RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM52B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030160

Ensembl transcript IDs: ENSMUST00000032263.7, ENSMUST00000204741.3

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTGCACTCACTTGCAGTGCTTTTCCCTCAGGGCTTCGGTGAACATTaGAAGAATGTATTTAATGAGGTGCAGCACTCATCAGCCCCCTCC +
Preference number: 1 (lower is better)
Translates to: LHSLAVLFPQGFGEH*KNVFNEVQHSSAPS
Trigger: GGAGGGGGCTGATGAGTGCTGCACCTCATTAAATACATTCTTGCAATGTTCACCGAAGCCCTGAGGGAAAAGCACTGCAAGTGAGTGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CCA 90 bp GATGGTAATGACAGCAGTGTGGAAGGTGGCACCACCAGGATAGCTTaGCACCCTCTTTTGATTGTATATGCCATCAGAAGAAGATCCAGG +
Preference number: 1 (lower is better)
Translates to: DGNDSSVEGGTTRIA*HPLLIVYAIRRRSR
Trigger: CCTGGATCTTCTTCTGATGGCATATACAATCAAAAGAGGGTGCCAAGCTATCCTGGTGGTGCCACCTTCCACACTGCTGTCATTACCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CCA 90 bp CTTGTTCACAGAACATGTCTAGGTGGCATCCTGAACCTTGCTGGGTaGTATAAAAGAAAACATCTCATGTATCTTGGGATCGTTCCAGGT +
Preference number: 1 (lower is better)
Translates to: LVHRTCLGGILNLAG*YKRKHLMYLGIVPG
Trigger: ACCTGGAACGATCCCAAGATACATGAGATGTTTTCTTTTATACCACCCAGCAAGGTTCAGGATGCCACCTAGACATGTTCTGTGAACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR TCA 90 bp ACTCAATTAGCAATGTGTGTATCAGAAAAAGCACGTTGTTGTGAATaGAGAGTGAGAACCCACCTTGTTCACAGAACATGTCTAGGTGGC +
Preference number: 1 (lower is better)
Translates to: TQLAMCVSEKARCCE*RVRTHLVHRTCLGG
Trigger: GCCACCTAGACATGTTCTGTGAACAAGGTGGGTTCTCACTCTTCATTCACAACAACGTGCTTTTTCTGATACACACATTGCTAATTGAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR GCA 90 bp GTCTCCCTTCAAGATTACCACAGTCAAGTAGAGGGAAGAGCAATTTaGAGGATTATAGGGTTAAAGAAACTTTATATGCATGCTGTAGTT +
Preference number: 1 (lower is better)
Translates to: VSLQDYHSQVEGRAI*RIIGLKKLYMHAVV
Trigger: AACTACAGCATGCATATAAAGTTTCTTTAACCCTATAATCCTGCAAATTGCTCTTCCCTCTACTTGACTGTGGTAATCTTGAAGGGAGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR TCA 90 bp TTGCAGGATTATAGGGTTAAAGAAACTTTATATGCATGCTGTAGTTaGAGGAATTCAAGACACCTTAATGTTCCATGCTTTGGTAGTAGT +
Preference number: 1 (lower is better)
Translates to: LQDYRVKETLYACCS*RNSRHLNVPCFGSS
Trigger: ACTACTACCAAAGCATGGAACATTAAGGTGTCTTGAATTCCTTCAACTACAGCATGCATATAAAGTTTCTTTAACCCTATAATCCTGCAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR GCA 90 bp GGTGAACATTGCAAGAATGTATTTAATGAGGTGCAGCACTCATCAGCCCCCTCCCAGAACCCCTGGCTGTaGAATCTGCAAGTCCAGGTG +
Preference number: 2 (lower is better)
Translates to: GEHCKNVFNEVQHSSAPSQNPWL*NLQVQV
Trigger: CACCTGGACTTGCAGATTGCACAGCCAGGGGTTCTG...GGAGGGGGCTGATGAGTGCTGCACCTCATTAAATACATTCTTGCAATGTTCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR TCA 90 bp ACTAGCAGATTGCACTCACTTGCAGTGCTTTTCCCTCAGGGCTTCGGTGAACATGCACGTTGTTGTGAATaGAGAGTGAGAACCCACCTT +
Preference number: 2 (lower is better)
Translates to: TSRLHSLAVLFPQGFGEHARCCE*RVRTHL
Trigger: AAGGTGGGTTCTCACTCTTCATTCACAACAACGTGC...ATGTTCACCGAAGCCCTGAGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR CCA 90 bp CCCCAGAATACATCTCACTGCTTTGATGGTAATGACAGCAGTGTGGAAGGTGGCGGTAGCACTGAGAATTaGAAAGGTGCACAGACCTCA +
