Pregenerated sensors for TMEM54 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028786Ensembl transcript IDs: ENSMUST00000030575.15, ENSMUST00000030577.11, ENSMUST00000106064.10, ENSMUST00000148979.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTaGAAGAACTGGCGCAGCTCAATAGGTCATGAGCATCCAGGGGCT | + |
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Preference number: 1 (lower is better) Translates to: RASVAMALLKCQRVS*KNWRSSIGHEHPGA Trigger: AGCCCCTGGATGCTCATGACCTATTGAGCTGCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR CCA 90 bp | CCCACTAAACTTCCATGGCTGGTTGGGCACGGGTCAATACAGGTGTaGTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGG | + |
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Preference number: 1 (lower is better) Translates to: PTKLPWLVGHGSIQV*SRASVAMALLKCQR Trigger: CCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTATTGACCCGTGCCCAACCAGCCATGGAAGTTTAGTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| 3UTR CCA 90 bp | TTTCATGGGCGTGCTCTAGGAATCCTGGATCCCACTAAACTTCCATaGCTGGTTGGGCACGGGTCAATACAGGTGTGGTCACGTGCCTCA | + |
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Preference number: 1 (lower is better) Translates to: FHGRALGILDPTKLP*LVGHGSIQVWSRAS Trigger: TGAGGCACGTGACCACACCTGTATTGACCCGTGCCCAACCAGCCATGGAAGTTTAGTGGGATCCAGGATTCCTAGAGCACGCCCATGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| 3UTR-3UTR CCA 90 bp | GTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAAGCATCCAGGGGCTCTaGGCTTGCTTGTATCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: VTCLSSHGAAEVSEGQLQSIQGL*ACLYLQ Trigger: CTGCAGATACAAGCAAGCCCAGAGCCCCTGGATGCT...TTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR-3UTR CCA 90 bp | TCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCGCGCAGACACAGGAACTTaGTTGTTTCCCTCTGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: SVAMALLKCQRVSCKNWRADTGT*LFPSAW Trigger: CCAGGCAGAGGGAAACAACCAAGTTCCTGTGTCTGC...GCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR-3UTR GCA 90 bp | TCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTTTGGTTGTTTCCCTCTaGCTGGGGTCTCTATCTTCA | + |
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Preference number: 2 (lower is better) Translates to: SCFSALYSVARGGRSKPSLVVSL*LGSLSS Trigger: TGAAGATAGAGACCCCAGGCAGAGGGAAACAACCAA...AGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030575.15 |
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| 3UTR-3UTR GCA 90 bp | TGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGGGCTTGCTTGTATCTaGAGACACAGGAACTTGGTT | + |
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Preference number: 2 (lower is better) Translates to: CLSSHGAAEVSEGQLQELGLACI*RHRNLV Trigger: AACCAAGTTCCTGTGTCTGCAGATACAAGCAAGCCC...CAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR-3UTR GCA 90 bp | CAAAATAAAGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCCAGGGGCTCTGGGCTTaGTTGTATCTGCAGACACAG | + |
|
Preference number: 2 (lower is better) Translates to: QNKVLFQCIVLGGQGRALQGLWA*LYLQTQ Trigger: CTGTGTCTGCAGATACAAGCAAGCCCAGAGCCCCTG...GAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACTTTATTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030575.15 |
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| 3UTR-3UTR GCA 90 bp | CTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCGCAGCTCAATAGGTCATGAGGGGCTTGCTTGTATCTaGAGACACAGGAACTTGGTT | + |
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Preference number: 2 (lower is better) Translates to: LKCQRVSCKNWRSSIGHEGLACI*RHRNLV Trigger: AACCAAGTTCCTGTGTCTGCAGATACAAGCAAGCCC...CTCATGACCTATTGAGCTGCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR-3UTR CAA 90 bp | GTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCACGTCCCGACACAGGAACTTGGTaGTTTCCCTCTGCCTGGGGT | + |
