger: TTGTACAAGGTCTTTGTGCCAAGCTTCACCTACAGG...CACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp AGGACCCAGAGGAACATGAGATCTGAGCCAGAACAAACTATATACATAGTGAGATCCGGAGGCAGTGGCTaGGTGCCTAGTGACTGGGGC +
Preference number: 4 (lower is better)
Translates to: RTQRNMRSEPEQTIYIVRSGGSG*VPSDWG
Trigger: GCCCCAGTCACTAGGCACCCAGCCACTGCCTCCGGA...TCTCACTATGTATATAGTTTGTTCTGGCTCAGATCTCATGTTCCTCTGGGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp AGGACCCAGAGGAACATGAGATCTGAGCCAGAACAAACTATATACATAGTGAGAAGTCCCCAGGGATGGTaGCTCCGGAGGCAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: RTQRNMRSEPEQTIYIVRSPQGW*LRRQWL
Trigger: CAGCCACTGCCTCCGGAGCCACCATCCCTGGGGACT...TCTCACTATGTATATAGTTTGTTCTGGCTCAGATCTCATGTTCCTCTGGGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GCCAGAACAAACTATATACATAGTGAGAGCCTCTCTCTCTTTCCTCCTTTCTCTAGGAGTCCCCAGGGATaGTGGCTCCGGAGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: ARTNYIHSESLSLFPPFSRSPQG*WLRRQW
Trigger: CCACTGCCTCCGGAGCCACCATCCCTGGGGACTCCT...AGAGAAAGGAGGAAAGAGAGAGAGGCTCTCACTATGTATATAGTTTGTTCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TCTAGGCTCTTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAACAGAGTCGGACGCACTaGCCAGCAGTGCTCAGTGGG +
Preference number: 4 (lower is better)
Translates to: SRLLRNSPCLRKASCSLKQSRTH*PAVLSG
Trigger: CCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTG...TTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAAGAGCCTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GAGAAAGACTGTGTCATTAAGAAACACTACTTGTCCCTGTACCTAGGTGGGCTCCGTATCGGCTCCGAATaGCCAGGACCACAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: EKDCVIKKHYLSLYLGGLRIGSE*PGPQVA
Trigger: TGCCACCTGTGGTCCTGGCCATTCGGAGCCGATACG...GAGCCCACCTAGGTACAGGGACAAGTAGTGTTTCTTAATGACACAGTCTTTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TCTAGGCTCTTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAGACAGTGGTCCCTCCTaGGCCCACAAGTCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: SRLLRNSPCLRKASCSLKDSGPS*AHKSQL
Trigger: GAGCTGGGACTTGTGGGCCCAGGAGGGACCACTGTC...TTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAAGAGCCTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGAGATACAGCACCTGCTTaGTCACAGGCTGCAGACGAG +
Preference number: 4 (lower is better)
Translates to: HSWPISQLLYSVLSASGRDTAPA*SQAADE
Trigger: CTCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATC...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGAGCTGGGAAGTGTGTGTaGAGCGGATTGATGACGGGA +
Preference number: 4 (lower is better)
Translates to: HSWPISQLLYSVLSASGRAGKCV*SGLMTG
Trigger: TCCCGTCATCAATCCGCTGCACACACACTTCCCAGC...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR GCA 90 bp TCCTGCTCCCTGAAAACAGTCATCCTTGAGAAAGACTGTGTCATTAAGAAACACGGGTGCGCAGCAGTTTaGACTGGCCATAGGGCCCAC +
Preference number: 4 (lower is better)
Translates to: SCSLKTVILEKDCVIKKHGCAAV*TGHRAH
Trigger: GTGGGCCCTATGGCCAGTGCAAACTGCTGCGCACCC...GTGTTTCTTAATGACACAGTCTTTCTCAAGGATGACTGTTTTCAGGGAGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGATGCTTGATCACAGGCTaGAGACGAGCCATGGCTATG +
Preference number: 4 (lower is better)
Translates to: PHSWPISQLLYSVLSASGCLITG*RRAMAM
Trigger: CATAGCCATGGCTCGTCTGCAGCCTGTGATCAAGCA...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TCTAGGCTCTTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAATGTGGCCATGGGCTTaGGGAAGGTGGGCAGCCAAG +
Preference number: 4 (lower is better)
Translates to: SRLLRNSPCLRKASCSLKMWPWA*GRWAAK
Trigger: CTTGGCTGCCCACCTTCCCCAAGCCCATGGCCACAT...TTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAAGAGCCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp TCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTGGCACTTCAGCTTCCTTTCCGGAGGCAGTGGCTaGGTGCCTAGTGACTGGGGC +
Preference number: 4 (lower is better)
Translates to: SMLKFVPVTLISWHFSFLSGGSG*VPSDWG
Trigger: GCCCCAGTCACTAGGCACCCAGCCACTGCCTCCGGA...AAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GCCAGAACAAACTATATACATAGTGAGAGCCTCTCTCTCTTTCCTCCTTTCTCTCAGAGTCGGACGCACTaGCCAGCAGTGCTCAGTGGG +
Preference number: 4 (lower is better)
Translates to: ARTNYIHSESLSLFPPFSQSRTH*PAVLSG
Trigger: CCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTG...AGAGAAAGGAGGAAAGAGAGAGAGGCTCTCACTATGTATATAGTTTGTTCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGAGAACTGTCCAAGCTGTaGCCAAGATCCCGAGGGCAA +
Preference number: 4 (lower is better)
Translates to: HSWPISQLLYSVLSASGRELSKL*PRSRGQ
Trigger: TTGCCCTCGGGATCTTGGCCACAGCTTGGACAGTTC...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGCACACGCACACAGGTAGTTGTGGGTaGGCAGCAGTTTGCACTGGC +
Preference number: 4 (lower is better)
Translates to: WGVCLTNSSLYIHSKHTHTGSCG*AAVCTG
Trigger: GCCAGTGCAAACTGCTGCGCACCCACAACTACCTGT...GTGCGTGTGCTTGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CCCGTGACTTGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTTACAGAAAACCACAATaGCTGGCTGGTCACAGGCAT +
Preference number: 4 (lower is better)
Translates to: PVTCFSRIDPFSLCTDDIYRKPQ*LAGHRH
Trigger: ATGCCTGTGACCAGCCAGGCATTGTGGTTTTCTGTA...AATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACAAGTCACGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTGGCACTTCAGCTTCCTTAGGGCTGGTGGCAGCTaGAGCCCAGACCTGAGTCGA +
Preference number: 4 (lower is better)
Translates to: SMLKFVPVTLISWHFSFLRAGGS*SPDLSR
Trigger: TCGACTCAGGTCTGGGCTCCAGCTGCCACCAGCCCT...AAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp ACCTGGCCCAAGAATAGCACTTTTAATACAGGAAGAGACACCCAGCCTGTATACTGCGGGGCGAGCAGGTaGAGTAATCAGTCAGGAACA +
Preference number: 4 (lower is better)
Translates to: TWPKNSTFNTGRDTQPVYCGASR*SNQSGT
Trigger: TGTTCCTGACTGATTACTCCACCTGCTCGCCCCGCA...GTATACAGGCTGGGTGTCTCTTCCTGTATTAAAAGTGCTATTCTTGGGCCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
3UTR CAA 72 bp ATCCTTGAGAAAGACTGTGTCATTAAGAAACACTACTaGTCCCTGTACCTAGGTGGGCTCCACAGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: ILEKDCVIKKHY*SLYLGGLHSPR
Trigger: CCTGGGGCTGTGGAGCCCACCTAGGTACAGGGACAAGTAGTGTTTCTTAATGACACAGTCTTTCTCAAGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp GAACAGCAATGCATGCTCGTAATTGCTGGGCCATTTCTTCAGCCATTTTATTTTCACAGAGCTGGAAGCTaGTGGTCCTGCCAGGACCAC +
Preference number: 4 (lower is better)
Translates to: EQQCMLVIAGPFLQPFYFHRAGS*WSCQDH
Trigger: GTGGTCCTGGCAGGACCATCAGCTTCCAGCTCTGTG...AAAATAAAATGGCTGAAGAAATGGCCCAGCAATTACGAGCATGCATTGCTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp GAGAAAGACTGTGTCATTAAGAAACACTACTTGTCCCTGTACCTAGGTGGGCTCCAGGTGGCAAAAACATaGGGTTGCTCAGGCAGAGGA +
Preference number: 4 (lower is better)
Translates to: EKDCVIKKHYLSLYLGGLQVAKT*GCSGRG
Trigger: TCCTCTGCCTGAGCAACCTCATGTTTTTGCCACCTG...GAGCCCACCTAGGTACAGGGACAAGTAGTGTTTCTTAATGACACAGTCTTTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAGCTCCTCCTGTTCATTaGTGCACAGCTGGTAACCGC +
Preference number: 4 (lower is better)
Translates to: CRRHGESVSLIHLCIYTAAPPVH*CTAGNR
Trigger: GCGGTTACCAGCTGTGCATCAATGAACAGGAGGAGC...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGCACACGCACCGAGAGAAGGAAGCCTaGCAGGGACTCTTTGGAACA +