Preference number: 2 (lower is better)
Translates to: PQNTSHCFDGNDSSVEGGGSTEN*KGAQTS
Trigger: TGAGGTCTGTGCACCTTTCCAATTCTCAGTGCTACC...GCCACCTTCCACACTGCTGTCATTACCATCAAAGCAGTGAGATGTATTCTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR CCA 90 bp GGTGAACATTGCAAGAATGTATTTAATGAGGTGCAGCACTCATCAGCCCCCTCCATCTGCAAGTCCAGGTaGGGATTCTATGGTGTACCA +
Preference number: 2 (lower is better)
Translates to: GEHCKNVFNEVQHSSAPSICKSR*GFYGVP
Trigger: TGGTACACCATAGAATCCCCACCTGGACTTGCAGAT...GGAGGGGGCTGATGAGTGCTGCACCTCATTAAATACATTCTTGCAATGTTCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR CCA 90 bp ACTAGCAGATTGCACTCACTTGCAGTGCTTTTCCCTCAGGGCTTCGGTGAACATACCACCAGGATAGCTTaGCACCCTCTTTTGATTGTA +
Preference number: 2 (lower is better)
Translates to: TSRLHSLAVLFPQGFGEHTTRIA*HPLLIV
Trigger: TACAATCAAAAGAGGGTGCCAAGCTATCCTGGTGGT...ATGTTCACCGAAGCCCTGAGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR TCA 90 bp ATTCAGGAGTTCCAATCACTAGCAGATTGCACTCACTTGCAGTGCTTTTCCCTCTGCAGGACAAAGCACTaGAAAGTTGCTAGGACCACT +
Preference number: 2 (lower is better)
Translates to: IQEFQSLADCTHLQCFSLCRTKH*KVARTT
Trigger: AGTGGTCCTAGCAACTTTTCAGTGCTTTGTCCTGCA...GAGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGTGATTGGAACTCCTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR TCA 90 bp GGTGAACATTGCAAGAATGTATTTAATGAGGTGCAGCACTCATCAGCCCCCTCCAAAAGCACGTTGTTGTaGATGAAGAGTGAGAACCCA +
Preference number: 2 (lower is better)
Translates to: GEHCKNVFNEVQHSSAPSKSTLL*MKSENP
Trigger: TGGGTTCTCACTCTTCATTCACAACAACGTGCTTTT...GGAGGGGGCTGATGAGTGCTGCACCTCATTAAATACATTCTTGCAATGTTCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR TCA 90 bp CCCCAGAATACATCTCACTGCTTTGATGGTAATGACAGCAGTGTGGAAGGTGGCCAGACCTCAACGGAGTaGATTTTTAATTATTGTTCC +
Preference number: 2 (lower is better)
Translates to: PQNTSHCFDGNDSSVEGGQTSTE*IFNYCS
Trigger: GGAACAATAATTAAAAATTCACTCCGTTGAGGTCTG...GCCACCTTCCACACTGCTGTCATTACCATCAAAGCAGTGAGATGTATTCTGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR TCA 90 bp ATTCAGGAGTTCCAATCACTAGCAGATTGCACTCACTTGCAGTGCTTTTCCCTCTATGCATGCTGTAGTTaGAGGAATTCAAGACACCTT +
Preference number: 2 (lower is better)
Translates to: IQEFQSLADCTHLQCFSLYACCS*RNSRHL
Trigger: AAGGTGTCTTGAATTCCTTCAACTACAGCATGCATA...GAGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGTGATTGGAACTCCTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR CCA 90 bp AGGAAAGAAGCAGAGGAATGCTTTCTTTCAGAGCCTAAAAAGTGTGTGTGTGTGAAAGATGCATGGATTTaGTGCACTGATGGTAGTGGC +
Preference number: 2 (lower is better)
Translates to: RKEAEECFLSEPKKCVCVKDAWI*CTDGSG
Trigger: GCCACTACCATCAGTGCACCAAATCCATGCATCTTT...CACACACACACACTTTTTAGGCTCTGAAAGAAAGCATTCCTCTGCTTCTTTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR GCA 90 bp GATTCAGGAGTTCCAATCACTAGCAGATTGCACTCACTTGCAGTGCTTTTCCCTAAAGAAGCAGAGGAATaGTTTCTTTCAGAGCCTAAA +
Preference number: 2 (lower is better)
Translates to: DSGVPITSRLHSLAVLFPKEAEE*FLSEPK