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Preference number: 3 (lower is better) Translates to: VHCTRWPGEGAQSPLPRPDTGTW*FPSAWG Trigger: ACCCCAGGCAGAGGGAAACAACCAAGTTCCTGTGTC...GGGACGTGGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030575.15 |
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| 3UTR-3UTR CAA 90 bp | GTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCGCAGCCCAGGGGCTCTGGGCTaGCTTGTATCTGCAGACACA | + |
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Preference number: 3 (lower is better) Translates to: VAMALLKCQRVSCKNWRSPGALG*LVSADT Trigger: TGTGTCTGCAGATACAAGCAAGCCCAGAGCCCCTGG...GCTGCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR GCA 72 bp | GCTGGTTGGGCACGGGTCAATACAGGTGTGGTCACGTaGCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: AGWARVNTGVVT*LSSHGAAEVSE Trigger: CTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTATTGACCCGTGCCCAACCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| 3UTR CCA 72 bp | CTTCCATGGCTGGTTGGGCACGGGTCAATACAGGTGTaGTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: LPWLVGHGSIQV*SRASVAMALLK Trigger: CTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTATTGACCCGTGCCCAACCAGCCATGGAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| 3UTR CCA 72 bp | GCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTaGCGCAGCTCAATAGGTCATGAGCATCCAGGGGCT | + |
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Preference number: 3 (lower is better) Translates to: ALLKCQRVSCKN*RSSIGHEHPGA Trigger: AGCCCCTGGATGCTCATGACCTATTGAGCTGCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR-3UTR CAA 90 bp | TGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGACACAGGAACTTGGTaGTTTCCCTCTGCCTGGGGT | + |
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Preference number: 3 (lower is better) Translates to: CLSSHGAAEVSEGQLQELDTGTW*FPSAWG Trigger: ACCCCAGGCAGAGGGAAACAACCAAGTTCCTGTGTC...CAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR GCA 72 bp | GTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTaGAAGAACTGGCGCAGCTCAATAGGTCATGAGCAT | + |
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Preference number: 3 (lower is better) Translates to: VAMALLKCQRVS*KNWRSSIGHEH Trigger: ATGCTCATGACCTATTGAGCTGCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR-3UTR CAA 90 bp | ATAAAGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCAGGGGCTCTGGGCTaGCTTGTATCTGCAGACACA | + |
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Preference number: 3 (lower is better) Translates to: IKSCFSALYSVARGGRSKPGALG*LVSADT Trigger: TGTGTCTGCAGATACAAGCAAGCCCAGAGCCCCTGG...CTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACTTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030575.15 |
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| 3UTR CCA 72 bp | CGTGCTCTAGGAATCCTGGATCCCACTAAACTTCCATaGCTGGTTGGGCACGGGTCAATACAGGTGTGGTCA | + |
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Preference number: 3 (lower is better) Translates to: RALGILDPTKLP*LVGHGSIQVWS Trigger: TGACCACACCTGTATTGACCCGTGCCCAACCAGCCATGGAAGTTTAGTGGGATCCAGGATTCCTAGAGCACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | GTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCACGTCCCCAGTAGTAAGGGCTTCGTGTGGTaGCAGCTCTTCCCCCACCAG | + |
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Preference number: 4 (lower is better) Translates to: VLGGQGRALKALSHVPSSKGFVW*QLFPHQ Trigger: CTGGTGGGGGAAGAGCTGCCACCACACGAAGCCCTT...ACTACTGGGGACGTGGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030575.15 |
