Pregenerated sensors for TMEM65 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062373Ensembl transcript IDs: ENSMUST00000072113.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGCACGATGCCGTCCGCTGCAGCTCTAACGCTGATAGAGAACAGCTaGTATGAGAAAGAGGGCAGTCCAGTTTCAGCTGGCATCAGAGTC | + |
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Preference number: 1 (lower is better) Translates to: RTMPSAAALTLIENS*YEKEGSPVSAGIRV Trigger: GACTCTGATGCCAGCTGAAACTGGACTGCCCTCTTTCTCATAGCAGCTGTTCTCTATCAGCGTTAGAGCTGCAGCGGACGGCATCGTGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR GCA 90 bp | AAGGGAAGGAAAGAGCACTCACATGTCTACACAGAAAGTAAAATGTaGATTCTAGCCTTTCACCTGGAACCTTGTGCTTGCTGTCGTGGG | + |
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Preference number: 1 (lower is better) Translates to: KGRKEHSHVYTESKM*ILAFHLEPCACCRG Trigger: CCCACGACAGCAAGCACAAGGTTCCAGGTGAAAGGCTAGAATGCACATTTTACTTTCTGTGTAGACATGTGAGTGCTCTTTCCTTCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR CCA 90 bp | TTTACATGCATCAACAAGTCCATAAATCATAATACACAAACACCATaGATTCTGAACAGACAGGACTACAGCAGCGCACGATGCCGTCCG | + |
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Preference number: 1 (lower is better) Translates to: FTCINKSINHNTQTP*ILNRQDYSSARCRP Trigger: CGGACGGCATCGTGCGCTGCTGTAGTCCTGTCTGTTCAGAATCCATGGTGTTTGTGTATTATGATTTATGGACTTGTTGATGCATGTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR-3UTR TCA 90 bp | ACCTTCCCGGCAGCACTGGAACTTTATCATCCACCCCACACAACCTCCTTGAAACCAGAATTCACTGTGTaGTTGTTCAAAGTTGGGAAA | + |
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Preference number: 2 (lower is better) Translates to: TFPAALELYHPPHTTSLKPEFTV*LFKVGK Trigger: TTTCCCAACTTTGAACAATCACACAGTGAATTCTGG...TTTCAAGGAGGTTGTGTGGGGTGGATGATAAAGTTCCAGTGCTGCCGGGAAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR-3UTR TCA 90 bp | ACACACACAGCTTTCACCAACTGTGTGCATAACCACCACGAAAGAAGAAAACCACATGTCGACTGCCATTaGTGGAAAGCATCAACAATT | + |
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Preference number: 2 (lower is better) Translates to: THTAFTNCVHNHHERRKPHVDCH*WKASTI Trigger: AATTGTTGATGCTTTCCATCAATGGCAGTCGACATG...TGGTTTTCTTCTTTCGTGGTGGTTATGCACACAGTTGGTGAAAGCTGTGTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR CAA 90 bp | CACGAAAGAAGAAAACCATCCACCAAAGGGAGAAAGGACCTCTCCTaGTGTTACAGACTAGGTAGCAAACTAGAAAATACATGTTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: HERRKPSTKGRKDLS*CYRLGSKLENTCCF Trigger: GAAACAACATGTATTTTCTAGTTTGCTACCTAGTCTGTAACACAAGGAGAGGTCCTTTCTCCCTTTGGTGGATGGTTTTCTTCTTTCGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR GCA 72 bp | CCGTCCGCTGCAGCTCTAACGCTGATAGAGAACAGCTaGTATGAGAAAGAGGGCAGTCCAGTTTCAGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: PSAAALTLIENS*YEKEGSPVSAG Trigger: GCCAGCTGAAACTGGACTGCCCTCTTTCTCATAGCAGCTGTTCTCTATCAGCGTTAGAGCTGCAGCGGACGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR TCA 72 bp | CGCTGCAGCTCTAACGCTGATAGAGAACAGCTGCTATaGGAAAGAGGGCAGTCCAGTTTCAGCTGGCATCAG | + |
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Preference number: 3 (lower is better) Translates to: RCSSNADREQLL*ERGQSSFSWHQ Trigger: CTGATGCCAGCTGAAACTGGACTGCCCTCTTTCTCATAGCAGCTGTTCTCTATCAGCGTTAGAGCTGCAGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR TCA 72 bp | GCAGTCCAGTTTCAGCTGGCATCAGAGTCTCTGTGGTaGAAAACGCTCAACACGGGTGGTATGGAGTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: AVQFQLASESLW*KTLNTGGMESL Trigger: TAAGGACTCCATACCACCCGTGTTGAGCGTTTTTCACCACAGAGACTCTGATGCCAGCTGAAACTGGACTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR GCA 72 bp | GCTGTCGTGGGACATGTGAGCAAAGATGAATCTGTCTaGCACCTCAAGTCATGTGATGCTAGCCTGACCAAA | + |
