Pregenerated sensors for TMEM89 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025652Ensembl transcript IDs: ENSMUST00000026744.6, ENSMUST00000192852.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATGGCGTCCAGCATGTGAAGGACCCTGAGGACCAGCGTGCGGTCTaGGACAGTGGGCTGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGT | + |
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Preference number: 1 (lower is better) Translates to: DGVQHVKDPEDQRAV*DSGLLFPVFAGAGG Trigger: ACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTGTCTCAGACCGCACGCTGGTCCTCAGGGTCCTTCACATGCTGGACGCCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR TCA 90 bp | GGCCCTCAATGTGGAGCAGGATGGCGTCCAGCATGTGAAGGACCCTaGGGACCAGCGTGCGGTCTGAGACAGTGGGCTGCTCTTTCCAGT | + |
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Preference number: 1 (lower is better) Translates to: GPQCGAGWRPACEGP*GPACGLRQWAALSS Trigger: ACTGGAAAGAGCAGCCCACTGTCTCAGACCGCACGCTGGTCCTCAGGGTCCTTCACATGCTGGACGCCATCCTGCTCCACATTGAGGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR CCA 90 bp | TCACTGGGTCTCCAGAGGCTAGGTGGCCCTGGGGCCCATGGTGGCTaGATGAAGAATGGGAATGGGGACAGATGGACCAGAGGACTAGTC | + |
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Preference number: 1 (lower is better) Translates to: SLGLQRLGGPGAHGG*MKNGNGDRWTRGLV Trigger: GACTAGTCCTCTGGTCCATCTGTCCCCATTCCCATTCTTCATCCAGCCACCATGGGCCCCAGGGCCACCTAGCCTCTGGAGACCCAGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR CCA 90 bp | CCTGGGGCCCATGGTGGCTGGATGAAGAATGGGAATGGGGACAGATaGACCAGAGGACTAGTCCTAAGGAATGATAGGGATGGATTGGTT | + |
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Preference number: 1 (lower is better) Translates to: PGAHGGWMKNGNGDR*TRGLVLRNDRDGLV Trigger: AACCAATCCATCCCTATCATTCCTTAGGACTAGTCCTCTGGTCCATCTGTCCCCATTCCCATTCTTCATCCAGCCACCATGGGCCCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTGGGCTGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCACTGCTGGGAGCTGAGGCTAGGTGGCCCTaGGGCCCATGGTGGCTGGAT | + |
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Preference number: 2 (lower is better) Translates to: QWAALSSVCRSWRSLLGAEARWP*GPWWLD Trigger: ATCCAGCCACCATGGGCCCCAGGGCCACCTAGCCTC...AGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTGGGCTGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCACTGCTGGGAGCTTGGCCCTGGGGCCCATaGTGGCTGGATGAAGAATGG | + |
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Preference number: 2 (lower is better) Translates to: QWAALSSVCRSWRSLLGAWPWGP*WLDEEW Trigger: CCATTCTTCATCCAGCCACCATGGGCCCCAGGGCCA...AGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR-3UTR TCA 90 bp | GCCCCTGCAGGTGGCCCTCAATGTGGAGCAGGATGGCGTCCAGCATGTGAAGGACCCATGGTGGCTGGATaGAGAATGGGAATGGGGACA | + |
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Preference number: 2 (lower is better) Translates to: APAGGPQCGAGWRPACEGPMVAG*RMGMGT Trigger: TGTCCCCATTCCCATTCTTCATCCAGCCACCATGGG...TCCTTCACATGCTGGACGCCATCCTGCTCCACATTGAGGGCCACCTGCAGGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCCTGCAGGTGGCCCTCAATGTGGAGCAGGATGGCGTCCAGCATGTGAAGGAGCTCTTTCCAGTGTTTaGCGGAGCTGGAGGTCACTG | + |
