Pregenerated sensors for TMEM88B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073680Ensembl transcript IDs: ENSMUST00000097742.3
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGACACCCTTTCTCCCTCTTCTGAGGGACCCTGTTGCCATCTCCTaGCGACTTCGAGCACTGCTCTCAGAGCCCCAAAGCAGCCGCCCG | + |
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Preference number: 1 (lower is better) Translates to: GTPFLPLLRDPVAIS*RLRALLSEPQSSRP Trigger: CGGGCGGCTGCTTTGGGGCTCTGAGAGCAGTGCTCGAAGTCGCCAGGAGATGGCAACAGGGTCCCTCAGAAGAGGGAGAAAGGGTGTCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR CCA 90 bp | GTGCTAGGAGCTGGAGAGATGGCTCAGGGTCCTTTAGAAGACAGCTaGCTGCTCTTCCAGAGGACCCAGGTTGCAGTCCTAGAACCCACA | + |
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Preference number: 1 (lower is better) Translates to: VLGAGEMAQGPLEDS*LLFQRTQVAVLEPT Trigger: TGTGGGTTCTAGGACTGCAACCTGGGTCCTCTGGAAGAGCAGCCAGCTGTCTTCTAAAGGACCCTGAGCCATCTCTCCAGCTCCTAGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR CCA 90 bp | TATGCGCTGATACCTGACCCCGAATGCAAGCTGAGTGCTAGGAGCTaGAGAGATGGCTCAGGGTCCTTTAGAAGACAGCTGGCTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: YALIPDPECKLSARS*RDGSGSFRRQLAAL Trigger: AAGAGCAGCCAGCTGTCTTCTAAAGGACCCTGAGCCATCTCTCCAGCTCCTAGCACTCAGCTTGCATTCGGGGTCAGGTATCAGCGCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR GCA 90 bp | AGAATGAGCTCCAGTTCTAGATATGCGCTGATACCTGACCCCGAATaGAAGCTGAGTGCTAGGAGCTGGAGAGATGGCTCAGGGTCCTTT | + |
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Preference number: 1 (lower is better) Translates to: RMSSSSRYALIPDPE*KLSARSWRDGSGSF Trigger: AAAGGACCCTGAGCCATCTCTCCAGCTCCTAGCACTCAGCTTGCATTCGGGGTCAGGTATCAGCGCATATCTAGAACTGGAGCTCATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR TCA 90 bp | ACCACAGAATTGGGTGGAAGACATAATATGCTTTTCTGCTTTTCTTaGAGGGACACCCTTTCTCCCTCTTCTGAGGGACCCTGTTGCCAT | + |
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Preference number: 1 (lower is better) Translates to: TTELGGRHNMLFCFS*RDTLSPSSEGPCCH Trigger: ATGGCAACAGGGTCCCTCAGAAGAGGGAGAAAGGGTGTCCCTTCAAGAAAAGCAGAAAAGCATATTATGTCTTCCACCCAATTCTGTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR TCA 90 bp | CTACAGAGTAAGTTCCAGCATAGCAAAGGCTACACAGAGAAACCCTaGCTTAAAAATAAACAGATAGGGGCTGGAGAGATGGCTCAGTGG | + |
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Preference number: 1 (lower is better) Translates to: LQSKFQHSKGYTEKP*LKNKQIGAGEMAQW Trigger: CCACTGAGCCATCTCTCCAGCCCCTATCTGTTTATTTTTAAGTCAGGGTTTCTCTGTGTAGCCTTTGCTATGCTGGAACTTACTCTGTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR TCA 90 bp | CAGATAGATAGGCAGGCCGGCAAACAGACAAAAGACAACCCATCATaGCAGGTTTATGTCATCTTACATTTCCCAGATCTCACTACACTA | + |
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Preference number: 1 (lower is better) Translates to: QIDRQAGKQTKDNPS*QVYVILHFPDLTTL Trigger: TAGTGTAGTGAGATCTGGGAAATGTAAGATGACATAAACCTGTCATGATGGGTTGTCTTTTGTCTGTTTGCCGGCCTGCCTATCTATCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR GCA 90 bp | AAGTTGTCCTCTCTGACTGTCACAACACACATACATTGTGGCACATaGACATCCATACATGTACACACACACACATCTAGCAACAAGCTA | + |
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Preference number: 1 (lower is better) Translates to: KLSSLTVTTHIHCGT*TSIHVHTHTSSNKL Trigger: TAGCTTGTTGCTAGATGTGTGTGTGTGTACATGTATGGATGTGCATGTGCCACAATGTATGTGTGTTGTGACAGTCAGAGAGGACAACTT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR GCA 90 bp | CTCTGGACAAGACTATTAAAGTTAGTGCCTGCCTTAGGTTTCTATTaGTTTGATAAAACATCAGGATCAAAGGGCTGGAGAGATAGCTCG | + |