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Preference number: 3 (lower is better) Translates to: AVVGHVSKDESV*HLKSCDASLTK Trigger: TTTGGTCAGGCTAGCATCACATGACTTGAGGTGGCAGACAGATTCATCTTTGCTCACATGTCCCACGACAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR TCA 72 bp | ATGGGATATTTTGGCTCCTTCCGTTCCATGAGACAATaGCAACACATCAGGGGAAACTCTTTCCAAAGCCAT | + |
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Preference number: 3 (lower is better) Translates to: MGYFGSFRSMRQ*QHIRGNSFQSH Trigger: ATGGCTTTGGAAAGAGTTTCCCCTGATGTGTTGTCATTGTCTCATGGAACGGAAGGAGCCAAAATATCCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR GCA 72 bp | AAAGAGCACTCACATGTCTACACAGAAAGTAAAATGTaGATTCTAGCCTTTCACCTGGAACCTTGTGCTTGC | + |
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Preference number: 3 (lower is better) Translates to: KEHSHVYTESKM*ILAFHLEPCAC Trigger: GCAAGCACAAGGTTCCAGGTGAAAGGCTAGAATGCACATTTTACTTTCTGTGTAGACATGTGAGTGCTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR GCA 72 bp | AATCCCTATTTTAAGAGACCGGACATATCCAAGCACTaGCTTTCTCTCACAAACCAGAATTCACTGTGTGAT | + |
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Preference number: 3 (lower is better) Translates to: NPYFKRPDISKH*LSLTNQNSLCD Trigger: ATCACACAGTGAATTCTGGTTTGTGAGAGAAAGGCAGTGCTTGGATATGTCCGGTCTCTTAAAATAGGGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR TCA 72 bp | AGTCAGAACAGTACAGTACAGTACAGTATCAGTGACTaGAAGTTAAATAATATCTTGATACACAGAGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: SQNSTVQYSISD*KLNNILIHREG Trigger: TCCTTCTCTGTGTATCAAGATATTATTTAACTTTCAGTCACTGATACTGTACTGTACTGTACTGTTCTGACT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CCA 90 bp | ACCTTCCCGGCAGCACTGGAACTTTATCATCCACCCCACACAACCTCCTTGAAATGTTCAGCGCCTCCATaGGCTCCTTCTTGGGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: TFPAALELYHPPHTTSLKCSAPP*APSWGV Trigger: CACACCCCAAGAAGGAGCCCATGGAGGCGCTGAACA...TTTCAAGGAGGTTGTGTGGGGTGGATGATAAAGTTCCAGTGCTGCCGGGAAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR TCA 90 bp | ACACACACAGCTTTCACCAACTGTGTGCATAACCACCACGAAAGAAGAAAACCAAGTGCAGGCTGTAGATaGAGTCGCGCGCGCCCTGCG | + |
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Preference number: 4 (lower is better) Translates to: THTAFTNCVHNHHERRKPSAGCR*SRARPA Trigger: CGCAGGGCGCGCGCGACTTCATCTACAGCCTGCACT...TGGTTTTCTTCTTTCGTGGTGGTTATGCACACAGTTGGTGAAAGCTGTGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR TCA 90 bp | CACCACAATACAGCACTGACAAACAAAGACAGGACATGCCACCGATACACAAGGAGCGGTGCAGCTCTTTaGGCAAGCAGCTCCTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: HHNTALTNKDRTCHRYTRSGAAL*ASSSSP Trigger: CGGAGAGGAGCTGCTTGCTCAAAGAGCTGCACCGCT...CCTTGTGTATCGGTGGCATGTCCTGTCTTTGTTTGTCAGTGCTGTATTGTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR GCA 90 bp | ACAGAGAAGGAAAAGATGACATGTCGACTGCCATTGATGGAAAGCATCAACAATAAGTCGCGCGCGCCCTaGGCCGTGTTCAGCGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TEKEKMTCRLPLMESINNKSRAP*AVFSAS Trigger: GGAGGCGCTGAACACGGCGCAGGGCGCGCGCGACTT...ATTGTTGATGCTTTCCATCAATGGCAGTCGACATGTCATCTTTTCCTTCTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CCA 