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Preference number: 2 (lower is better) Translates to: APAGGPQCGAGWRPACEGALSSV*RSWRSL Trigger: CAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGC...TCCTTCACATGCTGGACGCCATCCTGCTCCACATTGAGGGCCACCTGCAGGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR-3UTR CCA 90 bp | GTGCGGTCTGAGACAGTGGGCTGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCCCCTGGGGCCCATGGTaGCTGGATGAAGAATGGGAA | + |
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Preference number: 2 (lower is better) Translates to: VRSETVGCSFQCLPELEVPWGPW*LDEEWE Trigger: TTCCCATTCTTCATCCAGCCACCATGGGCCCCAGGG...GACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTGTCTCAGACCGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTGGGCTGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCACTGCTGGGAGCTTGGCTGGATGAAGAATaGGAATGGGGACAGATGGAC | + |
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Preference number: 2 (lower is better) Translates to: QWAALSSVCRSWRSLLGAWLDEE*EWGQMD Trigger: GTCCATCTGTCCCCATTCCCATTCTTCATCCAGCCA...AGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTTTTATTTGAATTTGTTGTTGGGAAGCCAGCCCCTGCAGGTGGCCCTCAATAAGTGTCAAAGAGGATaGGGGGACAGGGGAATAGGT | + |
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Preference number: 2 (lower is better) Translates to: PFYLNLLLGSQPLQVALNKCQRG*GDRGIG Trigger: ACCTATTCCCCTGTCCCCCCATCCTCTTTGACACTT...ATTGAGGGCCACCTGCAGGGGCTGGCTTCCCAACAACAAATTCAAATAAAAGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR TCA 72 bp | TGTGGAGCAGGATGGCGTCCAGCATGTGAAGGACCCTaGGGACCAGCGTGCGGTCTGAGACAGTGGGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: CGAGWRPACEGP*GPACGLRQWAA Trigger: AGCAGCCCACTGTCTCAGACCGCACGCTGGTCCTCAGGGTCCTTCACATGCTGGACGCCATCCTGCTCCACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR TCA 72 bp | TGGCCCTCAATGTGGAGCAGGATGGCGTCCAGCATGTaGAGGACCCTGAGGACCAGCGTGCGGTCTGAGACA | + |
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Preference number: 3 (lower is better) Translates to: WPSMWSRMASSM*RTLRTSVRSET Trigger: TGTCTCAGACCGCACGCTGGTCCTCAGGGTCCTTCACATGCTGGACGCCATCCTGCTCCACATTGAGGGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR GCA 72 bp | ACCCTGAGGACCAGCGTGCGGTCTGAGACAGTGGGCTaGTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCACT | + |
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Preference number: 3 (lower is better) Translates to: TLRTSVRSETVG*SFQCLPELEVT Trigger: AGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTGTCTCAGACCGCACGCTGGTCCTCAGGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR TCA 72 bp | CAGCATGTGAAGGACCCTGAGGACCAGCGTGCGGTCTaGGACAGTGGGCTGCTCTTTCCAGTGTTTGCCGGA | + |
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Preference number: 3 (lower is better) Translates to: QHVKDPEDQRAV*DSGLLFPVFAG Trigger: TCCGGCAAACACTGGAAAGAGCAGCCCACTGTCTCAGACCGCACGCTGGTCCTCAGGGTCCTTCACATGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR CCA 72 bp | AGGTGGCCCTGGGGCCCATGGTGGCTGGATGAAGAATaGGAATGGGGACAGATGGACCAGAGGACTAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: RWPWGPWWLDEE*EWGQMDQRTSP Trigger: AGGACTAGTCCTCTGGTCCATCTGTCCCCATTCCCATTCTTCATCCAGCCACCATGGGCCCCAGGGCCACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR GCA 72 bp | TGCGGTCTGAGACAGTGGGCTGCTCTTTCCAGTGTTTaGCGGAGCTGGAGGTCACTGCTGGGAGCTGAAATA | + |