Preference number: 4 (lower is better)
Translates to: WGVCLTNSSLYIHSKHTHREKEA*QGLFGT
Trigger: TGTTCCAAAGAGTCCCTGGCAGGCTTCCTTCTCTCG...GTGCGTGTGCTTGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAACAGGTAGTTGTGGGTaGGCAGCAGTTTGCACTGGC +
Preference number: 4 (lower is better)
Translates to: CRRHGESVSLIHLCIYTATGSCG*AAVCTG
Trigger: GCCAGTGCAAACTGCTGCGCACCCACAACTACCTGT...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGATACAGAAAACCACAATaGCTGGCTGGTCACAGGCAT +
Preference number: 4 (lower is better)
Translates to: PHSWPISQLLYSVLSASGYRKPQ*LAGHRH
Trigger: ATGCCTGTGACCAGCCAGGCATTGTGGTTTTCTGTA...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp GCCAGAACAAACTATATACATAGTGAGAGCCTCTCTCTCTTTCCTCCTTTCTCTCCATGCCGGTCAAGCTaGAGAGCCATAGACAGCAGC +
Preference number: 4 (lower is better)
Translates to: ARTNYIHSESLSLFPPFSPCRSS*RAIDSS
Trigger: GCTGCTGTCTATGGCTCTGCAGCTTGACCGGCATGG...AGAGAAAGGAGGAAAGAGAGAGAGGCTCTCACTATGTATATAGTTTGTTCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGATTCCAGAGTCCATaGCGGTCAAGCTGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: CRRHGESVSLIHLCIYTARFQSP*RSSCRA
Trigger: GGCTCTGCAGCTTGACCGGCATGGACTCTGGAATCT...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAACAGTCATCGGAAGAGCTCCGTACTaGCAAAGGAGCGAAAGGGGC +
Preference number: 4 (lower is better)
Translates to: LRNSPCLRKASCSLKTVIGRAPY*QRSERG
Trigger: GCCCCTTTCGCTCCTTTGCCAGTACGGAGCTCTTCC...GATGACTGTTTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp TCCTGCTCCCTGAAAACAGTCATCCTTGAGAAAGACTGTGTCATTAAGAAACACCCCTTGACAGAGATGTaGCCATGGGCTTGGGGAAGG +
Preference number: 4 (lower is better)
Translates to: SCSLKTVILEKDCVIKKHPLTEM*PWAWGR
Trigger: CCTTCCCCAAGCCCATGGCCACATCTCTGTCAAGGG...GTGTTTCTTAATGACACAGTCTTTCTCAAGGATGACTGTTTTCAGGGAGCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp TCCTGCTCCCTGAAAACAGTCATCCTTGAGAAAGACTGTGTCATTAAGAAACACGAGCTCGCATTGAGCTaGAGCTCCAGGCTAAGGACG +
Preference number: 4 (lower is better)
Translates to: SCSLKTVILEKDCVIKKHELALS*SSRLRT
Trigger: CGTCCTTAGCCTGGAGCTCCAGCTCAATGCGAGCTC...GTGTTTCTTAATGACACAGTCTTTCTCAAGGATGACTGTTTTCAGGGAGCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GCCAGAACAAACTATATACATAGTGAGAGCCTCTCTCTCTTTCCTCCTTTCTCTCCAGGTCCCCGTCTGTaGGAATGGGATTCGAAGCCT +
Preference number: 4 (lower is better)
Translates to: ARTNYIHSESLSLFPPFSPGPRL*EWDSKP
Trigger: AGGCTTCGAATCCCATTCCCACAGACGGGGACCTGG...AGAGAAAGGAGGAAAGAGAGAGAGGCTCTCACTATGTATATAGTTTGTTCTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTGGCACTTCAGCTTCCTTCGTATCGGCTCCGAATaGCCAGGACCACAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: SMLKFVPVTLISWHFSFLRIGSE*PGPQVA
Trigger: TGCCACCTGTGGTCCTGGCCATTCGGAGCCGATACG...AAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
3UTR CAA 72 bp AGGATCGACCCCTTTTCCCTCTGCACTGATGACATTTaGTCTCCTTGGGAAGTATCTCATGTCTGTAGGAGG +
Preference number: 4 (lower is better)
Translates to: RIDPFSLCTDDI*SPWEVSHVCRR
Trigger: CCTCCTACAGACATGAGATACTTCCCAAGGAGACAAAATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp TTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAACAGTCATCGATACAGCACCTGCTTaGTCACAGGCTGCAGACGAG +
Preference number: 4 (lower is better)
Translates to: LRNSPCLRKASCSLKTVIDTAPA*SQAADE
Trigger: CTCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATC...GATGACTGTTTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp TCCTGCTCCCTGAAAACAGTCATCCTTGAGAAAGACTGTGTCATTAAGAAACACGATACAGCACCTGCTTaGTCACAGGCTGCAGACGAG +
Preference number: 4 (lower is better)
Translates to: SCSLKTVILEKDCVIKKHDTAPA*SQAADE
Trigger: CTCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATC...GTGTTTCTTAATGACACAGTCTTTCTCAAGGATGACTGTTTTCAGGGAGCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp TCCTGCTCCCTGAAAACAGTCATCCTTGAGAAAGACTGTGTCATTAAGAAACACGCTCCTCCTGTTCATTaGTGCACAGCTGGTAACCGC +
Preference number: 4 (lower is better)
Translates to: SCSLKTVILEKDCVIKKHAPPVH*CTAGNR
Trigger: GCGGTTACCAGCTGTGCATCAATGAACAGGAGGAGC...GTGTTTCTTAATGACACAGTCTTTCTCAAGGATGACTGTTTTCAGGGAGCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TCTAGGCTCTTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAACGAGAGAAGGAAGCCTaGCAGGGACTCTTTGGAACA +
Preference number: 4 (lower is better)
Translates to: SRLLRNSPCLRKASCSLKREKEA*QGLFGT
Trigger: TGTTCCAAAGAGTCCCTGGCAGGCTTCCTTCTCTCG...TTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAAGAGCCTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAACAGTCATCAGATTCCAGAGTCCATaGCGGTCAAGCTGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: LRNSPCLRKASCSLKTVIRFQSP*RSSCRA
Trigger: GGCTCTGCAGCTTGACCGGCATGGACTCTGGAATCT...GATGACTGTTTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCATGCCAGCAATCAGGCTaGCGGGACACAGGTAGAAAA +
Preference number: 4 (lower is better)
Translates to: CRRHGESVSLIHLCIYTACQQSG*RDTGRK
Trigger: TTTTCTACCTGTGTCCCGGCAGCCTGATTGCTGGCA...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GAACAGCAATGCATGCTCGTAATTGCTGGGCCATTTCTTCAGCCATTTTATTTTGAGCTCGCATTGAGCTaGAGCTCCAGGCTAAGGACG +
Preference number: 4 (lower is better)
Translates to: EQQCMLVIAGPFLQPFYFELALS*SSRLRT
Trigger: CGTCCTTAGCCTGGAGCTCCAGCTCAATGCGAGCTC...AAAATAAAATGGCTGAAGAAATGGCCCAGCAATTACGAGCATGCATTGCTGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp TGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGCACACGCACACAGTCATCCACACATaGGGACAAGAAGGTACGCAG +
Preference number: 4 (lower is better)
Translates to: WGVCLTNSSLYIHSKHTHTVIHT*GQEGTQ
Trigger: CTGCGTACCTTCTTGTCCCCATGTGTGGATGACTGT...GTGCGTGTGCTTGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAACAGTCATCGGCAGAGGAGGAGTGTaGACAGCAGCTGGAATCCAT +
Preference number: 4 (lower is better)
Translates to: LRNSPCLRKASCSLKTVIGRGGV*TAAGIH
Trigger: ATGGATTCCAGCTGCTGTCCACACTCCTCCTCTGCC...GATGACTGTTTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAGGCCAGGACCACAGGTaGCAAAAACATGAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: CRRHGESVSLIHLCIYTAGQDHR*QKHEVA
Trigger: AGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCC...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp GCCAGAACAAACTATATACATAGTGAGAGCCTCTCTCTCTTTCCTCCTTTCTCTGAACTGTCCAAGCTGTaGCCAAGATCCCGAGGGCAA +
Preference number: 4 (lower is better)
Translates to: ARTNYIHSESLSLFPPFSELSKL*PRSRGQ
Trigger: TTGCCCTCGGGATCTTGGCCACAGCTTGGACAGTTC...AGAGAAAGGAGGAAAGAGAGAGAGGCTCTCACTATGTATATAGTTTGTTCTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp TGTAGGCGTCATGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAACGTTGAAGATGCCTaGGGTTCTGTTGGGCAGTGT +
Preference number: 4 (lower is better)
Translates to: CRRHGESVSLIHLCIYTANVEDA*GSVGQC
Trigger: ACACTGCCCAACAGAACCTCAGGCATCTTCAACGTT...TGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCATGACGCCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR TCA 90 bp AGGACCCAGAGGAACATGAGATCTGAGCCAGAACAAACTATATACATAGTGAGACAGGTGGCAAAAACATaGGGTTGCTCAGGCAGAGGA +
Preference number: 4 (lower is better)
