RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM63C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034145

Ensembl transcript IDs: ENSMUST00000110187.8, ENSMUST00000131878.2, ENSMUST00000146292.8, ENSMUST00000154801.8, ENSMUST00000156162.8

Found 231 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCTGCACCGCTCTGGAGGTGCAGCCTGTGCCCAGAAGGCAGCCTTaGGTCCTGAGGCCGAGCCCCAGCATGGCCCTGCGTCTACACGAT +
Preference number: 1 (lower is better)
Translates to: VCTALEVQPVPRRQP*VLRPSPSMALRLHD
Trigger: ATCGTGTAGACGCAGGGCCATGCTGGGGCTCGGCCTCAGGACCCAAGGCTGCCTTCTGGGCACAGGCTGCACCTCCAGAGCGGTGCAGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 90 bp GGGAGGAGGCGGGGGTCAGGTTCAGCTCTGGCTCCTGTAGCACGGTaGCCACGTACAGCATTCACTGGGTCCATCAATAGCTCCCCGCAG +
Preference number: 1 (lower is better)
Translates to: GRRRGSGSALAPVAR*PRTAFTGSINSSPQ
Trigger: CTGCGGGGAGCTATTGATGGACCCAGTGAATGCTGTACGTGGCCACCGTGCTACAGGAGCCAGAGCTGAACCTGACCCCCGCCTCCTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR GCA 90 bp GGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTaGCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCC +
Preference number: 1 (lower is better)
Translates to: GSAQGHRVADVSIRS*PKSVEGSSLLPPPA
Trigger: GGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR GCA 90 bp GTACAGCATTCACTGGGTCCATCAATAGCTCCCCGCAGCTCTGTCTaGACCGCTCTGGAGGTGCAGCCTGTGCCCAGAAGGCAGCCTTGG +
Preference number: 1 (lower is better)
Translates to: VQHSLGPSIAPRSSV*TALEVQPVPRRQPW
Trigger: CCAAGGCTGCCTTCTGGGCACAGGCTGCACCTCCAGAGCGGTGCAGACAGAGCTGCGGGGAGCTATTGATGGACCCAGTGAATGCTGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR GCA 90 bp GTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCAGGCTCTCCCCTTaGCCCTGGACTGGAGTCCTCATCAGTGACTCTGGCCCTCCATTT +
Preference number: 1 (lower is better)
Translates to: VEGSSLLPPPARLSP*PWTGVLISDSGPPF
Trigger: AAATGGAGGGCCAGAGTCACTGATGAGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 90 bp GCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTaGAAGGAAGCTCCTTACTGCCTCCCCCTGCCAGGCTCTCCCCTT +
Preference number: 1 (lower is better)
Translates to: ATGWQMSPSGAAQSL*KEAPYCLPLPGSPL
Trigger: AAGGGGAGAGCCTGGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR CCA 90 bp CTCCCTTGCAAAGCCCCTCAGACCGCTCTCTTCTTCTCCCTCTTCTaGCTGGCTGTTGATGGTGCCATAGGTGTGCCGGGCTGGGGAGGA +
Preference number: 1 (lower is better)
Translates to: LPCKAPQTALFFSLF*LAVDGAIGVPGWGG
Trigger: TCCTCCCCAGCCCGGCACACCTATGGCACCATCAACAGCCAGCCAGAAGAGGGAGAAGAAGAGAGCGGTCTGAGGGGCTTTGCAAGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 90 bp CAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTaGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCATCAGCTT +
Preference number: 1 (lower is better)
Translates to: QLEWGRDGEPPGSCQ*ASSYLFPYAHSHQL
Trigger: AAGCTGATGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR CCA 90 bp TACTCGCAGGATGGAGAAGAAGAGCATCCAGAAGAGCCCCAAGAGTaGGGCAAAAATGGCCTGGTAGACTGCGGCCATGTGGATCTGCGC +
Preference number: 1 (lower is better)
Translates to: YSQDGEEEHPEEPQE*GKNGLVDCGHVDLR
Trigger: GCGCAGATCCACATGGCCGCAGTCTACCAGGCCATTTTTGCCCCACTCTTGGGGCTCTTCTGGATGCTCTTCTTCTCCATCCTGCGAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 90 bp GCTGCTCCTCCAGCTCACTGTAGTACTGCTCCGCATCTACCTCCTTaGAGCAGGTCCAACATTTGCAGAAGCACAGGCGGGAACAGGGAT +
Preference number: 1 (lower is better)
Translates to: AAPPAHCSTAPHLPP*SRSNICRSTGGNRD
Trigger: ATCCCTGTTCCCGCCTGTGCTTCTGCAAATGTTGGACCTGCTTCAAGGAGGTAGATGCGGAGCAGTACTACAGTGAGCTGGAGGAGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 90 bp GGGCAAAAATGGCCTGGTAGACTGCGGCCATGTGGATCTGCGCGTTaGGTTTGGTGGGCGCGTAGGAGTAGTACATGTTATAGCGGTCTG +
Preference number: 1 (lower is better)
Translates to: GQKWPGRLRPCGSAR*VWWARRSSTCYSGL
Trigger: CAGACCGCTATAACATGTACTACTCCTACGCGCCCACCAAACTCAACGCGCAGATCCACATGGCCGCAGTCTACCAGGCCATTTTTGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR GCA 90 bp GCCTGTCCCAAGCAGAGCCGCTGTGATCACGTAGTTGATGAAGAATaGACCATTGTCTGGGAGGAACACGCACTGGAACCTGATGGTCGC +
Preference number: 1 (lower is better)
Translates to: ACPKQSRCDHVVDEE*TIVWEEHALEPDGR
Trigger: GCGACCATCAGGTTCCAGTGCGTGTTCCTCCCAGACAATGGTGCATTCTTCATCAACTACGTGATCACAGCGGCTCTGCTTGGGACAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR GCA 90 bp CTCTTTCTGGCTCTGATTTGGATAAGAAGAGGCGGGTACAATATGTaGAGAGTGACCCCAGGCGCATCAGCTCCATGCCTGTCCCAAGCA +
Preference number: 1 (lower is better)
Translates to: LFLALIWIRRGGYNM*RVTPGASAPCLSQA
Trigger: TGCTTGGGACAGGCATGGAGCTGATGCGCCTGGGGTCACTCTGCACATATTGTACCCGCCTCTTCTTATCCAAATCAGAGCCAGAAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR GCA 90 bp AGAGAAACACAGAAGGCCTCAGTCACTTCCCAGGCTTGTTCCAGCTaGCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGATGCTCTG +
Preference number: 1 (lower is better)
Translates to: RETQKASVTSQACSS*PLIRGRSTEFLDAL
Trigger: CAGAGCATCTAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAAGTGACTGAGGCCTTCTGTGTTTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR CCA 90 bp CTGGCATCCTGGAAGGTGACAAAGATCAGGTCAAGCCTCTTCAGCTaGACACGATTAAGCTCAGCATTGAACTCGTCTGTCAGCTGCTCC +
Preference number: 1 (lower is better)
Translates to: LASWKVTKIRSSLFS*TRLSSALNSSVSCS
Trigger: GGAGCAGCTGACAGACGAGTTCAATGCTGAGCTTAATCGTGTCCAGCTGAAGAGGCTTGACCTGATCTTTGTCACCTTCCAGGATGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 90 bp CCCGCATGGCATGGCGCCTTTGATCATCCAAGTCAATCAGGTTCCTaGCATCATAGCAGAAATGGACTCTGGTCACCACACATCCAGGAT +
Preference number: 1 (lower is better)
Translates to: PAWHGAFDHPSQSGS*HHSRNGLWSPHIQD
Trigger: ATCCTGGATGTGTGGTGACCAGAGTCCATTTCTGCTATGATGTCAGGAACCTGATTGACTTGGATGATCAAAGGCGCCATGCCATGCGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 90 bp TCGAGTAAGACAACTCTGGCTCTCTCCTCTCTGGGTGACTTCTATTaGTTGTTGTTTTCACCCCACTCTTCAGCCAGGGCCACGGAAGCA +
Preference number: 1 (lower is better)
Translates to: SSKTTLALSSLGDFY*LLFSPHSSARATEA
Trigger: TGCTTCCGTGGCCCTGGCTGAAGAGTGGGGTGAAAACAACAATCAATAGAAGTCACCCAGAGAGGAGAGAGCCAGAGTTGTCTTACTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 90 bp CAGAGCCGCTGTGATCACGTAGTTGATGAAGAATGCACCATTGTCTaGGAGGAACACGCACTGGAACCTGATGGTCGCATGTTCAAGATA +
Preference number: 1 (lower is better)
Translates to: QSRCDHVVDEECTIV*EEHALEPDGRMFKI
Trigger: TATCTTGAACATGCGACCATCAGGTTCCAGTGCGTGTTCCTCCCAGACAATGGTGCATTCTTCATCAACTACGTGATCACAGCGGCTCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 90 bp GGCATGAGCAACCCTCCAGTGGTAGTTTTTGACGATGGTCGTGACTaGAGACTGCTTGGGGTGTCTACCACAATGGATGTACTTGTAATC +
Preference number: 1 (lower is better)
Translates to: GMSNPPVVVFDDGRD*RLLGVSTTMDVLVI
Trigger: GATTACAAGTACATCCATTGTGGTAGACACCCCAAGCAGTCTTCAGTCACGACCATCGTCAAAAACTACCACTGGAGGGTTGCTCATGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 90 bp TACATAGGTGATCATCAGTGTCCTCGTGAAGTGGAGGCTCTTCTTTaGCACAAATCCCAAGCAGTGATGACCCATGAAGGCAAGGTTGAT +
Preference number: 1 (lower is better)
Translates to: YIGDHQCPREVEALL*HKSQAVMTHEGKVD
Trigger: ATCAACCTTGCCTTCATGGGTCATCACTGCTTGGGATTTGTGCCAAAGAAGAGCCTCCACTTCACGAGGACACTGATGATCACCTATGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 90 bp GAGTCTGAGATCTGGCTCTCACTGATTGATCGAGTAAGACAACTCTaGCTCTCTCCTCTCTGGGTGACTTCTATTGATTGTTGTTTTCAC +
Preference number: 1 (lower is better)
Translates to: ESEIWLSLIDRVRQL*LSPLWVTSIDCCFH
Trigger: GTGAAAACAACAATCAATAGAAGTCACCCAGAGAGGAGAGAGCCAGAGTTGTCTTACTCGATCAATCAGTGAGAGCCAGATCTCAGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp TTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCGCCAGGCTCTCCCCTTaGCCCTGGACTGGAGTCCTC +
Preference number: 2 (lower is better)
Translates to: FRLVSRLGSAQGHRVADVARLSP*PWTGVL
Trigger: GAGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGC...GACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCGCCAGGCTCTCCCCTTaGCCCTGGACTGGAGTCCTC +
Preference number: 2 (lower is better)
Translates to: LVSRLGSAQGHRVADVSIARLSP*PWTGVL
Trigger: GAGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGC...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp CCTTCCTGGAACTGGGCTGAGTCCAGCTCCCTTGCAAAGCCCCTCAGACCGCTCAATGGCCTGGTAGACTaGGGCCATGTGGATCTGCGC +
Preference number: 2 (lower is better)
Translates to: PSWNWAESSSLAKPLRPLNGLVD*GHVDLR
Trigger: GCGCAGATCCACATGGCCGCAGTCTACCAGGCCATT...GAGCGGTCTGAGGGGCTTTGCAAGGGAGCTGGACTCAGCCCAGTTCCAGGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp CCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCAGCCAGGCTCTCCCCTTaGCCCTGGACTGGAGTCCTC +
Preference number: 2 (lower is better)
Translates to: PRKLSVGFILSLPVRTLSARLSP*PWTGVL
Trigger: GAGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGC...TGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp GTGGAGGATAGGGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGCACAGGGCCACAGGGTaGCAGATGTCTCCATCAGGA +
