Pregenerated sensors for TMEM47 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025666Ensembl transcript IDs: ENSMUST00000026760.3, ENSMUST00000171953.8
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTGGCTTGCCATGTGGACAGAGAATGGAAGCTCTATCATATTCTTaGTATTGGTCTAACTGCACACTGTATCCTTCAACAAGCCTCACT | + |
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Preference number: 1 (lower is better) Translates to: FGLPCGQRMEALSYS*YWSNCTLYPSTSLT Trigger: AGTGAGGCTTGTTGAAGGATACAGTGTGCAGTTAGACCAATATCAAGAATATGATAGAGCTTCCATTCTCTGTCCACATGGCAAGCCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR GCA 90 bp | TGGTCTAACTGCACACTGTATCCTTCAACAAGCCTCACTGATGCCTaGTGCAAAGTTTTCATCGCCTCTTATTCATTCAAGAATAAAGAG | + |
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Preference number: 1 (lower is better) Translates to: WSNCTLYPSTSLTDA*CKVFIASYSFKNKE Trigger: CTCTTTATTCTTGAATGAATAAGAGGCGATGAAAACTTTGCAGCAGGCATCAGTGAGGCTTGTTGAAGGATACAGTGTGCAGTTAGACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR CCA 90 bp | TATAAACAGGTGATAAGGGCTCCAACAGTAGAAATGTCAGAGCAATaGAACTTTTACATGTTGCTTATGCAGCTGTTTCCCTGCAGGCAA | + |
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Preference number: 1 (lower is better) Translates to: YKQVIRAPTVEMSEQ*NFYMLLMQLFPCRQ Trigger: TTGCCTGCAGGGAAACAGCTGCATAAGCAACATGTAAAAGTTCCATTGCTCTGACATTTCTACTGTTGGAGCCCTTATCACCTGTTTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR GCA 90 bp | AAGAGACTCTGGCAATTCTCATTCCAACTAGCTTCTCAAAATGGTTaGTGTCATACAGATCCTTCACATGTCAAGAGAAATGGCATAAGC | + |
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Preference number: 1 (lower is better) Translates to: KRLWQFSFQLASQNG*CHTDPSHVKRNGIS Trigger: GCTTATGCCATTTCTCTTGACATGTGAAGGATCTGTATGACAGCAACCATTTTGAGAAGCTAGTTGGAATGAGAATTGCCAGAGTCTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR GCA 90 bp | GATCCTTCACATGTCAAGAGAAATGGCATAAGCATATTGGAAGTTTaGAGCATATGCCTATATCTAATCAGCATTCTTAATTTGTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: DPSHVKRNGISILEV*SICLYLISILNLCR Trigger: CCTGCACAAATTAAGAATGCTGATTAGATATAGGCATATGCTGCAAACTTCCAATATGCTTATGCCATTTCTCTTGACATGTGAAGGATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR GCA 90 bp | AATATCTGTGCTTCAACCTGTAACATAGCCTATCACTTTTTGGCTTaGCATGTGGACAGAGAATGGAAGCTCTATCATATTCTTGATATT | + |
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Preference number: 1 (lower is better) Translates to: NICASTCNIAYHFLA*HVDREWKLYHILDI Trigger: AATATCAAGAATATGATAGAGCTTCCATTCTCTGTCCACATGGCAAGCCAAAAAGTGATAGGCTATGTTACAGGTTGAAGCACAGATATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR CCA 90 bp | TCAAAATGGTTGCTGTCATACAGATCCTTCACATGTCAAGAGAAATaGCATAAGCATATTGGAAGTTTGCAGCATATGCCTATATCTAAT | + |