Translates to: RTQRNMRSEPEQTIYIVRQVAKT*GCSGRG
Trigger: TCCTCTGCCTGAGCAACCTCATGTTTTTGCCACCTG...TCTCACTATGTATATAGTTTGTTCTGGCTCAGATCTCATGTTCCTCTGGGTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp TTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAACAGTCATCCCACACTGCCAGCAATaGGCATGTGCCAAATGCTGT +
Preference number: 4 (lower is better)
Translates to: LRNSPCLRKASCSLKTVIPHCQQ*ACAKCC
Trigger: ACAGCATTTGGCACATGCTCATTGCTGGCAGTGTGG...GATGACTGTTTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp TTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAACAGTCATCTGCCAGCAATCAGGCTaGCGGGACACAGGTAGAAAA +
Preference number: 4 (lower is better)
Translates to: LRNSPCLRKASCSLKTVICQQSG*RDTGRK
Trigger: TTTTCTACCTGTGTCCCGGCAGCCTGATTGCTGGCA...GATGACTGTTTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CCA 90 bp TTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAAACAGTCATCGGCCAGGACCACAGGTaGCAAAAACATGAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: LRNSPCLRKASCSLKTVIGQDHR*QKHEVA
Trigger: AGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCC...GATGACTGTTTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR TCA 90 bp GAACAGCAATGCATGCTCGTAATTGCTGGGCCATTTCTTCAGCCATTTTATTTTCCACACTGCCAGCAATaGGCATGTGCCAAATGCTGT +
Preference number: 4 (lower is better)
Translates to: EQQCMLVIAGPFLQPFYFPHCQQ*ACAKCC
Trigger: ACAGCATTTGGCACATGCTCATTGCTGGCAGTGTGG...AAAATAAAATGGCTGAAGAAATGGCCCAGCAATTACGAGCATGCATTGCTGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp TCGATGCTGAAATTTGTACCTGTTACTCTAATTTCCTGGCACTTCAGCTTCCTTGACAGGGTCAGATGCTaGGCTGGGAATTGTGACAAG +
Preference number: 4 (lower is better)
Translates to: SMLKFVPVTLISWHFSFLDRVRC*AGNCDK
Trigger: CTTGTCACAATTCCCAGCCCAGCATCTGACCCTGTC...AAGGAAGCTGAAGTGCCAGGAAATTAGAGTAACAGGTACAAATTTCAGCATCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CCA 90 bp GCCAGAACAAACTATATACATAGTGAGAGCCTCTCTCTCTTTCCTCCTTTCTCTACAGTCATCCACACATaGGGACAAGAAGGTACGCAG +
Preference number: 4 (lower is better)
Translates to: ARTNYIHSESLSLFPPFSTVIHT*GQEGTQ
Trigger: CTGCGTACCTTCTTGTCCCCATGTGTGGATGACTGT...AGAGAAAGGAGGAAAGAGAGAGAGGCTCTCACTATGTATATAGTTTGTTCTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR GCA 90 bp AGGACCCAGAGGAACATGAGATCTGAGCCAGAACAAACTATATACATAGTGAGATACAGAAAACCACAATaGCTGGCTGGTCACAGGCAT +
Preference number: 4 (lower is better)
Translates to: RTQRNMRSEPEQTIYIVRYRKPQ*LAGHRH
Trigger: ATGCCTGTGACCAGCCAGGCATTGTGGTTTTCTGTA...TCTCACTATGTATATAGTTTGTTCTGGCTCAGATCTCATGTTCCTCTGGGTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 90 bp GCGCGTCGGCACTGTCTGTGCAACCCCAGCCCCGCCACCCAGCCTTaGACTCGCAGGCCGCGTACAGGTAGTTGTGGGTGCGCAGCAGTT +
Preference number: 5 (lower is better)
Translates to: ARRHCLCNPSPATQP*TRRPRTGSCGCAAV
Trigger: AACTGCTGCGCACCCACAACTACCTGTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGGGCTGGGGTTGCACAGACAGTGCCGACGCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 90 bp GCTCCGGAGGCAGTGGCTGGGTGCCTAGTGACTGGGGCATGTTCATaGCAGCCCCAGGGACCAAGGCACGGGACAGGCTGGGTTGTGGAC +
Preference number: 5 (lower is better)
Translates to: APEAVAGCLVTGACS*QPQGPRHGTGWVVD
Trigger: GTCCACAACCCAGCCTGTCCCGTGCCTTGGTCCCTGGGGCTGCCATGAACATGCCCCAGTCACTAGGCACCCAGCCACTGCCTCCGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 90 bp CAGGCTGCCGGGACACAGGTAGAAAAGCCAGCGGCGCCATGTCGGTaGGTAACAGTGCCGGCGCCGGACGCTGCGAACTGTCCAAGCTGT +
Preference number: 5 (lower is better)
Translates to: QAAGTQVEKPAAPCR*VTVPAPDAANCPSC
Trigger: ACAGCTTGGACAGTTCGCAGCGTCCGGCGCCGGCACTGTTACCCACCGACATGGCGCCGCTGGCTTTTCTACCTGTGTCCCGGCAGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGCCCCGCCACCCAGCCTaGCACTCGCAGGCCGCGTAC +
Preference number: 5 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQPRHPA*HSQAAY
Trigger: GTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGGG...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 90 bp TGCTCAGGCAGAGGAGGAGTGTGGACAGCAGCTGGAATCCATAGGTaGGCGCGTCGGCACTGTCTGTGCAACCCCAGCCCCGCCACCCAG +
Preference number: 5 (lower is better)
Translates to: CSGRGGVWTAAGIHR*ARRHCLCNPSPATQ
Trigger: CTGGGTGGCGGGGCTGGGGTTGCACAGACAGTGCCGACGCGCTCACCTATGGATTCCAGCTGCTGTCCACACTCCTCCTCTGCCTGAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 90 bp CAGTGGTCCCTCCTGGGCCCACAAGTCCCAGCTCCTCCTGTTCATTaGTGCACAGCTGGTAACCGCAGCCCCTGGCCCGGGCTCCAGAAG +
Preference number: 5 (lower is better)
Translates to: QWSLLGPQVPAPPVH*CTAGNRSPWPGLQK
Trigger: CTTCTGGAGCCCGGGCCAGGGGCTGCGGTTACCAGCTGTGCATCAATGAACAGGAGGAGCTGGGACTTGTGGGCCCAGGAGGGACCACTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 90 bp GAATGGGACAGGGTCAGATGCTGGGCTGGGAATTGTGACAAGGGGTaGAACAAGGGCCGAGGCGGAGATAGCGGCCAGGCTGGGGGCAGG +
Preference number: 5 (lower is better)
Translates to: EWDRVRCWAGNCDKG*NKGRGGDSGQAGGR
Trigger: CCTGCCCCCAGCCTGGCCGCTATCTCCGCCTCGGCCCTTGTTCCACCCCTTGTCACAATTCCCAGCCCAGCATCTGACCCTGTCCCATTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 90 bp CACCCCGCACAGAGAACGGAGGGTCAGGAACCAGGTCCCCGTCTGTaGGAATGGGATTCGAAGCCTGGCCACTCTGGAGGTGGCACTGAC +
Preference number: 5 (lower is better)
Translates to: HPAQRTEGQEPGPRL*EWDSKPGHSGGGTD
Trigger: GTCAGTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCATTCCCACAGACGGGGACCTGGTTCCTGACCCTCCGTTCTCTGTGCGGGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 90 bp ACAGCAACAGCAGCAATAGGGCTGGTGGCAGCTGGAGCCCAGACCTaGGTCGAGGCTGGGAGAGGGGTAGAGTATGAGAGAGGCGGGGAC +
Preference number: 5 (lower is better)
Translates to: TATAAIGLVAAGAQT*VEAGRGVEYERGGD
Trigger: GTCCCCGCCTCTCTCATACTCTACCCCTCTCCCAGCCTCGACTCAGGTCTGGGCTCCAGCTGCCACCAGCCCTATTGCTGCTGTTGCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 90 bp GCACAGAGAACGGAGGGTCAGGAACCAGGTCCCCGTCTGTGGGAATaGGATTCGAAGCCTGGCCACTCTGGAGGTGGCACTGACCGAGAG +
Preference number: 5 (lower is better)
Translates to: AQRTEGQEPGPRLWE*DSKPGHSGGGTDRE
Trigger: CTCTCGGTCAGTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCATTCCCACAGACGGGGACCTGGTTCCTGACCCTCCGTTCTCTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGCCCCGCCACCCAGCCTaGCACTCGCAGGCCGCGTAC +
Preference number: 5 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLPRHPA*HSQAAY
Trigger: GTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGGG...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 90 bp CTCATTGCGCAGAGTCGGACGCACTGGCCAGCAGTGCTCAGTGGGTaGTATGGCTCCAGACCCTTCTATAGGAGTCCCCAGGGATGGTGG +
Preference number: 5 (lower is better)
Translates to: LIAQSRTHWPAVLSG*YGSRPFYRSPQGWW
Trigger: CCACCATCCCTGGGGACTCCTATAGAAGGGTCTGGAGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTGCGCAATGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS GCA 90 bp ATCCACACATGGGGACAAGAAGGTACGCAGCCGCACTTCTGCCGTTaGATTGCGGCACCGCACAAACCGAGGTCCCACCCCGCACAGAGA +
Preference number: 5 (lower is better)
Translates to: IHTWGQEGTQPHFCR*IAAPHKPRSHPAQR
Trigger: TCTCTGTGCGGGGTGGGACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCATGTGTGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 90 bp ACAGTCATCCACACATGGGGACAAGAAGGTACGCAGCCGCACTTCTaGCGTTGCATTGCGGCACCGCACAAACCGAGGTCCCACCCCGCA +