Trigger: TTTAGGCTCTGAAAGAAAGCATTCCTCTGCTTCTTT...AGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGTGATTGGAACTCCTGAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR GCA 90 bp ACTCTAGACTACATGGTGAAGGCTTTCCATCCTGAGAACAAGAAGGAAAGAAGCCACCTTAATGTTCCATaGTTTGGTAGTAGTCAATAT +
Preference number: 2 (lower is better)
Translates to: TLDYMVKAFHPENKKERSHLNVP*FGSSQY
Trigger: ATATTGACTACTACCAAAGCATGGAACATTAAGGTG...GCTTCTTTCCTTCTTGTTCTCAGGATGGAAAGCCTTCACCATGTAGTCTAGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR GCA 90 bp GGAAGAATAACACGTGATACACGGGATGTTTTACAAATAGTGCCTTGGGGTATAGAGGGAAGAGCAATTTaGAGGATTATAGGGTTAAAG +
Preference number: 2 (lower is better)
Translates to: GRITRDTRDVLQIVPWGIEGRAI*RIIGLK
Trigger: CTTTAACCCTATAATCCTGCAAATTGCTCTTCCCTC...TATACCCCAAGGCACTATTTGTAAAACATCCCGTGTATCACGTGTTATTCTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 90 bp CATGCTGTAGTTGAAGGAATTCAAGACACCTTAATGTTCCATGCTTaGGTAGTAGTCAATATAGCTAAAGGTGAGTTGCAAGCTTTGAAC +
Preference number: 2 (lower is better)
Translates to: HAVVEGIQDTLMFHA*VVVNIAKGELQALN
Trigger: GTTCAAAGCTTGCAACTCACCTTTAGCTATATTGACTACTACCAAAGCATGGAACATTAAGGTGTCTTGAATTCCTTCAACTACAGCATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 90 bp TGTCTCCCTTCAAGATTACCACAGTCAAGTAGAGGGAAGAGCAATTaGCAGGATTATAGGGTTAAAGAAACTTTATATGCATGCTGTAGT +
Preference number: 2 (lower is better)
Translates to: CLPSRLPQSSRGKSN*QDYRVKETLYACCS
Trigger: ACTACAGCATGCATATAAAGTTTCTTTAACCCTATAATCCTGCAAATTGCTCTTCCCTCTACTTGACTGTGGTAATCTTGAAGGGAGACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR CCA 90 bp ATGCATGCTGTAGTTGAAGGAATTCAAGACACCTTAATGTTCCATGCTTTGGTACTGAACCTTGCTGGGTaGTATAAAAGAAAACATCTC +
Preference number: 2 (lower is better)
Translates to: MHAVVEGIQDTLMFHALVLNLAG*YKRKHL
Trigger: GAGATGTTTTCTTTTATACCACCCAGCAAGGTTCAG...TACCAAAGCATGGAACATTAAGGTGTCTTGAATTCCTTCAACTACAGCATGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 90 bp TGCAAAGTGTGTTCAGAGGAATCCTTAGGTGTTTTGTTGTTGTTGTaGTTGTTGTTGTTGTTGTTGTTTTCTGTTTATCTCAATCAAGAC +
Preference number: 2 (lower is better)
Translates to: CKVCSEESLGVLLLL*LLLLLLFSVYLNQD
Trigger: GTCTTGATTGAGATAAACAGAAAACAACAACAACAACAACAACAACAACAACAACAAAACACCTAAGGATTCCTCTGAACACACTTTGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 90 bp AATAATTTAATAATAATAATAAAAGAGACAGAGTTAGGCAGGAAATaGGCAGGTGAAGGCAAGTCTTGGTGTCATAGAAACTGGGAGACT +
Preference number: 2 (lower is better)
Translates to: NNLIIIIKETELGRK*AGEGKSWCHRNWET
Trigger: AGTCTCCCAGTTTCTATGACACCAAGACTTGCCTTCACCTGCCAATTTCCTGCCTAACTCTGTCTCTTTTATTATTATTATTAAATTATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR GCA 72 bp CTCTCCACTCATATCAGAACCCCTGGCTGTGCAATCTaGAAGTCCAGGTGGGGATTCTATGGTGTACCAGGT +
Preference number: 3 (lower is better)
Translates to: LSTHIRTPGCAI*KSRWGFYGVPG
Trigger: ACCTGGTACACCATAGAATCCCCACCTGGACTTGCAGATTGCACAGCCAGGGGTTCTGATATGAGTGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CCA 72 bp GACAGCAGTGTGGAAGGTGGCACCACCAGGATAGCTTaGCACCCTCTTTTGATTGTATATGCCATCAGAAGA +