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Preference number: 1 (lower is better) Translates to: SKWLLSYRSFTCQEK*HKHIGSLQHMPISN Trigger: ATTAGATATAGGCATATGCTGCAAACTTCCAATATGCTTATGCCATTTCTCTTGACATGTGAAGGATCTGTATGACAGCAACCATTTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR CAA 90 bp | AGGGCTCCAACAGTAGAAATGTCAGAGCAATGGAACTTTTACATGTaGCTTATGCAGCTGTTTCCCTGCAGGCAAAAAGAGACTCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: RAPTVEMSEQWNFYM*LMQLFPCRQKETLA Trigger: TGCCAGAGTCTCTTTTTGCCTGCAGGGAAACAGCTGCATAAGCAACATGTAAAAGTTCCATTGCTCTGACATTTCTACTGTTGGAGCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR-3UTR TCA 90 bp | AAACAGGTGATAAGGGCTCCAACAGTAGAAATGTCAGAGCAATGGAACTTTTACACTGAGCAAACTGCTTaGGGCTCCACAAGTGTTTTA | + |
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Preference number: 2 (lower is better) Translates to: KQVIRAPTVEMSEQWNFYTEQTA*GSTSVL Trigger: TAAAACACTTGTGGAGCCTCAAGCAGTTTGCTCAGT...GTAAAAGTTCCATTGCTCTGACATTTCTACTGTTGGAGCCCTTATCACCTGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR-3UTR CCA 90 bp | GCTTCTCAAAATGGTTGCTGTCATACAGATCCTTCACATGTCAAGAGAAATGGCTTTCTCTTTTTCATGTaGTGTGTGTGTGTGTGTGTG | + |
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Preference number: 2 (lower is better) Translates to: ASQNGCCHTDPSHVKRNGFLFFM*CVCVCV Trigger: CACACACACACACACACACCACATGAAAAAGAGAAA...GCCATTTCTCTTGACATGTGAAGGATCTGTATGACAGCAACCATTTTGAGAAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR CAA 90 bp | AAAGAGACTCTGGCAATTCTCATTCCAACTAGCTTCTCAAAATGGTaGCTGTCATACAGATCCTTCACATGTCAAGAGAAATGGCATAAG | + |
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Preference number: 2 (lower is better) Translates to: KETLAILIPTSFSKW*LSYRSFTCQEKWHK Trigger: CTTATGCCATTTCTCTTGACATGTGAAGGATCTGTATGACAGCAACCATTTTGAGAAGCTAGTTGGAATGAGAATTGCCAGAGTCTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR-3UTR GCA 90 bp | GCTTCTCAAAATGGTTGCTGTCATACAGATCCTTCACATGTCAAGAGAAATGGCAGCATATTGGAAGTTTaGAGCATATGCCTATATCTA | + |
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Preference number: 2 (lower is better) Translates to: ASQNGCCHTDPSHVKRNGSILEV*SICLYL Trigger: TAGATATAGGCATATGCTGCAAACTTCCAATATGCT...GCCATTTCTCTTGACATGTGAAGGATCTGTATGACAGCAACCATTTTGAGAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR-3UTR GCA 90 bp | TCACTGATGCCTGCTGCAAAGTTTTCATCGCCTCTTATTCATTCAAGAATAAAGGCTTCTCAAAATGGTTaGTGTCATACAGATCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: SLMPAAKFSSPLIHSRIKASQNG*CHTDPS Trigger: TGAAGGATCTGTATGACAGCAACCATTTTGAGAAGC...CTTTATTCTTGAATGAATAAGAGGCGATGAAAACTTTGCAGCAGGCATCAGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR CAA 90 bp | ATTACAAATATCTGTGCTTCAACCTGTAACATAGCCTATCACTTTTaGGCTTGCCATGTGGACAGAGAATGGAAGCTCTATCATATTCTT | + |
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Preference number: 2 (lower is better) Translates to: ITNICASTCNIAYHF*ACHVDREWKLYHIL Trigger: AAGAATATGATAGAGCTTCCATTCTCTGTCCACATGGCAAGCCAAAAAGTGATAGGCTATGTTACAGGTTGAAGCACAGATATTTGTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR-3UTR CAA 90 bp | CTAACTGCACACTGTATCCTTCAACAAGCCTCACTGATGCCTGCTGCAAAGTTTAAGCTGGTTATGATGTaGACACCCAAAGGCAAGGAT | + |
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Preference number: 3 (lower is better) Translates to: LTAHCILQQASLMPAAKFKLVMM*TPKGKD Trigger: ATCCTTGCCTTTGGGTGTCAACATCATAACCAGCTT...AAACTTTGCAGCAGGCATCAGTGAGGCTTGTTGAAGGATACAGTGTGCAGTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR GCA 72 bp | TGCACACTGTATCCTTCAACAAGCCTCACTGATGCCTaGTGCAAAGTTTTCATCGCCTCTTATTCATTCAAG | + |