Preference number: 5 (lower is better)
Translates to: TVIHTWGQEGTQPHF*RCIAAPHKPRSHPA
Trigger: TGCGGGGTGGGACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCATGTGTGGATGACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 90 bp CGGGACAGGCTGGGTTGTGGACACTCTTGTAACCGCACACAGAGCTaGAAGCTGATGGTCCTGCCAGGACCACGGGATGGCGTCTCCACA +
Preference number: 5 (lower is better)
Translates to: RDRLGCGHSCNRTQS*KLMVLPGPRDGVST
Trigger: TGTGGAGACGCCATCCCGTGGTCCTGGCAGGACCATCAGCTTCCAGCTCTGTGTGCGGTTACAAGAGTGTCCACAACCCAGCCTGTCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp AGCGGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCCCGCCACCCAGCCTaGCACTCGCAGGCCGCGTAC +
Preference number: 5 (lower is better)
Translates to: SGFMLCLGSHSRTSMWHRPRHPA*HSQAAY
Trigger: GTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGGG...TCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCCGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 90 bp CGTGGAAGTGGAAGAGCTCCGTACTGGCAAAGGAGCGAAAGGGGCTaGGCTTGCGGGGCGAGCAGGTGGAGTAATCAGTCAGGAACAGGC +
Preference number: 5 (lower is better)
Translates to: RGSGRAPYWQRSERG*ACGASRWSNQSGTG
Trigger: GCCTGTTCCTGACTGATTACTCCACCTGCTCGCCCCGCAAGCTCAGCCCCTTTCGCTCCTTTGCCAGTACGGAGCTCTTCCACTTCCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS TCA 90 bp GGCTGGGTTGTGGACACTCTTGTAACCGCACACAGAGCTGGAAGCTaGTGGTCCTGCCAGGACCACGGGATGGCGTCTCCACACGCACAT +
Preference number: 5 (lower is better)
Translates to: GWVVDTLVTAHRAGS*WSCQDHGMASPHAH
Trigger: ATGTGCGTGTGGAGACGCCATCCCGTGGTCCTGGCAGGACCATCAGCTTCCAGCTCTGTGTGCGGTTACAAGAGTGTCCACAACCCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS GCA 90 bp ATCCCGAGGGCAAAGAGACTGGGTCCCAGCAGATTCCAGAGTCCATaGCGGTCAAGCTGCAGAGCCATAGACAGCAGCATAGCCCCGAGC +
Preference number: 5 (lower is better)
Translates to: IPRAKRLGPSRFQSP*RSSCRAIDSSIAPS
Trigger: GCTCGGGGCTATGCTGCTGTCTATGGCTCTGCAGCTTGACCGGCATGGACTCTGGAATCTGCTGGGACCCAGTCTCTTTGCCCTCGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 90 bp AAGGTATCCAGCTCATTGCGCAGAGTCGGACGCACTGGCCAGCAGTaGTCAGTGGGTGCTATGGCTCCAGACCCTTCTATAGGAGTCCCC +
Preference number: 5 (lower is better)
Translates to: KVSSSLRRVGRTGQQ*SVGAMAPDPSIGVP
Trigger: GGGGACTCCTATAGAAGGGTCTGGAGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS CCA 90 bp GGCAGCTTCCAGCACGTATCGGCTCCGAATGGCCAGGACCACAGGTaGCAAAAACATGAGGTTGCTCAGGCAGAGGAGGAGTGTGGACAG +
Preference number: 5 (lower is better)
Translates to: GSFQHVSAPNGQDHR*QKHEVAQAEEECGQ
Trigger: CTGTCCACACTCCTCCTCTGCCTGAGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCCATTCGGAGCCGATACGTGCTGGAAGCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 90 bp TGCGAACTGTCCAAGCTGTGGCCAAGATCCCGAGGGCAAAGAGACTaGGTCCCAGCAGATTCCAGAGTCCATGCCGGTCAAGCTGCAGAG +
Preference number: 5 (lower is better)
Translates to: CELSKLWPRSRGQRD*VPADSRVHAGQAAE
Trigger: CTCTGCAGCTTGACCGGCATGGACTCTGGAATCTGCTGGGACCCAGTCTCTTTGCCCTCGGGATCTTGGCCACAGCTTGGACAGTTCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGATACACAGTCACGCTTaGGTCTGGGCAGTGGTCCCC +
Preference number: 5 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQIHSHA*VWAVVP
Trigger: GGGGACCACTGCCCAGACCAAAGCGTGACTGTGTAT...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp TCCAGCATCGTCTCCAGGAAGGTCCCTGTCACTCTCAGGATTTCCTCAGTGTCCGCCGCACTTCTGCCGTaGCATTGCGGCACCGCACAA +
Preference number: 5 (lower is better)
Translates to: SSIVSRKVPVTLRISSVSAALLP*HCGTAQ
Trigger: TTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGC...GGACACTGAGGAAATCCTGAGAGTGACAGGGACCTTCCTGGAGACGATGCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 90 bp GGGACAGACAGATGCCCCTCGACCCCCTACACACACCAGCTGGGCTaGAACCCTGTAGGTGAAGCTTGGCACAAAGACCTTGTACAAGGC +
Preference number: 5 (lower is better)
Translates to: GTDRCPSTPYTHQLG*NPVGEAWHKDLVQG
Trigger: GCCTTGTACAAGGTCTTTGTGCCAAGCTTCACCTACAGGGTTTCAGCCCAGCTGGTGTGTGTAGGGGGTCGAGGGGCATCTGTCTGTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS TCA 90 bp GCACGTATCGGCTCCGAATGGCCAGGACCACAGGTGGCAAAAACATaGGGTTGCTCAGGCAGAGGAGGAGTGTGGACAGCAGCTGGAATC +
Preference number: 5 (lower is better)
Translates to: ARIGSEWPGPQVAKT*GCSGRGGVWTAAGI
Trigger: GATTCCAGCTGCTGTCCACACTCCTCCTCTGCCTGAGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCCATTCGGAGCCGATACGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 90 bp TCTGTGGGAATGGGATTCGAAGCCTGGCCACTCTGGAGGTGGCACTaGCCGAGAGAAGGAAGCCTGCCAGGGACTTTGGAACAGGTCACA +
Preference number: 5 (lower is better)
Translates to: SVGMGFEAWPLWRWH*PREGSLPGTLEQVT
Trigger: TGTGACCTGTTCCAAAGTCCCTGGCAGGCTTCCTTCTCTCGGTCAGTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCATTCCCACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143339.8
CDS GCA 90 bp AAGAGACTGGGTCCCAGCAGATTCCAGAGTCCATGCCGGTCAAGCTaGAGAGCCATAGACAGCAGCATAGCCCCGAGCAGATACAGCACC +
Preference number: 5 (lower is better)
Translates to: KRLGPSRFQSPCRSS*RAIDSSIAPSRYST
Trigger: GGTGCTGTATCTGCTCGGGGCTATGCTGCTGTCTATGGCTCTGCAGCTTGACCGGCATGGACTCTGGAATCTGCTGGGACCCAGTCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 90 bp GTGGACAGAGAAGGTATCCAGCTCATTGCGCAGAGTCGGACGCACTaGCCAGCAGTGCTCAGTGGGTGCTATGGCTCCAGACCCTTCTAT +
Preference number: 5 (lower is better)
Translates to: VDREGIQLIAQSRTH*PAVLSGCYGSRPFY
Trigger: ATAGAAGGGTCTGGAGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTTCTCTGTCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp TCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGATGCCTGAGGTTCTGTaGGGCAGTGTCCAGCTGAGG +
Preference number: 5 (lower is better)
Translates to: SLLQPFCPALLSHWKNPVMPEVL*GSVQLR
Trigger: CCTCAGCTGGACACTGCCCAACAGAACCTCAGGCAT...CACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp GGGAGTGGGGAGGAGGGGAGAAGGTGCGAGCACTGTCCCAGGTTGCTAAAGAGATCGTCGGACAATCAGTaGTGGCTGAAGCAGGTACTG +
Preference number: 5 (lower is better)
Translates to: GSGEEGRRCEHCPRLLKRSSDNQ*WLKQVL
Trigger: CAGTACCTGCTTCAGCCACAACTGATTGTCCGACGA...TCTCTTTAGCAACCTGGGACAGTGCTCGCACCTTCTCCCCTCCTCCCCACTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp GAACATCCATGTGGCACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAAGGTATCCAGCTCATaGCGCAGAGTCGGACGCACT +
Preference number: 5 (lower is better)
Translates to: EHPCGTDLGCRNSGLSRQKVSSS*RRVGRT
Trigger: AGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTT...CTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTGCCACATGGATGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATGCCGCACTTCTGCCGTaGCATTGCGGCACCGCACAA +
Preference number: 5 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHAALLP*HCGTAQ
Trigger: TTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGC...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 90 bp AGTAGTTGTCCCGAGTCTCCACGAAAGCATACAGTAGAACGGCACTaGCAGCAATCAGGCTGCCGGGACACAGGTAGAAAAGCCAGCGGC +
Preference number: 5 (lower is better)
Translates to: SSCPESPRKHTVERH*QQSGCRDTGRKASG