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Preference number: 1 (lower is better) Translates to: LWTRLLKLVPALGFY*FDKTSGSKGWRDSS Trigger: CGAGCTATCTCTCCAGCCCTTTGATCCTGATGTTTTATCAAAGCAATAGAAACCTAAGGCAGGCACTAACTTTAATAGTCTTGTCCAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CCA 90 bp | GTCTACAGAGTAAGTTCCAGCATAGCAAAGGCTACACAGAGAAACCCTGACTTAGGGGGTCGAGGGACCTaGGAGGCTCTTGACGCGCAG | + |
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Preference number: 2 (lower is better) Translates to: VYRVSSSIAKATQRNPDLGGRGT*EALDAQ Trigger: CTGCGCGTCAAGAGCCTCCCAGGTCCCTCGACCCCC...TAAGTCAGGGTTTCTCTGTGTAGCCTTTGCTATGCTGGAACTTACTCTGTAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CCA 90 bp | ATAAAGAGTTCTCTGAACACAGGACAGAGAGACATGCTGGGGTGCAGAGAGGGGACAAGGTCAAGACCTTaGAGGACTCAGCTGATCCCG | + |
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Preference number: 2 (lower is better) Translates to: IKSSLNTGQRDMLGCREGTRSRP*RTQLIP Trigger: CGGGATCAGCTGAGTCCTCCAAGGTCTTGACCTTGT...CCCCTCTCTGCACCCCAGCATGTCTCTCTGTCCTGTGTTCAGAGAACTCTTTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR TCA 90 bp | ACTACACTAAAAGTAGTCAGGGCAAGAACTCAAGGCAAGAACCTGGAGGCAGGACCTTTCTCCCTCTTCTaGGGGACCCTGTTGCCATCT | + |
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Preference number: 2 (lower is better) Translates to: TTLKVVRARTQGKNLEAGPFSLF*GTLLPS Trigger: AGATGGCAACAGGGTCCCTCAGAAGAGGGAGAAAGG...TCCTGCCTCCAGGTTCTTGCCTTGAGTTCTTGCCCTGACTACTTTTAGTGTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR TCA 90 bp | TTAATCTCAGCCTTTGGGAGGCAGAGGCAGGTAGATTTTTGTGAGTTCAAGACCACCCCGAATGCAAGCTaGGTGCTAGGAGCTGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: LISAFGRQRQVDFCEFKTTPNAS*VLGAGE Trigger: CTCTCCAGCTCCTAGCACTCAGCTTGCATTCGGGGT...GGTCTTGAACTCACAAAAATCTACCTGCCTCTGCCTCCCAAAGGCTGAGATTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CCA 90 bp | ACACTAAAAGTAGTCAGGGCAAGAACTCAAGGCAAGAACCTGGAGGCAGGAATTCTGAGTGCTAGGAGCTaGAGAGATGGCTCAGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: TLKVVRARTQGKNLEAGILSARS*RDGSGS Trigger: GGACCCTGAGCCATCTCTCCAGCTCCTAGCACTCAG...AATTCCTGCCTCCAGGTTCTTGCCTTGAGTTCTTGCCCTGACTACTTTTAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR TCA 90 bp | ATAAAGAGTTCTCTGAACACAGGACAGAGAGACATGCTGGGGTGCAGAGAGGGGCTTTTCTGCTTTTCTTaGAGGGACACCCTTTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: IKSSLNTGQRDMLGCREGLFCFS*RDTLSP Trigger: GGGAGAAAGGGTGTCCCTTCAAGAAAAGCAGAAAAG...CCCCTCTCTGCACCCCAGCATGTCTCTCTGTCCTGTGTTCAGAGAACTCTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR TCA 90 bp | AAAAATAAACAGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGTGCTGACTTGCCAAGTCGGCTGCTaGCCACAGAATTGGGTGGAA | + |
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Preference number: 2 (lower is better) Translates to: KNKQIGAGEMAQWLRVLTCQVGC*PQNWVE Trigger: TTCCACCCAATTCTGTGGTCAGCAGCCGACTTGGCA...AGTCAGCACTCTTAACCACTGAGCCATCTCTCCAGCCCCTATCTGTTTATTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CCA 90 bp | TTAATCTCAGCCTTTGGGAGGCAGAGGCAGGTAGATTTTTGTGAGTTCAAGACCCCTTTAGAAGACAGCTaGCTGCTCTTCCAGAGGACC | + |
