Pregenerated sensors for TMEM50A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028822Ensembl transcript IDs: ENSMUST00000030626.12, ENSMUST00000105863.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCTTTCCTGTGGTAAAAGCTGATGGGGCTCACGCCACACTGGGCTaGTGCAGTACACATAGGAGCTCTCATGATTCTAGCATTATACAA | + |
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Preference number: 1 (lower is better) Translates to: SFPVVKADGAHATLG*CSTHRSSHDSSIIQ Trigger: TTGTATAATGCTAGAATCATGAGAGCTCCTATGTGTACTGCAGCAGCCCAGTGTGGCGTGAGCCCCATCAGCTTTTACCACAGGAAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| 3UTR-3UTR GCA 90 bp | CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCCGCCTCCCGGGGATTAAAGGTATGTaGCACCACGCCTGGCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: LCRPGWPRTQKSACLRLPGIKGM*HHAWPA Trigger: TGCAGGCCAGGCGTGGTGGCACATACCTTTAATCCC...CGGGAGGCGGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| 3UTR-3UTR GCA 90 bp | ACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCCGCCCCACCACGCCTGGCCTaGATCACCAACTCTTTAGAC | + |
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Preference number: 2 (lower is better) Translates to: THFVDQAGLELRNPPASAPPRLA*ITNSLD Trigger: GTCTAAAGAGTTGGTGATGCAGGCCAGGCGTGGTGG...GGCGGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| 3UTR-3UTR GCA 90 bp | ATGGGGCTCACGCCACACTGGGCTGCTGCAGTACACATAGGAGCTCTCATGATTGCAAAAAGAAGCCCATaGACGGCGGCTGTGTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: MGLTPHWAAAVHIGALMIAKRSP*TAAVLQ Trigger: CTGCAACACAGCCGCCGTGCATGGGCTTCTTTTTGC...AATCATGAGAGCTCCTATGTGTACTGCAGCAGCCCAGTGTGGCGTGAGCCCCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| 3UTR-3UTR CCA 90 bp | CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCCGCCTCCCGTTACAAAAGACTGGGTaGGTGAGCAGGGTGCAAAAA | + |
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Preference number: 2 (lower is better) Translates to: LCRPGWPRTQKSACLRLPLQKTG*VSRVQK Trigger: TTTTTGCACCCTGCTCACCCACCCAGTCTTTTGTAA...CGGGAGGCGGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| 3UTR-3UTR GCA 90 bp | AAAATGTTTACACATTATTCAACACCGGACATAGAAGAGGCCGCGTTAATAAACCACGCCACACTGGGCTaGTGCAGTACACATAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: KMFTHYSTPDIEEAALINHATLG*CSTHRS Trigger: GCTCCTATGTGTACTGCAGCAGCCCAGTGTGGCGTG...GTTTATTAACGCGGCCTCTTCTATGTCCGGTGTTGAATAATGTGTAAACATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| 3UTR-3UTR TCA 90 bp | AAAATGTTTACACATTATTCAACACCGGACATAGAAGAGGCCGCGTTAATAAACAAAAGACTGGGTGGGTaGGCAGGGTGCAAAAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: KMFTHYSTPDIEEAALINKRLGG*AGCKKK Trigger: CTTCTTTTTGCACCCTGCTCACCCACCCAGTCTTTT...GTTTATTAACGCGGCCTCTTCTATGTCCGGTGTTGAATAATGTGTAAACATTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| 3UTR GCA 72 bp | GTGGTAAAAGCTGATGGGGCTCACGCCACACTGGGCTaGTGCAGTACACATAGGAGCTCTCATGATTCTAGC | + |
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Preference number: 3 (lower is better) Translates to: VVKADGAHATLG*CSTHRSSHDSS Trigger: GCTAGAATCATGAGAGCTCCTATGTGTACTGCAGCAGCCCAGTGTGGCGTGAGCCCCATCAGCTTTTACCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS-3UTR CCA 90 bp | CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCCGCCTCCCGATGCGAGCTCCTGTCTaGCCCAGACAGCCTTCGCTG | + |