Preference number: 2 (lower is better)
Translates to: VEDRGLEQSLMGSWSGVGHRATG*QMSPSG
Trigger: TCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTG...CCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp CCTTCCTGGAACTGGGCTGAGTCCAGCTCCCTTGCAAAGCCCCTCAGACCGCTCGAAGAGCCCCAAGAGTaGGGCAAAAATGGCCTGGTA +
Preference number: 2 (lower is better)
Translates to: PSWNWAESSSLAKPLRPLEEPQE*GKNGLV
Trigger: TACCAGGCCATTTTTGCCCCACTCTTGGGGCTCTTC...GAGCGGTCTGAGGGGCTTTGCAAGGGAGCTGGACTCAGCCCAGTTCCAGGAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR TCA 90 bp GCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCACACTCTCATCAGCTTaGCCCCAGCAAGACACACAG +
Preference number: 2 (lower is better)
Translates to: AILDGQLEWGRDGEPPGSTLSSA*PQQDTQ
Trigger: CTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGT...GCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp GCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCCCACTCCCAGAAACATaGTATAAGCCTCCTCCACCC +
Preference number: 2 (lower is better)
Translates to: AILDGQLEWGRDGEPPGSPLPET*YKPPPP
Trigger: GGGTGGAGGAGGCTTATACCATGTTTCTGGGAGTGG...GCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGTGGGAGTGGAGGTaGTGCTGCTTGGTTCCACAT +
Preference number: 2 (lower is better)
Translates to: LVSRLGSAQGHRVADVSIRWEWR*CCLVPH
Trigger: ATGTGGAACCAAGCAGCACCACCTCCACTCCCACCT...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR TCA 90 bp TTCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTGTCTGGAGCAATCCTTaGTGGGCAGCTGGAGTGGGG +
Preference number: 2 (lower is better)
Translates to: FPGLFQLPLDQRAKYRVSVWSNP*WAAGVG
Trigger: CCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGAC...AGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp CCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTAAGGAAGCTCCTTACTaGCTCCCCCTGCCAGGCTCT +
Preference number: 2 (lower is better)
Translates to: PYAHSHQLDPSKTHSRQSKEAPY*LPLPGS
Trigger: AGAGCCTGGCAGGGGGAGGCAGTAAGGAGCTTCCTT...AGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp CAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGAACGCGAAGAGGCTATaGAGCCACAGGAACTTGCTC +
Preference number: 2 (lower is better)
Translates to: QQIRLCTGPQGGRCLHQENAKRL*SHRNLL
Trigger: GAGCAAGTTCCTGTGGCTGCATAGCCTCTTCGCGTT...CTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp GGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCGTTTCTTCCTCAGGCTaGTCATACCGTTGGGCAATC +
Preference number: 2 (lower is better)
Translates to: GSGAILDGQLEWGRDGEPVSSSG*SYRWAI
Trigger: GATTGCCCAACGGTATGAGCAGCCTGAGGAAGAAAC...GGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp AGGGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACGCTGCCCAAAGTCTGTaGAAGGAAGCTCCTTACTGC +
Preference number: 2 (lower is better)
Translates to: RGLEQSLMGSWSGVGMVNAAQSL*KEAPYC
Trigger: GCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGC...GTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp AGGGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACTTCTTCTCCCTCTTCTaGCTGGCTGTTGATGGTGCC +
Preference number: 2 (lower is better)
Translates to: RGLEQSLMGSWSGVGMVNFFSLF*LAVDGA
Trigger: GGCACCATCAACAGCCAGCCAGAAGAGGGAGAAGAA...GTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp CTGAGTCACGATTGGGCTCTGCAATTTCTCAATGGGGCGGGTGACATTGTATATGCCAGGCTCTCCCCTTaGCCCTGGACTGGAGTCCTC +
Preference number: 2 (lower is better)
Translates to: LSHDWALQFLNGAGDIVYARLSP*PWTGVL
Trigger: GAGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGC...ATATACAATGTCACCCGCCCCATTGAGAAATTGCAGAGCCCAATCGTGACTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp TTCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTCACAGGGCCACAGGGTaGCAGATGTCTCCATCAGGA +
Preference number: 2 (lower is better)
Translates to: FPGLFQLPLDQRAKYRVSHRATG*QMSPSG
Trigger: TCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTG...AGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp TCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTTGATGGGCAGCCCACTCCCAGAAACATaGTATAAGCCTCCTCCACCC +
Preference number: 2 (lower is better)
Translates to: SAQTAVEDRGLEQSLMGSPLPET*YKPPPP
Trigger: GGGTGGAGGAGGCTTATACCATGTTTCTGGGAGTGG...GCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp TTCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTTCCTTGATGGGCAGCTaGAGTGGGGTAGGGATGGTG +
Preference number: 2 (lower is better)
Translates to: FPGLFQLPLDQRAKYRVSSLMGS*SGVGMV
Trigger: CACCATCCCTACCCCACTCCAGCTGCCCATCAAGGA...AGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR CAA 90 bp AGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCATCAGCTaGACCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGG +
Preference number: 2 (lower is better)
Translates to: SGLHPISSRTHTLIS*TPARHTADSLLCPG
Trigger: CCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp CCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTGCTGCCCAAAGTCTGTaGAAGGAAGCTCCTTACTGC +
Preference number: 2 (lower is better)
Translates to: PYAHSHQLDPSKTHSRQSAAQSL*KEAPYC
Trigger: GCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGC...AGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp GAAGAACTGAGTCACGATTGGGCTCTGCAATTTCTCAATGGGGCGGGTGACATTGATGGGCAGCTGGAGTaGGGTAGGGATGGTGAACCC +
Preference number: 2 (lower is better)
Translates to: EELSHDWALQFLNGAGDIDGQLE*GRDGEP
Trigger: GGGTTCACCATCCCTACCCCACTCCAGCTGCCCATC...AATGTCACCCGCCCCATTGAGAAATTGCAGAGCCCAATCGTGACTCAGTTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp GTGGATCTGCGCGTTGAGTTTGGTGGGCGCGTAGGAGTAGTACATGTTATAGCGAGCAGGTCCAACATTTaGAGAAGCACAGGCGGGAAC +
Preference number: 2 (lower is better)
Translates to: VDLRVEFGGRVGVVHVIASRSNI*RSTGGN
Trigger: GTTCCCGCCTGTGCTTCTGCAAATGTTGGACCTGCT...CGCTATAACATGTACTACTCCTACGCGCCCACCAAACTCAACGCGCAGATCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp CACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCGCTGCCCAAAGTCTGTaGAAGGAAGCTCCTTACTGC +
Preference number: 2 (lower is better)
Translates to: HSHQLDPSKTHSRQSLVSAAQSL*KEAPYC
Trigger: GCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGC...GGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp CCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCAAGTGTCCTCGTGAAGTaGAGGCTCTTCTTTGGCACA +
Preference number: 2 (lower is better)
Translates to: PRKLSVGFILSLPVRTLSSVLVK*RLFFGT
Trigger: TGTGCCAAAGAAGAGCCTCCACTTCACGAGGACACT...TGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR GCA 90 bp AGGGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACGTAGTTGATGAAGAATaGACCATTGTCTGGGAGGAA +
Preference number: 2 (lower is better)
Translates to: RGLEQSLMGSWSGVGMVNVVDEE*TIVWEE
Trigger: TTCCTCCCAGACAATGGTGCATTCTTCATCAACTAC...GTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp TGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCATCAGCTTGACCCACTCCCAGAAACATaGTATAAGCCTCCTCCACCC +
Preference number: 2 (lower is better)
Translates to: CQWASSYLFPYAHSHQLDPLPET*YKPPPP
Trigger: GGGTGGAGGAGGCTTATACCATGTTTCTGGGAGTGG...GTCAAGCTGATGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp TTACCACATGCATGTAGGTCTCCTTTAATGAGCCTGAGTAGCTGTCCCAGCTACTCCTTGATGGGCAGCTaGAGTGGGGTAGGGATGGTG +
Preference number: 2 (lower is better)
Translates to: LPHACRSPLMSLSSCPSYSLMGS*SGVGMV
Trigger: CACCATCCCTACCCCACTCCAGCTGCCCATCAAGGA...GTAGCTGGGACAGCTACTCAGGCTCATTAAAGGAGACCTACATGCATGTGGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR TCA 90 bp CATGCACAGATACAGCAGCCCAAACGGGACAATGATAGGGCAAGTGATGCTATAACAGAGGGGAAGAACTaGGTCACGATTGGGCTCTGC +
Preference number: 2 (lower is better)
Translates to: HAQIQQPKRDNDRASDAITEGKN*VTIGLC
Trigger: GCAGAGCCCAATCGTGACTCAGTTCTTCCCCTCTGT...TATAGCATCACTTGCCCTATCATTGTCCCGTTTGGGCTGCTGTATCTGTGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp GTGCCTTGTTCACAAGGCCCAGTACACATACCTTTTTCTGCTCAGACTGCAGTGCCACTCCCAGAAACATaGTATAAGCCTCCTCCACCC +
Preference number: 2 (lower is better)
Translates to: VPCSQGPVHIPFSAQTAVPLPET*YKPPPP
Trigger: GGGTGGAGGAGGCTTATACCATGTTTCTGGGAGTGG...CACTGCAGTCTGAGCAGAAAAAGGTATGTGTACTGGGCCTTGTGAACAAGGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp CACAGTCTCTGTTTCTTCCTCAGGCTGCTCATACCGTTGGGCAATCCGGAGCTTAACCTACTCGCAGGATaGAGAAGAAGAGCATCCAGA +
Preference number: 2 (lower is better)
Translates to: HSLCFFLRLLIPLGNPELNLLAG*RRRASR
Trigger: TCTGGATGCTCTTCTTCTCCATCCTGCGAGTAGGTT...AAGCTCCGGATTGCCCAACGGTATGAGCAGCCTGAGGAAGAAACAGAGACTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CCA 90 bp TGGTCGCATGTTCAAGATAGTAGATGTCAAAGAGCCATCGTAAAAACACATGCAAGAGCCTGCCCCGCATaGCATGGCGCCTTTGATCAT +