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Preference number: 3 (lower is better) Translates to: CGLRQWAALSSV*RSWRSLLGAEI Trigger: TATTTCAGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTGTCTCAGACCGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR GCA 72 bp | CTGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCACTaGTGGGAGCTGAAATATAGGACCAGTGTGAGGGTG | + |
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Preference number: 3 (lower is better) Translates to: LLFPVFAGAGGH*WELKYRTSVRV Trigger: CACCCTCACACTGGTCCTATATTTCAGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR CCA 72 bp | CATGGTGGCTGGATGAAGAATGGGAATGGGGACAGATaGACCAGAGGACTAGTCCTAAGGAATGATAGGGAT | + |
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Preference number: 3 (lower is better) Translates to: HGGWMKNGNGDR*TRGLVLRNDRD Trigger: ATCCCTATCATTCCTTAGGACTAGTCCTCTGGTCCATCTGTCCCCATTCCCATTCTTCATCCAGCCACCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTTTTATTTGAATTTGTTGTTGGGAAGCCAGCCCCTGCAGGTGGCCCTCAATAATGATAGGGATGGATaGGTTGTAGACATAGGTTCT | + |
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Preference number: 3 (lower is better) Translates to: PFYLNLLLGSQPLQVALNNDRDG*VVDIGS Trigger: AGAACCTATGTCTACAACCAATCCATCCCTATCATT...ATTGAGGGCCACCTGCAGGGGCTGGCTTCCCAACAACAAATTCAAATAAAAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR CCA 90 bp | TTGTTGGGAAGCCAGCCCCTGCAGGTGGCCCTCAATGTGGAGCAGGATGGCGTCGATATCTGGGCTGTTTaGCTGGCAGCCCCAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LLGSQPLQVALNVEQDGVDIWAV*LAAPGL Trigger: CAGCCCTGGGGCTGCCAGCCAAACAGCCCAGATATC...GACGCCATCCTGCTCCACATTGAGGGCCACCTGCAGGGGCTGGCTTCCCAACAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR CCA 90 bp | TTGTTGGGAAGCCAGCCCCTGCAGGTGGCCCTCAATGTGGAGCAGGATGGCGTCAGGAAGAAGGTTGAGTaGGAGGCATGGCCCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: LLGSQPLQVALNVEQDGVRKKVE*EAWPRG Trigger: CCCCCTGGGCCATGCCTCCCACTCAACCTTCTTCCT...GACGCCATCCTGCTCCACATTGAGGGCCACCTGCAGGGGCTGGCTTCCCAACAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR CCA 90 bp | GCCCCTGCAGGTGGCCCTCAATGTGGAGCAGGATGGCGTCCAGCATGTGAAGGATCCAGGCTATTTGGCTaGCAGCCCCAGATATCTGGG | + |
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Preference number: 4 (lower is better) Translates to: APAGGPQCGAGWRPACEGSRLFG*QPQISG Trigger: CCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGA...TCCTTCACATGCTGGACGCCATCCTGCTCCACATTGAGGGCCACCTGCAGGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR TCA 90 bp | GGTTCTGTGGAGATGCAAGAACAGGTCACAGGGAGGAGGACAGGATCAGACAGGGCACTATCACACGGCTaGCAACCAGCAACATGGTGG | + |