Preference number: 3 (lower is better)
Translates to: DSSVEGGTTRIA*HPLLIVYAIRR
Trigger: TCTTCTGATGGCATATACAATCAAAAGAGGGTGCCAAGCTATCCTGGTGGTGCCACCTTCCACACTGCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR GCA 72 bp GCTTCGGTGAACATTGCAAGAATGTATTTAATGAGGTaGAGCACTCATCAGCCCCCTCCCCCATCGAATCAT +
Preference number: 3 (lower is better)
Translates to: ASVNIARMYLMR*STHQPPPPSNH
Trigger: ATGATTCGATGGGGGAGGGGGCTGATGAGTGCTGCACCTCATTAAATACATTCTTGCAATGTTCACCGAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CCA 72 bp GAGTTAGGCAGGAAATTGGCAGGTGAAGGCAAGTCTTaGTGTCATAGAAACTGGGAGACTGCCCTAGTCTAT +
Preference number: 3 (lower is better)
Translates to: ELGRKLAGEGKS*CHRNWETALVY
Trigger: ATAGACTAGGGCAGTCTCCCAGTTTCTATGACACCAAGACTTGCCTTCACCTGCCAATTTCCTGCCTAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CCA 72 bp TTGGCAGGTGAAGGCAAGTCTTGGTGTCATAGAAACTaGGAGACTGCCCTAGTCTATGCATCAAAGTACCAT +
Preference number: 3 (lower is better)
Translates to: LAGEGKSWCHRN*ETALVYASKYH
Trigger: ATGGTACTTTGATGCATAGACTAGGGCAGTCTCCCAGTTTCTATGACACCAAGACTTGCCTTCACCTGCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR CAA 90 bp AGGATAGCTTGGCACCCTCTTTTGATTGTATATGCCATCAGAAGAAGATCCAGGAGGTCTGATGATGCTTaGACTATCAGGAATCCCGTC +
Preference number: 3 (lower is better)
Translates to: RIAWHPLLIVYAIRRRSRRSDDA*TIRNPV
Trigger: GACGGGATTCCTGATAGTCAAAGCATCATCAGACCT...CCTGGATCTTCTTCTGATGGCATATACAATCAAAAGAGGGTGCCAAGCTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR TCA 72 bp CTAACAACTTATGCTCATCAGCTTGCCCAGGCACTCTaGTCTGTGATTCAGGAGTTCCAATCACTAGCAGAT +
Preference number: 3 (lower is better)
Translates to: LTTYAHQLAQAL*SVIQEFQSLAD
Trigger: ATCTGCTAGTGATTGGAACTCCTGAATCACAGATCAGAGTGCCTGGGCAAGCTGATGAGCATAAGTTGTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR GCA 72 bp CTTGCAGTGCTTTTCCCTCAGGGCTTCGGTGAACATTaGAAGAATGTATTTAATGAGGTGCAGCACTCATCA +
Preference number: 3 (lower is better)
Translates to: LAVLFPQGFGEH*KNVFNEVQHSS
Trigger: TGATGAGTGCTGCACCTCATTAAATACATTCTTGCAATGTTCACCGAAGCCCTGAGGGAAAAGCACTGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR TCA 72 bp GTGAGTGTGTGTGTGTGTGTTTGCAGGACAAAGCACTaGAAAGTTGCTAGGACCACTTCTGTACTCTATACA +
Preference number: 3 (lower is better)
Translates to: VSVCVCVCRTKH*KVARTTSVLYT
Trigger: TGTATAGAGTACAGAAGTGGTCCTAGCAACTTTTCAGTGCTTTGTCCTGCAAACACACACACACACACTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR CAA 90 bp AGGAAAGAAGCAGAGGAATGCTTTCTTTCAGAGCCTAAAAAGTGTGTGTGTGTGCTATGGTGTACCAGGTaGTTCAGCATAATGGTGGTT +
Preference number: 3 (lower is better)
Translates to: RKEAEECFLSEPKKCVCVLWCTR*FSIMVV
Trigger: AACCACCATTATGCTGAACAACCTGGTACACCATAG...CACACACACACACTTTTTAGGCTCTGAAAGAAAGCATTCCTCTGCTTCTTTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR TCA 72 bp GCAATGTGTGTATCAGAAAAAGCACGTTGTTGTGAATaGAGAGTGAGAACCCACCTTGTTCACAGAACATGT +
Preference number: 3 (lower is better)
Translates to: AMCVSEKARCCE*RVRTHLVHRTC