Preference number: 2 (lower is better)
Translates to: WSHVQDSRCQRAIVKTHARACPA*HGAFDH
Trigger: ATGATCAAAGGCGCCATGCCATGCGGGGCAGGCTCT...TGCATGTGTTTTTACGATGGCTCTTTGACATCTACTATCTTGAACATGCGACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 72 bp GCTCTGGAGGTGCAGCCTGTGCCCAGAAGGCAGCCTTaGGTCCTGAGGCCGAGCCCCAGCATGGCCCTGCGT +
Preference number: 3 (lower is better)
Translates to: ALEVQPVPRRQP*VLRPSPSMALR
Trigger: ACGCAGGGCCATGCTGGGGCTCGGCCTCAGGACCCAAGGCTGCCTTCTGGGCACAGGCTGCACCTCCAGAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp GCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGTGCCAGGCTCTCCCCTaGCCCCTGGACTGGAGTCCT +
Preference number: 3 (lower is better)
Translates to: AQGHRVADVSIRSCPKSVCQALP*PLDWSP
Trigger: AGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGCA...CACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp ACCCCATCCTTCCCTTTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACTGCCAGGCTCTCCCCTaGCCCCTGGACTGGAGTCCT +
Preference number: 3 (lower is better)
Translates to: TPSFPFRLVSRLGSAQGHCQALP*PLDWSP
Trigger: AGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGCA...GTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAAAGGGAAGGATGGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR GCA 72 bp TCACTGGGTCCATCAATAGCTCCCCGCAGCTCTGTCTaGACCGCTCTGGAGGTGCAGCCTGTGCCCAGAAGG +
Preference number: 3 (lower is better)
Translates to: SLGPSIAPRSSV*TALEVQPVPRR
Trigger: CCTTCTGGGCACAGGCTGCACCTCCAGAGCGGTGCAGACAGAGCTGCGGGGAGCTATTGATGGACCCAGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp CCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTTGCCAGGCTCTCCCCTaGCCCCTGGACTGGAGTCCT +
Preference number: 3 (lower is better)
Translates to: PYAHSHQLDPSKTHSRQSCQALP*PLDWSP
Trigger: AGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGCA...AGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp AGGGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACGGTCTGGAGCAATCCTaGATGGGCAGCTGGAGTGGG +
Preference number: 3 (lower is better)
Translates to: RGLEQSLMGSWSGVGMVNGLEQS*MGSWSG
Trigger: CCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACC...GTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp CCTTCCTGGAACTGGGCTGAGTCCAGCTCCCTTGCAAAGCCCCTCAGACCGCTCACAGCCACTGGTGCCTaGTTCACAAGGCCCAGTACA +
Preference number: 3 (lower is better)
Translates to: PSWNWAESSSLAKPLRPLTATGA*FTRPST
Trigger: TGTACTGGGCCTTGTGAACAAGGCACCAGTGGCTGT...GAGCGGTCTGAGGGGCTTTGCAAGGGAGCTGGACTCAGCCCAGTTCCAGGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp TGGAACTGGGCTGAGTCCAGCTCCCTTGCAAAGCCCCTCAGACCGCTCTCTTCTAGTCACTTCCCAGGCTaGTTCCAGCTGCCCCTTGAT +
Preference number: 3 (lower is better)
Translates to: WNWAESSSLAKPLRPLSSSHFPG*FQLPLD
Trigger: ATCAAGGGGCAGCTGGAACAAGCCTGGGAAGTGACT...AGAAGAGAGCGGTCTGAGGGGCTTTGCAAGGGAGCTGGACTCAGCCCAGTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp TTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTCACACTCTCATCAGCTaGACCCCAGCAAGACACACA +
Preference number: 3 (lower is better)
Translates to: LMGSWSGVGMVNPQEAVSHTLIS*TPARHT
Trigger: TGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTG...ACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp CCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACGGTCTGGAGCAATCCTaGATGGGCAGCTGGAGTGGG +
Preference number: 3 (lower is better)
Translates to: PQQDTQQTVSCVLGFRYHGLEQS*MGSWSG
Trigger: CCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACC...GTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR CCA 72 bp TGGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTaGGCTTCATCCTATCTCTTCCCGTACGCACACTCT +
Preference number: 3 (lower is better)
Translates to: WGRDGEPPGSCQ*ASSYLFPYAHS
Trigger: AGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp CATGCATGTAGGTCTCCTTTAATGAGCCTGAGTAGCTGTCCCAGCTACCATGATTGCCAGGCTCTCCCCTaGCCCCTGGACTGGAGTCCT +
Preference number: 3 (lower is better)
Translates to: HACRSPLMSLSSCPSYHDCQALP*PLDWSP
Trigger: AGGACTCCAGTCCAGGGGCAAGGGGAGAGCCTGGCA...ATCATGGTAGCTGGGACAGCTACTCAGGCTCATTAAAGGAGACCTACATGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp CCTTCCTGGAACTGGGCTGAGTCCAGCTCCCTTGCAAAGCCCCTCAGACCGCTCCTGGAAATCTGTGGCTaGGTTCTTTCTGATGTGAAC +
Preference number: 3 (lower is better)
Translates to: PSWNWAESSSLAKPLRPLLEICG*VLSDVN
Trigger: GTTCACATCAGAAAGAACCAAGCCACAGATTTCCAG...GAGCGGTCTGAGGGGCTTTGCAAGGGAGCTGGACTCAGCCCAGTTCCAGGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 72 bp CCAGCTCACTGTAGTACTGCTCCGCATCTACCTCCTTaGAGCAGGTCCAACATTTGCAGAAGCACAGGCGGG +
Preference number: 3 (lower is better)
Translates to: PAHCSTAPHLPP*SRSNICRSTGG
Trigger: CCCGCCTGTGCTTCTGCAAATGTTGGACCTGCTTCAAGGAGGTAGATGCGGAGCAGTACTACAGTGAGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 72 bp TGGCCTGGTAGACTGCGGCCATGTGGATCTGCGCGTTaGGTTTGGTGGGCGCGTAGGAGTAGTACATGTTAT +
Preference number: 3 (lower is better)
Translates to: WPGRLRPCGSAR*VWWARRSSTCY
Trigger: ATAACATGTACTACTCCTACGCGCCCACCAAACTCAACGCGCAGATCCACATGGCCGCAGTCTACCAGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR GCA 72 bp CAGAAGGCCTCAGTCACTTCCCAGGCTTGTTCCAGCTaGCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTA +
Preference number: 3 (lower is better)
Translates to: QKASVTSQACSS*PLIRGRSTEFL
Trigger: TAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAAGTGACTGAGGCCTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
3UTR GCA 72 bp GCTCTGATTTGGATAAGAAGAGGCGGGTACAATATGTaGAGAGTGACCCCAGGCGCATCAGCTCCATGCCTG +
Preference number: 3 (lower is better)
Translates to: ALIWIRRGGYNM*RVTPGASAPCL
Trigger: CAGGCATGGAGCTGATGCGCCTGGGGTCACTCTGCACATATTGTACCCGCCTCTTCTTATCCAAATCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 72 bp CATAGATGCGTCTCACTGTCCTGGCATCCTGGAAGGTaGCAAAGATCAGGTCAAGCCTCTTCAGCTGGACAC +
Preference number: 3 (lower is better)
Translates to: HRCVSLSWHPGR*QRSGQASSAGH
Trigger: GTGTCCAGCTGAAGAGGCTTGACCTGATCTTTGTCACCTTCCAGGATGCCAGGACAGTGAGACGCATCTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR-3UTR CAA 90 bp GTGGATCTGCGCGTTGAGTTTGGTGGGCGCGTAGGAGTAGTACATGTTATAGCGTCCGCATCTACCTCCTaGAAGCAGGTCCAACATTTG +
Preference number: 3 (lower is better)
Translates to: VDLRVEFGGRVGVVHVIASASTS*KQVQHL
Trigger: CAAATGTTGGACCTGCTTCAAGGAGGTAGATGCGGA...CGCTATAACATGTACTACTCCTACGCGCCCACCAAACTCAACGCGCAGATCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 72 bp ACAGTCTCTGTTTCTTCCTCAGGCTGCTCATACCGTTaGGCAATCCGGAGCTTCCCCAGAAAAACACCAGAA +
Preference number: 3 (lower is better)
Translates to: TVSVSSSGCSYR*AIRSFPRKTPE
Trigger: TTCTGGTGTTTTTCTGGGGAAGCTCCGGATTGCCCAACGGTATGAGCAGCCTGAGGAAGAAACAGAGACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 72 bp TGTGATCACGTAGTTGATGAAGAATGCACCATTGTCTaGGAGGAACACGCACTGGAACCTGATGGTCGCATG +
Preference number: 3 (lower is better)
Translates to: CDHVVDEECTIV*EEHALEPDGRM
Trigger: CATGCGACCATCAGGTTCCAGTGCGTGTTCCTCCCAGACAATGGTGCATTCTTCATCAACTACGTGATCACA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 72 bp ATGATGAGGGAAGACATGGAGAATAAGGTGATGCTGTaGAGGGAACCTACTCGCAGGATGGAGAAGAAGAGC +
Preference number: 3 (lower is better)
Translates to: MMREDMENKVML*REPTRRMEKKS
Trigger: GCTCTTCTTCTCCATCCTGCGAGTAGGTTCCCTCCACAGCATCACCTTATTCTCCATGTCTTCCCTCATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 72 bp AACCCTCCAGTGGTAGTTTTTGACGATGGTCGTGACTaGAGACTGCTTGGGGTGTCTACCACAATGGATGTA +
Preference number: 3 (lower is better)
Translates to: NPPVVVFDDGRD*RLLGVSTTMDV
Trigger: TACATCCATTGTGGTAGACACCCCAAGCAGTCTTCAGTCACGACCATCGTCAAAAACTACCACTGGAGGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CCA 72 bp TGGAAGGTGACAAAGATCAGGTCAAGCCTCTTCAGCTaGACACGATTAAGCTCAGCATTGAACTCGTCTGTC +
Preference number: 3 (lower is better)
Translates to: WKVTKIRSSLFS*TRLSSALNSSV
Trigger: GACAGACGAGTTCAATGCTGAGCTTAATCGTGTCCAGCTGAAGAGGCTTGACCTGATCTTTGTCACCTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR TCA 72 bp ATGCACCATTGTCTGGGAGGAACACGCACTGGAACCTaGTGGTCGCATGTTCAAGATAGTAGATGTCAAAGA +
Preference number: 3 (lower is better)
Translates to: MHHCLGGTRTGT*WSHVQDSRCQR
Trigger: TCTTTGACATCTACTATCTTGAACATGCGACCATCAGGTTCCAGTGCGTGTTCCTCCCAGACAATGGTGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
3UTR CAA 72 bp CGCTCTGGAGGTGCAGCCTGTGCCCAGAAGGCAGCCTaGGGTCCTGAGGCCGAGCCCCAGCATGGCCCTGCG +
Preference number: 4 (lower is better)
Translates to: RSGGAACAQKAA*GPEAEPQHGPA
Trigger: CGCAGGGCCATGCTGGGGCTCGGCCTCAGGACCCAAGGCTGCCTTCTGGGCACAGGCTGCACCTCCAGAGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
CDS-3UTR CCA 90 bp TTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCATAGGTGTGCCGGGCTaGGGAGGAGGCGGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: FRLVSRLGSAQGHRVADVIGVPG*GGGGGQ