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Preference number: 4 (lower is better) Translates to: LCRPGWPRTQKSACLRLPMRAPV*PRQPSL Trigger: CAGCGAAGGCTGTCTGGGCCAGACAGGAGCTCGCAT...CGGGAGGCGGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS-3UTR GCA 90 bp | CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCCGCCTCCCGCTGTCGCCTCGCACTTaGCCGTTCGATACTGCGTTA | + |
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Preference number: 4 (lower is better) Translates to: LCRPGWPRTQKSACLRLPLSPRT*PFDTAL Trigger: TAACGCAGTATCGAACGGGCAAGTGCGAGGCGACAG...CGGGAGGCGGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS-3UTR CCA 90 bp | ATGGGGCTCACGCCACACTGGGCTGCTGCAGTACACATAGGAGCTCTCATGATTAAGATGAAGGCATTCTaGAAAAATACAGCAATCCCA | + |
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Preference number: 4 (lower is better) Translates to: MGLTPHWAAAVHIGALMIKMKAF*KNTAIP Trigger: TGGGATTGCTGTATTTTTCCAGAATGCCTTCATCTT...AATCATGAGAGCTCCTATGTGTACTGCAGCAGCCCAGTGTGGCGTGAGCCCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS-3UTR TCA 90 bp | GAATCCTCACCCCAAAGACTCCACCATTTCTCCATCAACAACTCTTTTGTTTTTGCCACAGGTATGGTATaGATGGTTGAATTGATCCAT | + |
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Preference number: 4 (lower is better) Translates to: ESSPQRLHHFSINNSFVFATGMV*MVELIH Trigger: ATGGATCAATTCAACCATTCATACCATACCTGTGGC...AAAAACAAAAGAGTTGTTGATGGAGAAATGGTGGAGTCTTTGGGGTGAGGATTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS-3UTR TCA 90 bp | CATAGGAGCTCTCATGATTCTAGCATTATACAATTTCAAGCTGAGATTATACTCAGGCTATGGTTGCTATaGCGCCACAGGTATGGTATG | + |
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Preference number: 4 (lower is better) Translates to: HRSSHDSSIIQFQAEIILRLWLL*RHRYGM Trigger: CATACCATACCTGTGGCGTCATAGCAACCATAGCCT...GAGTATAATCTCAGCTTGAAATTGTATAATGCTAGAATCATGAGAGCTCCTATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS-3UTR TCA 90 bp | CATAGGAGCTCTCATGATTCTAGCATTATACAATTTCAAGCTGAGATTATACTCCCGTACGGCCAAACTTaGAAACCAGCCCTCCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: HRSSHDSSIIQFQAEIILPYGQT*KPALQK Trigger: TTTTTGGAGGGCTGGTTTTCAAGTTTGGCCGTACGG...GAGTATAATCTCAGCTTGAAATTGTATAATGCTAGAATCATGAGAGCTCCTATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS-3UTR GCA 90 bp | AGTACACATAGGAGCTCTCATGATTCTAGCATTATACAATTTCAAGCTGAGATTGAGGAAGGCTATGGTTaGTATGACGCCACAGGTATG | + |
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Preference number: 4 (lower is better) Translates to: STHRSSHDSSIIQFQAEIEEGYG*YDATGM Trigger: CATACCTGTGGCGTCATAGCAACCATAGCCTTCCTC...AATCTCAGCTTGAAATTGTATAATGCTAGAATCATGAGAGCTCCTATGTGTACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS GCA 90 bp | ACAGCCTTCGCTGTAGCTGTCGCCTCGCACTTGCCCGTTCGATACTaGGTTAATCATGAGGAAGGCTATGGTTGCTATGACGCCACAGGT | + |
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Preference number: 5 (lower is better) Translates to: TAFAVAVASHLPVRY*VNHEEGYGCYDATG Trigger: ACCTGTGGCGTCATAGCAACCATAGCCTTCCTCATGATTAACGCAGTATCGAACGGGCAAGTGCGAGGCGACAGCTACAGCGAAGGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030626.12 ENSMUST00000105863.2 |
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| CDS TCA 90 bp | GCTATGGTTGCTATGACGCCACAGGTATGGTATGAATGGTTGAATTaGTCCATCCTGGGGTACATGACAGCCGCGTCTATGATGATCCAC | + |