Trigger: GCCGCTGGCTTTTCTACCTGTGTCCCGGCAGCCTGATTGCTGGCAGTGCCGTTCTACTGTATGCTTTCGTGGAGACTCGGGACAACTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 90 bp TTGATGACGGGAGGTGCTCCAGAGCGGAAATACACAGTCACGCTTTaGTCTGGGCAGTGGTCCCCAAAGGTTCCTCCCTGCTCCTTGAAG +
Preference number: 5 (lower is better)
Translates to: LMTGGAPERKYTVTL*SGQWSPKVPPCSLK
Trigger: CTTCAAGGAGCAGGGAGGAACCTTTGGGGACCACTGCCCAGACCAAAGCGTGACTGTGTATTTCCGCTCTGGAGCACCTCCCGTCATCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp TCTAGGCTCTTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAACCCCGCCACCCAGCCTaGCACTCGCAGGCCGCGTAC +
Preference number: 5 (lower is better)
Translates to: SRLLRNSPCLRKASCSLKPRHPA*HSQAAY
Trigger: GTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGGG...TTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAAGAGCCTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp CACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAACACGAAGCCTCTGGCAAAAACATGAGGTaGCTCAGGCAGAGGAGGAGT +
Preference number: 5 (lower is better)
Translates to: HRPGVQELGAKQTEHEASGKNMR*LRQRRS
Trigger: ACTCCTCCTCTGCCTGAGCAACCTCATGTTTTTGCC...AGAGGCTTCGTGTTCTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp CACAGACCTGGGGTGCAGGAACTCGGGGCTAAGCAGACAGAACACGAAGCCTCTAGATACAGCACCTGCTaGATCACAGGCTGCAGACGA +
Preference number: 5 (lower is better)
Translates to: HRPGVQELGAKQTEHEASRYSTC*ITGCRR
Trigger: TCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATCT...AGAGGCTTCGTGTTCTGTCTGCTTAGCCCCGAGTTCCTGCACCCCAGGTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 90 bp CCCCTCGACCCCCTACACACACCAGCTGGGCTGAAACCCTGTAGGTaGAGCTTGGCACAAAGACCTTGTACAAGGCTGAACGATTATGGG +
Preference number: 5 (lower is better)
Translates to: PLDPLHTPAGLKPCR*SLAQRPCTRLNDYG
Trigger: CCCATAATCGTTCAGCCTTGTACAAGGTCTTTGTGCCAAGCTTCACCTACAGGGTTTCAGCCCAGCTGGTGTGTGTAGGGGGTCGAGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS TCA 90 bp CAGTCTTGGCACGGGGAGGCAGCAGGAAGCCCACACTGCCAGCAATaGGCATGTGCCAAATGCTGTGAATGTAGAAGTAGTTGTCCCGAG +
Preference number: 5 (lower is better)
Translates to: QSWHGEAAGSPHCQQ*ACAKCCECRSSCPE
Trigger: CTCGGGACAACTACTTCTACATTCACAGCATTTGGCACATGCTCATTGCTGGCAGTGTGGGCTTCCTGCTGCCTCCCCGTGCCAAGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 90 bp ACAGTCACGCTTTGGTCTGGGCAGTGGTCCCCAAAGGTTCCTCCCTaGTCCTTGAAGATGATGAGGTTCCAAACAGCCAGGAACGTGTCC +
Preference number: 5 (lower is better)
Translates to: TVTLWSGQWSPKVPP*SLKMMRFQTARNVS
Trigger: GGACACGTTCCTGGCTGTTTGGAACCTCATCATCTTCAAGGAGCAGGGAGGAACCTTTGGGGACCACTGCCCAGACCAAAGCGTGACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 90 bp GGTGCTCCAGAGCGGAAATACACAGTCACGCTTTGGTCTGGGCAGTaGTCCCCAAAGGTTCCTCCCTGCTCCTTGAAGATGATGAGGTTC +
Preference number: 5 (lower is better)
Translates to: GAPERKYTVTLWSGQ*SPKVPPCSLKMMRF
Trigger: GAACCTCATCATCTTCAAGGAGCAGGGAGGAACCTTTGGGGACCACTGCCCAGACCAAAGCGTGACTGTGTATTTCCGCTCTGGAGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp GGGGCTAAGCAGACAGAACACGAAGCCTCTCAGCATTTAGCAGCCTGTCTGACTACTTCTGCCGTTGCATaGCGGCACCGCACAAACCGA +
Preference number: 5 (lower is better)
Translates to: GAKQTEHEASQHLAACLTTSAVA*RHRTNR
Trigger: TCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGT...AGTCAGACAGGCTGCTAAATGCTGAGAGGCTTCGTGTTCTGTCTGCTTAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGACTTCTGCCGTTGCATaGCGGCACCGCACAAACCGA +
Preference number: 5 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLTSAVA*RHRTNR
Trigger: TCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGT...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAGCCGCACTTCTGCCGTaGCATTGCGGCACCGCACAA +
Preference number: 5 (lower is better)
Translates to: PHSWPISQLLYSVLSASGAALLP*HCGTAQ
Trigger: TTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGC...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp CTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAATCCCGTGGCAAAAACATGAGGTaGCTCAGGCAGAGGAGGAGT +
Preference number: 5 (lower is better)
Translates to: LSPAALLPSTAKPLEKSRGKNMR*LRQRRS
Trigger: ACTCCTCCTCTGCCTGAGCAACCTCATGTTTTTGCC...ACGGGATTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp CCCTCTCTCTCTCCTGCAGCCCTTCTGCCCAGCACTGCTAAGCCACTGGAAAAAGGCAAAAACATGAGGTaGCTCAGGCAGAGGAGGAGT +
Preference number: 5 (lower is better)
Translates to: PSLSPAALLPSTAKPLEKGKNMR*LRQRRS
Trigger: ACTCCTCCTCTGCCTGAGCAACCTCATGTTTTTGCC...TTTTTCCAGTGGCTTAGCAGTGCTGGGCAGAAGGGCTGCAGGAGAGAGAGAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 90 bp AAGATGATGAGGTTCCAAACAGCCAGGAACGTGTCCTCAGGAACGTaGAAGTGGAAGAGCTCCGTACTGGCAAAGGAGCGAAAGGGGCTG +
Preference number: 5 (lower is better)
Translates to: KMMRFQTARNVSSGT*KWKSSVLAKERKGL
Trigger: CAGCCCCTTTCGCTCCTTTGCCAGTACGGAGCTCTTCCACTTCCACGTTCCTGAGGACACGTTCCTGGCTGTTTGGAACCTCATCATCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp GGCTTCATGCTGTGTCTGGGTAGCCATTCAAGAACATCCATGTGGCACAGACCTGCCACAGAGCTTGAGTaGTGTAGGGGTGGAGCCTTG +
Preference number: 5 (lower is better)
Translates to: GFMLCLGSHSRTSMWHRPATELE*CRGGAL
Trigger: CAAGGCTCCACCCCTACACAACTCAAGCTCTGTGGC...AGGTCTGTGCCACATGGATGTTCTTGAATGGCTACCCAGACACAGCATGAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp CCCGTGACTTGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTACTTCTGCCGTTGCATaGCGGCACCGCACAAACCGA +
Preference number: 5 (lower is better)
Translates to: PVTCFSRIDPFSLCTDDITSAVA*RHRTNR
Trigger: TCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGT...AATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACAAGTCACGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp AGGACCCAGAGGAACATGAGATCTGAGCCAGAACAAACTATATACATAGTGAGACGAAAGGGGCTGAGCTaGCGGGGCGAGCAGGTGGAG +
Preference number: 5 (lower is better)
Translates to: RTQRNMRSEPEQTIYIVRRKGLS*RGEQVE
Trigger: CTCCACCTGCTCGCCCCGCAAGCTCAGCCCCTTTCG...TCTCACTATGTATATAGTTTGTTCTGGCTCAGATCTCATGTTCCTCTGGGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAACTTCTGCCGTTGCATaGCGGCACCGCACAAACCGA +
Preference number: 5 (lower is better)
Translates to: PHSWPISQLLYSVLSASGTSAVA*RHRTNR
Trigger: TCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGT...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp TGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGCACACGCACGCCGCACTTCTGCCGTaGCATTGCGGCACCGCACAA +
Preference number: 5 (lower is better)
Translates to: WGVCLTNSSLYIHSKHTHAALLP*HCGTAQ
Trigger: TTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGC...GTGCGTGTGCTTGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp GGGGCTAAGCAGACAGAACACGAAGCCTCTCAGCATTTAGCAGCCTGTCTGACTGGCAAAAACATGAGGTaGCTCAGGCAGAGGAGGAGT +
Preference number: 5 (lower is better)
Translates to: GAKQTEHEASQHLAACLTGKNMR*LRQRRS
Trigger: ACTCCTCCTCTGCCTGAGCAACCTCATGTTTTTGCC...AGTCAGACAGGCTGCTAAATGCTGAGAGGCTTCGTGTTCTGTCTGCTTAGCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp AGGCACAGAGAGAAGAATTGGGGGAAATGTGAGGCTGGCTCCTTCTCCAGTCTGAGATACAGCACCTGCTaGATCACAGGCTGCAGACGA +
Preference number: 5 (lower is better)
Translates to: RHREKNWGKCEAGSFSSLRYSTC*ITGCRR