Trigger: CTGACCCCCGCCTCCTCCCCAGCCCGGCACACCTAT...GACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGCCCCTGGAGGACAGTaGTCCGCGACTGGAAGCACT +
Preference number: 4 (lower is better)
Translates to: AQGHRVADVSIRSCPKSVAPGGQ*SATGST
Trigger: AGTGCTTCCAGTCGCGGAGCACTGTCCTCCAGGGGC...CACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp GCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGGCGCATCAGCTCCATaGCTGTCCCAAGCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: AQGHRVADVSIRSCPKSVGASAP*LSQAEP
Trigger: CGGCTCTGCTTGGGACAGGCATGGAGCTGATGCGCC...CACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp AGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAATGTGGATCTGCGCGTTaGGTTTGGTGGGCGCGTAGG +
Preference number: 4 (lower is better)
Translates to: RLCTGPQGGRCLHQELPKCGSAR*VWWARR
Trigger: CCTACGCGCCCACCAAACTCAACGCGCAGATCCACA...TTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp AGGGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACGCCCCTGGAGGACAGTaGTCCGCGACTGGAAGCACT +
Preference number: 4 (lower is better)
Translates to: RGLEQSLMGSWSGVGMVNAPGGQ*SATGST
Trigger: AGTGCTTCCAGTCGCGGAGCACTGTCCTCCAGGGGC...GTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp CCCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCCCGTGTAGTAGAGCCTaGCCCGCATGGCATGGCGCC +
Preference number: 4 (lower is better)
Translates to: PQEAVSGLHPISSRTHTLPCSRA*PAWHGA
Trigger: GGCGCCATGCCATGCGGGGCAGGCTCTACTACACGG...GAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCGGCGCATCAGCTCCATaGCTGTCCCAAGCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: LVSRLGSAQGHRVADVSIGASAP*LSQAEP
Trigger: CGGCTCTGCTTGGGACAGGCATGGAGCTGATGCGCC...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp GCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCCTTCTGGCTGGCTGTTaGTGGTGCCATAGGTGTGCC +
Preference number: 4 (lower is better)
Translates to: AILDGQLEWGRDGEPPGSLLAGC*WCHRCA
Trigger: GGCACACCTATGGCACCATCAACAGCCAGCCAGAAG...GCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCGCCCCTGGAGGACAGTaGTCCGCGACTGGAAGCACT +
Preference number: 4 (lower is better)
Translates to: VSIRSCPKSVEGSSLLPPAPGGQ*SATGST
Trigger: AGTGCTTCCAGTCGCGGAGCACTGTCCTCCAGGGGC...GGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp TCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTTGATGGGCAGCGCCCCTGGAGGACAGTaGTCCGCGACTGGAAGCACT +
Preference number: 4 (lower is better)
Translates to: SAQTAVEDRGLEQSLMGSAPGGQ*SATGST
Trigger: AGTGCTTCCAGTCGCGGAGCACTGTCCTCCAGGGGC...GCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp GGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCAGAAGCCCCTGTCCCTaGGTTCCGCCTCCAAGGAAA +
Preference number: 4 (lower is better)
Translates to: GSGAILDGQLEWGRDGEPRSPCP*VPPPRK
Trigger: TTTCCTTGGAGGCGGAACGCAGGGACAGGGGCTTCT...GGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp CCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCACCGTGTAGTAGAGCCTaGCCCGCATGGCATGGCGCC +
Preference number: 4 (lower is better)
Translates to: PRKLSVGFILSLPVRTLSPCSRA*PAWHGA
Trigger: GGCGCCATGCCATGCGGGGCAGGCTCTACTACACGG...TGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCCGTGTAGTAGAGCCTaGCCCGCATGGCATGGCGCC +
Preference number: 4 (lower is better)
Translates to: PYAHSHQLDPSKTHSRQSPCSRA*PAWHGA
Trigger: GGCGCCATGCCATGCGGGGCAGGCTCTACTACACGG...AGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCGGCGGGTACAATATGTaGAGAGTGACCCCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: AILDGQLEWGRDGEPPGSGGYNM*RVTPGA
Trigger: TGCGCCTGGGGTCACTCTGCACATATTGTACCCGCC...GCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCAATGGCCTGGTAGACTaGGGCCATGTGGATCTGCGC +
Preference number: 4 (lower is better)
Translates to: AILDGQLEWGRDGEPPGSNGLVD*GHVDLR
Trigger: GCGCAGATCCACATGGCCGCAGTCTACCAGGCCATT...GCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp AGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAAGAGCCTGCCCCGCATaGCATGGCGCCTTTGATCAT +
Preference number: 4 (lower is better)
Translates to: RLCTGPQGGRCLHQELPKRACPA*HGAFDH
Trigger: ATGATCAAAGGCGCCATGCCATGCGGGGCAGGCTCT...TTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp GTGGAGGATAGGGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGAGAGCCTGCCCCGCATaGCATGGCGCCTTTGATCAT +
Preference number: 4 (lower is better)
Translates to: VEDRGLEQSLMGSWSGVGRACPA*HGAFDH
Trigger: ATGATCAAAGGCGCCATGCCATGCGGGGCAGGCTCT...CCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACATAGGTGTGCCGGGCTaGGGAGGAGGCGGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: PQQDTQQTVSCVLGFRYHIGVPG*GGGGGQ
Trigger: CTGACCCCCGCCTCCTCCCCAGCCCGGCACACCTAT...GTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCATAGGTGTGCCGGGCTaGGGAGGAGGCGGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: HSHQLDPSKTHSRQSLVSIGVPG*GGGGGQ
Trigger: CTGACCCCCGCCTCCTCCCCAGCCCGGCACACCTAT...GGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp AAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCAGGCTCTCCCCTTGAGAAGCCCCTGTCCCTaGGTTCCGCCTCCAAGGAAA +
Preference number: 4 (lower is better)
Translates to: KVCGRKLLTASPCQALPLRSPCP*VPPPRK
Trigger: TTTCCTTGGAGGCGGAACGCAGGGACAGGGGCTTCT...CAAGGGGAGAGCCTGGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCGGCGGGTACAATATGTaGAGAGTGACCCCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: LVSRLGSAQGHRVADVSIGGYNM*RVTPGA
Trigger: TGCGCCTGGGGTCACTCTGCACATATTGTACCCGCC...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCGCGGCCATGTGGATCTaGGCGTTGAGTTTGGTGGGC +
Preference number: 4 (lower is better)
Translates to: VSIRSCPKSVEGSSLLPPAAMWI*ALSLVG
Trigger: GCCCACCAAACTCAACGCGCAGATCCACATGGCCGC...GGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp TTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTAATGGCCTGGTAGACTaGGGCCATGTGGATCTGCGC +
Preference number: 4 (lower is better)
Translates to: LMGSWSGVGMVNPQEAVSNGLVD*GHVDLR
Trigger: GCGCAGATCCACATGGCCGCAGTCTACCAGGCCATT...ACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp ACCCCATCCTTCCCTTTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGTGGGAGTGGAGGTaGTGCTGCTTGGTTCCACAT +
Preference number: 4 (lower is better)
Translates to: TPSFPFRLVSRLGSAQGHRWEWR*CCLVPH
Trigger: ATGTGGAACCAAGCAGCACCACCTCCACTCCCACCT...GTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAAAGGGAAGGATGGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp GCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGAGGTGGGAGTGGAGGTaGTGCTGCTTGGTTCCACAT +
Preference number: 4 (lower is better)
Translates to: AQGHRVADVSIRSCPKSVRWEWR*CCLVPH
Trigger: ATGTGGAACCAAGCAGCACCACCTCCACTCCCACCT...CACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp GGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAACAGAGGGGAAGAACTaGGTCACGATTGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: GHRVADVSIRSCPKSVEGTEGKN*VTIGLC
Trigger: GCAGAGCCCAATCGTGACTCAGTTCTTCCCCTCTGT...TCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp ACCCCATCCTTCCCTTTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACACGCCATCACCACGCTaGAGACGTTCAACATCCATG +
Preference number: 4 (lower is better)
Translates to: TPSFPFRLVSRLGSAQGHTPSPR*RRSTSM
Trigger: CATGGATGTTGAACGTCTTCAGCGTGGTGATGGCGT...GTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAAAGGGAAGGATGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp GGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTCTTCTGGCTGGCTGTTaGTGGTGCCATAGGTGTGCC +
Preference number: 4 (lower is better)
Translates to: GVGMVNPQEAVSGLHPISLLAGC*WCHRCA
Trigger: GGCACACCTATGGCACCATCAACAGCCAGCCAGAAG...AGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp GGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGATTCCTGGAACTGGGCTaGGTCCAGCTCCCTTGCAAA +
Preference number: 4 (lower is better)
Translates to: GHRVADVSIRSCPKSVEGFLELG*VQLPCK
Trigger: TTTGCAAGGGAGCTGGACTCAGCCCAGTTCCAGGAA...TCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCTTCCTGGAACTGGGCTaGGTCCAGCTCCCTTGCAAA +
Preference number: 4 (lower is better)
Translates to: LVSRLGSAQGHRVADVSIFLELG*VQLPCK
Trigger: TTTGCAAGGGAGCTGGACTCAGCCCAGTTCCAGGAA...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCAGCAGGTCCAACATTTaGAGAAGCACAGGCGGGAAC +
Preference number: 4 (lower is better)
Translates to: AILDGQLEWGRDGEPPGSSRSNI*RSTGGN
Trigger: GTTCCCGCCTGTGCTTCTGCAAATGTTGGACCTGCT...GCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGAGCAGGTCCAACATTTaGAGAAGCACAGGCGGGAAC +
Preference number: 4 (lower is better)
Translates to: AQGHRVADVSIRSCPKSVSRSNI*RSTGGN
