Pregenerated sensors for TMEM88 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045377Ensembl transcript IDs: ENSMUST00000050140.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGAAGATGTGCAGGGTCCAGCCCAAACGTTCAGGAATCAAATGTaGATGACGTTTCTGGGACATGGGAATTTTCGCCAGCTCTACGTC | + |
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Preference number: 1 (lower is better) Translates to: KEDVQGPAQTFRNQM*MTFLGHGNFRQLYV Trigger: GACGTAGAGCTGGCGAAAATTCCCATGTCCCAGAAACGTCATTCACATTTGATTCCTGAACGTTTGGGCTGGACCCTGCACATCTTCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR GCA 90 bp | ATTTGTGTGAGCCCTGTCCCTCAGTCCTGTAAATTTTGGAGGAGCTaGACCAGCAAAGGAAGGCACAAGGTCCAGCTCTCTTATTTACAA | + |
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Preference number: 1 (lower is better) Translates to: ICVSPVPQSCKFWRS*TSKGRHKVQLSYLQ Trigger: TTGTAAATAAGAGAGCTGGACCTTGTGCCTTCCTTTGCTGGTGCAGCTCCTCCAAAATTTACAGGACTGAGGGACAGGGCTCACACAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR GCA 90 bp | AATGCGATAAGGAAAAGGCAGGATGCTGAGAGATGCTCTCTGATTTaGCCATTTGTAGTCTTGAGGATTCGTTTCCTACTCCTGAGCCCA | + |
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Preference number: 1 (lower is better) Translates to: NAIRKRQDAERCSLI*PFVVLRIRFLLLSP Trigger: TGGGCTCAGGAGTAGGAAACGAATCCTCAAGACTACAAATGGGCAAATCAGAGAGCATCTCTCAGCATCCTGCCTTTTCCTTATCGCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CCA 90 bp | AGCCCAAACGTTCAGGAATCAAATGTGAATGACGTTTCTGGGACATaGGAATTTTCGCCAGCTCTACGTCCACATTCAGCTGTTCCATCA | + |
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Preference number: 1 (lower is better) Translates to: SPNVQESNVNDVSGT*EFSPALRPHSAVPS Trigger: TGATGGAACAGCTGAATGTGGACGTAGAGCTGGCGAAAATTCCCATGTCCCAGAAACGTCATTCACATTTGATTCCTGAACGTTTGGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR TCA 90 bp | CCTAGGGTGGGCCCCTCCATCTTCCCTCCCACGCTCCTGCTTCAGTTTCTAGCGTTCGTTTCCTACTCCTaGGCCCAGTGCAGGAGCGAT | + |
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Preference number: 2 (lower is better) Translates to: PRVGPSIFPPTLLLQFLAFVSYS*AQCRSD Trigger: ATCGCTCCTGCACTGGGCTCAGGAGTAGGAAACGAA...CGCTAGAAACTGAAGCAGGAGCGTGGGAGGGAAGATGGAGGGGCCCACCCTAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CCA 90 bp | ACGCTCCTGCTTCAGTTTCTAGCGGGAAGCGGTGTCATCCTGCCCCGGAAGATCGTCCCCAAGGGGAGCTaGGTAGGCAGCCGAAACAAG | + |
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Preference number: 2 (lower is better) Translates to: TLLLQFLAGSGVILPRKIVPKGS*VGSRNK Trigger: CTTGTTTCGGCTGCCTACCCAGCTCCCCTTGGGGAC...GATCTTCCGGGGCAGGATGACACCGCTTCCCGCTAGAAACTGAAGCAGGAGCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CCA 90 bp | CAGGAGCTTCCTCAACCTGCCCCAATGCCTAGAAGAACCAAACCCTCCCTCAAGCAGCAGGCCCTAGGGTaGGCCCCTCCATCTTCCCTC | + |