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| CDS-3UTR TCA 90 bp | CATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCACGTCCCCAGGCAATGAAGCTCACGTaGCCCAGCACAACCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: HCTRWPGEGAQSPLPRPQAMKLT*PSTTST Trigger: GGTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGC...CTGGGGACGTGGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | TCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCACGTCCCCAGTAGTCCATCAGCTCAATAGGTCATaGGCATCCAGGGGCTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SVARGGRSKPSPTSPVVHQLNRS*ASRGSG Trigger: CCCAGAGCCCCTGGATGCTCATGACCTATTGAGCTG...ATGGACTACTGGGGACGTGGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | GTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCACGTCCCGCTTGTATCGTGTGGTaGCAGCTCTTCCCCCACCAG | + |
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Preference number: 4 (lower is better) Translates to: VHCTRWPGEGAQSPLPRPACIVW*QLFPHQ Trigger: CTGGTGGGGGAAGAGCTGCCACCACACGATACAAGC...GGGACGTGGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR GCA 90 bp | TGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCTCCAGCGCAAGGGGGTaGTGGGGAGGTAGCGTGACA | + |
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Preference number: 4 (lower is better) Translates to: CFSALYSVARGGRSKPSPSSARG*WGGSVT Trigger: TGTCACGCTACCTCCCCAGCACCCCCTTGCGCTGGA...GGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | TACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCACGTCCCCAGTAGTCGTGCTCTACCCTTGGTaGCGAAGGTCACTGCAATGG | + |
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Preference number: 4 (lower is better) Translates to: YSVARGGRSKPSPTSPVVVLYPW*RRSLQW Trigger: CCATTGCAGTGACCTTCGCCACCAAGGGTAGAGCAC...GACTACTGGGGACGTGGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | TCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCAGTAGTCCATGCATaGGCTGGGCGCAGCGCACGG | + |
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Preference number: 4 (lower is better) Translates to: SCFSALYSVARGGRSKPSPVVHA*AGRSAR Trigger: CCGTGCGCTGCGCCCAGCTCATGCATGGACTACTGG...AGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | AAAGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCCAGTAGTCCATGCATaGGCTGGGCGCAGCGCACGG | + |
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Preference number: 4 (lower is better) Translates to: KVLFQCIVLGGQGRALKAPVVHA*AGRSAR Trigger: CCGTGCGCTGCGCCCAGCTCATGCATGGACTACTGG...GGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | TCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCGCAGCGCAAGGGGGTGCTaGGGAGGTAGCGTGACAAGA | + |
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Preference number: 4 (lower is better) Translates to: SVAMALLKCQRVSCKNWRSARGC*GGSVTR Trigger: TCTTGTCACGCTACCTCCCCAGCACCCCCTTGCGCT...GCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030577.11 |
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| CDS-3UTR CCA 90 bp | CTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCGAAGGGCTTCGTGTGGTaGCAGCTCTTCCCCCACCAG | + |
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Preference number: 4 (lower is better) Translates to: LSSHGAAEVSEGQLQELAKGFVW*QLFPHQ Trigger: CTGGTGGGGGAAGAGCTGCCACCACACGAAGCCCTT...CGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS-3UTR GCA 90 bp | AATACAGGTGTGGTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGTCCAGCGCAAGGGGGTaGTGGGGAGGTAGCGTGACA | + |