Trigger: GTTCCCGCCTGTGCTTCTGCAAATGTTGGACCTGCT...CACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCGGCGCATCAGCTCCATaGCTGTCCCAAGCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: HSHQLDPSKTHSRQSLVSGASAP*LSQAEP
Trigger: CGGCTCTGCTTGGGACAGGCATGGAGCTGATGCGCC...GGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCAGCGGCCATGTGGATCTaGGCGTTGAGTTTGGTGGGC +
Preference number: 4 (lower is better)
Translates to: PRKLSVGFILSLPVRTLSAAMWI*ALSLVG
Trigger: GCCCACCAAACTCAACGCGCAGATCCACATGGCCGC...TGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp ACCCCATCCTTCCCTTTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACTTCTTCTCCCTCTTCTaGCTGGCTGTTGATGGTGCC +
Preference number: 4 (lower is better)
Translates to: TPSFPFRLVSRLGSAQGHFFSLF*LAVDGA
Trigger: GGCACCATCAACAGCCAGCCAGAAGAGGGAGAAGAA...GTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAAAGGGAAGGATGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp ATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCATTTCCAGCCCTTCCTaGAACTGGGCTGAGTCCAGC +
Preference number: 4 (lower is better)
Translates to: IRSCPKSVEGSSLLPPPAISSPS*NWAESS
Trigger: GCTGGACTCAGCCCAGTTCCAGGAAGGGCTGGAAAT...GGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
3UTR CAA 72 bp CAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTaGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAAC +
Preference number: 4 (lower is better)
Translates to: QTAVEDRGLEQS*MGSWSGVGMVN
Trigger: GTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR TCA 90 bp GGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGATGGCATCCTGGAAGGTaGCAAAGATCAGGTCAAGCC +
Preference number: 4 (lower is better)
Translates to: GHRVADVSIRSCPKSVEGWHPGR*QRSGQA
Trigger: GGCTTGACCTGATCTTTGTCACCTTCCAGGATGCCA...TCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp GGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTACAGAGGGGAAGAACTaGGTCACGATTGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: GVGMVNPQEAVSGLHPISTEGKN*VTIGLC
Trigger: GCAGAGCCCAATCGTGACTCAGTTCTTCCCCTCTGT...AGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCGATCAGGTTCTGACTTaGTCTTGTCCAGTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: LVSRLGSAQGHRVADVSIDQVLT*SCPVGL
Trigger: GAGGCCCACTGGACAAGATCAAGTCAGAACCTGATC...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp ACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAACGCCATCACCACGCTaGAGACGTTCAACATCCATG +
Preference number: 4 (lower is better)
Translates to: TGPQGGRCLHQELPKVCGTPSPR*RRSTSM
Trigger: CATGGATGTTGAACGTCTTCAGCGTGGTGATGGCGT...TCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTATGTGGATCTGCGCGTTaGGTTTGGTGGGCGCGTAGG +
Preference number: 4 (lower is better)
Translates to: SQACSSCPLIRGRSTEFLCGSAR*VWWARR
Trigger: CCTACGCGCCCACCAAACTCAACGCGCAGATCCACA...TAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTTCTGGCTGGCTGTTaGTGGTGCCATAGGTGTGCC +
Preference number: 4 (lower is better)
Translates to: SRTHTLISLTPARHTADSLLAGC*WCHRCA
Trigger: GGCACACCTATGGCACCATCAACAGCCAGCCAGAAG...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp ATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCAACGCGAAGAGGCTATaGAGCCACAGGAACTTGCTC +
Preference number: 4 (lower is better)
Translates to: IRSCPKSVEGSSLLPPPANAKRL*SHRNLL
Trigger: GAGCAAGTTCCTGTGGCTGCATAGCCTCTTCGCGTT...GGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAACGCGAAGAGGCTATaGAGCCACAGGAACTTGCTC +
Preference number: 4 (lower is better)
Translates to: LVSRLGSAQGHRVADVSINAKRL*SHRNLL
Trigger: GAGCAAGTTCCTGTGGCTGCATAGCCTCTTCGCGTT...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp AGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTTTCTTCCTCAGGCTaGTCATACCGTTGGGCAATC +
Preference number: 4 (lower is better)
Translates to: RLCTGPQGGRCLHQELPKVSSSG*SYRWAI
Trigger: GATTGCCCAACGGTATGAGCAGCCTGAGGAAGAAAC...TTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp AGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGAGTGGAGGTGGTGCTaGTTGGTTCCACATCAAACA +
Preference number: 4 (lower is better)
Translates to: RLCTGPQGGRCLHQELPKEWRWC*LVPHQT
Trigger: TGTTTGATGTGGAACCAAGCAGCACCACCTCCACTC...TTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp AAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCAGGCTCTCCCCTTGTGGGAGTGGAGGTGGTaGTGCTTGGTTCCACATCAA +
Preference number: 4 (lower is better)
Translates to: KVCGRKLLTASPCQALPLWEWRW*CLVPHQ
Trigger: TTGATGTGGAACCAAGCAGCACCACCTCCACTCCCA...CAAGGGGAGAGCCTGGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp ACCCCATCCTTCCCTTTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGTGTCCTCGTGAAGTaGAGGCTCTTCTTTGGCACA +
Preference number: 4 (lower is better)
Translates to: TPSFPFRLVSRLGSAQGHSVLVK*RLFFGT
Trigger: TGTGCCAAAGAAGAGCCTCCACTTCACGAGGACACT...GTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAAAGGGAAGGATGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTAGAGCCTGCCCCGCATaGCATGGCGCCTTTGATCAT +
Preference number: 4 (lower is better)
Translates to: SRTHTLISLTPARHTADSRACPA*HGAFDH
Trigger: ATGATCAAAGGCGCCATGCCATGCGGGGCAGGCTCT...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCAGGCTCTCCCCTTTTCTTCTCCCTCTTCTaGCTGGCTGTTGATGGTGCC +
Preference number: 4 (lower is better)
Translates to: QSLWKEAPYCLPLPGSPLFFSLF*LAVDGA
Trigger: GGCACCATCAACAGCCAGCCAGAAGAGGGAGAAGAA...AAGGGGAGAGCCTGGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTTGATGGGCAGCATTTCCAGCCCTTCCTaGAACTGGGCTGAGTCCAGC +
Preference number: 4 (lower is better)
Translates to: SAQTAVEDRGLEQSLMGSISSPS*NWAESS
Trigger: GCTGGACTCAGCCCAGTTCCAGGAAGGGCTGGAAAT...GCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp GCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGTCATGGTTAGGCTGTTaGAGAACCAGGAAGAGAAGC +
Preference number: 4 (lower is better)
Translates to: AQGHRVADVSIRSCPKSVSWLGC*RTRKRS
Trigger: GCTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGA...CACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR TCA 90 bp GTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCTGGCATCCTGGAAGGTaGCAAAGATCAGGTCAAGCC +
Preference number: 4 (lower is better)
Translates to: VSIRSCPKSVEGSSLLPPWHPGR*QRSGQA
Trigger: GGCTTGACCTGATCTTTGTCACCTTCCAGGATGCCA...GGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTACAGGTGCTTCCAGATaGTGTCTTTGGGGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: SRTHTLISLTPARHTADSTGASR*CLWGEG
Trigger: CCCCTCACCCCAAAGACATCATCTGGAAGCACCTGT...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTACAGAGGGGAAGAACTaGGTCACGATTGGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: PYAHSHQLDPSKTHSRQSTEGKN*VTIGLC
Trigger: GCAGAGCCCAATCGTGACTCAGTTCTTCCCCTCTGT...AGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGATTGTGGATCTGCGCGTTaGGTTTGGTGGGCGCGTAGG +
Preference number: 4 (lower is better)
Translates to: QACSSCPLIRGRSTEFLDCGSAR*VWWARR
Trigger: CCTACGCGCCCACCAAACTCAACGCGCAGATCCACA...ATCTAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCAGAAGCCCCTGTCCCTaGGTTCCGCCTCCAAGGAAA +
Preference number: 4 (lower is better)
Translates to: HSHQLDPSKTHSRQSLVSRSPCP*VPPPRK
Trigger: TTTCCTTGGAGGCGGAACGCAGGGACAGGGGCTTCT...GGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp ACTTCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTGGCGGGTACAATATGTaGAGAGTGACCCCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: TSQACSSCPLIRGRSTEFGGYNM*RVTPGA
Trigger: TGCGCCTGGGGTCACTCTGCACATATTGTACCCGCC...AAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACTGCGGCCATGTGGATCTaGGCGTTGAGTTTGGTGGGC +
Preference number: 4 (lower is better)
Translates to: PSKTHSRQSLVSWALDTTAAMWI*ALSLVG
Trigger: GCCCACCAAACTCAACGCGCAGATCCACATGGCCGC...AGTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCGAGTGGAGGTGGTGCTaGTTGGTTCCACATCAAACA +
Preference number: 4 (lower is better)
Translates to: LVSRLGSAQGHRVADVSIEWRWC*LVPHQT
Trigger: TGTTTGATGTGGAACCAAGCAGCACCACCTCCACTC...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCTGGGAGTGGAGGTGGTaGTGCTTGGTTCCACATCAA +
Preference number: 4 (lower is better)
Translates to: VSIRSCPKSVEGSSLLPPWEWRW*CLVPHQ
Trigger: TTGATGTGGAACCAAGCAGCACCACCTCCACTCCCA...GGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCAACCTACTCGCAGGATaGAGAAGAAGAGCATCCAGA +
Preference number: 4 (lower is better)
Translates to: FRLVSRLGSAQGHRVADVNLLAG*RRRASR
Trigger: TCTGGATGCTCTTCTTCTCCATCCTGCGAGTAGGTT...GACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCTCATGGTTAGGCTGTTaGAGAACCAGGAAGAGAAGC +
Preference number: 4 (lower is better)
Translates to: LVSRLGSAQGHRVADVSISWLGC*RTRKRS
Trigger: GCTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGA...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR TCA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTTGGCATCCTGGAAGGTaGCAAAGATCAGGTCAAGCC +