90 bp | ACCTTCCCGGCAGCACTGGAACTTTATCATCCACCCCACACAACCTCCTTGAAACTTGTGCGATGGCAATaGACTCGAAGCGGTGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: TFPAALELYHPPHTTSLKLVRWQ*TRSGAA Trigger: AGCTGCACCGCTTCGAGTCCATTGCCATCGCACAAG...TTTCAAGGAGGTTGTGTGGGGTGGATGATAAAGTTCCAGTGCTGCCGGGAAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CCA 90 bp | GCTACTGTCTTCACTGCTAACTGTGGGGACAGTATAGTTAATGATGAGGTACATCCATGGGCTCCTTCTTaGGGTGTGTGCCCAGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: ATVFTANCGDSIVNDEVHPWAPS*GVCPEA Trigger: GGCTTCTGGGCACACACCCCAAGAAGGAGCCCATGG...ATGTACCTCATCATTAACTATACTGTCCCCACAGTTAGCAGTGAAGACAGTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CCA 90 bp | ACCTTCCCGGCAGCACTGGAACTTTATCATCCACCCCACACAACCTCCTTGAAAATTTTTCTTGTGCGATaGCAATGGACTCGAAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: TFPAALELYHPPHTTSLKIFLVR*QWTRSG Trigger: ACCGCTTCGAGTCCATTGCCATCGCACAAGAAAAAT...TTTCAAGGAGGTTGTGTGGGGTGGATGATAAAGTTCCAGTGCTGCCGGGAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR GCA 90 bp | ACACACACAGCTTTCACCAACTGTGTGCATAACCACCACGAAAGAAGAAAACCAATGGACTCGAAGCGGTaGAGCTCTTTGAGCAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: THTAFTNCVHNHHERRKPMDSKR*SSLSKQ Trigger: CTGCTTGCTCAAAGAGCTGCACCGCTTCGAGTCCAT...TGGTTTTCTTCTTTCGTGGTGGTTATGCACACAGTTGGTGAAAGCTGTGTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR GCA 90 bp | GCTACTGTCTTCACTGCTAACTGTGGGGACAGTATAGTTAATGATGAGGTACATGGAACATTCCTAGAATaGAGCCGATCGTCACCCCAA | + |
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Preference number: 4 (lower is better) Translates to: ATVFTANCGDSIVNDEVHGTFLE*SRSSPQ Trigger: TTGGGGTGACGATCGGCTGCATTCTAGGAATGTTCC...ATGTACCTCATCATTAACTATACTGTCCCCACAGTTAGCAGTGAAGACAGTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CCA 90 bp | ACAGAGAAGGAAAAGATGACATGTCGACTGCCATTGATGGAAAGCATCAACAATTCAGCTGTCCTGGAGTaGGTGGTAGAGCTTCCAATT | + |
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Preference number: 4 (lower is better) Translates to: TEKEKMTCRLPLMESINNSAVLE*VVELPI Trigger: AATTGGAAGCTCTACCACCCACTCCAGGACAGCTGA...ATTGTTGATGCTTTCCATCAATGGCAGTCGACATGTCATCTTTTCCTTCTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR GCA 90 bp | GCTACTGTCTTCACTGCTAACTGTGGGGACAGTATAGTTAATGATGAGGTACATTGCCACATGTCAACTTaGTTTGGTGTAAGATCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ATVFTANCGDSIVNDEVHCHMST*FGVRSG Trigger: TCCTGATCTTACACCAAAGCAAGTTGACATGTGGCA...ATGTACCTCATCATTAACTATACTGTCCCCACAGTTAGCAGTGAAGACAGTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR GCA 90 bp | GCTACTGTCTTCACTGCTAACTGTGGGGACAGTATAGTTAATGATGAGGTACATGTGCTAACACGTGTTTaGCACATGTCAACTTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: ATVFTANCGDSIVNDEVHVLTRV*HMSTCF Trigger: AAAGCAAGTTGACATGTGGCAAACACGTGTTAGCAC...ATGTACCTCATCATTAACTATACTGTCCCCACAGTTAGCAGTGAAGACAGTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR CAA 72 bp | AGAAAACCATCCACCAAAGGGAGAAAGGACCTCTCCTaGTGTTACAGACTAGGTAGCAAACTAGAAAATACA | + |