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Preference number: 3 (lower is better) Translates to: CTLYPSTSLTDA*CKVFIASYSFK Trigger: CTTGAATGAATAAGAGGCGATGAAAACTTTGCAGCAGGCATCAGTGAGGCTTGTTGAAGGATACAGTGTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR TCA 72 bp | AAAGAGGTCCTCTCACAAGAGGCTGTGGTCTGTAGCTaGAATCCCTATCCAAATATCACATTTCTTATTCTG | + |
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Preference number: 3 (lower is better) Translates to: KEVLSQEAVVCS*NPYPNITFLIL Trigger: CAGAATAAGAAATGTGATATTTGGATAGGGATTTCAGCTACAGACCACAGCCTCTTGTGAGAGGACCTCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR GCA 72 bp | ACACTGTATCCTTCAACAAGCCTCACTGATGCCTGCTaGAAAGTTTTCATCGCCTCTTATTCATTCAAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: TLYPSTSLTDAC*KVFIASYSFKN Trigger: ATTCTTGAATGAATAAGAGGCGATGAAAACTTTGCAGCAGGCATCAGTGAGGCTTGTTGAAGGATACAGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR CCA 72 bp | CATTCAAGAATAAAGAGGTCCTCTCACAAGAGGCTGTaGTCTGTAGCTGAAATCCCTATCCAAATATCACAT | + |
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Preference number: 3 (lower is better) Translates to: HSRIKRSSHKRL*SVAEIPIQISH Trigger: ATGTGATATTTGGATAGGGATTTCAGCTACAGACCACAGCCTCTTGTGAGAGGACCTCTTTATTCTTGAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR-3UTR CAA 90 bp | TCACTGATGCCTGCTGCAAAGTTTTCATCGCCTCTTATTCATTCAAGAATAAAGTGGAACTTTTACATGTaGCTTATGCAGCTGTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: SLMPAAKFSSPLIHSRIKWNFYM*LMQLFP Trigger: GGGAAACAGCTGCATAAGCAACATGTAAAAGTTCCA...CTTTATTCTTGAATGAATAAGAGGCGATGAAAACTTTGCAGCAGGCATCAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR-3UTR CAA 90 bp | CAGTATGGTAATGGCTTGTGGTGTAGAAGAATAAGCTTGTTACATATGGACAATACATGTCTCCAAACGTaGACTTCCTTCCCAAGAGAT | + |
|
Preference number: 3 (lower is better) Translates to: QYGNGLWCRRISLLHMDNTCLQT*TSFPRD Trigger: ATCTCTTGGGAAGGAAGTCAACGTTTGGAGACATGT...ATTGTCCATATGTAACAAGCTTATTCTTCTACACCACAAGCCATTACCATACTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR TCA 72 bp | CCATGTGGACAGAGAATGGAAGCTCTATCATATTCTTaGTATTGGTCTAACTGCACACTGTATCCTTCAACA | + |
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Preference number: 3 (lower is better) Translates to: PCGQRMEALSYS*YWSNCTLYPST Trigger: TGTTGAAGGATACAGTGTGCAGTTAGACCAATATCAAGAATATGATAGAGCTTCCATTCTCTGTCCACATGG 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR CCA 72 bp | GCCTATCACTTTTTGGCTTGCCATGTGGACAGAGAATaGAAGCTCTATCATATTCTTGATATTGGTCTAACT | + |
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Preference number: 3 (lower is better) Translates to: AYHFLACHVDRE*KLYHILDIGLT Trigger: AGTTAGACCAATATCAAGAATATGATAGAGCTTCCATTCTCTGTCCACATGGCAAGCCAAAAAGTGATAGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| 3UTR-3UTR CAA 90 bp | CTCATTAGATGCCCAAATGGCAGTTTCAAATTCCAAAGCAAAGTAACCAATAACAAGCATATTGGAAGTTaGCAGCATATGCCTATATCT | + |