Preference number: 4 (lower is better)
Translates to: SRTHTLISLTPARHTADSWHPGR*QRSGQA
Trigger: GGCTTGACCTGATCTTTGTCACCTTCCAGGATGCCA...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TTCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTACAGGTGCTTCCAGATaGTGTCTTTGGGGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: FPGLFQLPLDQRAKYRVSTGASR*CLWGEG
Trigger: CCCCTCACCCCAAAGACATCATCTGGAAGCACCTGT...AGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp ACTTCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTACAGGTGCTTCCAGATaGTGTCTTTGGGGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: TSQACSSCPLIRGRSTEFTGASR*CLWGEG
Trigger: CCCCTCACCCCAAAGACATCATCTGGAAGCACCTGT...AAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTTGATGGGCAGCTCTCAATGGGGCGGGTaGCATTGTATATGTCGATGG +
Preference number: 4 (lower is better)
Translates to: SAQTAVEDRGLEQSLMGSSQWGG*HCICRW
Trigger: CCATCGACATATACAATGTCACCCGCCCCATTGAGA...GCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp GTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCTCTCAATGGGGCGGGTaGCATTGTATATGTCGATGG +
Preference number: 4 (lower is better)
Translates to: VSIRSCPKSVEGSSLLPPSQWGG*HCICRW
Trigger: CCATCGACATATACAATGTCACCCGCCCCATTGAGA...GGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCAACGCCATCACCACGCTaGAGACGTTCAACATCCATG +
Preference number: 4 (lower is better)
Translates to: PRKLSVGFILSLPVRTLSTPSPR*RRSTSM
Trigger: CATGGATGTTGAACGTCTTCAGCGTGGTGATGGCGT...TGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGATAGAAGCCCCTGTCCCTaGGTTCCGCCTCCAAGGAAA +
Preference number: 4 (lower is better)
Translates to: QACSSCPLIRGRSTEFLDRSPCP*VPPPRK
Trigger: TTTCCTTGGAGGCGGAACGCAGGGACAGGGGCTTCT...ATCTAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp CCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCAAGCAGGTCCAACATTTaGAGAAGCACAGGCGGGAAC +
Preference number: 4 (lower is better)
Translates to: PRKLSVGFILSLPVRTLSSRSNI*RSTGGN
Trigger: GTTCCCGCCTGTGCTTCTGCAAATGTTGGACCTGCT...TGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CCCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCGAGTGGAGGTGGTGCTaGTTGGTTCCACATCAAACA +
Preference number: 4 (lower is better)
Translates to: PQEAVSGLHPISSRTHTLEWRWC*LVPHQT
Trigger: TGTTTGATGTGGAACCAAGCAGCACCACCTCCACTC...GAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGCAGAAATGGACTCTaGTCACCACACATCCAGGAT +
Preference number: 4 (lower is better)
Translates to: LVSRLGSAQGHRVADVSISRNGL*SPHIQD
Trigger: ATCCTGGATGTGTGGTGACCAGAGTCCATTTCTGCT...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp GCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCTTTCTGGCTCTGATTTaGATAAGAAGAGGCGGGTAC +
Preference number: 4 (lower is better)
Translates to: AILDGQLEWGRDGEPPGSFLALI*IRRGGY
Trigger: GTACCCGCCTCTTCTTATCCAAATCAGAGCCAGAAA...GCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTGAAGAGCCCCAAGAGTaGGGCAAAAATGGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: SRTHTLISLTPARHTADSEEPQE*GKNGLV
Trigger: TACCAGGCCATTTTTGCCCCACTCTTGGGGCTCTTC...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTTGATGGGCAGCAATAAGGTGATGCTGTaGAGGGAACCTACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: SAQTAVEDRGLEQSLMGSNKVML*REPTRR
Trigger: CCTGCGAGTAGGTTCCCTCCACAGCATCACCTTATT...GCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACGATCAGGTTCTGACTTaGTCTTGTCCAGTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: PQQDTQQTVSCVLGFRYHDQVLT*SCPVGL
Trigger: GAGGCCCACTGGACAAGATCAAGTCAGAACCTGATC...GTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCAGCATTTGTGCACTATaGTCAGGTTCTGACTTGATC +
Preference number: 4 (lower is better)
Translates to: FRLVSRLGSAQGHRVADVSICAL*SGSDLI
Trigger: GATCAAGTCAGAACCTGATCATAGTGCACAAATGCT...GACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGATTTCCTGGAACTGGGCTaGGTCCAGCTCCCTTGCAAA +
Preference number: 4 (lower is better)
Translates to: QACSSCPLIRGRSTEFLDFLELG*VQLPCK
Trigger: TTTGCAAGGGAGCTGGACTCAGCCCAGTTCCAGGAA...ATCTAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp TGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCATCAGCTTGACGTTGTGTATCAGCAGTaGCAGCCTCCCGTAGTCCCA +
Preference number: 4 (lower is better)
Translates to: CQWASSYLFPYAHSHQLDVVYQQ*QPPVVP
Trigger: TGGGACTACGGGAGGCTGGCACTGCTGATACACAAC...GTCAAGCTGATGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR GCA 90 bp TTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCGTAGTTGATGAAGAATaGACCATTGTCTGGGAGGAA +
Preference number: 4 (lower is better)
Translates to: FRLVSRLGSAQGHRVADVVVDEE*TIVWEE
Trigger: TTCCTCCCAGACAATGGTGCATTCTTCATCAACTAC...GACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp ATACCTTTTTCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTTGAATGGCCTGGTAGACTaGGGCCATGTGGATCTGCGC +
Preference number: 4 (lower is better)
Translates to: IPFSAQTAVEDRGLEQSLNGLVD*GHVDLR
Trigger: GCGCAGATCCACATGGCCGCAGTCTACCAGGCCATT...CAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGAAAAAGGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGAGTGGAGGTGGTaGTGCTTGGTTCCACATCAA +
Preference number: 4 (lower is better)
Translates to: HSHQLDPSKTHSRQSLVSWEWRW*CLVPHQ
Trigger: TTGATGTGGAACCAAGCAGCACCACCTCCACTCCCA...GGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTTACTCTCGTCCAAACTaGAAATCTGTGGCTTGGTTC +
Preference number: 4 (lower is better)
Translates to: LMGSWSGVGMVNPQEAVSYSRPN*KSVAWF
Trigger: GAACCAAGCCACAGATTTCCAGTTTGGACGAGAGTA...ACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACGAAGAGCCCCAAGAGTaGGGCAAAAATGGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: PQQDTQQTVSCVLGFRYHEEPQE*GKNGLV
Trigger: TACCAGGCCATTTTTGCCCCACTCTTGGGGCTCTTC...GTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGAAGAGCCCCAAGAGTaGGGCAAAAATGGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: SQACSSCPLIRGRSTEFLEEPQE*GKNGLV
Trigger: TACCAGGCCATTTTTGCCCCACTCTTGGGGCTCTTC...TAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTAATAAGGTGATGCTGTaGAGGGAACCTACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: SRTHTLISLTPARHTADSNKVML*REPTRR
Trigger: CCTGCGAGTAGGTTCCCTCCACAGCATCACCTTATT...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGATAGGTGGGAGTGGAGGTaGTGCTGCTTGGTTCCACAT +
Preference number: 4 (lower is better)
Translates to: QACSSCPLIRGRSTEFLDRWEWR*CCLVPH
Trigger: ATGTGGAACCAAGCAGCACCACCTCCACTCCCACCT...ATCTAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTTCATGGTTAGGCTGTTaGAGAACCAGGAAGAGAAGC +
Preference number: 4 (lower is better)
Translates to: SRTHTLISLTPARHTADSSWLGC*RTRKRS
Trigger: GCTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGA...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR TCA 90 bp CCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACTCCGCATCTACCTCCTTaGAGCAGGTCCAACATTTGC +
Preference number: 4 (lower is better)
Translates to: PSKTHSRQSLVSWALDTTPHLPP*SRSNIC
Trigger: GCAAATGTTGGACCTGCTTCAAGGAGGTAGATGCGG...AGTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTCTCAATGGGGCGGGTaGCATTGTATATGTCGATGG +
Preference number: 4 (lower is better)
Translates to: HSHQLDPSKTHSRQSLVSSQWGG*HCICRW
Trigger: CCATCGACATATACAATGTCACCCGCCCCATTGAGA...GGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCATCAGCTTGACGATCAGGTTCTGACTTaGTCTTGTCCAGTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: CQWASSYLFPYAHSHQLDDQVLT*SCPVGL
Trigger: GAGGCCCACTGGACAAGATCAAGTCAGAACCTGATC...GTCAAGCTGATGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp ATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCAGCATTTGTGCACTATaGTCAGGTTCTGACTTGATC +
Preference number: 4 (lower is better)
Translates to: IRSCPKSVEGSSLLPPPASICAL*SGSDLI
Trigger: GATCAAGTCAGAACCTGATCATAGTGCACAAATGCT...GGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp TCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTTGATGGGCAGCTGGCTTGGTTCTTTCTaGTGTGAACTCTTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: SAQTAVEDRGLEQSLMGSWLGSF*CELFLA
Trigger: AGCCAGAAAGAGTTCACATCAGAAAGAACCAAGCCA...GCTGCCCATCAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp AGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTTCTGGCTCTGATTTaGATAAGAAGAGGCGGGTAC +
Preference number: 4 (lower is better)
Translates to: RVADVSIRSCPKSVEGSSFLALI*IRRGGY
Trigger: GTACCCGCCTCTTCTTATCCAAATCAGAGCCAGAAA...GGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp AGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTACTCTCGTCCAAACTaGAAATCTGTGGCTTGGTTC +
Preference number: 4 (lower is better)
Translates to: RVADVSIRSCPKSVEGSSYSRPN*KSVAWF