Trigger: ACATGTTCTGTGAACAAGGTGGGTTCTCACTCTTCATTCACAACAACGTGCTTTTTCTGATACACACATTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR TCA 72 bp ACTGAGAATTGGAAAGGTGCACAGACCTCAACGGAGTaGATTTTTAATTATTGTTCCACTAGGTGGCAGCAA +
Preference number: 3 (lower is better)
Translates to: TENWKGAQTSTE*IFNYCSTRWQQ
Trigger: TTGCTGCCACCTAGTGGAACAATAATTAAAAATTCACTCCGTTGAGGTCTGTGCACCTTTCCAATTCTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR-3UTR CAA 90 bp GTACTTTACCTATGGTTTTACAATAACACAGCAGACAGACAGGCAAAAGGACAAGGGGTATATGTGTTCTaGAATGTGCACAATGATGTC +
Preference number: 3 (lower is better)
Translates to: VLYLWFYNNTADRQAKGQGVYVF*NVHNDV
Trigger: GACATCATTGTGCACATTCAAGAACACATATACCCC...TTGTCCTTTTGCCTGTCTGTCTGCTGTGTTATTGTAAAACCATAGGTAAAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR CCA 90 bp GCAGATTGCACTCACTTGCAGTGCTTTTCCCTCAGGGCTTCGGTGAACATTGCAGAGGCCATCAGCACCTaGGCCCAGGCTGTCATTAGG +
Preference number: 4 (lower is better)
Translates to: ADCTHLQCFSLRASVNIAEAIST*AQAVIR
Trigger: CCTAATGACAGCCTGGGCCCAGGTGCTGATGGCCTC...TGCAATGTTCACCGAAGCCCTGAGGGAAAAGCACTGCAAGTGAGTGCAATCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR GCA 90 bp GCTGTGCACAAAGTATGTCTCCCTTCAAGATTACCACAGTCAAGTAGAGGGAAGCAGGATTCTCCGAGCTaGAGGGCCAAACACGGACTG +
Preference number: 4 (lower is better)
Translates to: AVHKVCLPSRLPQSSRGKQDSPS*RAKHGL
Trigger: CAGTCCGTGTTTGGCCCTGCAGCTCGGAGAATCCTG...CTTCCCTCTACTTGACTGTGGTAATCTTGAAGGGAGACATACTTTGTGCACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR GCA 90 bp GCTGTGCACAAAGTATGTCTCCCTTCAAGATTACCACAGTCAAGTAGAGGGAAGGTGTGCATGAGCCACTaGCAGGATTCTCCGAGCTGC +
Preference number: 4 (lower is better)
Translates to: AVHKVCLPSRLPQSSRGKVCMSH*QDSPSC
Trigger: GCAGCTCGGAGAATCCTGGCAGTGGCTCATGCACAC...CTTCCCTCTACTTGACTGTGGTAATCTTGAAGGGAGACATACTTTGTGCACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR CCA 90 bp ATTCAGGAGTTCCAATCACTAGCAGATTGCACTCACTTGCAGTGCTTTTCCCTCAGCTTCCTCGTAGCCTaGGAGTGTGTCCACAGAGGA +
Preference number: 4 (lower is better)
Translates to: IQEFQSLADCTHLQCFSLSFLVA*ECVHRG
Trigger: TCCTCTGTGGACACACTCCCAGGCTACGAGGAAGCT...GAGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGTGATTGGAACTCCTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR CCA 90 bp GCTGTGCACAAAGTATGTCTCCCTTCAAGATTACCACAGTCAAGTAGAGGGAAGGAGATTCCTTCCCCGTaGGAGGCAGCTGCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: AVHKVCLPSRLPQSSRGKEIPSP*EAAAFP
Trigger: AGGAAAAGCAGCTGCCTCCCACGGGGAAGGAATCTC...CTTCCCTCTACTTGACTGTGGTAATCTTGAAGGGAGACATACTTTGTGCACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR TCA 90 bp GATTCAGGAGTTCCAATCACTAGCAGATTGCACTCACTTGCAGTGCTTTTCCCTCCCCAGGAAGCTGGATaGAATAAAACAGGCCAGAGG +
Preference number: 4 (lower is better)
Translates to: DSGVPITSRLHSLAVLFPPQEAG*NKTGQR
Trigger: CCTCTGGCCTGTTTTATTTCATCCAGCTTCCTGGGG...AGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGTGATTGGAACTCCTGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR TCA 90 bp AGGAAAGAAGCAGAGGAATGCTTTCTTTCAGAGCCTAAAAAGTGTGTGTGTGTGGCAGCGGAAGCATACTaGAGTCAGGCCACACAGGAG +