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Preference number: 3 (lower is better) Translates to: LIRCPNGSFKFQSKVTNNKHIGS*QHMPIS Trigger: AGATATAGGCATATGCTGCAAACTTCCAATATGCTT...GTTATTGGTTACTTTGCTTTGGAATTTGAAACTGCCATTTGGGCATCTAATGAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR TCA 72 bp | AAAGGCAAGGATATTAAATCAACTGAGCAAACTGCTTaGGGCTCCACAAGTGTTTTAGAAAATAGTGTTAGA | + |
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Preference number: 3 (lower is better) Translates to: KGKDIKSTEQTA*GSTSVLENSVR Trigger: TCTAACACTATTTTCTAAAACACTTGTGGAGCCTCAAGCAGTTTGCTCAGTTGATTTAATATCCTTGCCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR TCA 72 bp | AGGTTAGTGTGCGCTGCTCTGTACAAAAATACAGTCTaGATAAATTACATTGCTAGCCATACAATTAGACAA | + |
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Preference number: 3 (lower is better) Translates to: RLVCAALYKNTV*INYIASHTIRQ Trigger: TTGTCTAATTGTATGGCTAGCAATGTAATTTATTCAGACTGTATTTTTGTACAGAGCAGCGCACACTAACCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| CDS-3UTR GCA 90 bp | CTAACTGCACACTGTATCCTTCAACAAGCCTCACTGATGCCTGCTGCAAAGTTTCAAACCCACCAGGAATaGAATGAGAATGATGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LTAHCILQQASLMPAAKFQTHQE*NENDGS Trigger: GCTGCCATCATTCTCATTGCATTCCTGGTGGGTTTG...AAACTTTGCAGCAGGCATCAGTGAGGCTTGTTGAAGGATACAGTGTGCAGTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| CDS-3UTR TCA 90 bp | CTAACTGCACACTGTATCCTTCAACAAGCCTCACTGATGCCTGCTGCAAAGTTTAATGGCACCCCCAAATaGAAATATAGTTGCACCCCA | + |
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Preference number: 4 (lower is better) Translates to: LTAHCILQQASLMPAAKFNGTPK*KYSCTP Trigger: TGGGGTGCAACTATATTTTCATTTGGGGGTGCCATT...AAACTTTGCAGCAGGCATCAGTGAGGCTTGTTGAAGGATACAGTGTGCAGTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026760.3 |
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| CDS-3UTR GCA 90 bp | TTCTCATTCCAACTAGCTTCTCAAAATGGTTGCTGTCATACAGATCCTTCACATCAAACCCACCAGGAATaGAATGAGAATGATGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FSFQLASQNGCCHTDPSHQTHQE*NENDGS Trigger: GCTGCCATCATTCTCATTGCATTCCTGGTGGGTTTG...ATGTGAAGGATCTGTATGACAGCAACCATTTTGAGAAGCTAGTTGGAATGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR GCA 90 bp | AATGGTTGCTGTCATACAGATCCTTCACATGTCAAGAGAAATGGCATAAGCATAACCAGGCTGCAGACCTaGAAAACAACTGCTGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: NGCCHTDPSHVKRNGISITRLQT*KTTAAK Trigger: TTTTGCAGCAGTTGTTTTGCAGGTCTGCAGCCTGGT...TATGCTTATGCCATTTCTCTTGACATGTGAAGGATCTGTATGACAGCAACCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR CAA 72 bp | ACAGTAGAAATGTCAGAGCAATGGAACTTTTACATGTaGCTTATGCAGCTGTTTCCCTGCAGGCAAAAAGAG | + |
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Preference number: 4 (lower is better) Translates to: TVEMSEQWNFYM*LMQLFPCRQKE Trigger: CTCTTTTTGCCTGCAGGGAAACAGCTGCATAAGCAACATGTAAAAGTTCCATTGCTCTGACATTTCTACTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR TCA 90 bp | AATGGTTGCTGTCATACAGATCCTTCACATGTCAAGAGAAATGGCATAAGCATAGGCCATAACCCCAATTaGACTCGTGGTAAATTTTCA | + |