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Preference number: 4 (lower is better) Translates to: GSVEMQEQVTGRRTGSDRALSHG*QPATWW Trigger: CCACCATGTTGCTGGTTGTCAGCCGTGTGATAGTGC...CCTGTCTGATCCTGTCCTCCTCCCTGTGACCTGTTCTTGCATCTCCACAGAACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR CCA 90 bp | CCCTTTTATTTGAATTTGTTGTTGGGAAGCCAGCCCCTGCAGGTGGCCCTCAATGTTGAGTGGGAGGCATaGCCCAGGGGGCATGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: PFYLNLLLGSQPLQVALNVEWEA*PRGHEQ Trigger: CTGCTCATGCCCCCTGGGCCATGCCTCCCACTCAAC...ATTGAGGGCCACCTGCAGGGGCTGGCTTCCCAACAACAAATTCAAATAAAAGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR GCA 90 bp | AAGAATGGGAATGGGGACAGATGGACCAGAGGACTAGTCCTAAGGAATGATAGGCAGCCACGGGGTAGATaGGATTTCCTCCCAGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: KNGNGDRWTRGLVLRNDRQPRGR*DFLPGP Trigger: TGGGCCTGGGAGGAAATCGCATCTACCCCGTGGCTG...CCTATCATTCCTTAGGACTAGTCCTCTGGTCCATCTGTCCCCATTCCCATTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR CCA 90 bp | AATGATAGGGATGGATTGGTTGTAGACATAGGTTCTGTGGAGATGCAAGAACAGTCTGGGCTGTTTGGCTaGCAGCCCCAGGGCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: NDRDGLVVDIGSVEMQEQSGLFG*QPQGCK Trigger: CTTGCAGCCCTGGGGCTGCCAGCCAAACAGCCCAGA...CTGTTCTTGCATCTCCACAGAACCTATGTCTACAACCAATCCATCCCTATCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR TCA 90 bp | AATGATAGGGATGGATTGGTTGTAGACATAGGTTCTGTGGAGATGCAAGAACAGATGGCCCAGGGGGCATaGGCAGAAGCAGGAACTGCA | + |
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Preference number: 4 (lower is better) Translates to: NDRDGLVVDIGSVEMQEQMAQGA*AEAGTA Trigger: TGCAGTTCCTGCTTCTGCTCATGCCCCCTGGGCCAT...CTGTTCTTGCATCTCCACAGAACCTATGTCTACAACCAATCCATCCCTATCATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR CCA 90 bp | AATGATAGGGATGGATTGGTTGTAGACATAGGTTCTGTGGAGATGCAAGAACAGGCTATCCAGGCTATTTaGCTGGCAGCCCCAGATATC | + |
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Preference number: 4 (lower is better) Translates to: NDRDGLVVDIGSVEMQEQAIQAI*LAAPDI Trigger: GATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGC...CTGTTCTTGCATCTCCACAGAACCTATGTCTACAACCAATCCATCCCTATCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR GCA 90 bp | ATGAAGAATGGGAATGGGGACAGATGGACCAGAGGACTAGTCCTAAGGAATGATAACCCAGACTGTTCTTaGAGCTATCCAGGCTATTTG | + |
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Preference number: 4 (lower is better) Translates to: MKNGNGDRWTRGLVLRNDNPDCS*SYPGYL Trigger: CAAATAGCCTGGATAGCTGCAAGAACAGTCTGGGTT...ATCATTCCTTAGGACTAGTCCTCTGGTCCATCTGTCCCCATTCCCATTCTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS CCA 90 bp | CCAGGGCAACCCAGACTGTTCTTGCAGCTATCCAGGCTATTTGGCTaGCAGCCCCAGATATCTGGGCTGTTTGGCTGGCAGCCCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: PGQPRLFLQLSRLFG*QPQISGLFGWQPQG Trigger: GCCCTGGGGCTGCCAGCCAAACAGCCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGCTGCAAGAACAGTCTGGGTTGCCCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS-3UTR CAA 90 bp | GTGCGGTCTGAGACAGTGGGCTGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCAGATATCTGGGCTGTTaGGCTGGCAGCCCCAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: VRSETVGCSFQCLPELEVRYLGC*AGSPRA Trigger: AGCCCTGGGGCTGCCAGCCAAACAGCCCAGATATCT...GACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTGTCTCAGACCGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS CCA 90 bp | GTTCTTGCAGCTATCCAGGCTATTTGGCTGGCAGCCCCAGATATCTaGGCTGTTTGGCTGGCAGCCCCAGGGCTGCAAGTCCAGCCCTAC | + |