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Preference number: 2 (lower is better) Translates to: LISAFGRQRQVDFCEFKTPLEDS*LLFQRT Trigger: GGTCCTCTGGAAGAGCAGCCAGCTGTCTTCTAAAGG...GGTCTTGAACTCACAAAAATCTACCTGCCTCTGCCTCCCAAAGGCTGAGATTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR TCA 90 bp | GAAAATAAAGAGTTCTCTGAACACAGGACAGAGAGACATGCTGGGGTGCAGAGAATCCGGGCAATAGTTTaGCCATGGACCCAACTGATC | + |
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Preference number: 2 (lower is better) Translates to: ENKEFSEHRTERHAGVQRIRAIV*PWTQLI Trigger: GATCAGTTGGGTCCATGGTCAAACTATTGCCCGGAT...TCTCTGCACCCCAGCATGTCTCTCTGTCCTGTGTTCAGAGAACTCTTTATTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR GCA 90 bp | AAAAATAAACAGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGTGCTGACTATACCTGACCCCGAATaGAAGCTGAGTGCTAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: KNKQIGAGEMAQWLRVLTIPDPE*KLSARS Trigger: GCTCCTAGCACTCAGCTTGCATTCGGGGTCAGGTAT...AGTCAGCACTCTTAACCACTGAGCCATCTCTCCAGCCCCTATCTGTTTATTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CCA 90 bp | ACACTAAAAGTAGTCAGGGCAAGAACTCAAGGCAAGAACCTGGAGGCAGGAATTCAAAAGAAAGACCCCTaGTCAGAGAATGAGCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: TLKVVRARTQGKNLEAGIQKKDP*SENELQ Trigger: CTGGAGCTCATTCTCTGACCAGGGGTCTTTCTTTTG...AATTCCTGCCTCCAGGTTCTTGCCTTGAGTTCTTGCCCTGACTACTTTTAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR GCA 90 bp | CTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCACATAGATACACATaGAGGCAAAACATCAATACA | + |
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Preference number: 2 (lower is better) Translates to: LPEVLSSIPSNHMVAHNHPHRYT*RQNINT Trigger: TGTATTGATGTTTTGCCTGCATGTGTATCTATGTGG...ATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR GCA 72 bp | AGGGACACCCTTTCTCCCTCTTCTGAGGGACCCTGTTaGCATCTCCTGGCGACTTCGAGCACTGCTCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: RDTLSPSSEGPC*HLLATSSTALR Trigger: TCTGAGAGCAGTGCTCGAAGTCGCCAGGAGATGGCAACAGGGTCCCTCAGAAGAGGGAGAAAGGGTGTCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR CCA 72 bp | TTTCTCCCTCTTCTGAGGGACCCTGTTGCCATCTCCTaGCGACTTCGAGCACTGCTCTCAGAGCCCCAAAGC | + |
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Preference number: 3 (lower is better) Translates to: FLPLLRDPVAIS*RLRALLSEPQS Trigger: GCTTTGGGGCTCTGAGAGCAGTGCTCGAAGTCGCCAGGAGATGGCAACAGGGTCCCTCAGAAGAGGGAGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR CCA 72 bp | GCTGGAGAGATGGCTCAGGGTCCTTTAGAAGACAGCTaGCTGCTCTTCCAGAGGACCCAGGTTGCAGTCCTA | + |
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Preference number: 3 (lower is better) Translates to: AGEMAQGPLEDS*LLFQRTQVAVL Trigger: TAGGACTGCAACCTGGGTCCTCTGGAAGAGCAGCCAGCTGTCTTCTAAAGGACCCTGAGCCATCTCTCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR TCA 72 bp | CTGCTTTTCTTGAAGGGACACCCTTTCTCCCTCTTCTaGGGGACCCTGTTGCCATCTCCTGGCGACTTCGAG | + |
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Preference number: 3 (lower is better) Translates to: LLFLKGHPFSLF*GTLLPSPGDFE Trigger: CTCGAAGTCGCCAGGAGATGGCAACAGGGTCCCTCAGAAGAGGGAGAAAGGGTGTCCCTTCAAGAAAAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR GCA 72 bp | TCCAGTTCTAGATATGCGCTGATACCTGACCCCGAATaGAAGCTGAGTGCTAGGAGCTGGAGAGATGGCTCA | + |