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Preference number: 4 (lower is better) Translates to: RKPSTKGRKDLS*CYRLGSKLENT Trigger: TGTATTTTCTAGTTTGCTACCTAGTCTGTAACACAAGGAGAGGTCCTTTCTCCCTTTGGTGGATGGTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CCA 90 bp | ACACACACAGCTTTCACCAACTGTGTGCATAACCACCACGAAAGAAGAAAACCAAAAGGTATCGCATTGTaGAAGAATACATATCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: THTAFTNCVHNHHERRKPKGIAL*KNTYLS Trigger: GCTGAGATATGTATTCTTCCACAATGCGATACCTTT...TGGTTTTCTTCTTTCGTGGTGGTTATGCACACAGTTGGTGAAAGCTGTGTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR GCA 90 bp | CTGAGTTATTTGATCCCGTATCTATACACTGCTACTGTCTTCACTGCTAACTGTTTCAATTTGGGTTCCTaGAACAATCATAATTGCGTT | + |
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Preference number: 4 (lower is better) Translates to: LSYLIPYLYTATVFTANCFNLGS*NNHNCV Trigger: AACGCAATTATGATTGTTGCAGGAACCCAAATTGAA...ACAGTTAGCAGTGAAGACAGTAGCAGTGTATAGATACGGGATCAAATAACTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| 3UTR CAA 72 bp | TACACAGAGAAGGAAAAGATGACATGTCGACTGCCATaGATGGAAAGCATCAACAATTTACATAAAATGATA | + |
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Preference number: 4 (lower is better) Translates to: YTEKEKMTCRLP*MESINNLHKMI Trigger: TATCATTTTATGTAAATTGTTGATGCTTTCCATCAATGGCAGTCGACATGTCATCTTTTCCTTCTCTGTGTA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS CCA 90 bp | CGCGCGCGCCCTGCGCCGTGTTCAGCGCCTCCATGGGCTCCTTCTTaGGGTGTGTGCCCAGAAGCCGGGGACCGCCGGGAACCCCGAGCG | + |
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Preference number: 5 (lower is better) Translates to: RARPAPCSAPPWAPS*GVCPEAGDRREPRA Trigger: CGCTCGGGGTTCCCGGCGGTCCCCGGCTTCTGGGCACACACCCCAAGAAGGAGCCCATGGAGGCGCTGAACACGGCGCAGGGCGCGCGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS GCA 90 bp | GCCTTGCCCAAATGTGTGCTAACACGTGTTTGCCACATGTCAACTTaGTTTGGTGTAAGATCAGGAATTGAGAGGCCTAGCCTGGACGCC | + |
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Preference number: 5 (lower is better) Translates to: ALPKCVLTRVCHMST*FGVRSGIERPSLDA Trigger: GGCGTCCAGGCTAGGCCTCTCAATTCCTGATCTTACACCAAAGCAAGTTGACATGTGGCAAACACGTGTTAGCACACATTTGGGCAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CAA 90 bp | CACCACAATACAGCACTGACAAACAAAGACAGGACATGCCACCGATACACAAGGTGTGCTAACACGTGTTaGCCACATGTCAACTTGCTT | + |
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Preference number: 5 (lower is better) Translates to: HHNTALTNKDRTCHRYTRCANTC*PHVNLL Trigger: AAGCAAGTTGACATGTGGCAAACACGTGTTAGCACA...CCTTGTGTATCGGTGGCATGTCCTGTCTTTGTTTGTCAGTGCTGTATTGTGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS CCA 90 bp | AAGGTATCGCATTGTGGAAGAATACATATCTCAGCTGTCCTGGAGTaGGTGGTAGAGCTTCCAATTTTTCTTGTGCGATGGCAATGGACT | + |
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Preference number: 5 (lower is better) Translates to: KVSHCGRIHISAVLE*VVELPIFLVRWQWT Trigger: AGTCCATTGCCATCGCACAAGAAAAATTGGAAGCTCTACCACCCACTCCAGGACAGCTGAGATATGTATTCTTCCACAATGCGATACCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CAA 90 bp | ATTAAGCATGGGATATTTTGGCTCCTTCCGTTCCATGAGACAATGACAACACATGTCACCCCAACAGCCTaGCCCAAATGTGTGCTAACA | + |
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Preference number: 5 (lower is better) Translates to: IKHGIFWLLPFHETMTTHVTPTA*PKCVLT Trigger: TGTTAGCACACATTTGGGCAAGGCTGTTGGGGTGAC...ATGTGTTGTCATTGTCTCATGGAACGGAAGGAGCCAAAATATCCCATGCTTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CAA 90 bp | ATTAAGCATGGGATATTTTGGCTCCTTCCGTTCCATGAGACAATGACAACACATAGCTTCCAATTTTTCTaGTGCGATGGCAATGGACTC | + |