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Preference number: 5 (lower is better) Translates to: VLAAIQAIWLAAPDI*AVWLAAPGLQVQPY Trigger: GTAGGGCTGGACTTGCAGCCCTGGGGCTGCCAGCCAAACAGCCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGCTGCAAGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS GCA 90 bp | TTCCTCCCAGGCCCAACCAGTAGCCAGGGCAACCCAGACTGTTCTTaGAGCTATCCAGGCTATTTGGCTGGCAGCCCCAGATATCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: FLPGPTSSQGNPDCS*SYPGYLAGSPRYLG Trigger: GCCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGCTGCAAGAACAGTCTGGGTTGCCCTGGCTACTGGTTGGGCCTGGGAGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS CCA 90 bp | GTAGCCAGGGCAACCCAGACTGTTCTTGCAGCTATCCAGGCTATTTaGCTGGCAGCCCCAGATATCTGGGCTGTTTGGCTGGCAGCCCCA | + |
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Preference number: 5 (lower is better) Translates to: VARATQTVLAAIQAI*LAAPDIWAVWLAAP Trigger: TGGGGCTGCCAGCCAAACAGCCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGCTGCAAGAACAGTCTGGGTTGCCCTGGCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS TCA 90 bp | TGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCACTGCTGGGAGCTaGCCCTTAGCAACCTTAGCTCGCCATCGGTGCACTATCACACGG | + |
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Preference number: 5 (lower is better) Translates to: CSFQCLPELEVTAGS*PLATLARHRCTITR Trigger: CCGTGTGATAGTGCACCGATGGCGAGCTAAGGTTGCTAAGGGTCAGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026744.6 |
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| CDS TCA 90 bp | AGCAGAAGCAGGAACTGCAGAGGACAGAGTGGAGCTGTGCTCACCTaGCCCTTAGCAACCTTAGCTCGCCATCGGTGCACTATCACACGG | + |
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Preference number: 5 (lower is better) Translates to: SRSRNCRGQSGAVLT*PLATLARHRCTITR Trigger: CCGTGTGATAGTGCACCGATGGCGAGCTAAGGTTGCTAAGGGTCAGGTGAGCACAGCTCCACTCTGTCCTCTGCAGTTCCTGCTTCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS-3UTR CAA 90 bp | GGACTAGTCCTAAGGAATGATAGGGATGGATTGGTTGTAGACATAGGTTCTGTGCAAGTCCAGCCCTACTaGGTACCAGAGGGGCCTAGA | + |
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Preference number: 5 (lower is better) Translates to: GLVLRNDRDGLVVDIGSVQVQPY*VPEGPR Trigger: TCTAGGCCCCTCTGGTACCAAGTAGGGCTGGACTTG...CACAGAACCTATGTCTACAACCAATCCATCCCTATCATTCCTTAGGACTAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS CCA 72 bp | GCTATTTGGCTGGCAGCCCCAGATATCTGGGCTGTTTaGCTGGCAGCCCCAGGGCTGCAAGTCCAGCCCTAC | + |
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Preference number: 6 (lower is better) Translates to: AIWLAAPDIWAV*LAAPGLQVQPY Trigger: GTAGGGCTGGACTTGCAGCCCTGGGGCTGCCAGCCAAACAGCCCAGATATCTGGGGCTGCCAGCCAAATAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS GCA 72 bp | TGCGGTCTGAGACAGTGGGCTGCTCTTTCCAGTGTTTaGCGGAGCTGGAGGTCACTGCTGGGAGCTGACCCT | + |
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Preference number: 6 (lower is better) Translates to: CGLRQWAALSSV*RSWRSLLGADP Trigger: AGGGTCAGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCAGCCCACTGTCTCAGACCGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026744.6 |
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| CDS CCA 72 bp | GCTATCCAGGCTATTTGGCTGGCAGCCCCAGATATCTaGGCTGTTTGGCTGGCAGCCCCAGGGCTGCAAGTC | + |