Trigger: TCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATCT...CAGACTGGAGAAGGAGCCAGCCTCACATTTCCCCCAATTCTTCTCTCTGTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 90 bp ACAAAGACCTTGTACAAGGCTGAACGATTATGGGAGGAAAGGGTTTaGTCTGAGGGACGGCCAGGAACCAGTACAGCCACATCCAGCAGT +
Preference number: 5 (lower is better)
Translates to: TKTLYKAERLWEERV*SEGRPGTSTATSSS
Trigger: ACTGCTGGATGTGGCTGTACTGGTTCCTGGCCGTCCCTCAGAGCAAACCCTTTCCTCCCATAATCGTTCAGCCTTGTACAAGGTCTTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 90 bp AGGAACCAGTACAGCCACATCCAGCAGTCGTCGGACAATCAGTTGTaGCTGAAGCAGGTACTGACATTCATCCTGGAGACCCTTGACAGA +
Preference number: 5 (lower is better)
Translates to: RNQYSHIQQSSDNQL*LKQVLTFILETLDR
Trigger: TCTGTCAAGGGTCTCCAGGATGAATGTCAGTACCTGCTTCAGCCACAACTGATTGTCCGACGACTGCTGGATGTGGCTGTACTGGTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp AGGGATACTGGTGTACAAGCCACGGGGCAGAAACCAGACAGTAGCTTCCAGCATGTTCCTCCCTGCTCCTaGAAGATGATGAGGTTCCAA +
Preference number: 5 (lower is better)
Translates to: RDTGVQATGQKPDSSFQHVPPCS*KMMRFQ
Trigger: TTGGAACCTCATCATCTTCAAGGAGCAGGGAGGAAC...ATGCTGGAAGCTACTGTCTGGTTTCTGCCCCGTGGCTTGTACACCAGTATCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp CCCGTGACTTGTTTCTCCAGGATCGACCCCTTTTCCCTCTGCACTGATGACATTAGATACAGCACCTGCTaGATCACAGGCTGCAGACGA +
Preference number: 5 (lower is better)
Translates to: PVTCFSRIDPFSLCTDDIRYSTC*ITGCRR
Trigger: TCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATCT...AATGTCATCAGTGCAGAGGGAAAAGGGGTCGATCCTGGAGAAACAAGTCACGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp CCTCACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAAGGGGCTGCTAACGTaGAAGATGCCTGAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: PHSWPISQLLYSVLSASGKGLLT*KMPEVL
Trigger: CAGAACCTCAGGCATCTTCAACGTTAGCAGCCCCTT...TCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp CACTCCTGGCCAATCAGTCAGCTACTTTATTCAGTACTCAGTGCCTCAGGAAGAAAGGTATCCAGCTCATaGCGCAGAGTCGGACGCACT +
Preference number: 5 (lower is better)
Translates to: HSWPISQLLYSVLSASGRKVSSS*RRVGRT
Trigger: AGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTT...TCTTCCTGAGGCACTGAGTACTGAATAAAGTAGCTGACTGATTGGCCAGGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp GAGAAAGACTGTGTCATTAAGAAACACTACTTGTCCCTGTACCTAGGTGGGCTCAAGGTATCCAGCTCATaGCGCAGAGTCGGACGCACT +
Preference number: 5 (lower is better)
Translates to: EKDCVIKKHYLSLYLGGLKVSSS*RRVGRT
Trigger: AGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTT...GAGCCCACCTAGGTACAGGGACAAGTAGTGTTTCTTAATGACACAGTCTTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp TGGGGAGTCTGTCTCACTAATTCATCTCTGTATATACACAGCAAGCACACGCACAAGGTATCCAGCTCATaGCGCAGAGTCGGACGCACT +
Preference number: 5 (lower is better)
Translates to: WGVCLTNSSLYIHSKHTHKVSSS*RRVGRT
Trigger: AGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTT...GTGCGTGTGCTTGCTGTGTATATACAGAGATGAATTAGTGAGACAGACTCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS-3UTR CAA 90 bp TCTAGGCTCTTAAGAAATTCTCCATGTCTTAGGAAAGCCTCCTGCTCCCTGAAACCCAGTGGAAGAGACTaGGGCAAACATAGAGATGGG +
Preference number: 5 (lower is better)
Translates to: SRLLRNSPCLRKASCSLKPSGRD*GKHRDG
Trigger: CCCATCTCTATGTTTGCCCAAGTCTCTTCCACTGGG...TTTCAGGGAGCAGGAGGCTTTCCTAAGACATGGAGAATTTCTTAAGAGCCTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS-3UTR CAA 90 bp GCCAGAACAAACTATATACATAGTGAGAGCCTCTCTCTCTTTCCTCCTTTCTCTAGATACAGCACCTGCTaGATCACAGGCTGCAGACGA +
Preference number: 5 (lower is better)
Translates to: ARTNYIHSESLSLFPPFSRYSTC*ITGCRR
Trigger: TCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATCT...AGAGAAAGGAGGAAAGAGAGAGAGGCTCTCACTATGTATATAGTTTGTTCTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 90 bp TTAAGGAGCCCAGGAAATCACAGAACTGAAGTACATCATAGTCCATaGTACAGAAAACCACAATGCCTGGCTGGTCACAGGCATGATAGA +
Preference number: 5 (lower is better)
Translates to: LRSPGNHRTEVHHSP*YRKPQCLAGHRHDR
Trigger: TCTATCATGCCTGTGACCAGCCAGGCATTGTGGTTTTCTGTATCATGGACTATGATGTACTTCAGTTCTGTGATTTCCTGGGCTCCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 90 bp GAACTGAAGTACATCATAGTCCATGATACAGAAAACCACAATGCCTaGCTGGTCACAGGCATGATAGAACGTGGAGAAGAACATGGTGAA +
Preference number: 5 (lower is better)
Translates to: ELKYIIVHDTENHNA*LVTGMIERGEEHGE
Trigger: TTCACCATGTTCTTCTCCACGTTCTATCATGCCTGTGACCAGCCAGGCATTGTGGTTTTCTGTATCATGGACTATGATGTACTTCAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 72 bp CATTCGCTGGGACACCGGCCGGGGCCTGGACAGGTTTaGGAAGCGGGGCGAGGGCGTGGCCGGAGGCCAAGG +
Preference number: 6 (lower is better)
Translates to: HSLGHRPGPGQV*EAGRGRGRRPR
Trigger: CCTTGGCCTCCGGCCACGCCCTCGCCCCGCTTCCCAAACCTGTCCAGGCCCCGGCCGGTGTCCCAGCGAATG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CAA 72 bp ACATTCGCTGGGACACCGGCCGGGGCCTGGACAGGTTaGGGAAGCGGGGCGAGGGCGTGGCCGGAGGCCAAG +
Preference number: 6 (lower is better)
Translates to: TFAGTPAGAWTG*GSGARAWPEAK
Trigger: CTTGGCCTCCGGCCACGCCCTCGCCCCGCTTCCCAAACCTGTCCAGGCCCCGGCCGGTGTCCCAGCGAATGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CAA 90 bp CCGCAGCCCCTGGCCCGGGCTCCAGAAGGGACCCGGCGGTCAGTCTaGGCACGGGGAGGCAGCAGGAAGCCCACACTGCCAGCAATGAGC +
Preference number: 6 (lower is better)
Translates to: PQPLARAPEGTRRSV*ARGGSRKPTLPAMS
Trigger: GCTCATTGCTGGCAGTGTGGGCTTCCTGCTGCCTCCCCGTGCCAAGACTGACCGCCGGGTCCCTTCTGGAGCCCGGGCCAGGGGCTGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 72 bp TGGCCCGGGCTCCAGAAGGGACCCGGCGGTCAGTCTTaGCACGGGGAGGCAGCAGGAAGCCCACACTGCCAG +
Preference number: 6 (lower is better)
Translates to: WPGLQKGPGGQS*HGEAAGSPHCQ
Trigger: CTGGCAGTGTGGGCTTCCTGCTGCCTCCCCGTGCCAAGACTGACCGCCGGGTCCCTTCTGGAGCCCGGGCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CAA 72 bp CTGGCCCGGGCTCCAGAAGGGACCCGGCGGTCAGTCTaGGCACGGGGAGGCAGCAGGAAGCCCACACTGCCA +
Preference number: 6 (lower is better)
Translates to: LARAPEGTRRSV*ARGGSRKPTLP
Trigger: TGGCAGTGTGGGCTTCCTGCTGCCTCCCCGTGCCAAGACTGACCGCCGGGTCCCTTCTGGAGCCCGGGCCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 72 bp GGGAAGCGGGGCGAGGGCGTGGCCGGAGGCCAAGGCTaGAATTGGGATAGGATGAGGGGCCGGGACAAGGGC +
Preference number: 6 (lower is better)
Translates to: GKRGEGVAGGQG*NWDRMRGRDKG
Trigger: GCCCTTGTCCCGGCCCCTCATCCTATCCCAATTTCAGCCTTGGCCTCCGGCCACGCCCTCGCCCCGCTTCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS GCA 72 bp CACTGTCTGTGCAACCCCAGCCCCGCCACCCAGCCTTaGACTCGCAGGCCGCGTACAGGTAGTTGTGGGTGC +
Preference number: 6 (lower is better)
Translates to: HCLCNPSPATQP*TRRPRTGSCGC
Trigger: GCACCCACAACTACCTGTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGGGCTGGGGTTGCACAGACAGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 72 bp GCAGTGGCTGGGTGCCTAGTGACTGGGGCATGTTCATaGCAGCCCCAGGGACCAAGGCACGGGACAGGCTGG +
Preference number: 6 (lower is better)
Translates to: AVAGCLVTGACS*QPQGPRHGTGW
Trigger: CCAGCCTGTCCCGTGCCTTGGTCCCTGGGGCTGCCATGAACATGCCCCAGTCACTAGGCACCCAGCCACTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp GGGACACAGGTAGAAAAGCCAGCGGCGCCATGTCGGTaGGTAACAGTGCCGGCGCCGGACGCTGCGAACTGT +
Preference number: 6 (lower is better)