Trigger: GAACCAAGCCACAGATTTCCAGTTTGGACGAGAGTA...GGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTAACCTACTCGCAGGATaGAGAAGAAGAGCATCCAGA +
Preference number: 4 (lower is better)
Translates to: SRTHTLISLTPARHTADSNLLAG*RRRASR
Trigger: TCTGGATGCTCTTCTTCTCCATCCTGCGAGTAGGTT...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACTTTCTTCTCCCTCTTCTaGCTGGCTGTTGATGGTGCC +
Preference number: 4 (lower is better)
Translates to: PSKTHSRQSLVSWALDTTFFSLF*LAVDGA
Trigger: GGCACCATCAACAGCCAGCCAGAAGAGGGAGAAGAA...AGTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCATGGCTTGGTTCTTTCTaGTGTGAACTCTTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: PRKLSVGFILSLPVRTLSWLGSF*CELFLA
Trigger: AGCCAGAAAGAGTTCACATCAGAAAGAACCAAGCCA...TGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp ATACCTTTTTCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAATCCTTGAACGCGAAGAGGCTATaGAGCCACAGGAACTTGCTC +
Preference number: 4 (lower is better)
Translates to: IPFSAQTAVEDRGLEQSLNAKRL*SHRNLL
Trigger: GAGCAAGTTCCTGTGGCTGCATAGCCTCTTCGCGTT...CAAGGATTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGAAAAAGGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp AGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCGTAGTTGATGAAGAATaGACCATTGTCTGGGAGGAA +
Preference number: 4 (lower is better)
Translates to: RVADVSIRSCPKSVEGSSVVDEE*TIVWEE
Trigger: TTCCTCCCAGACAATGGTGCATTCTTCATCAACTAC...GGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGATGTTTCTTCCTCAGGCTaGTCATACCGTTGGGCAATC +
Preference number: 4 (lower is better)
Translates to: QACSSCPLIRGRSTEFLDVSSSG*SYRWAI
Trigger: GATTGCCCAACGGTATGAGCAGCCTGAGGAAGAAAC...ATCTAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACTAGTGTCCTCGTGAAGTaGAGGCTCTTCTTTGGCACA +
Preference number: 4 (lower is better)
Translates to: PSKTHSRQSLVSWALDTTSVLVK*RLFFGT
Trigger: TGTGCCAAAGAAGAGCCTCCACTTCACGAGGACACT...AGTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp TCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAAGCAGAAATGGACTCTaGTCACCACACATCCAGGAT +
Preference number: 4 (lower is better)
Translates to: SQACSSCPLIRGRSTEFLSRNGL*SPHIQD
Trigger: ATCCTGGATGTGTGGTGACCAGAGTCCATTTCTGCT...TAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTCAAGCCTCTTCAGCTaGACACGATTAAGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: HSHQLDPSKTHSRQSLVSSSLFS*TRLSSA
Trigger: TGCTGAGCTTAATCGTGTCCAGCTGAAGAGGCTTGA...GGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACTCAAGCCTCTTCAGCTaGACACGATTAAGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: PQQDTQQTVSCVLGFRYHSSLFS*TRLSSA
Trigger: TGCTGAGCTTAATCGTGTCCAGCTGAAGAGGCTTGA...GTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTTTTCTGGCTCTGATTTaGATAAGAAGAGGCGGGTAC +
Preference number: 4 (lower is better)
Translates to: PYAHSHQLDPSKTHSRQSFLALI*IRRGGY
Trigger: GTACCCGCCTCTTCTTATCCAAATCAGAGCCAGAAA...AGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCATACTCTCGTCCAAACTaGAAATCTGTGGCTTGGTTC +
Preference number: 4 (lower is better)
Translates to: PRKLSVGFILSLPVRTLSYSRPN*KSVAWF
Trigger: GAACCAAGCCACAGATTTCCAGTTTGGACGAGAGTA...TGAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CATGCATGTAGGTCTCCTTTAATGAGCCTGAGTAGCTGTCCCAGCTACCATGATATTTCCAGCCCTTCCTaGAACTGGGCTGAGTCCAGC +
Preference number: 4 (lower is better)
Translates to: HACRSPLMSLSSCPSYHDISSPS*NWAESS
Trigger: GCTGGACTCAGCCCAGTTCCAGGAAGGGCTGGAAAT...ATCATGGTAGCTGGGACAGCTACTCAGGCTCATTAAAGGAGACCTACATGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp GTGCCTTGTTCACAAGGCCCAGTACACATACCTTTTTCTGCTCAGACTGCAGTGGTTTCTTCCTCAGGCTaGTCATACCGTTGGGCAATC +
Preference number: 4 (lower is better)
Translates to: VPCSQGPVHIPFSAQTAVVSSSG*SYRWAI
Trigger: GATTGCCCAACGGTATGAGCAGCCTGAGGAAGAAAC...CACTGCAGTCTGAGCAGAAAAAGGTATGTGTACTGGGCCTTGTGAACAAGGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp GTACACATACCTTTTTCTGCTCAGACTGCAGTGGAGGATAGGGGTCTGGAGCAAAGTGTCCTCGTGAAGTaGAGGCTCTTCTTTGGCACA +
Preference number: 4 (lower is better)
Translates to: VHIPFSAQTAVEDRGLEQSVLVK*RLFFGT
Trigger: TGTGCCAAAGAAGAGCCTCCACTTCACGAGGACACT...TTGCTCCAGACCCCTATCCTCCACTGCAGTCTGAGCAGAAAAAGGTATGTGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CCA 90 bp CAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGATTCAAGCCTCTTCAGCTaGACACGATTAAGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: QACSSCPLIRGRSTEFLDSSLFS*TRLSSA
Trigger: TGCTGAGCTTAATCGTGTCCAGCTGAAGAGGCTTGA...ATCTAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CTTCATGCACAGATACAGCAGCCCAAACGGGACAATGATAGGGCAAGTGATGCTTCATGGTTAGGCTGTTaGAGAACCAGGAAGAGAAGC +
Preference number: 4 (lower is better)
Translates to: LHAQIQQPKRDNDRASDASWLGC*RTRKRS
Trigger: GCTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGA...AGCATCACTTGCCCTATCATTGTCCCGTTTGGGCTGCTGTATCTGTGCATGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
CDS-3UTR CCA 90 bp CATGCATGTAGGTCTCCTTTAATGAGCCTGAGTAGCTGTCCCAGCTACCATGATAATAAGGTGATGCTGTaGAGGGAACCTACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: HACRSPLMSLSSCPSYHDNKVML*REPTRR
Trigger: CCTGCGAGTAGGTTCCCTCCACAGCATCACCTTATT...ATCATGGTAGCTGGGACAGCTACTCAGGCTCATTAAAGGAGACCTACATGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp CAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAGATAGCATTTGTGCACTATaGTCAGGTTCTGACTTGATC +
Preference number: 4 (lower is better)
Translates to: QACSSCPLIRGRSTEFLDSICAL*SGSDLI
Trigger: GATCAAGTCAGAACCTGATCATAGTGCACAAATGCT...ATCTAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR TCA 90 bp GTGCCTTGTTCACAAGGCCCAGTACACATACCTTTTTCTGCTCAGACTGCAGTGTGGCTTGGTTCTTTCTaGTGTGAACTCTTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: VPCSQGPVHIPFSAQTAVWLGSF*CELFLA
Trigger: AGCCAGAAAGAGTTCACATCAGAAAGAACCAAGCCA...CACTGCAGTCTGAGCAGAAAAAGGTATGTGTACTGGGCCTTGTGAACAAGGCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR GCA 90 bp CATGCATGTAGGTCTCCTTTAATGAGCCTGAGTAGCTGTCCCAGCTACCATGATGTAGTTGATGAAGAATaGACCATTGTCTGGGAGGAA +
Preference number: 4 (lower is better)
Translates to: HACRSPLMSLSSCPSYHDVVDEE*TIVWEE
Trigger: TTCCTCCCAGACAATGGTGCATTCTTCATCAACTAC...ATCATGGTAGCTGGGACAGCTACTCAGGCTCATTAAAGGAGACCTACATGCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp CCCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCCTGAGTCCAGCTCCCTaGCAAAGCCCCTCAGACCGC +
Preference number: 5 (lower is better)
Translates to: PQEAVSGLHPISSRTHTLLSPAP*QSPSDR
Trigger: GCGGTCTGAGGGGCTTTGCAAGGGAGCTGGACTCAG...GAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp GCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAAGTCTGTGTGGAGGTGGTGCTGCTaGGTTCCACATCAAACACAG +
Preference number: 5 (lower is better)
Translates to: AQGHRVADVSIRSCPKSVWRWCC*VPHQTQ
Trigger: CTGTGTTTGATGTGGAACCAAGCAGCACCACCTCCA...CACAGACTTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp CCCCAGCAAGACACACAGCAGACAGTCTCTTGTGTCCTGGGCTTTAGATACCACCTGAGTCCAGCTCCCTaGCAAAGCCCCTCAGACCGC +
Preference number: 5 (lower is better)
Translates to: PQQDTQQTVSCVLGFRYHLSPAP*QSPSDR
Trigger: GCGGTCTGAGGGGCTTTGCAAGGGAGCTGGACTCAG...GTGGTATCTAAAGCCCAGGACACAAGAGACTGTCTGCTGTGTGTCTTGCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp ACTTCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTGAGTCCAGCTCCCTaGCAAAGCCCCTCAGACCGC +
Preference number: 5 (lower is better)
Translates to: TSQACSSCPLIRGRSTEFLSPAP*QSPSDR
Trigger: GCGGTCTGAGGGGCTTTGCAAGGGAGCTGGACTCAG...AAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS CCA 90 bp CTGGCTCCTGTAGCACGGTGGCCACGTACAGAAGGGAGGTGGGAGTaGAGGTGGTGCTGCTTGGTTCCACATCAAACACAGTCTCTGTTT +
Preference number: 5 (lower is better)
Translates to: LAPVARWPRTEGRWE*RWCCLVPHQTQSLF
Trigger: AAACAGAGACTGTGTTTGATGTGGAACCAAGCAGCACCACCTCCACTCCCACCTCCCTTCTGTACGTGGCCACCGTGCTACAGGAGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp ACCCCATCCTTCCCTTTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACTGCAGCCACAGGAACTaGCTCTCTGTAGAGACATTG +
Preference number: 5 (lower is better)
Translates to: TPSFPFRLVSRLGSAQGHCSHRN*LSVETL
Trigger: CAATGTCTCTACAGAGAGCAAGTTCCTGTGGCTGCA...GTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAAAGGGAAGGATGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp CAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCAGGCTCTCCCCTTAAGCAGGTCCAACATTaGCAGAAGCACAGGCGGGAA +
Preference number: 5 (lower is better)
Translates to: QSLWKEAPYCLPLPGSPLKQVQH*QKHRRE
Trigger: TTCCCGCCTGTGCTTCTGCAAATGTTGGACCTGCTT...AAGGGGAGAGCCTGGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp TTCCGGCTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCGCATCTACCTCCTaGAAGCAGGTCCAACATTTG +
Preference number: 5 (lower is better)