Preference number: 4 (lower is better)
Translates to: RKEAEECFLSEPKKCVCVAAEAY*SQATQE
Trigger: CTCCTGTGTGGCCTGACTTCAGTATGCTTCCGCTGC...CACACACACACACTTTTTAGGCTCTGAAAGAAAGCATTCCTCTGCTTCTTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR GCA 90 bp AGTGAGAACCCACCTTGTTCACAGAACATGTCTAGGTGGCATCCTGAACCTTGCTGGTGCTCTGGAGAGTaGTGTCATGGTCAAAAGCAA +
Preference number: 4 (lower is better)
Translates to: SENPPCSQNMSRWHPEPCWCSGE*CHGQKQ
Trigger: TTGCTTTTGACCATGACAGCACTCTCCAGAGCACCA...GCAAGGTTCAGGATGCCACCTAGACATGTTCTGTGAACAAGGTGGGTTCTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR CCA 90 bp ACTAGCAGATTGCACTCACTTGCAGTGCTTTTCCCTCAGGGCTTCGGTGAACATGATGTAATGGTGCTCTaGAGAGTGCTGTCATGGTCA +
Preference number: 4 (lower is better)
Translates to: TSRLHSLAVLFPQGFGEHDVMVL*RVLSWS
Trigger: TGACCATGACAGCACTCTCCAGAGCACCATTACATC...ATGTTCACCGAAGCCCTGAGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 72 bp GAAGGTGGCACCACCAGGATAGCTTGGCACCCTCTTTaGATTGTATATGCCATCAGAAGAAGATCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: EGGTTRIAWHPL*IVYAIRRRSRL
Trigger: AAGCCTGGATCTTCTTCTGATGGCATATACAATCAAAAGAGGGTGCCAAGCTATCCTGGTGGTGCCACCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 72 bp CTGATCTGTGATTCAGGAGTTCCAATCACTAGCAGATaGCACTCACTTGCAGTGCTTTTCCCTCAGGGCTTC +
Preference number: 4 (lower is better)
Translates to: LICDSGVPITSR*HSLAVLFPQGF
Trigger: GAAGCCCTGAGGGAAAAGCACTGCAAGTGAGTGCAATCTGCTAGTGATTGGAACTCCTGAATCACAGATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR CCA 90 bp GGACAAAGCACTGAAAAGTTGCTAGGACCACTTCTGTACTCTATACAATGTTTCACAGAGGAAGGCAGCTaGCCCAAGGAGCTGTGTGCA +
Preference number: 4 (lower is better)
Translates to: GQSTEKLLGPLLYSIQCFTEEGS*PKELCA
Trigger: TGCACACAGCTCCTTGGGCCAGCTGCCTTCCTCTGT...GAAACATTGTATAGAGTACAGAAGTGGTCCTAGCAACTTTTCAGTGCTTTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR GCA 90 bp GGTGAACATTGCAAGAATGTATTTAATGAGGTGCAGCACTCATCAGCCCCCTCCCATATATACCAGAGATaGACCCAGTCAGTAGTCAGG +
Preference number: 4 (lower is better)
Translates to: GEHCKNVFNEVQHSSAPSHIYQR*TQSVVR
Trigger: CCTGACTACTGACTGGGTGCATCTCTGGTATATATG...GGAGGGGGCTGATGAGTGCTGCACCTCATTAAATACATTCTTGCAATGTTCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR GCA 90 bp ATGCATGCTGTAGTTGAAGGAATTCAAGACACCTTAATGTTCCATGCTTTGGTAGCCCAAGGAGCTGTGTaGATGAGCCACTGCCAGGAT +
Preference number: 4 (lower is better)
Translates to: MHAVVEGIQDTLMFHALVAQGAV*MSHCQD
Trigger: ATCCTGGCAGTGGCTCATGCACACAGCTCCTTGGGC...TACCAAAGCATGGAACATTAAGGTGTCTTGAATTCCTTCAACTACAGCATGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR TCA 90 bp AGGAAAGAAGCAGAGGAATGCTTTCTTTCAGAGCCTAAAAAGTGTGTGTGTGTGGGCAATGTTCAGTGTTaGCACAGTTCTCCTCACTCC +
Preference number: 4 (lower is better)
Translates to: RKEAEECFLSEPKKCVCVGNVQC*HSSPHS
Trigger: GGAGTGAGGAGAACTGTGTCAACACTGAACATTGCC...CACACACACACACTTTTTAGGCTCTGAAAGAAAGCATTCCTCTGCTTCTTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR CCA 90 bp GGAAGAATAACACGTGATACACGGGATGTTTTACAAATAGTGCCTTGGGGTATATGGAGAGTGCTGTCATaGTCAAAAGCAATGACAGTC +