Translates to: GTQVEKPAAPCR*VTVPAPDAANC
Trigger: ACAGTTCGCAGCGTCCGGCGCCGGCACTGTTACCCACCGACATGGCGCCGCTGGCTTTTCTACCTGTGTCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 72 bp TGGGGACAAGAAGGTACGCAGCCGCACTTCTGCCGTTaGATTGCGGCACCGCACAAACCGAGGTCCCACCCC +
Preference number: 6 (lower is better)
Translates to: WGQEGTQPHFCR*IAAPHKPRSHP
Trigger: GGGGTGGGACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 72 bp GAGCTGGAAGCTGATGGTCCTGCCAGGACCACGGGATaGCGTCTCCACACGCACATAGACCCAGTGGCCCCA +
Preference number: 6 (lower is better)
Translates to: ELEADGPARTTG*RLHTHIDPVAP
Trigger: TGGGGCCACTGGGTCTATGTGCGTGTGGAGACGCCATCCCGTGGTCCTGGCAGGACCATCAGCTTCCAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp GTCCAGCACCGGCAACAGCCTCAGGGCAAATACAGCTaGGCGCTCAGGTGGAAGGGCCACGCTGGGACCAAA +
Preference number: 6 (lower is better)
Translates to: VQHRQQPQGKYS*ALRWKGHAGTK
Trigger: TTTGGTCCCAGCGTGGCCCTTCCACCTGAGCGCCCAGCTGTATTTGCCCTGAGGCTGTTGCCGGTGCTGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS CAA 72 bp GACAAGAAGGTACGCAGCCGCACTTCTGCCGTTGCATaGCGGCACCGCACAAACCGAGGTCCCACCCCGCAC +
Preference number: 6 (lower is better)
Translates to: DKKVRSRTSAVA*RHRTNRGPTPH
Trigger: GTGCGGGGTGGGACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CAA 90 bp ACACATGGGGACAAGAAGGTACGCAGCCGCACTTCTGCCGTTGCATaGCGGCACCGCACAAACCGAGGTCCCACCCCGCACAGAGAACGG +
Preference number: 6 (lower is better)
Translates to: THGDKKVRSRTSAVA*RHRTNRGPTPHRER
Trigger: CCGTTCTCTGTGCGGGGTGGGACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCATGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CAA 90 bp CATCCACACATGGGGACAAGAAGGTACGCAGCCGCACTTCTGCCGTaGCATTGCGGCACCGCACAAACCGAGGTCCCACCCCGCACAGAG +
Preference number: 6 (lower is better)
Translates to: HPHMGTRRYAAALLP*HCGTAQTEVPPRTE
Trigger: CTCTGTGCGGGGTGGGACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCATGTGTGGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 72 bp CCAGACCTGAGTCGAGGCTGGGAGAGGGGTAGAGTATaGGAGAGGCGGGGACCCAGTGGAAGAGACTTGGGC +
Preference number: 6 (lower is better)
Translates to: PDLSRGWERGRV*ERRGPSGRDLG
Trigger: GCCCAAGTCTCTTCCACTGGGTCCCCGCCTCTCTCATACTCTACCCCTCTCCCAGCCTCGACTCAGGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp AGGGTCAGATGCTGGGCTGGGAATTGTGACAAGGGGTaGAACAAGGGCCGAGGCGGAGATAGCGGCCAGGCT +
Preference number: 6 (lower is better)
Translates to: RVRCWAGNCDKG*NKGRGGDSGQA
Trigger: AGCCTGGCCGCTATCTCCGCCTCGGCCCTTGTTCCACCCCTTGTCACAATTCCCAGCCCAGCATCTGACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp ACGGAGGGTCAGGAACCAGGTCCCCGTCTGTGGGAATaGGATTCGAAGCCTGGCCACTCTGGAGGTGGCACT +
Preference number: 6 (lower is better)
Translates to: TEGQEPGPRLWE*DSKPGHSGGGT
Trigger: AGTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCATTCCCACAGACGGGGACCTGGTTCCTGACCCTCCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CAA 72 bp ATGGGGACAAGAAGGTACGCAGCCGCACTTCTGCCGTaGCATTGCGGCACCGCACAAACCGAGGTCCCACCC +
Preference number: 6 (lower is better)
Translates to: MGTRRYAAALLP*HCGTAQTEVPP
Trigger: GGGTGGGACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CAA 90 bp TCCAGCTGGCATACTGAGGCACCTCCACAGGCCACAGAGCTTGAGTaGTGTAGGGGTGGAGCCTTGGGACGTAGGCGCAGTGTCAGGGGA +
Preference number: 6 (lower is better)
Translates to: SSWHTEAPPQATELE*CRGGALGRRRSVRG
Trigger: TCCCCTGACACTGCGCCTACGTCCCAAGGCTCCACCCCTACACAACTCAAGCTCTGTGGCCTGTGGAGGTGCCTCAGTATGCCAGCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS TCA 72 bp GCAGCAATAGGGCTGGTGGCAGCTGGAGCCCAGACCTaGGTCGAGGCTGGGAGAGGGGTAGAGTATGAGAGA +
Preference number: 6 (lower is better)
Translates to: AAIGLVAAGAQT*VEAGRGVEYER
Trigger: TCTCTCATACTCTACCCCTCTCCCAGCCTCGACTCAGGTCTGGGCTCCAGCTGCCACCAGCCCTATTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS GCA 72 bp CAGAGTCGGACGCACTGGCCAGCAGTGCTCAGTGGGTaGTATGGCTCCAGACCCTTCTATAGGAGTCCCCAG +
Preference number: 6 (lower is better)
Translates to: QSRTHWPAVLSG*YGSRPFYRSPQ
Trigger: CTGGGGACTCCTATAGAAGGGTCTGGAGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS GCA 72 bp CACACATGGGGACAAGAAGGTACGCAGCCGCACTTCTaGCGTTGCATTGCGGCACCGCACAAACCGAGGTCC +
Preference number: 6 (lower is better)
Translates to: HTWGQEGTQPHF*RCIAAPHKPRS
Trigger: GGACCTCGGTTTGTGCGGTGCCGCAATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCATGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS GCA 72 bp GCCCCGAGCAGATACAGCACCTGCTTGATCACAGGCTaGAGACGAGCCATGGCTATGACGGTGACCCACACG +
Preference number: 6 (lower is better)
Translates to: APSRYSTCLITG*RRAMAMTVTHT
Trigger: CGTGTGGGTCACCGTCATAGCCATGGCTCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATCTGCTCGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 72 bp TCATGGCAGCCCCAGGGACCAAGGCACGGGACAGGCTaGGTTGTGGACACTCTTGTAACCGCACACAGAGCT +
Preference number: 6 (lower is better)
Translates to: SWQPQGPRHGTG*VVDTLVTAHRA
Trigger: AGCTCTGTGTGCGGTTACAAGAGTGTCCACAACCCAGCCTGTCCCGTGCCTTGGTCCCTGGGGCTGCCATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp GTTACATTTTCCTGGCGCAGAGAGCTCGCATTGAGCTaGAGCTCCAGGCTAAGGACGCCCCCGCTGTCCAGC +
Preference number: 6 (lower is better)
Translates to: VTFSWRRELALS*SSRLRTPPLSS
Trigger: GCTGGACAGCGGGGGCGTCCTTAGCCTGGAGCTCCAGCTCAATGCGAGCTCTCTGCGCCAGGAAAATGTAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS CCA 72 bp CAGAGAACGGAGGGTCAGGAACCAGGTCCCCGTCTGTaGGAATGGGATTCGAAGCCTGGCCACTCTGGAGGT +
Preference number: 6 (lower is better)
Translates to: QRTEGQEPGPRL*EWDSKPGHSGG
Trigger: ACCTCCAGAGTGGCCAGGCTTCGAATCCCATTCCCACAGACGGGGACCTGGTTCCTGACCCTCCGTTCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CCA 72 bp GGCACTGACCGAGAGAAGGAAGCCTGCCAGGGACTTTaGAACAGGTCACAGCAGCATCCCCCAGGCTCAAGG +
Preference number: 6 (lower is better)
Translates to: GTDREKEACQGL*NRSQQHPPGSR
Trigger: CCTTGAGCCTGGGGGATGCTGCTGTGACCTGTTCCAAAGTCCCTGGCAGGCTTCCTTCTCTCGGTCAGTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143339.8
CDS TCA 72 bp GGAAGAGCTCCGTACTGGCAAAGGAGCGAAAGGGGCTaGGCTTGCGGGGCGAGCAGGTGGAGTAATCAGTCA +
Preference number: 6 (lower is better)
Translates to: GRAPYWQRSERG*ACGASRWSNQS
Trigger: TGACTGATTACTCCACCTGCTCGCCCCGCAAGCTCAGCCCCTTTCGCTCCTTTGCCAGTACGGAGCTCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS TCA 72 bp GTGGACACTCTTGTAACCGCACACAGAGCTGGAAGCTaGTGGTCCTGCCAGGACCACGGGATGGCGTCTCCA +
Preference number: 6 (lower is better)
Translates to: VDTLVTAHRAGS*WSCQDHGMASP
Trigger: TGGAGACGCCATCCCGTGGTCCTGGCAGGACCATCAGCTTCCAGCTCTGTGTGCGGTTACAAGAGTGTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp GGAGGTGCTCCAGAGCGGAAATACACAGTCACGCTTTaGTCTGGGCAGTGGTCCCCAAAGGTTCCTCCCTGC +
Preference number: 6 (lower is better)
Translates to: GGAPERKYTVTL*SGQWSPKVPPC
Trigger: GCAGGGAGGAACCTTTGGGGACCACTGCCCAGACCAAAGCGTGACTGTGTATTTCCGCTCTGGAGCACCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp AGGCCACAGAGCTTGAGTTGTGTAGGGGTGGAGCCTTaGGACGTAGGCGCAGTGTCAGGGGACAGACAGATG +
Preference number: 6 (lower is better)
Translates to: RPQSLSCVGVEP*DVGAVSGDRQM