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Preference number: 4 (lower is better) Translates to: NGCCHTDPSHVKRNGISIGHNPN*TRGKFS Trigger: TGAAAATTTACCACGAGTTCAATTGGGGTTATGGCC...TATGCTTATGCCATTTCTCTTGACATGTGAAGGATCTGTATGACAGCAACCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR TCA 90 bp | ACACAAATCTTTTGTTGGATGGTTAGTTTCTCTTTTTCATGTGGTGTGTGTGTGAATGGCACCCCCAAATaGAAATATAGTTGCACCCCA | + |
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Preference number: 4 (lower is better) Translates to: TQIFCWMVSFSFSCGVCVNGTPK*KYSCTP Trigger: TGGGGTGCAACTATATTTTCATTTGGGGGTGCCATT...CACACACACACCACATGAAAAAGAGAAACTAACCATCCAACAAAAGATTTGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR GCA 90 bp | AATGGTTGCTGTCATACAGATCCTTCACATGTCAAGAGAAATGGCATAAGCATACTGCAAAACAACTGCTaGAAAAAGCATGACAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: NGCCHTDPSHVKRNGISILQNNC*KKHDSN Trigger: GTTGCTGTCATGCTTTTTGCAGCAGTTGTTTTGCAG...TATGCTTATGCCATTTCTCTTGACATGTGAAGGATCTGTATGACAGCAACCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR GCA 90 bp | TGCAGCATATGCCTATATCTAATCAGCATTCTTAATTTGTGCAGGTCCCTAAAAGACCTGCAAAACAACTaGTGCAAAAAGCATGACAGC | + |
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Preference number: 4 (lower is better) Translates to: CSICLYLISILNLCRSLKDLQNN*CKKHDS Trigger: GCTGTCATGCTTTTTGCAGCAGTTGTTTTGCAGGTC...TTTTAGGGACCTGCACAAATTAAGAATGCTGATTAGATATAGGCATATGCTGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR GCA 90 bp | TCTTTTGTTGGATGGTTAGTTTCTCTTTTTCATGTGGTGTGTGTGTGTTTGTTTACCAGGCTGCAGACCTaGAAAACAACTGCTGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: SFVGWLVSLFHVVCVCLFTRLQT*KTTAAK Trigger: TTTTGCAGCAGTTGTTTTGCAGGTCTGCAGCCTGGT...AAACAAACACACACACACCACATGAAAAAGAGAAACTAACCATCCAACAAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171953.8 |
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| CDS-3UTR GCA 90 bp | AGAAATGGCATAAGCATATTGGAAGTTTGCAGCATATGCCTATATCTAATCAGCGATAAAGAACCAGGCTaGAGACCTGCAAAACAACTG | + |
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Preference number: 4 (lower is better) Translates to: RNGISILEVCSICLYLISDKEPG*RPAKQL Trigger: CAGTTGTTTTGCAGGTCTGCAGCCTGGTTCTTTATC...GCTGATTAGATATAGGCATATGCTGCAAACTTCCAATATGCTTATGCCATTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR GCA 90 bp | TGCAGCATATGCCTATATCTAATCAGCATTCTTAATTTGTGCAGGTCCCTAAAACTGCAAAACAACTGCTaGAAAAAGCATGACAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: CSICLYLISILNLCRSLKLQNNC*KKHDSN Trigger: GTTGCTGTCATGCTTTTTGCAGCAGTTGTTTTGCAG...TTTTAGGGACCTGCACAAATTAAGAATGCTGATTAGATATAGGCATATGCTGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR GCA 90 bp | TCTTTTGTTGGATGGTTAGTTTCTCTTTTTCATGTGGTGTGTGTGTGTTTGTTTGATAAAGAACCAGGCTaGAGACCTGCAAAACAACTG | + |
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Preference number: 4 (lower is better) Translates to: SFVGWLVSLFHVVCVCLFDKEPG*RPAKQL Trigger: CAGTTGTTTTGCAGGTCTGCAGCCTGGTTCTTTATC...AAACAAACACACACACACCACATGAAAAAGAGAAACTAACCATCCAACAAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171953.8 |