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Preference number: 4 (lower is better) Translates to: NTGVVTCLSSHGAAEVSESSARG*WGGSVT Trigger: TGTCACGCTACCTCCCCAGCACCCCCTTGCGCTGGA...CTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | AAGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCAGCGCAAGGGGGTGCTaGGGAGGTAGCGTGACAAGA | + |
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Preference number: 4 (lower is better) Translates to: KSCFSALYSVARGGRSKPSARGC*GGSVTR Trigger: TCTTGTCACGCTACCTCCCCAGCACCCCCTTGCGCT...GGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | TGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCCTTGCTTGTATCGTGTaGTGGCAGCTCTTCCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: CFSALYSVARGGRSKPSPLACIV*WQLFPH Trigger: GTGGGGGAAGAGCTGCCACCACACGATACAAGCAAG...GGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | TGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCAATGAAGCTCACGTaGCCCAGCACAACCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: CLSSHGAAEVSEGQLQELAMKLT*PSTTST Trigger: GGTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGC...CAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS-3UTR TCA 90 bp | AAGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCCCGCCAGACAGAATATaGGAGAGATGGCCCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: KSCFSALYSVARGGRSKPPPDRI*ERWPRG Trigger: GCCTCTGGGCCATCTCTCTCATATTCTGTCTGGCGG...GGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | AGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCCGCCAGACAGAATATaGGAGAGATGGCCCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: SLVSVHCTRWPGEGAQSPPPDRI*ERWPRG Trigger: GCCTCTGGGCCATCTCTCTCATATTCTGTCTGGCGG...AGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | CTTGCTTGTATCTGCAGACACAGGAACTTGGTTGTTTCCCTCTGCCTGGGGTCTCCAGTAGTCCATGCATaGGCTGGGCGCAGCGCACGG | + |
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Preference number: 4 (lower is better) Translates to: LACICRHRNLVVSLCLGSPVVHA*AGRSAR Trigger: CCGTGCGCTGCGCCCAGCTCATGCATGGACTACTGG...AGACCCCAGGCAGAGGGAAACAACCAAGTTCCTGTGTCTGCAGATACAAGCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS-3UTR GCA 90 bp | GTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCCTCTCCCACGTCCCGATGGTCGAAATTCCTaGAACAATGACCACAATGGC | + |
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Preference number: 4 (lower is better) Translates to: VHCTRWPGEGAQSPLPRPDGRNS*NNDHNG Trigger: GCCATTGTGGTCATTGTTGCAGGAATTTCGACCATC...GGGACGTGGGAGAGGGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR GCA 90 bp | ATACAGGTGTGGTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGCAGGGGCTCTGGGCTTaGTTGTATCGTGTGGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: IQVWSRASVAMALLKCQRQGLWA*LYRVVA Trigger: TGCCACCACACGATACAAGCAAGCCCAGAGCCCCTG...CCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | GCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCGCAGCTCAATAGGTCAGCAATGAAGCTCACGTaGCCCAGCACAACCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: AAEVSEGQLQELAQLNRSAMKLT*PSTTST Trigger: GGTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGC...TGACCTATTGAGCTGCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS-3UTR TCA 90 bp | ATACAGGTGTGGTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGCCACAATGGCAGAGGTaGCAGAGAGGATGTCCACTG | + |
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Preference number: 4 (lower is better) Translates to: IQVWSRASVAMALLKCQRPQWQR*QRGCPL Trigger: CAGTGGACATCCTCTCTGTCACCTCTGCCATTGTGG...CCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTAT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | ATACAGGTGTGGTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGCTGGGGAGGTAGCGTaGCAAGACGATGGTCGAAAT | + |