Trigger: CATCTGTCTGTCCCCTGACACTGCGCCTACGTCCCAAGGCTCCACCCCTACACAACTCAAGCTCTGTGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp CTGGGTTGTGGACACTCTTGTAACCGCACACAGAGCTaGAAGCTGATGGTCCTGCCAGGACCACGGGATGGC +
Preference number: 6 (lower is better)
Translates to: LGCGHSCNRTQS*KLMVLPGPRDG
Trigger: GCCATCCCGTGGTCCTGGCAGGACCATCAGCTTCCAGCTCTGTGTGCGGTTACAAGAGTGTCCACAACCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp GAAGGTATCCAGCTCATTGCGCAGAGTCGGACGCACTaGCCAGCAGTGCTCAGTGGGTGCTATGGCTCCAGA +
Preference number: 6 (lower is better)
Translates to: EGIQLIAQSRTH*PAVLSGCYGSR
Trigger: TCTGGAGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS CAA 72 bp GGGAGGTGCTCCAGAGCGGAAATACACAGTCACGCTTaGGTCTGGGCAGTGGTCCCCAAAGGTTCCTCCCTG +
Preference number: 6 (lower is better)
Translates to: GRCSRAEIHSHA*VWAVVPKGSSL
Trigger: CAGGGAGGAACCTTTGGGGACCACTGCCCAGACCAAAGCGTGACTGTGTATTTCCGCTCTGGAGCACCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CAA 72 bp CATACTGAGGCACCTCCACAGGCCACAGAGCTTGAGTaGTGTAGGGGTGGAGCCTTGGGACGTAGGCGCAGT +
Preference number: 6 (lower is better)
Translates to: HTEAPPQATELE*CRGGALGRRRS
Trigger: ACTGCGCCTACGTCCCAAGGCTCCACCCCTACACAACTCAAGCTCTGTGGCCTGTGGAGGTGCCTCAGTATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS TCA 72 bp GGCTCCGAATGGCCAGGACCACAGGTGGCAAAAACATaGGGTTGCTCAGGCAGAGGAGGAGTGTGGACAGCA +
Preference number: 6 (lower is better)
Translates to: GSEWPGPQVAKT*GCSGRGGVWTA
Trigger: TGCTGTCCACACTCCTCCTCTGCCTGAGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCCATTCGGAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 72 bp ATGGGATTCGAAGCCTGGCCACTCTGGAGGTGGCACTaGCCGAGAGAAGGAAGCCTGCCAGGGACTTTGGAA +
Preference number: 6 (lower is better)
Translates to: MGFEAWPLWRWH*PREGSLPGTLE
Trigger: TTCCAAAGTCCCTGGCAGGCTTCCTTCTCTCGGTCAGTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143339.8
CDS GCA 72 bp AGCTCATTGCGCAGAGTCGGACGCACTGGCCAGCAGTaGTCAGTGGGTGCTATGGCTCCAGACCCTTCTATA +
Preference number: 6 (lower is better)
Translates to: SSLRRVGRTGQQ*SVGAMAPDPSI
Trigger: TATAGAAGGGTCTGGAGCCATAGCACCCACTGAGCACTGCTGGCCAGTGCGTCCGACTCTGCGCAATGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS CCA 72 bp TCCAAGCTGTGGCCAAGATCCCGAGGGCAAAGAGACTaGGTCCCAGCAGATTCCAGAGTCCATGCCGGTCAA +
Preference number: 6 (lower is better)
Translates to: SKLWPRSRGQRD*VPADSRVHAGQ
Trigger: TTGACCGGCATGGACTCTGGAATCTGCTGGGACCCAGTCTCTTTGCCCTCGGGATCTTGGCCACAGCTTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS TCA 72 bp AGATGCCCCTCGACCCCCTACACACACCAGCTGGGCTaGAACCCTGTAGGTGAAGCTTGGCACAAAGACCTT +
Preference number: 6 (lower is better)
Translates to: RCPSTPYTHQLG*NPVGEAWHKDL
Trigger: AAGGTCTTTGTGCCAAGCTTCACCTACAGGGTTTCAGCCCAGCTGGTGTGTGTAGGGGGTCGAGGGGCATCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp TTAAGCAAACGCGGGGAATGGGACAGGGTCAGATGCTaGGCTGGGAATTGTGACAAGGGGTGGAACAAGGGC +
Preference number: 6 (lower is better)
Translates to: LSKRGEWDRVRC*AGNCDKGWNKG
Trigger: GCCCTTGTTCCACCCCTTGTCACAATTCCCAGCCCAGCATCTGACCCTGTCCCATTCCCCGCGTTTGCTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp CAAACAGCCAGGAACGTGTCCTCAGGAACGTGGAAGTaGAAGAGCTCCGTACTGGCAAAGGAGCGAAAGGGG +
Preference number: 6 (lower is better)
Translates to: QTARNVSSGTWK*KSSVLAKERKG
Trigger: CCCCTTTCGCTCCTTTGCCAGTACGGAGCTCTTCCACTTCCACGTTCCTGAGGACACGTTCCTGGCTGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp TCAGCTGACACAGATGCTGCTGACAGTGGTCCCTCCTaGGCCCACAAGTCCCAGCTCCTCCTGTTCATTGAT +
Preference number: 6 (lower is better)
Translates to: SADTDAADSGPS*AHKSQLLLFID
Trigger: ATCAATGAACAGGAGGAGCTGGGACTTGTGGGCCCAGGAGGGACCACTGTCAGCAGCATCTGTGTCAGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000167153.8
CDS CAA 72 bp GCCAAGAACCAGTCCCCAGGTAAGGGGCTGCTAACGTaGAAGATGCCTGAGGTTCTGTTGGGCAGTGTCCAG +
Preference number: 6 (lower is better)
Translates to: AKNQSPGKGLLT*KMPEVLLGSVQ
Trigger: CTGGACACTGCCCAACAGAACCTCAGGCATCTTCAACGTTAGCAGCCCCTTACCTGGGGACTGGTTCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CAA 90 bp ACGCTTTGGTCTGGGCAGTGGTCCCCAAAGGTTCCTCCCTGCTCCTaGAAGATGATGAGGTTCCAAACAGCCAGGAACGTGTCCTCAGGA +
Preference number: 6 (lower is better)
Translates to: TLWSGQWSPKVPPCS*KMMRFQTARNVSSG
Trigger: TCCTGAGGACACGTTCCTGGCTGTTTGGAACCTCATCATCTTCAAGGAGCAGGGAGGAACCTTTGGGGACCACTGCCCAGACCAAAGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CAA 90 bp ATTGATGACGGGAGGTGCTCCAGAGCGGAAATACACAGTCACGCTTaGGTCTGGGCAGTGGTCCCCAAAGGTTCCTCCCTGCTCCTTGAA +
Preference number: 6 (lower is better)
Translates to: IDDGRCSRAEIHSHA*VWAVVPKGSSLLLE
Trigger: TTCAAGGAGCAGGGAGGAACCTTTGGGGACCACTGCCCAGACCAAAGCGTGACTGTGTATTTCCGCTCTGGAGCACCTCCCGTCATCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS GCA 72 bp AGATGTAGAAGTGGACAGAGAAGGTATCCAGCTCATTaGGCAGAGTCGGACGCACTGGCCAGCAGTGCTCAG +
Preference number: 6 (lower is better)
Translates to: RCRSGQRRYPAH*AESDALASSAQ
Trigger: CTGAGCACTGCTGGCCAGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTTCTCTGTCCACTTCTACATCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000107864.8
ENSMUST00000107865.9
ENSMUST00000107866.9
ENSMUST00000143339.8
ENSMUST00000167153.8
CDS CCA 72 bp AGGTTCCAAACAGCCAGGAACGTGTCCTCAGGAACGTaGAAGTGGAAGAGCTCCGTACTGGCAAAGGAGCGA +
Preference number: 6 (lower is better)
Translates to: RFQTARNVSSGT*KWKSSVLAKER
Trigger: TCGCTCCTTTGCCAGTACGGAGCTCTTCCACTTCCACGTTCCTGAGGACACGTTCCTGGCTGTTTGGAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp GAGCGGAAATACACAGTCACGCTTTGGTCTGGGCAGTaGTCCCCAAAGGTTCCTCCCTGCTCCTTGAAGATG +
Preference number: 6 (lower is better)
Translates to: ERKYTVTLWSGQ*SPKVPPCSLKM
Trigger: CATCTTCAAGGAGCAGGGAGGAACCTTTGGGGACCACTGCCCAGACCAAAGCGTGACTGTGTATTTCCGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CAA 90 bp GCCAGGAACCAGTACAGCCACATCCAGCAGTCGTCGGACAATCAGTaGTGGCTGAAGCAGGTACTGACATTCATCCTGGAGACCCTTGAC +
Preference number: 6 (lower is better)
Translates to: ARNQYSHIQQSSDNQ*WLKQVLTFILETLD
Trigger: GTCAAGGGTCTCCAGGATGAATGTCAGTACCTGCTTCAGCCACAACTGATTGTCCGACGACTGCTGGATGTGGCTGTACTGGTTCCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS GCA 72 bp TTGTACAAGGCTGAACGATTATGGGAGGAAAGGGTTTaGTCTGAGGGACGGCCAGGAACCAGTACAGCCACA +
Preference number: 6 (lower is better)
Translates to: LYKAERLWEERV*SEGRPGTSTAT
Trigger: TGTGGCTGTACTGGTTCCTGGCCGTCCCTCAGAGCAAACCCTTTCCTCCCATAATCGTTCAGCCTTGTACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CCA 72 bp TACAGCCACATCCAGCAGTCGTCGGACAATCAGTTGTaGCTGAAGCAGGTACTGACATTCATCCTGGAGACC +
Preference number: 6 (lower is better)
Translates to: YSHIQQSSDNQL*LKQVLTFILET
Trigger: GGTCTCCAGGATGAATGTCAGTACCTGCTTCAGCCACAACTGATTGTCCGACGACTGCTGGATGTGGCTGTA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9
CDS CAA 72 bp CAGTACAGCCACATCCAGCAGTCGTCGGACAATCAGTaGTGGCTGAAGCAGGTACTGACATTCATCCTGGAG +
Preference number: 6 (lower is better)
Translates to: QYSHIQQSSDNQ*WLKQVLTFILE
Trigger: CTCCAGGATGAATGTCAGTACCTGCTTCAGCCACAACTGATTGTCCGACGACTGCTGGATGTGGCTGTACTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107866.9