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Preference number: 2 (lower is better) Translates to: QELPQPAPMPRRTKPSLKQQALG*APPSSL Trigger: GAGGGAAGATGGAGGGGCCCACCCTAGGGCCTGCTG...CTTGAGGGAGGGTTTGGTTCTTCTAGGCATTGGGGCAGGTTGAGGAAGCTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR TCA 90 bp | CCTAGGGTGGGCCCCTCCATCTTCCCTCCCACGCTCCTGCTTCAGTTTCTAGCGTCTCTCTTATTTGTGTaGGCCCTGTCCCTCAGTCCT | + |
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Preference number: 2 (lower is better) Translates to: PRVGPSIFPPTLLLQFLASLLFV*ALSLSP Trigger: AGGACTGAGGGACAGGGCTCACACAAATAAGAGAGA...CGCTAGAAACTGAAGCAGGAGCGTGGGAGGGAAGATGGAGGGGCCCACCCTAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CAA 90 bp | TCAGTTTCTAGCGGGAAGCGGTGTCATCCTGCCCCGGAAGATCCATaGTTTCCCACCCCGGCCTGGCAACACTCAGTTCCTTTAAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: SVSSGKRCHPAPEDP*FPTPAWQHSVPLSW Trigger: CCAGCTTAAAGGAACTGAGTGTTGCCAGGCCGGGGTGGGAAACAATGGATCTTCCGGGGCAGGATGACACCGCTTCCCGCTAGAAACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CCA 90 bp | CCTAGGGTGGGCCCCTCCATCTTCCCTCCCACGCTCCTGCTTCAGTTTCTAGCGGACGTTTCTGGGACATaGGAATTTTCGCCAGCTCTA | + |
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Preference number: 2 (lower is better) Translates to: PRVGPSIFPPTLLLQFLADVSGT*EFSPAL Trigger: TAGAGCTGGCGAAAATTCCCATGTCCCAGAAACGTC...CGCTAGAAACTGAAGCAGGAGCGTGGGAGGGAAGATGGAGGGGCCCACCCTAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CCA 90 bp | ACGCTCCTGCTTCAGTTTCTAGCGGGAAGCGGTGTCATCCTGCCCCGGAAGATCTTTCCCACCCCGGCCTaGCAACACTCAGTTCCTTTA | + |
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Preference number: 2 (lower is better) Translates to: TLLLQFLAGSGVILPRKIFPTPA*QHSVPL Trigger: TAAAGGAACTGAGTGTTGCCAGGCCGGGGTGGGAAA...GATCTTCCGGGGCAGGATGACACCGCTTCCCGCTAGAAACTGAAGCAGGAGCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CCA 90 bp | TCCATTGTTTCCCACCCCGGCCTGGCAACACTCAGTTCCTTTAAGCTGGGGTCACAGTCCTGTAAATTTTaGAGGAGCTGCACCAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: SIVSHPGLATLSSFKLGSQSCKF*RSCTSK Trigger: TTTGCTGGTGCAGCTCCTCCAAAATTTACAGGACTG...TGACCCCAGCTTAAAGGAACTGAGTGTTGCCAGGCCGGGGTGGGAAACAATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR TCA 90 bp | TTATTTACAATAGGGAAGGGAAAGAAGATGTGCAGGGTCCAGCCCAAACGTTCACTTGTTTCAAGTCCTTaGGAGACCAGGAGGGCAATC | + |
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Preference number: 2 (lower is better) Translates to: LFTIGKGKKMCRVQPKRSLVSSP*ETRRAI Trigger: GATTGCCCTCCTGGTCTCTCAAGGACTTGAAACAAG...TGAACGTTTGGGCTGGACCCTGCACATCTTCTTTCCCTTCCCTATTGTAAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR TCA 90 bp | ACAAGGTCCAGCTCTCTTATTTACAATAGGGAAGGGAAAGAAGATGTGCAGGGTGGAATCAAATGTGAATaGCGTTTCTGGGACATGGGA | + |