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Preference number: 3 (lower is better) Translates to: SSSRYALIPDPE*KLSARSWRDGS Trigger: TGAGCCATCTCTCCAGCTCCTAGCACTCAGCTTGCATTCGGGGTCAGGTATCAGCGCATATCTAGAACTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR CCA 72 bp | TTCCAGAGGACCAGGGTTCAATTCCCATCACTCACGTaGCAGCTTACAACTGTCTGTAATTCCAGATCCAGG | + |
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Preference number: 3 (lower is better) Translates to: FQRTRVQFPSLT*QLTTVCNSRSR Trigger: CCTGGATCTGGAATTACAGACAGTTGTAAGCTGCCACGTGAGTGATGGGAATTGAACCCTGGTCCTCTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CAA 90 bp | CTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATGACCCAACTGATCTTTaGTCCTGTACAAGGTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: LPEVLSSIPSNHMVAHNHDPTDL*SCTRSR Trigger: TCTTGACCTTGTACAGGACAAAAGATCAGTTGGGTC...ATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CAA 90 bp | AAACAGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGTGCTGACTGCTCTTCTCGTATTCTGCCACTaGTCTCAAAAGAAAGACCCC | + |
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Preference number: 3 (lower is better) Translates to: KQIGAGEMAQWLRVLTALLVFCH*SQKKDP Trigger: GGGGTCTTTCTTTTGAGACAAGTGGCAGAATACGAG...AAGAGCAGTCAGCACTCTTAACCACTGAGCCATCTCTCCAGCCCCTATCTGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR TCA 72 bp | ATGGTGTTAAGGCACTTGCTACCAACCTTGACAACCTaGGTTCCATCCCTGGGACCCACAACTCCTAAAAGT | + |
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Preference number: 3 (lower is better) Translates to: MVLRHLLPTLTT*VPSLGPTTPKS Trigger: ACTTTTAGGAGTTGTGGGTCCCAGGGATGGAACTCAGGTTGTCAAGGTTGGTAGCAAGTGCCTTAACACCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR CCA 72 bp | AAAAATAAACAGATAGGGGCTGGAGAGATGGCTCAGTaGTTAAGAGTGCTGACTGCTCTTCCAGAGGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: KNKQIGAGEMAQ*LRVLTALPEVL Trigger: CAGGACCTCTGGAAGAGCAGTCAGCACTCTTAACCACTGAGCCATCTCTCCAGCCCCTATCTGTTTATTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CAA 90 bp | TTCCATCCCTGGGACCCACAACTCCTAAAAGTTGTCCTCTCTGACTGTCACAACGAAGCAACCAGCATATaGAAGGGAACTGATAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: FHPWDPQLLKVVLSDCHNEATSI*KGTDRK Trigger: TTTCCTATCAGTTCCCTTCAATATGCTGGTTGCTTC...GTTGTGACAGTCAGAGAGGACAACTTTTAGGAGTTGTGGGTCCCAGGGATGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR TCA 72 bp | ACCACATGGTGGCTCACAACCATTTGTAATGAGATCTaGTGCCCTCTTCTGGTGTGTCTGATGACAGCTACA | + |
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Preference number: 3 (lower is better) Translates to: TTWWLTTICNEI*CPLLVCLMTAT Trigger: TGTAGCTGTCATCAGACACACCAGAAGAGGGCATCAGATCTCATTACAAATGGTTGTGAGCCACCATGTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR-3UTR CAA 90 bp | GTCTACAGAGTAAGTTCCAGCATAGCAAAGGCTACACAGAGAAACCCTGACTTAGCTTTTCTGCTTTTCTaGAAGGGACACCCTTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: VYRVSSSIAKATQRNPDLAFLLF*KGHPFS Trigger: GGAGAAAGGGTGTCCCTTCAAGAAAAGCAGAAAAGC...TAAGTCAGGGTTTCTCTGTGTAGCCTTTGCTATGCTGGAACTTACTCTGTAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR TCA 72 bp | AGGCAGGCCGGCAAACAGACAAAAGACAACCCATCATaGCAGGTTTATGTCATCTTACATTTCCCAGATCTC | + |