Translates to: FRLVSRLGSAQGHRVADVSASTS*KQVQHL
Trigger: CAAATGTTGGACCTGCTTCAAGGAGGTAGATGCGGA...GACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAGCCGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp GCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCTACTCTGTAGAGACATaGACAATGGTGGTCCGGCCA +
Preference number: 5 (lower is better)
Translates to: AILDGQLEWGRDGEPPGSYSVET*TMVVRP
Trigger: TGGCCGGACCACCATTGTCAATGTCTCTACAGAGTA...GCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154801.8
CDS-3UTR CAA 90 bp AGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCAGGAGCTGCCCAAACTCATGGTTAGGCTGTaGAAGAACCAGGAAGAGAAG +
Preference number: 5 (lower is better)
Translates to: RLCTGPQGGRCLHQELPKLMVRL*KNQEEK
Trigger: CTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGAG...TTTGGGCAGCTCCTGATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR CAA 90 bp GGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCTCATGGTTAGGCTGTaGAAGAACCAGGAAGAGAAG +
Preference number: 5 (lower is better)
Translates to: GSGAILDGQLEWGRDGEPLMVRL*KNQEEK
Trigger: CTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGAG...GGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR CAA 90 bp TTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTTGCAGCCACAGGAACTaGCTCTCTGTAGAGACATTG +
Preference number: 5 (lower is better)
Translates to: LMGSWSGVGMVNPQEAVSCSHRN*LSVETL
Trigger: CAATGTCTCTACAGAGAGCAAGTTCCTGTGGCTGCA...ACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp GTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCAAGCAGGTCCAACATTaGCAGAAGCACAGGCGGGAA +
Preference number: 5 (lower is better)
Translates to: VSIRSCPKSVEGSSLLPPKQVQH*QKHRRE
Trigger: TTCCCGCCTGTGCTTCTGCAAATGTTGGACCTGCTT...GGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp TTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCCAGGAAGCTGTCAGTTCCGCATCTACCTCCTaGAAGCAGGTCCAACATTTG +
Preference number: 5 (lower is better)
Translates to: LMGSWSGVGMVNPQEAVSSASTS*KQVQHL
Trigger: CAAATGTTGGACCTGCTTCAAGGAGGTAGATGCGGA...ACTGACAGCTTCCTGGGGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp ATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCCCTGCCATGGGGCGGGTGACATaGTATATGTCGATGGTGTTG +
Preference number: 5 (lower is better)
Translates to: IRSCPKSVEGSSLLPPPAMGRVT*YMSMVL
Trigger: CAACACCATCGACATATACAATGTCACCCGCCCCAT...GGCAGGGGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp CTGGTCAGCAGATTAGGCTCTGCACAGGGCCACAGGGTGGCAGATGTCTCCATCATGGGGCGGGTGACATaGTATATGTCGATGGTGTTG +
Preference number: 5 (lower is better)
Translates to: LVSRLGSAQGHRVADVSIMGRVT*YMSMVL
Trigger: CAACACCATCGACATATACAATGTCACCCGCCCCAT...GATGGAGACATCTGCCACCCTGTGGCCCTGTGCAGAGCCTAATCTGCTGACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp CCCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCTGGAGGTGGTGCTGCTaGGTTCCACATCAAACACAG +
Preference number: 5 (lower is better)
Translates to: PQEAVSGLHPISSRTHTLWRWCC*VPHQTQ
Trigger: CTGTGTTTGATGTGGAACCAAGCAGCACCACCTCCA...GAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTCTCTGTAGAGACATaGACAATGGTGGTCCGGCCA +
Preference number: 5 (lower is better)
Translates to: SRTHTLISLTPARHTADSLSVET*TMVVRP
Trigger: TGGCCGGACCACCATTGTCAATGTCTCTACAGAGAG...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp GTCTCCATCAGGAGCTGCCCAAAGTCTGTGGAAGGAAGCTCCTTACTGCCTCCCATGGGGCGGGTGACATaGTATATGTCGATGGTGTTG +
Preference number: 5 (lower is better)
Translates to: VSIRSCPKSVEGSSLLPPMGRVT*YMSMVL
Trigger: CAACACCATCGACATATACAATGTCACCCGCCCCAT...GGGAGGCAGTAAGGAGCTTCCTTCCACAGACTTTGGGCAGCTCCTGATGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp GGGTCTGGAGCAATCCTTGATGGGCAGCTGGAGTGGGGTAGGGATGGTGAACCCCTGGAAATCTGTGGCTaGGTTCTTTCTGATGTGAAC +
Preference number: 5 (lower is better)
Translates to: GSGAILDGQLEWGRDGEPLEICG*VLSDVN
Trigger: GTTCACATCAGAAAGAACCAAGCCACAGATTTCCAG...GGGTTCACCATCCCTACCCCACTCCAGCTGCCCATCAAGGATTGCTCCAGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTTGGAGGTGGTGCTGCTaGGTTCCACATCAAACACAG +
Preference number: 5 (lower is better)
Translates to: SRTHTLISLTPARHTADSWRWCC*VPHQTQ
Trigger: CTGTGTTTGATGTGGAACCAAGCAGCACCACCTCCA...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp CCCCAGGAAGCTGTCAGTGGGCTTCATCCTATCTCTTCCCGTACGCACACTCTCCTCATGGTTAGGCTGTaGAAGAACCAGGAAGAGAAG +
Preference number: 5 (lower is better)
Translates to: PQEAVSGLHPISSRTHTLLMVRL*KNQEEK
Trigger: CTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGAG...GAGAGTGTGCGTACGGGAAGAGATAGGATGAAGCCCACTGACAGCTTCCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR CAA 90 bp CCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTTGCAGCCACAGGAACTaGCTCTCTGTAGAGACATTG +
Preference number: 5 (lower is better)
Translates to: PYAHSHQLDPSKTHSRQSCSHRN*LSVETL
Trigger: CAATGTCTCTACAGAGAGCAAGTTCCTGTGGCTGCA...AGACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp TCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTAAAGCAGGTCCAACATTaGCAGAAGCACAGGCGGGAA +
Preference number: 5 (lower is better)
Translates to: SQACSSCPLIRGRSTEFLKQVQH*QKHRRE
Trigger: TTCCCGCCTGTGCTTCTGCAAATGTTGGACCTGCTT...TAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp ACTTCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTTCCGCATCTACCTCCTaGAAGCAGGTCCAACATTTG +
Preference number: 5 (lower is better)
Translates to: TSQACSSCPLIRGRSTEFSASTS*KQVQHL
Trigger: CAAATGTTGGACCTGCTTCAAGGAGGTAGATGCGGA...AAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp TCCCAGGCTTGTTCCAGCTGCCCCTTGATCAGAGGGCGAAGTACAGAGTTTCTACTCATGGTTAGGCTGTaGAAGAACCAGGAAGAGAAG +
Preference number: 5 (lower is better)
Translates to: SQACSSCPLIRGRSTEFLLMVRL*KNQEEK
Trigger: CTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGAG...TAGAAACTCTGTACTTCGCCCTCTGATCAAGGGGCAGCTGGAACAAGCCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS-3UTR CAA 90 bp TCCCGTACGCACACTCTCATCAGCTTGACCCCAGCAAGACACACAGCAGACAGTCTGGAAATCTGTGGCTaGGTTCTTTCTGATGTGAAC +
Preference number: 5 (lower is better)
Translates to: SRTHTLISLTPARHTADSLEICG*VLSDVN
Trigger: GTTCACATCAGAAAGAACCAAGCCACAGATTTCCAG...ACTGTCTGCTGTGTGTCTTGCTGGGGTCAAGCTGATGAGAGTGTGCGTACGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS GCA 90 bp ATGAAGGCAAGGTTGATGAGGAAGTACAAGAACGCGAAGAGGCTATaGAGCCACAGGAACTTGCTCTCTGTAGAGACATTGACAATGGTG +
Preference number: 5 (lower is better)
Translates to: MKARLMRKYKNAKRL*SHRNLLSVETLTMV
Trigger: CACCATTGTCAATGTCTCTACAGAGAGCAAGTTCCTGTGGCTGCATAGCCTCTTCGCGTTCTTGTACTTCCTCATCAACCTTGCCTTCAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS-3UTR CAA 90 bp CATGCATGTAGGTCTCCTTTAATGAGCCTGAGTAGCTGTCCCAGCTACCATGATCTGGAAATCTGTGGCTaGGTTCTTTCTGATGTGAAC +
Preference number: 5 (lower is better)
Translates to: HACRSPLMSLSSCPSYHDLEICG*VLSDVN
Trigger: GTTCACATCAGAAAGAACCAAGCCACAGATTTCCAG...ATCATGGTAGCTGGGACAGCTACTCAGGCTCATTAAAGGAGACCTACATGCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS CCA 72 bp CGGGGGTCAGGTTCAGCTCTGGCTCCTGTAGCACGGTaGCCACGTACAGAAGGGAGGTGGGAGTGGAGGTGG +
Preference number: 6 (lower is better)
Translates to: RGSGSALAPVAR*PRTEGRWEWRW
Trigger: CCACCTCCACTCCCACCTCCCTTCTGTACGTGGCCACCGTGCTACAGGAGCCAGAGCTGAACCTGACCCCCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
CDS CAA 90 bp TCCCCGCATTTGTTGATCAGGTCCCGGTCCCTCATGGTTAGGCTGTaGAAGAACCAGGAAGAGAAGCCCCTGTCCCTGCGTTCCGCCTCC +
Preference number: 6 (lower is better)
Translates to: SPHLLIRSRSLMVRL*KNQEEKPLSLRSAS
Trigger: GGAGGCGGAACGCAGGGACAGGGGCTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGAGGGACCGGGACCTGATCAACAAATGCGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS CAA 72 bp TTGTTGATCAGGTCCCGGTCCCTCATGGTTAGGCTGTaGAAGAACCAGGAAGAGAAGCCCCTGTCCCTGCGT +
Preference number: 6 (lower is better)
Translates to: LLIRSRSLMVRL*KNQEEKPLSLR
Trigger: ACGCAGGGACAGGGGCTTCTCTTCCTGGTTCTTCAACAGCCTAACCATGAGGGACCGGGACCTGATCAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
CDS TCA 72 bp CTCCGCGACTGGAAGCACTCATTCACCGTCATGTTATaGAACTTCTGGTCCATGCTGTCTGGAAAGGCAGAC +
Preference number: 6 (lower is better)
Translates to: LRDWKHSFTVML*NFWSMLSGKAD
Trigger: GTCTGCCTTTCCAGACAGCATGGACCAGAAGTTTCATAACATGACGGTGAATGAGTGCTTCCAGTCGCGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8
ENSMUST00000154801.8
ENSMUST00000156162.8
CDS GCA 72 bp AGGTTGATGAGGAAGTACAAGAACGCGAAGAGGCTATaGAGCCACAGGAACTTGCTCTCTGTAGAGACATTG +
Preference number: 6 (lower is better)
Translates to: RLMRKYKNAKRL*SHRNLLSVETL
Trigger: CAATGTCTCTACAGAGAGCAAGTTCCTGTGGCTGCATAGCCTCTTCGCGTTCTTGTACTTCCTCATCAACCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110187.8
ENSMUST00000131878.2
ENSMUST00000146292.8