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Preference number: 2 (lower is better) Translates to: TRSSSLIYNREGKEDVQGGIKCE*RFWDMG Trigger: TCCCATGTCCCAGAAACGTCATTCACATTTGATTCC...ACCCTGCACATCTTCTTTCCCTTCCCTATTGTAAATAAGAGAGCTGGACCTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR TCA 90 bp | GAAGAATGGACTAATGCGATAAGGAAAAGGCAGGATGCTGAGAGATGCTCTCTGTTCAGGAATCAAATGTaGATGACGTTTCTGGGACAT | + |
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Preference number: 2 (lower is better) Translates to: EEWTNAIRKRQDAERCSLFRNQM*MTFLGH Trigger: ATGTCCCAGAAACGTCATTCACATTTGATTCCTGAA...CAGAGAGCATCTCTCAGCATCCTGCCTTTTCCTTATCGCATTAGTCCATTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CAA 90 bp | GAGCTTAAGGCAGCAGGCCCTAGGGTGGGCCCCTCCATCTTCCCTCCCACGCTCGCCCCGGAAGATCCATaGTTTCCCACCCCGGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: ELKAAGPRVGPSIFPPTLAPEDP*FPTPAW Trigger: CCAGGCCGGGGTGGGAAACAATGGATCTTCCGGGGC...GAGCGTGGGAGGGAAGATGGAGGGGCCCACCCTAGGGCCTGCTGCCTTAAGCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CCA 72 bp | GGCCGCGGTAAGGAACCGGCTTGGGCAGTACACCCCTaGGCTTGTTTCAAGTCCTTGAGAGACCAGGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: GRGKEPAWAVHP*ACFKSLRDQEG Trigger: GCCCTCCTGGTCTCTCAAGGACTTGAAACAAGCCCAGGGGTGTACTGCCCAAGCCGGTTCCTTACCGCGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CAA 90 bp | CCCACGCTCCTGCTTCAGTTTCTAGCGGGAAGCGGTGTCATCCTGCCCCGGAAGTGGCTTCTCTCTTATTaGTGTGAGCCCTGTCCCTCA | + |
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Preference number: 3 (lower is better) Translates to: PTLLLQFLAGSGVILPRKWLLSY*CEPCPS Trigger: TGAGGGACAGGGCTCACACAAATAAGAGAGAAGCCA...CTTCCGGGGCAGGATGACACCGCTTCCCGCTAGAAACTGAAGCAGGAGCGTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CCA 72 bp | TTTCTGCGGGCGAACCCCGTGTGCTGGGTCTGGCCATaGTACCAGGACACCACATCGTTTCTATTGAAGTCC | + |
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Preference number: 3 (lower is better) Translates to: FLRANPVCWVWP*YQDTTSFLLKS Trigger: GGACTTCAATAGAAACGATGTGGTGTCCTGGTACCATGGCCAGACCCAGCACACGGGGTTCGCCCGCAGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CAA 90 bp | GGGCGAACCCCGTGTGCTGGGTCTGGCCATGGTACCAGGACACCACATCGTTTCTGCCCATTTGTAGTCTaGAGGATTCGTTTCCTACTC | + |
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Preference number: 3 (lower is better) Translates to: GRTPCAGSGHGTRTPHRFCPFVV*RIRFLL Trigger: GAGTAGGAAACGAATCCTCAAGACTACAAATGGGCA...GAAACGATGTGGTGTCCTGGTACCATGGCCAGACCCAGCACACGGGGTTCGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CAA 90 bp | CCCGTGTGCTGGGTCTGGCCATGGTACCAGGACACCACATCGTTTCTATTGAAGAATGGGGAAGTGACTTaGGGGTCAGGGCCAGACAAC | + |
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Preference number: 3 (lower is better) Translates to: PVCWVWPWYQDTTSFLLKNGEVT*GSGPDN Trigger: GTTGTCTGGCCCTGACCCCAAAGTCACTTCCCCATT...CTTCAATAGAAACGATGTGGTGTCCTGGTACCATGGCCAGACCCAGCACACGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR GCA 72 bp | AGCCCTGTCCCTCAGTCCTGTAAATTTTGGAGGAGCTaGACCAGCAAAGGAAGGCACAAGGTCCAGCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: SPVPQSCKFWRS*TSKGRHKVQLS Trigger: AGAGAGCTGGACCTTGTGCCTTCCTTTGCTGGTGCAGCTCCTCCAAAATTTACAGGACTGAGGGACAGGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CCA 72 bp | ATTCATTTTCTGCGGGCGAACCCCGTGTGCTGGGTCTaGCCATGGTACCAGGACACCACATCGTTTCTATTG | + |