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Preference number: 4 (lower is better) Translates to: IQVWSRASVAMALLKCQRAGEVA*QDDGRN Trigger: ATTTCGACCATCGTCTTGTCACGCTACCTCCCCAGC...CCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | ATACAGGTGTGGTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTGCTCTACCCTTGGTaGCGAAGGTCACTGCAATGG | + |
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Preference number: 4 (lower is better) Translates to: IQVWSRASVAMALLKCQRVLYPW*RRSLQW Trigger: CCATTGCAGTGACCTTCGCCACCAAGGGTAGAGCAC...CCTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | GTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCGCAGCGTCAGGTGCCAGTGTTaGGAGTTCAGGGTTCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: VAMALLKCQRVSCKNWRSVRCQC*EFRVLK Trigger: TTTGAGAACCCTGAACTCCCAACACTGGCACCTGAC...GCTGCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS-3UTR TCA 90 bp | AATACAGGTGTGGTCACGTGCCTCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGCTGGGGAGGTAGCGTaGCAAGACGATGGTCGAAAT | + |
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Preference number: 4 (lower is better) Translates to: NTGVVTCLSSHGAAEVSEAGEVA*QDDGRN Trigger: ATTTCGACCATCGTCTTGTCACGCTACCTCCCCAGC...CTCTGACACTTCAGCAGCGCCATGGCTACTGAGGCACGTGACCACACCTGTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | GGTCATGAGCATCCAGGGGCTCTGGGCTTGCTTGTATCTGCAGACACAGGAACTGCACAATGGCAGAGGTaGCAGAGAGGATGTCCACTG | + |
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Preference number: 4 (lower is better) Translates to: GHEHPGALGLLVSADTGTAQWQR*QRGCPL Trigger: CAGTGGACATCCTCTCTGTCACCTCTGCCATTGTGC...AGTTCCTGTGTCTGCAGATACAAGCAAGCCCAGAGCCCCTGGATGCTCATGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030575.15 |
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| CDS-3UTR CCA 90 bp | CATGAGCATCCAGGGGCTCTGGGCTTGCTTGTATCTGCAGACACAGGAACTTGGGTGCTCTACCCTTGGTaGCGAAGGTCACTGCAATGG | + |
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Preference number: 4 (lower is better) Translates to: HEHPGALGLLVSADTGTWVLYPW*RRSLQW Trigger: CCATTGCAGTGACCTTCGCCACCAAGGGTAGAGCAC...CCAAGTTCCTGTGTCTGCAGATACAAGCAAGCCCAGAGCCCCTGGATGCTCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS-3UTR CCA 90 bp | AAAGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCAAAGCCAGCATCCAGGGGCTCTaGGCTTGCTTGTATCGTGTG | + |
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Preference number: 4 (lower is better) Translates to: KVLFQCIVLGGQGRALKASIQGL*ACLYRV Trigger: CACACGATACAAGCAAGCCCAGAGCCCCTGGATGCT...GGCTTTGAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR TCA 90 bp | TCAATAGGTCATGAGCATCCAGGGGCTCTGGGCTTGCTTGTATCTGCAGACACACCGCCAGACAGAATATaGGAGAGATGGCCCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: SIGHEHPGALGLLVSADTPPDRI*ERWPRG Trigger: GCCTCTGGGCCATCTCTCTCATATTCTGTCTGGCGG...TGTGTCTGCAGATACAAGCAAGCCCAGAGCCCCTGGATGCTCATGACCTATTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS-3UTR GCA 90 bp | TCAGTAGCCATGGCGCTGCTGAAGTGTCAGAGGGTCAGCTGCAAGAACTGGCGCGATGGTCGAAATTCCTaGAACAATGACCACAATGGC | + |
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Preference number: 4 (lower is better) Translates to: SVAMALLKCQRVSCKNWRDGRNS*NNDHNG Trigger: GCCATTGTGGTCATTGTTGCAGGAATTTCGACCATC...GCGCCAGTTCTTGCAGCTGACCCTCTGACACTTCAGCAGCGCCATGGCTACTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030577.11 |