Preference number: 4 (lower is better)
Translates to: GRITRDTRDVLQIVPWGIWRVLS*SKAMTV
Trigger: GACTGTCATTGCTTTTGACCATGACAGCACTCTCCA...TATACCCCAAGGCACTATTTGTAAAACATCCCGTGTATCACGTGTTATTCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 72 bp TGTGTGTGTGTGTTTGCAGGACAAAGCACTGAAAAGTaGCTAGGACCACTTCTGTACTCTATACAATGTTTC +
Preference number: 4 (lower is better)
Translates to: CVCVFAGQSTEK*LGPLLYSIQCF
Trigger: GAAACATTGTATAGAGTACAGAAGTGGTCCTAGCAACTTTTCAGTGCTTTGTCCTGCAAACACACACACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 72 bp GTTGAAGGAATTCAAGACACCTTAATGTTCCATGCTTaGGTAGTAGTCAATATAGCTAAAGGTGAGTTGCAA +
Preference number: 4 (lower is better)
Translates to: VEGIQDTLMFHA*VVVNIAKGELQ
Trigger: TTGCAACTCACCTTTAGCTATATTGACTACTACCAAAGCATGGAACATTAAGGTGTCTTGAATTCCTTCAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 72 bp GTCTGCAAAGTGTGTTCAGAGGAATCCTTAGGTGTTTaGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTT +
Preference number: 4 (lower is better)
Translates to: VCKVCSEESLGV*LLLLLLLLLLF
Trigger: AAACAACAACAACAACAACAACAACAACAACAACAAAACACCTAAGGATTCCTCTGAACACACTTTGCAGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 72 bp TCAAGATTACCACAGTCAAGTAGAGGGAAGAGCAATTaGCAGGATTATAGGGTTAAAGAAACTTTATATGCA +
Preference number: 4 (lower is better)
Translates to: SRLPQSSRGKSN*QDYRVKETLYA
Trigger: TGCATATAAAGTTTCTTTAACCCTATAATCCTGCAAATTGCTCTTCCCTCTACTTGACTGTGGTAATCTTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 72 bp TGTTCAGAGGAATCCTTAGGTGTTTTGTTGTTGTTGTaGTTGTTGTTGTTGTTGTTGTTTTCTGTTTATCTC +
Preference number: 4 (lower is better)
Translates to: CSEESLGVLLLL*LLLLLLFSVYL
Trigger: GAGATAAACAGAAAACAACAACAACAACAACAACAACAACAACAACAAAACACCTAAGGATTCCTCTGAACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
3UTR CAA 72 bp AAAGTGTGTTCAGAGGAATCCTTAGGTGTTTTGTTGTaGTTGTTGTTGTTGTTGTTGTTGTTGTTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: KVCSEESLGVLL*LLLLLLLLFSV
Trigger: AACAGAAAACAACAACAACAACAACAACAACAACAACAACAAAACACCTAAGGATTCCTCTGAACACACTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS TCA 90 bp ATCTTCCCCGTTTTCTGGACGGCTCAGGCAGCAGCGGAAGCATACTaGAGTCAGGCCACACAGGAGAAGCAGTGCGCCAACCACCACCAG +
Preference number: 5 (lower is better)
Translates to: IFPVFWTAQAAAEAY*SQATQEKQCANHHQ
Trigger: CTGGTGGTGGTTGGCGCACTGCTTCTCCTGTGTGGCCTGACTTCAGTATGCTTCCGCTGCTGCCTGAGCCGTCCAGAAAACGGGGAAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS GCA 90 bp GCCCAAGGAGCTGTGTGCATGAGCCACTGCCAGGATTCTCCGAGCTaGAGGGCCAAACACGGACTGCAGAGATGTAATGGTGCTCTGGAG +
Preference number: 5 (lower is better)
Translates to: AQGAVCMSHCQDSPS*RAKHGLQRCNGALE
Trigger: CTCCAGAGCACCATTACATCTCTGCAGTCCGTGTTTGGCCCTGCAGCTCGGAGAATCCTGGCAGTGGCTCATGCACACAGCTCCTTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS GCA 90 bp GGCAGCTGCTTTTCCTCTGGAACGGAGGGTAAATCAGGAACTTTCTaGCCACACCTTGCGACTGTGAAGCGGCTCATGCGAAGAGCTTCC +
Preference number: 5 (lower is better)
Translates to: GSCFSSGTEGKSGTF*PHLATVKRLMRRAS