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Preference number: 3 (lower is better) Translates to: IHFLRANPVCWV*PWYQDTTSFLL Trigger: CAATAGAAACGATGTGGTGTCCTGGTACCATGGCCAGACCCAGCACACGGGGTTCGCCCGCAGAAAATGAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CCA 72 bp | ATTTGTGTGAGCCCTGTCCCTCAGTCCTGTAAATTTTaGAGGAGCTGCACCAGCAAAGGAAGGCACAAGGTC | + |
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Preference number: 3 (lower is better) Translates to: ICVSPVPQSCKF*RSCTSKGRHKV Trigger: GACCTTGTGCCTTCCTTTGCTGGTGCAGCTCCTCCAAAATTTACAGGACTGAGGGACAGGGCTCACACAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CCA 72 bp | CAGGGCCAGACAACTCTGGGGTCTGATCAGGAAGAATaGACTAATGCGATAAGGAAAAGGCAGGATGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: QGQTTLGSDQEE*TNAIRKRQDAE Trigger: CTCAGCATCCTGCCTTTTCCTTATCGCATTAGTCCATTCTTCCTGATCAGACCCCAGAGTTGTCTGGCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR TCA 72 bp | GTGCAGGGTCCAGCCCAAACGTTCAGGAATCAAATGTaGATGACGTTTCTGGGACATGGGAATTTTCGCCAG | + |
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Preference number: 3 (lower is better) Translates to: VQGPAQTFRNQM*MTFLGHGNFRQ Trigger: CTGGCGAAAATTCCCATGTCCCAGAAACGTCATTCACATTTGATTCCTGAACGTTTGGGCTGGACCCTGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR-3UTR CAA 90 bp | CTTATTTACAATAGGGAAGGGAAAGAAGATGTGCAGGGTCCAGCCCAAACGTTCGCTTGTTTCAAGTCCTaGAGAGACCAGGAGGGCAAT | + |
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Preference number: 3 (lower is better) Translates to: LIYNREGKEDVQGPAQTFACFKS*RDQEGN Trigger: ATTGCCCTCCTGGTCTCTCAAGGACTTGAAACAAGC...GAACGTTTGGGCTGGACCCTGCACATCTTCTTTCCCTTCCCTATTGTAAATAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR GCA 72 bp | AGGAAAAGGCAGGATGCTGAGAGATGCTCTCTGATTTaGCCATTTGTAGTCTTGAGGATTCGTTTCCTACTC | + |
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Preference number: 3 (lower is better) Translates to: RKRQDAERCSLI*PFVVLRIRFLL Trigger: GAGTAGGAAACGAATCCTCAAGACTACAAATGGGCAAATCAGAGAGCATCTCTCAGCATCCTGCCTTTTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CCA 72 bp | GTTCAGGAATCAAATGTGAATGACGTTTCTGGGACATaGGAATTTTCGCCAGCTCTACGTCCACATTCAGCT | + |
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Preference number: 3 (lower is better) Translates to: VQESNVNDVSGT*EFSPALRPHSA Trigger: AGCTGAATGTGGACGTAGAGCTGGCGAAAATTCCCATGTCCCAGAAACGTCATTCACATTTGATTCCTGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR GCA 72 bp | GCTCTCTTATTTACAATAGGGAAGGGAAAGAAGATGTaGAGGGTCCAGCCCAAACGTTCAGGAATCAAATGT | + |