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| CDS-3UTR CCA 90 bp | GGTCATGAGCATCCAGGGGCTCTGGGCTTGCTTGTATCTGCAGACACAGGAACTGTCAGGTGCCAGTGTTaGGAGTTCAGGGTTCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: GHEHPGALGLLVSADTGTVRCQC*EFRVLK Trigger: TTTGAGAACCCTGAACTCCCAACACTGGCACCTGAC...AGTTCCTGTGTCTGCAGATACAAGCAAGCCCAGAGCCCCTGGATGCTCATGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR CAA 72 bp | CTGGGCTTGCTTGTATCTGCAGACACAGGAACTTGGTaGTTTCCCTCTGCCTGGGGTCTCTATCTTCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: LGLLVSADTGTW*FPSAWGLYLQD Trigger: GTCCTGAAGATAGAGACCCCAGGCAGAGGGAAACAACCAAGTTCCTGTGTCTGCAGATACAAGCAAGCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| 3UTR CAA 72 bp | GGCTCTGGGCTTGCTTGTATCTGCAGACACAGGAACTaGGTTGTTTCCCTCTGCCTGGGGTCTCTATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GSGLACICRHRN*VVSLCLGSLSS Trigger: TGAAGATAGAGACCCCAGGCAGAGGGAAACAACCAAGTTCCTGTGTCTGCAGATACAAGCAAGCCCAGAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS-3UTR TCA 90 bp | CTTCAAAATAAAGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCCACAATGGCAGAGGTaGCAGAGAGGATGTCCACTG | + |
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Preference number: 4 (lower is better) Translates to: LQNKVLFQCIVLGGQGRAPQWQR*QRGCPL Trigger: CAGTGGACATCCTCTCTGTCACCTCTGCCATTGTGG...CGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACTTTATTTTGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS-3UTR CCA 90 bp | CAAAATAAAGTCTTGTTTCAGTGCATTGTACTCGGTGGCCAGGGGAGGGCGCTCGTCAGGTGCCAGTGTTaGGAGTTCAGGGTTCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: QNKVLFQCIVLGGQGRALVRCQC*EFRVLK Trigger: TTTGAGAACCCTGAACTCCCAACACTGGCACCTGAC...GAGCGCCCTCCCCTGGCCACCGAGTACAATGCACTGAAACAAGACTTTATTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000106064.10 |
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| 3UTR CAA 72 bp | AGCTCAATAGGTCATGAGCATCCAGGGGCTCTGGGCTaGCTTGTATCTGCAGACACAGGAACTTGGTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: SSIGHEHPGALG*LVSADTGTWLF Trigger: AAACAACCAAGTTCCTGTGTCTGCAGATACAAGCAAGCCCAGAGCCCCTGGATGCTCATGACCTATTGAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 |
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| CDS GCA 90 bp | TGGTGGCAGCTCTTCCCCCACCAGGGCCTTAGTTCCAGTAGTCCATaGATGAGCTGGGCGCAGCGCACGGCAGACATACTCTCCGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: WWQLFPHQGLSSSSP*MSWAQRTADILSAR Trigger: TCTGGCGGAGAGTATGTCTGCCGTGCGCTGCGCCCAGCTCATGCATGGACTACTGGAACTAAGGCCCTGGTGGGGGAAGAGCTGCCACCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS GCA 90 bp | GGTGGTGGCTACGAAGCGAAGCATGGTACCATGGAGCACGGCGGCTaGAATGAAGCTCACGTGACCCAGCACAACCAGCACCAGACCCGT | + |
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Preference number: 5 (lower is better) Translates to: GGGYEAKHGTMEHGG*NEAHVTQHNQHQTR Trigger: ACGGGTCTGGTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGCAGCCGCCGTGCTCCATGGTACCATGCTTCGCTTCGTAGCCACCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 ENSMUST00000148979.2 |
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| CDS TCA 90 bp | CGAAGCATGGTACCATGGAGCACGGCGGCTGCAATGAAGCTCACGTaGCCCAGCACAACCAGCACCAGACCCGTCTTCATCAGCACCTTC | + |
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Preference number: 5 (lower is better) Translates to: RSMVPWSTAAAMKLT*PSTTSTRPVFISTF Trigger: GAAGGTGCTGATGAAGACGGGTCTGGTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGCAGCCGCCGTGCTCCATGGTACCATGCTTCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 ENSMUST00000148979.2 |
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| CDS TCA 90 bp | TGGCTACGAAGCGAAGCATGGTACCATGGAGCACGGCGGCTGCAATaGAGCTCACGTGACCCAGCACAACCAGCACCAGACCCGTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: WLRSEAWYHGARRLQ*SSRDPAQPAPDPSS Trigger: TGAAGACGGGTCTGGTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGCAGCCGCCGTGCTCCATGGTACCATGCTTCGCTTCGTAGCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 ENSMUST00000148979.2 |