Trigger: GGAAGCTCTTCGCATGAGCCGCTTCACAGTCGCAAGGTGTGGGCAGAAAGTTCCTGATTTACCCTCCGTTCCAGAGGAAAAGCAGCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS GCA 90 bp AGAAGCAGTGCGCCAACCACCACCAGCAACCATATATACCAGAGATaGACCCAGTCAGTAGTCAGGCAATGTTCAGTGTTGACACAGTTC +
Preference number: 5 (lower is better)
Translates to: RSSAPTTTSNHIYQR*TQSVVRQCSVLTQF
Trigger: GAACTGTGTCAACACTGAACATTGCCTGACTACTGACTGGGTGCATCTCTGGTATATATGGTTGCTGGTGGTGGTTGGCGCACTGCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS-3UTR CAA 90 bp GCAGGAAATTGGCAGGTGAAGGCAAGTCTTGGTGTCATAGAAACTGGGAGACTGAGGCAATGTTCAGTGTaGACACAGTTCTCCTCACTC +
Preference number: 5 (lower is better)
Translates to: AGNWQVKASLGVIETGRLRQCSV*TQFSSL
Trigger: GAGTGAGGAGAACTGTGTCAACACTGAACATTGCCT...CAGTCTCCCAGTTTCTATGACACCAAGACTTGCCTTCACCTGCCAATTTCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS GCA 72 bp AGGCAGCTGGCCCAAGGAGCTGTGTGCATGAGCCACTaGCAGGATTCTCCGAGCTGCAGGGCCAAACACGGA +
Preference number: 6 (lower is better)
Translates to: RQLAQGAVCMSH*QDSPSCRAKHG
Trigger: TCCGTGTTTGGCCCTGCAGCTCGGAGAATCCTGGCAGTGGCTCATGCACACAGCTCCTTGGGCCAGCTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS TCA 72 bp GTTTTCTGGACGGCTCAGGCAGCAGCGGAAGCATACTaGAGTCAGGCCACACAGGAGAAGCAGTGCGCCAAC +
Preference number: 6 (lower is better)
Translates to: VFWTAQAAAEAY*SQATQEKQCAN
Trigger: GTTGGCGCACTGCTTCTCCTGTGTGGCCTGACTTCAGTATGCTTCCGCTGCTGCCTGAGCCGTCCAGAAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS GCA 72 bp GCTGTGTGCATGAGCCACTGCCAGGATTCTCCGAGCTaGAGGGCCAAACACGGACTGCAGAGATGTAATGGT +
Preference number: 6 (lower is better)
Translates to: AVCMSHCQDSPS*RAKHGLQRCNG
Trigger: ACCATTACATCTCTGCAGTCCGTGTTTGGCCCTGCAGCTCGGAGAATCCTGGCAGTGGCTCATGCACACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS GCA 72 bp TCTGTCCCAGGAGATTCCTTCCCCGTGGGAGGCAGCTaGTTTTCCTCTGGAACGGAGGGTAAATCAGGAACT +
Preference number: 6 (lower is better)
Translates to: SVPGDSFPVGGS*FSSGTEGKSGT
Trigger: AGTTCCTGATTTACCCTCCGTTCCAGAGGAAAAGCAGCTGCCTCCCACGGGGAAGGAATCTCCTGGGACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032263.7
ENSMUST00000204741.3
CDS CAA 72 bp AGATGCACCCAGTCAGTAGTCAGGCAATGTTCAGTGTaGACACAGTTCTCCTCACTCCTGGCCCCAGGAAGC +
Preference number: 6 (lower is better)
Translates to: RCTQSVVRQCSV*TQFSSLLAPGS
Trigger: GCTTCCTGGGGCCAGGAGTGAGGAGAACTGTGTCAACACTGAACATTGCCTGACTACTGACTGGGTGCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS GCA 72 bp TTTTCCTCTGGAACGGAGGGTAAATCAGGAACTTTCTaGCCACACCTTGCGACTGTGAAGCGGCTCATGCGA +
Preference number: 6 (lower is better)
Translates to: FSSGTEGKSGTF*PHLATVKRLMR
Trigger: TCGCATGAGCCGCTTCACAGTCGCAAGGTGTGGGCAGAAAGTTCCTGATTTACCCTCCGTTCCAGAGGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7
CDS CCA 72 bp GGGCCAAACACGGACTGCAGAGATGTAATGGTGCTCTaGAGAGTGCTGTCATGGTCAAAAGCAATGACAGTC +
Preference number: 6 (lower is better)
Translates to: GPNTDCRDVMVL*RVLSWSKAMTV
Trigger: GACTGTCATTGCTTTTGACCATGACAGCACTCTCCAGAGCACCATTACATCTCTGCAGTCCGTGTTTGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032263.7