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Preference number: 3 (lower is better) Translates to: ALLFTIGKGKKM*RVQPKRSGIKC Trigger: ACATTTGATTCCTGAACGTTTGGGCTGGACCCTGCACATCTTCTTTCCCTTCCCTATTGTAAATAAGAGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| 3UTR CAA 72 bp | AGCGGGAAGCGGTGTCATCCTGCCCCGGAAGATCCATaGTTTCCCACCCCGGCCTGGCAACACTCAGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: SGKRCHPAPEDP*FPTPAWQHSVP Trigger: AGGAACTGAGTGTTGCCAGGCCGGGGTGGGAAACAATGGATCTTCCGGGGCAGGATGACACCGCTTCCCGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS-3UTR GCA 90 bp | CCCACGCTCCTGCTTCAGTTTCTAGCGGGAAGCGGTGTCATCCTGCCCCGGAAGGGTCCCCAGCACCAGTaGCAGCAAGAGGAGATTGAA | + |
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Preference number: 4 (lower is better) Translates to: PTLLLQFLAGSGVILPRKGPQHQ*QQEEIE Trigger: TTCAATCTCCTCTTGCTGGCACTGGTGCTGGGGACC...CTTCCGGGGCAGGATGACACCGCTTCCCGCTAGAAACTGAAGCAGGAGCGTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS-3UTR TCA 90 bp | CCCACGCTCCTGCTTCAGTTTCTAGCGGGAAGCGGTGTCATCCTGCCCCGGAAGCCAGCAAGAGGAGATTaGAAACAGCCACCAGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: PTLLLQFLAGSGVILPRKPARGD*KQPPAD Trigger: ATCTGCTGGTGGCTGTTTTCAATCTCCTCTTGCTGG...CTTCCGGGGCAGGATGACACCGCTTCCCGCTAGAAACTGAAGCAGGAGCGTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS-3UTR CCA 90 bp | AGTACACCCCTGGGCTTGTTTCAAGTCCTTGAGAGACCAGGAGGGCAATCGACACAGCAGGTAGCAAGATaGTCCCCAGCACCAGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: STPLGLFQVLERPGGQSTQQVAR*SPAPVP Trigger: TGGCACTGGTGCTGGGGACCATCTTGCTACCTGCTG...TGTCGATTGCCCTCCTGGTCTCTCAAGGACTTGAAACAAGCCCAGGGGTGTACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS-3UTR GCA 90 bp | CAGCAAAGGAAGGCACAAGGTCCAGCTCTCTTATTTACAATAGGGAAGGGAAAGCCTGGGTCCCGCAGATaGGAGGTGCAAAGGGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: QQRKAQGPALLFTIGKGKPGSRR*EVQRGA Trigger: GGCACCCCTTTGCACCTCGCATCTGCGGGACCCAGG...CTTTCCCTTCCCTATTGTAAATAAGAGAGCTGGACCTTGTGCCTTCCTTTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS-3UTR CCA 90 bp | AGGAGCTTCCTCAACCTGCCCCAATGCCTAGAAGAACCAAACCCTCCCTCAAGTCGCAGAAACTGGGAGTaGCAGAGAAAGCCGAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: RSFLNLPQCLEEPNPPSSRRNWE*QRKPKP Trigger: AGGCTTCGGCTTTCTCTGCCACTCCCAGTTTCTGCG...ACTTGAGGGAGGGTTTGGTTCTTCTAGGCATTGGGGCAGGTTGAGGAAGCTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS-3UTR GCA 90 bp | ACAAGGTCCAGCTCTCTTATTTACAATAGGGAAGGGAAAGAAGATGTGCAGGGTCCCGCAGATGCGAGGTaGAAAGGGGTGCCTGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: TRSSSLIYNREGKEDVQGPADAR*KGVPES Trigger: GCTCTCAGGCACCCCTTTGCACCTCGCATCTGCGGG...ACCCTGCACATCTTCTTTCCCTTCCCTATTGTAAATAAGAGAGCTGGACCTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS-3UTR TCA 90 bp | GAAGAATGGACTAATGCGATAAGGAAAAGGCAGGATGCTGAGAGATGCTCTCTGGCCACCAGCAGATTCTaGGCCGTTACTAGCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: EEWTNAIRKRQDAERCSLATSRF*AVTSTA Trigger: TGCAGTGCTAGTAACGGCTCAGAATCTGCTGGTGGC...CAGAGAGCATCTCTCAGCATCCTGCCTTTTCCTTATCGCATTAGTCCATTCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS GCA 90 bp | CAGACCGAGAACCTGGTGAGACTGGGATTTGCTTCGGCTGTGGGATaGGCCGGCGCCTGTAGAGGGCTCGGCTGTAGGGCACGAGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: QTENLVRLGFASAVG*AGACRGLGCRARGS Trigger: ACTGCCTCGTGCCCTACAGCCGAGCCCTCTACAGGCGCCGGCGCATCCCACAGCCGAAGCAAATCCCAGTCTCACCAGGTTCTCGGTCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS TCA 90 bp | TCAGACCCAGACCTTTCCCGGTGTGGGAACAGACCGAGAACCTGGTaGGACTGGGATTTGCTTCGGCTGTGGGATGCGCCGGCGCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: SDPDLSRCGNRPRTW*DWDLLRLWDAPAPV Trigger: TACAGGCGCCGGCGCATCCCACAGCCGAAGCAAATCCCAGTCTCACCAGGTTCTCGGTCTGTTCCCACACCGGGAAAGGTCTGGGTCTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS TCA 90 bp | ACCAGTGCCAGCAAGAGGAGATTGAAAACAGCCACCAGCAGATTCTaGGCCGTTACTAGCACTGCACAGGCCCAGCAATCTAGGGGATCC | + |
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Preference number: 5 (lower is better) Translates to: TSASKRRLKTATSRF*AVTSTAQAQQSRGS Trigger: GGATCCCCTAGATTGCTGGGCCTGTGCAGTGCTAGTAACGGCTCAGAATCTGCTGGTGGCTGTTTTCAATCTCCTCTTGCTGGCACTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS TCA 90 bp | CAGGTAGCAAGATGGTCCCCAGCACCAGTGCCAGCAAGAGGAGATTaGAAACAGCCACCAGCAGATTCTGAGCCGTTACTAGCACTGCAC | + |
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Preference number: 5 (lower is better) Translates to: QVARWSPAPVPARGD*KQPPADSEPLLALH Trigger: GTGCAGTGCTAGTAACGGCTCAGAATCTGCTGGTGGCTGTTTTCAATCTCCTCTTGCTGGCACTGGTGCTGGGGACCATCTTGCTACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS GCA 72 bp | AACCTGGTGAGACTGGGATTTGCTTCGGCTGTGGGATaGGCCGGCGCCTGTAGAGGGCTCGGCTGTAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: NLVRLGFASAVG*AGACRGLGCRA Trigger: TGCCCTACAGCCGAGCCCTCTACAGGCGCCGGCGCATCCCACAGCCGAAGCAAATCCCAGTCTCACCAGGTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS GCA 72 bp | GAAGCCTGGGTCCCGCAGATGCGAGGTGCAAAGGGGTaGCTGAGAGCGCAGAAACTGGGAGTGGCAGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: EAWVPQMRGAKG*LRAQKLGVAEK Trigger: TTTCTCTGCCACTCCCAGTTTCTGCGCTCTCAGGCACCCCTTTGCACCTCGCATCTGCGGGACCCAGGCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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| CDS TCA 72 bp | AGATGGTCCCCAGCACCAGTGCCAGCAAGAGGAGATTaGAAACAGCCACCAGCAGATTCTGAGCCGTTACTA | + |
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Preference number: 6 (lower is better) Translates to: RWSPAPVPARGD*KQPPADSEPLL Trigger: TAGTAACGGCTCAGAATCTGCTGGTGGCTGTTTTCAATCTCCTCTTGCTGGCACTGGTGCTGGGGACCATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050140.6 |
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