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Preference number: 3 (lower is better) Translates to: RQAGKQTKDNPS*QVYVILHFPDL Trigger: GAGATCTGGGAAATGTAAGATGACATAAACCTGTCATGATGGGTTGTCTTTTGTCTGTTTGCCGGCCTGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR CCA 72 bp | TTCTATTGCTTTGATAAAACATCAGGATCAAAGGGCTaGAGAGATAGCTCGGTAGTAGCTGCTCTTCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: FYCFDKTSGSKG*RDSSVVAALPE Trigger: CTCTGGAAGAGCAGCTACTACCGAGCTATCTCTCCAGCCCTTTGATCCTGATGTTTTATCAAAGCAATAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR TCA 72 bp | AAGTTCCAGCATAGCAAAGGCTACACAGAGAAACCCTaGCTTAAAAATAAACAGATAGGGGCTGGAGAGATG | + |
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Preference number: 3 (lower is better) Translates to: KFQHSKGYTEKP*LKNKQIGAGEM Trigger: CATCTCTCCAGCCCCTATCTGTTTATTTTTAAGTCAGGGTTTCTCTGTGTAGCCTTTGCTATGCTGGAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR GCA 72 bp | AAAATAAATTACATATTAACAACGACACGCCGATCCTaGACTTACACTGAATCACTGATCCCAGATCCTATC | + |
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Preference number: 3 (lower is better) Translates to: KINYILTTTRRS*TYTESLIPDPI Trigger: GATAGGATCTGGGATCAGTGATTCAGTGTAAGTGCAGGATCGGCGTGTCGTTGTTAATATGTAATTTATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR GCA 72 bp | AGACTATTAAAGTTAGTGCCTGCCTTAGGTTTCTATTaGTTTGATAAAACATCAGGATCAAAGGGCTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: RLLKLVPALGFY*FDKTSGSKGWR Trigger: TCTCCAGCCCTTTGATCCTGATGTTTTATCAAAGCAATAGAAACCTAAGGCAGGCACTAACTTTAATAGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS-3UTR TCA 90 bp | AAAAATAAACAGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGTGCTGACTGCAATCCGAACACAATaGGCGCCGCGGAGCCGCGGT | + |
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Preference number: 4 (lower is better) Translates to: KNKQIGAGEMAQWLRVLTAIRTQ*APRSRG Trigger: ACCGCGGCTCCGCGGCGCTCATTGTGTTCGGATTGC...AGTCAGCACTCTTAACCACTGAGCCATCTCTCCAGCCCCTATCTGTTTATTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS-3UTR TCA 90 bp | AAAAATAAACAGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGTGCTGACTCATGGGTGCTGTGTCTaGGGCAACGCCTTCATCCTC | + |
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Preference number: 4 (lower is better) Translates to: KNKQIGAGEMAQWLRVLTHGCCV*GNAFIL Trigger: GAGGATGAAGGCGTTGCCTCAGACACAGCACCCATG...AGTCAGCACTCTTAACCACTGAGCCATCTCTCCAGCCCCTATCTGTTTATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| 3UTR CAA 72 bp | GGGCAAGAACTCAAGGCAAGAACCTGGAGGCAGGAATaGAAGCAGAACCTTACAACCAAAACAGATCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: GQELKARTWRQE*KQNLTTKTDLE Trigger: CTCCAGATCTGTTTTGGTTGTAAGGTTCTGCTTCAATTCCTGCCTCCAGGTTCTTGCCTTGAGTTCTTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS-3UTR TCA 90 bp | GTCTACAGAGTAAGTTCCAGCATAGCAAAGGCTACACAGAGAAACCCTGACTTAGATAGGAGCCAGGACTaGGATGTGGTAATCAGTAGG | + |
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Preference number: 4 (lower is better) Translates to: VYRVSSSIAKATQRNPDLDRSQD*DVVISR Trigger: CCTACTGATTACCACATCTCAGTCCTGGCTCCTATC...TAAGTCAGGGTTTCTCTGTGTAGCCTTTGCTATGCTGGAACTTACTCTGTAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS-3UTR TCA 90 bp | GATCTGGAGGGCTCACTCAGTAGTAGAAGTAGTAGAATTTCTGTTTTAAAATTACCAGGTAGCAGCAGATaGAGCAGGAACCCAACTAGA | + |