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| CDS CCA 90 bp | CAGAGAGGATGTCCACTGCGCAGTACTGTAGAACCACAGCGTCACTaGTGGTGGCTACGAAGCGAAGCATGGTACCATGGAGCACGGCGG | + |
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Preference number: 5 (lower is better) Translates to: QRGCPLRSTVEPQRH*WWLRSEAWYHGARR Trigger: CCGCCGTGCTCCATGGTACCATGCTTCGCTTCGTAGCCACCACCAGTGACGCTGTGGTTCTACAGTACTGCGCAGTGGACATCCTCTCTG 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 ENSMUST00000148979.2 |
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| CDS CCA 90 bp | CTCTTCCCCCACCAGGGCCTTAGTTCCAGTAGTCCATGCATGAGCTaGGCGCAGCGCACGGCAGACATACTCTCCGCCAGACAGAATATG | + |
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Preference number: 5 (lower is better) Translates to: LFPHQGLSSSSPCMS*AQRTADILSARQNM Trigger: CATATTCTGTCTGGCGGAGAGTATGTCTGCCGTGCGCTGCGCCCAGCTCATGCATGGACTACTGGAACTAAGGCCCTGGTGGGGGAAGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS TCA 90 bp | CAAGCTAAACACGGTCCAGCGCAAGGGGGTGCTGGGGAGGTAGCGTaGCAAGACGATGGTCGAAATTCCTGCAACAATGACCACAATGGC | + |
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Preference number: 5 (lower is better) Translates to: QAKHGPAQGGAGEVA*QDDGRNSCNNDHNG Trigger: GCCATTGTGGTCATTGTTGCAGGAATTTCGACCATCGTCTTGTCACGCTACCTCCCCAGCACCCCCTTGCGCTGGACCGTGTTTAGCTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS GCA 90 bp | CAGGCTAGAGCTATAAATTCGAGTAGGGTCAAAAGGACAGTCAGGTaGCAGTGTTGGGAGTTCAGGGTTCTCAAAAGTACAGGCCGCCAA | + |
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Preference number: 5 (lower is better) Translates to: QARAINSSRVKRTVR*QCWEFRVLKSTGRQ Trigger: TTGGCGGCCTGTACTTTTGAGAACCCTGAACTCCCAACACTGGCACCTGACTGTCCTTTTGACCCTACTCGAATTTATAGCTCTAGCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS GCA 72 bp | CTCTTCCCCCACCAGGGCCTTAGTTCCAGTAGTCCATaGATGAGCTGGGCGCAGCGCACGGCAGACATACTC | + |
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Preference number: 6 (lower is better) Translates to: LFPHQGLSSSSP*MSWAQRTADIL Trigger: GAGTATGTCTGCCGTGCGCTGCGCCCAGCTCATGCATGGACTACTGGAACTAAGGCCCTGGTGGGGGAAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS CCA 72 bp | CACCAGGGCCTTAGTTCCAGTAGTCCATGCATGAGCTaGGCGCAGCGCACGGCAGACATACTCTCCGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: HQGLSSSSPCMS*AQRTADILSAR Trigger: TCTGGCGGAGAGTATGTCTGCCGTGCGCTGCGCCCAGCTCATGCATGGACTACTGGAACTAAGGCCCTGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS CCA 72 bp | GCATCCAGGGGCTCTGGGCTTGCTTGTATCGTGTGGTaGCAGCTCTTCCCCCACCAGGGCCTTAGTTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: ASRGSGLACIVW*QLFPHQGLSSS Trigger: ACTGGAACTAAGGCCCTGGTGGGGGAAGAGCTGCCACCACACGATACAAGCAAGCCCAGAGCCCCTGGATGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS TCA 72 bp | GTACCATGGAGCACGGCGGCTGCAATGAAGCTCACGTaGCCCAGCACAACCAGCACCAGACCCGTCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: VPWSTAAAMKLT*PSTTSTRPVFI Trigger: GATGAAGACGGGTCTGGTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGCAGCCGCCGTGCTCCATGGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 ENSMUST00000148979.2 |
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| CDS TCA 72 bp | AGCGAAGCATGGTACCATGGAGCACGGCGGCTGCAATaGAGCTCACGTGACCCAGCACAACCAGCACCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SEAWYHGARRLQ*SSRDPAQPAPD Trigger: GTCTGGTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGCAGCCGCCGTGCTCCATGGTACCATGCTTCGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 ENSMUST00000148979.2 |