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Preference number: 5 (lower is better) Translates to: AMVAMTPQVWYEWLN*SILGYMTAASMMIH Trigger: GTGGATCATCATAGACGCGGCTGTCATGTACCCCAGGATGGATCAATTCAACCATTCATACCATACCTGTGGCGTCATAGCAACCATAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030626.12 ENSMUST00000105863.2 |
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| CDS TCA 90 bp | AATCATGAGGAAGGCTATGGTTGCTATGACGCCACAGGTATGGTATaGATGGTTGAATTGATCCATCCTGGGGTACATGACAGCCGCGTC | + |
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Preference number: 5 (lower is better) Translates to: NHEEGYGCYDATGMV*MVELIHPGVHDSRV Trigger: GACGCGGCTGTCATGTACCCCAGGATGGATCAATTCAACCATTCATACCATACCTGTGGCGTCATAGCAACCATAGCCTTCCTCATGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030626.12 ENSMUST00000105863.2 |
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| CDS-3UTR CAA 90 bp | AAAATGTTTACACATTATTCAACACCGGACATAGAAGAGGCCGCGTTAATAAACTCCGTACGGCCAAACTaGAAAACCAGCCCTCCAAAA | + |
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Preference number: 5 (lower is better) Translates to: KMFTHYSTPDIEEAALINSVRPN*KTSPPK Trigger: TTTTGGAGGGCTGGTTTTCAAGTTTGGCCGTACGGA...GTTTATTAACGCGGCCTCTTCTATGTCCGGTGTTGAATAATGTGTAAACATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030626.12 |
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| CDS CAA 72 bp | GCCCAGACAGCCTTCGCTGTAGCTGTCGCCTCGCACTaGCCCGTTCGATACTGCGTTAATCATGAGGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: AQTAFAVAVASH*PVRYCVNHEEG Trigger: GCCTTCCTCATGATTAACGCAGTATCGAACGGGCAAGTGCGAGGCGACAGCTACAGCGAAGGCTGTCTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030626.12 ENSMUST00000105863.2 |
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| CDS CAA 90 bp | TCCTGTCTGGCCCAGACAGCCTTCGCTGTAGCTGTCGCCTCGCACTaGCCCGTTCGATACTGCGTTAATCATGAGGAAGGCTATGGTTGC | + |
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Preference number: 6 (lower is better) Translates to: SCLAQTAFAVAVASH*PVRYCVNHEEGYGC Trigger: GCAACCATAGCCTTCCTCATGATTAACGCAGTATCGAACGGGCAAGTGCGAGGCGACAGCTACAGCGAAGGCTGTCTGGGCCAGACAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030626.12 ENSMUST00000105863.2 |
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| CDS GCA 72 bp | GCTGTAGCTGTCGCCTCGCACTTGCCCGTTCGATACTaGGTTAATCATGAGGAAGGCTATGGTTGCTATGAC | + |
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Preference number: 6 (lower is better) Translates to: AVAVASHLPVRY*VNHEEGYGCYD Trigger: GTCATAGCAACCATAGCCTTCCTCATGATTAACGCAGTATCGAACGGGCAAGTGCGAGGCGACAGCTACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030626.12 ENSMUST00000105863.2 |
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| CDS TCA 72 bp | GAAGGCTATGGTTGCTATGACGCCACAGGTATGGTATaGATGGTTGAATTGATCCATCCTGGGGTACATGAC | + |
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Preference number: 6 (lower is better) Translates to: EGYGCYDATGMV*MVELIHPGVHD Trigger: GTCATGTACCCCAGGATGGATCAATTCAACCATTCATACCATACCTGTGGCGTCATAGCAACCATAGCCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030626.12 ENSMUST00000105863.2 |
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