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Preference number: 4 (lower is better) Translates to: DLEGSLSSRSSRISVLKLPGSSR*SRNPTR Trigger: TCTAGTTGGGTTCCTGCTTCATCTGCTGCTACCTGG...TAATTTTAAAACAGAAATTCTACTACTTCTACTACTGAGTGAGCCCTCCAGATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS CCA 90 bp | GTTTGTCCTCGTCCGGGTGGCCGTCGGCCAGATCTCCGCTGCTCCTaGGCGGGCGGCGCGGAGCCGGGGTCCTCGCGGGATCAGGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: VCPRPGGRRPDLRCS*AGGAEPGSSRDQAA Trigger: CGCTGCCTGATCCCGCGAGGACCCCGGCTCCGCGCCGCCCGCCCAGGAGCAGCGGAGATCTGGCCGACGGCCACCCGGACGAGGACAAAC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS TCA 90 bp | CGGCGAGCACCACGAGCGGCGGCAGGGAGAGCAATCCGAACACAATaGGCGCCGCGGAGCCGCGGTCCGAGAGCAGCGCTCGGCACCGTG | + |
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Preference number: 5 (lower is better) Translates to: RRAPRAAAGRAIRTQ*APRSRGPRAALGTV Trigger: CACGGTGCCGAGCGCTGCTCTCGGACCGCGGCTCCGCGGCGCTCATTGTGTTCGGATTGCTCTCCCTGCCGCCGCTCGTGGTGCTCGCCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS GCA 90 bp | AGAGTTGTTTGTCCTCGTCCGGGTGGCCGTCGGCCAGATCTCCGCTaGTCCTGGGCGGGCGGCGCGGAGCCGGGGTCCTCGCGGGATCAG | + |
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Preference number: 5 (lower is better) Translates to: RVVCPRPGGRRPDLR*SWAGGAEPGSSRDQ Trigger: CTGATCCCGCGAGGACCCCGGCTCCGCGCCGCCCGCCCAGGAGCAGCGGAGATCTGGCCGACGGCCACCCGGACGAGGACAAACAACTCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS-3UTR CAA 90 bp | TTAATCTCAGCCTTTGGGAGGCAGAGGCAGGTAGATTTTTGTGAGTTCAAGACCGACCCAAGCACAGAGTaGTTTGTCCTCGTCCGGGTG | + |
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Preference number: 5 (lower is better) Translates to: LISAFGRQRQVDFCEFKTDPSTE*FVLVRV Trigger: CACCCGGACGAGGACAAACAACTCTGTGCTTGGGTC...GGTCTTGAACTCACAAAAATCTACCTGCCTCTGCCTCCCAAAGGCTGAGATTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS-3UTR CAA 90 bp | AAAAATAAACAGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGTGCTGACTGAGCCGGATGAACCCTaGAGTGACACAGGAATCCCA | + |
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Preference number: 5 (lower is better) Translates to: KNKQIGAGEMAQWLRVLTEPDEP*SDTGIP Trigger: TGGGATTCCTGTGTCACTCAAGGGTTCATCCGGCTC...AGTCAGCACTCTTAACCACTGAGCCATCTCTCCAGCCCCTATCTGTTTATTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS CCA 72 bp | CGTCCGGGTGGCCGTCGGCCAGATCTCCGCTGCTCCTaGGCGGGCGGCGCGGAGCCGGGGTCCTCGCGGGAT | + |
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Preference number: 6 (lower is better) Translates to: RPGGRRPDLRCS*AGGAEPGSSRD Trigger: ATCCCGCGAGGACCCCGGCTCCGCGCCGCCCGCCCAGGAGCAGCGGAGATCTGGCCGACGGCCACCCGGACG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS TCA 72 bp | CCACGAGCGGCGGCAGGGAGAGCAATCCGAACACAATaGGCGCCGCGGAGCCGCGGTCCGAGAGCAGCGCTC | + |
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Preference number: 6 (lower is better) Translates to: PRAAAGRAIRTQ*APRSRGPRAAL Trigger: GAGCGCTGCTCTCGGACCGCGGCTCCGCGGCGCTCATTGTGTTCGGATTGCTCTCCCTGCCGCCGCTCGTGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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| CDS CCA 72 bp | CAGACCCAAGCACAGAGTTGTTTGTCCTCGTCCGGGTaGCCGTCGGCCAGATCTCCGCTGCTCCTGGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: QTQAQSCLSSSG*PSARSPLLLGG Trigger: CCCGCCCAGGAGCAGCGGAGATCTGGCCGACGGCCACCCGGACGAGGACAAACAACTCTGTGCTTGGGTCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097742.3 |
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