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Preference number: 5 (lower is better) Translates to: IKHGIFWLLPFHETMTTHSFQFF*CDGNGL Trigger: GAGTCCATTGCCATCGCACAAGAAAAATTGGAAGCT...ATGTGTTGTCATTGTCTCATGGAACGGAAGGAGCCAAAATATCCCATGCTTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CAA 90 bp | CTGAGTTATTTGATCCCGTATCTATACACTGCTACTGTCTTCACTGCTAACTGTTTGCCACATGTCAACTaGCTTTGGTGTAAGATCAGG | + |
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Preference number: 5 (lower is better) Translates to: LSYLIPYLYTATVFTANCLPHVN*LWCKIR Trigger: CCTGATCTTACACCAAAGCAAGTTGACATGTGGCAA...ACAGTTAGCAGTGAAGACAGTAGCAGTGTATAGATACGGGATCAAATAACTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS-3UTR CAA 90 bp | GCTACTGTCTTCACTGCTAACTGTGGGGACAGTATAGTTAATGATGAGGTACATACGAAAGGTATCGCATaGTGGAAGAATACATATCTC | + |
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Preference number: 5 (lower is better) Translates to: ATVFTANCGDSIVNDEVHTKGIA*WKNTYL Trigger: GAGATATGTATTCTTCCACAATGCGATACCTTTCGT...ATGTACCTCATCATTAACTATACTGTCCCCACAGTTAGCAGTGAAGACAGTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS CCA 72 bp | AGTCGCGCGCGCCCTGCGCCGTGTTCAGCGCCTCCATaGGCTCCTTCTTGGGGTGTGTGCCCAGAAGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: SRARPAPCSAPP*APSWGVCPEAG Trigger: CCCGGCTTCTGGGCACACACCCCAAGAAGGAGCCCATGGAGGCGCTGAACACGGCGCAGGGCGCGCGCGACT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS TCA 72 bp | GCAAGCAGCTCCTCTCCGTGGAGTGCAGGCTGTAGATaGAGTCGCGCGCGCCCTGCGCCGTGTTCAGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: ASSSSPWSAGCR*SRARPAPCSAP Trigger: AGGCGCTGAACACGGCGCAGGGCGCGCGCGACTTCATCTACAGCCTGCACTCCACGGAGAGGAGCTGCTTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS TCA 72 bp | GTGCGATGGCAATGGACTCGAAGCGGTGCAGCTCTTTaGGCAAGCAGCTCCTCTCCGTGGAGTGCAGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: VRWQWTRSGAAL*ASSSSPWSAGC Trigger: ACAGCCTGCACTCCACGGAGAGGAGCTGCTTGCTCAAAGAGCTGCACCGCTTCGAGTCCATTGCCATCGCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS GCA 72 bp | TTCCTCCAAAGAAAATCAACGGGAACATTCCTAGAATaGAGCCGATCGTCACCCCAACAGCCTTGCCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: FLQRKSTGTFLE*SRSSPQQPCPN Trigger: ATTTGGGCAAGGCTGTTGGGGTGACGATCGGCTGCATTCTAGGAATGTTCCCGTTGATTTTCTTTGGAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS CAA 72 bp | CCCAACAGCCTTGCCCAAATGTGTGCTAACACGTGTTaGCCACATGTCAACTTGCTTTGGTGTAAGATCAGG | + |
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Preference number: 6 (lower is better) Translates to: PNSLAQMCANTC*PHVNLLWCKIR Trigger: CCTGATCTTACACCAAAGCAAGTTGACATGTGGCAAACACGTGTTAGCACACATTTGGGCAAGGCTGTTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS CCA 72 bp | CATTGTGGAAGAATACATATCTCAGCTGTCCTGGAGTaGGTGGTAGAGCTTCCAATTTTTCTTGTGCGATGG | + |
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Preference number: 6 (lower is better) Translates to: HCGRIHISAVLE*VVELPIFLVRW Trigger: CCATCGCACAAGAAAAATTGGAAGCTCTACCACCCACTCCAGGACAGCTGAGATATGTATTCTTCCACAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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| CDS CAA 72 bp | TTATCCAAAAAGCCAAACCCTACGAAAGGTATCGCATaGTGGAAGAATACATATCTCAGCTGTCCTGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: LSKKPNPTKGIA*WKNTYLSCPGV Trigger: CACTCCAGGACAGCTGAGATATGTATTCTTCCACAATGCGATACCTTTCGTAGGGTTTGGCTTTTTGGATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072113.6 |
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