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Preference number: 6 (lower is better) Translates to: AIQAIWLAAPDI*AVWLAAPGLQV Trigger: GACTTGCAGCCCTGGGGCTGCCAGCCAAACAGCCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS TCA 72 bp | CAGTGTTTGCCGGAGCTGGAGGTCACTGCTGGGAGCTaGCCCTTAGCAACCTTAGCTCGCCATCGGTGCACT | + |
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Preference number: 6 (lower is better) Translates to: QCLPELEVTAGS*PLATLARHRCT Trigger: AGTGCACCGATGGCGAGCTAAGGTTGCTAAGGGTCAGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026744.6 |
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| CDS GCA 72 bp | GGCCCAACCAGTAGCCAGGGCAACCCAGACTGTTCTTaGAGCTATCCAGGCTATTTGGCTGGCAGCCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: GPTSSQGNPDCS*SYPGYLAGSPR Trigger: TCTGGGGCTGCCAGCCAAATAGCCTGGATAGCTGCAAGAACAGTCTGGGTTGCCCTGGCTACTGGTTGGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS CCA 72 bp | AGCCAGGGTGATAGGAAGAAGGTTGAGTGGGAGGCATaGCCCAGGGGGCATGAGCAGAAGCAGGAACTGCAG | + |
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Preference number: 6 (lower is better) Translates to: SQGDRKKVEWEA*PRGHEQKQELQ Trigger: CTGCAGTTCCTGCTTCTGCTCATGCCCCCTGGGCCATGCCTCCCACTCAACCTTCTTCCTATCACCCTGGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000192852.2 |
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| CDS CAA 72 bp | CAGCCCTACTTGGTACCAGAGGGGCCTAGACCAGCCTaGGCTAGGGACAGGCATCACCAACAGGAACAGCGA | + |
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Preference number: 6 (lower is better) Translates to: QPYLVPEGPRPA*ARDRHHQQEQR Trigger: TCGCTGTTCCTGTTGGTGATGCCTGTCCCTAGCCAAGGCTGGTCTAGGCCCCTCTGGTACCAAGTAGGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS CAA 90 bp | AGTAGCCAGGGCAACCCAGACTGTTCTTGCAGCTATCCAGGCTATTaGGCTGGCAGCCCCAGATATCTGGGCTGTTTGGCTGGCAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: SSQGNPDCSCSYPGY*AGSPRYLGCLAGSP Trigger: GGGGCTGCCAGCCAAACAGCCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGCTGCAAGAACAGTCTGGGTTGCCCTGGCTACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS GCA 72 bp | CTGCTCTTTCCAGTGTTTGCCGGAGCTGGAGGTCACTaGTGGGAGCTGACCCTTAGCAACCTTAGCTCGCCA | + |
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Preference number: 6 (lower is better) Translates to: LLFPVFAGAGGH*WELTLSNLSSP Trigger: TGGCGAGCTAAGGTTGCTAAGGGTCAGCTCCCAGCAGTGACCTCCAGCTCCGGCAAACACTGGAAAGAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026744.6 |
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| CDS CCA 72 bp | GCAACCCAGACTGTTCTTGCAGCTATCCAGGCTATTTaGCTGGCAGCCCCAGATATCTGGGCTGTTTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ATQTVLAAIQAI*LAAPDIWAVWL Trigger: CAGCCAAACAGCCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGCTGCAAGAACAGTCTGGGTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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| CDS CAA 72 bp | GGCAACCCAGACTGTTCTTGCAGCTATCCAGGCTATTaGGCTGGCAGCCCCAGATATCTGGGCTGTTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: GNPDCSCSYPGY*AGSPRYLGCLA Trigger: AGCCAAACAGCCCAGATATCTGGGGCTGCCAGCCAAATAGCCTGGATAGCTGCAAGAACAGTCTGGGTTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026744.6 ENSMUST00000192852.2 |
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