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| CDS CAA 90 bp | AACTGGCGCAGCTCAATAGGTCATGAGCATCCAGGGGCTCTGGGCTaGCTTGTATCGTGTGGTGGCAGCTCTTCCCCCACCAGGGCCTTA | + |
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Preference number: 6 (lower is better) Translates to: NWRSSIGHEHPGALG*LVSCGGSSSPTRAL Trigger: TAAGGCCCTGGTGGGGGAAGAGCTGCCACCACACGATACAAGCAAGCCCAGAGCCCCTGGATGCTCATGACCTATTGAGCTGCGCCAGTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106064.10 |
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| CDS TCA 72 bp | CACGGTCCAGCGCAAGGGGGTGCTGGGGAGGTAGCGTaGCAAGACGATGGTCGAAATTCCTGCAACAATGAC | + |
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Preference number: 6 (lower is better) Translates to: HGPAQGGAGEVA*QDDGRNSCNND Trigger: GTCATTGTTGCAGGAATTTCGACCATCGTCTTGTCACGCTACCTCCCCAGCACCCCCTTGCGCTGGACCGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030577.11 ENSMUST00000106064.10 ENSMUST00000148979.2 |
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| CDS GCA 72 bp | TACGAAGCGAAGCATGGTACCATGGAGCACGGCGGCTaGAATGAAGCTCACGTGACCCAGCACAACCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: YEAKHGTMEHGG*NEAHVTQHNQH Trigger: GTGCTGGTTGTGCTGGGTCACGTGAGCTTCATTGCAGCCGCCGTGCTCCATGGTACCATGCTTCGCTTCGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 ENSMUST00000148979.2 |
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| CDS CCA 72 bp | CAGCACCTTCCGGAACTCATCCACATTCAGGCTACCTaGTACCAGCCTGTCCTGTTCAGAGGTAACCCCGGA | + |
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Preference number: 6 (lower is better) Translates to: QHLPELIHIQAT*YQPVLFRGNPG Trigger: TCCGGGGTTACCTCTGAACAGGACAGGCTGGTACCAGGTAGCCTGAATGTGGATGAGTTCCGGAAGGTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148979.2 |
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| CDS CAA 90 bp | AGTTCAGGGTTCTCAAAAGTACAGGCCGCCAATAGTGCTCTACCCTaGGTGGCGAAGGTCACTGCAATGGAGGCCAGGAGTCCAAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: SSGFSKVQAANSALP*VAKVTAMEARSPRA Trigger: TGCCCTTGGACTCCTGGCCTCCATTGCAGTGACCTTCGCCACCAAGGGTAGAGCACTATTGGCGGCCTGTACTTTTGAGAACCCTGAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS CCA 72 bp | CAAAAGTACAGGCCGCCAATAGTGCTCTACCCTTGGTaGCGAAGGTCACTGCAATGGAGGCCAGGAGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: QKYRPPIVLYPW*RRSLQWRPGVQ Trigger: TTGGACTCCTGGCCTCCATTGCAGTGACCTTCGCCACCAAGGGTAGAGCACTATTGGCGGCCTGTACTTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS CCA 72 bp | TCTCAAAAGTACAGGCCGCCAATAGTGCTCTACCCTTaGTGGCGAAGGTCACTGCAATGGAGGCCAGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: SQKYRPPIVLYP*WRRSLQWRPGV Trigger: GACTCCTGGCCTCCATTGCAGTGACCTTCGCCACCAAGGGTAGAGCACTATTGGCGGCCTGTACTTTTGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS CAA 72 bp | TTCTCAAAAGTACAGGCCGCCAATAGTGCTCTACCCTaGGTGGCGAAGGTCACTGCAATGGAGGCCAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: FSKVQAANSALP*VAKVTAMEARS Trigger: ACTCCTGGCCTCCATTGCAGTGACCTTCGCCACCAAGGGTAGAGCACTATTGGCGGCCTGTACTTTTGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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| CDS GCA 72 bp | GCTATAAATTCGAGTAGGGTCAAAAGGACAGTCAGGTaGCAGTGTTGGGAGTTCAGGGTTCTCAAAAGTACA | + |
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Preference number: 6 (lower is better) Translates to: AINSSRVKRTVR*QCWEFRVLKST Trigger: TGTACTTTTGAGAACCCTGAACTCCCAACACTGGCACCTGACTGTCCTTTTGACCCTACTCGAATTTATAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030575.15 ENSMUST00000030577.11 ENSMUST00000106064.10 |
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