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| CDS-3UTR TCA 90 bp | ATCTTTTGTTGGATGGTTAGTTTCTCTTTTTCATGTGGTGTGTGTGTGTTTGTTGGCCATAACCCCAATTaGACTCGTGGTAAATTTTCA | + |
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Preference number: 4 (lower is better) Translates to: IFCWMVSFSFSCGVCVFVGHNPN*TRGKFS Trigger: TGAAAATTTACCACGAGTTCAATTGGGGTTATGGCC...AACAAACACACACACACCACATGAAAAAGAGAAACTAACCATCCAACAAAAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000171953.8 |
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| CDS-3UTR CCA 90 bp | TCATACAGATCCTTCACATGTCAAGAGAAATGGCATAAGCATATTGGAAGTTTGTTCAATGAACTTGATTaGATAAAGAACCAGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: SYRSFTCQEKWHKHIGSLFNELD*IKNQAA Trigger: TGCAGCCTGGTTCTTTATCCAATCAAGTTCATTGAA...CAAACTTCCAATATGCTTATGCCATTTCTCTTGACATGTGAAGGATCTGTATGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR CCA 90 bp | AGAAATGGCATAAGCATATTGGAAGTTTGCAGCATATGCCTATATCTAATCAGCTTCAATGAACTTGATTaGATAAAGAACCAGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: RNGISILEVCSICLYLISFNELD*IKNQAA Trigger: TGCAGCCTGGTTCTTTATCCAATCAAGTTCATTGAA...GCTGATTAGATATAGGCATATGCTGCAAACTTCCAATATGCTTATGCCATTTCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| 3UTR CAA 72 bp | CAGTATGGTAATGGCTTGTGGTGTAGAAGAATAAGCTaGTTACATATGGACAATTGTTTGCTGCAAAATTTT | + |
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Preference number: 4 (lower is better) Translates to: QYGNGLWCRRIS*LHMDNCLLQNF Trigger: AAAATTTTGCAGCAAACAATTGTCCATATGTAACAAGCTTATTCTTCTACACCACAAGCCATTACCATACTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS GCA 90 bp | AGAATGATGGCAGCACCGCCCAGGAGTAAAGCCAGAGTAGCAATCTaGCAATCGCTGCCGAGAGTGGATTCGCAATGCCAGATATCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RMMAAPPRSKARVAI*QSLPRVDSQCQISR Trigger: CCTGGATATCTGGCATTGCGAATCCACTCTCGGCAGCGATTGGCAGATTGCTACTCTGGCTTTACTCCTGGGCGGTGCTGCCATCATTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR CAA 90 bp | AAACAGGTGATAAGGGCTCCAACAGTAGAAATGTCAGAGCAATGGAACTTTTACACCAGCCCGACCAGCTaGAGCGGGGTCAGCACCGAC | + |
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Preference number: 5 (lower is better) Translates to: KQVIRAPTVEMSEQWNFYTSPTS*SGVSTD Trigger: GTCGGTGCTGACCCCGCTCAAGCTGGTCGGGCTGGT...GTAAAAGTTCCATTGCTCTGACATTTCTACTGTTGGAGCCCTTATCACCTGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR CAA 90 bp | TTCTCATTCCAACTAGCTTCTCAAAATGGTTGCTGTCATACAGATCCTTCACATACCAGCCCGACCAGCTaGAGCGGGGTCAGCACCGAC | + |
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Preference number: 5 (lower is better) Translates to: FSFQLASQNGCCHTDPSHTSPTS*SGVSTD Trigger: GTCGGTGCTGACCCCGCTCAAGCTGGTCGGGCTGGT...ATGTGAAGGATCTGTATGACAGCAACCATTTTGAGAAGCTAGTTGGAATGAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR CAA 90 bp | AAACAGGTGATAAGGGCTCCAACAGTAGAAATGTCAGAGCAATGGAACTTTTACGTGATCCCACACAGATaGAAATCAAACCCACCAGGA | + |
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Preference number: 5 (lower is better) Translates to: KQVIRAPTVEMSEQWNFYVIPHR*KSNPPG Trigger: TCCTGGTGGGTTTGATTTCAATCTGTGTGGGATCAC...GTAAAAGTTCCATTGCTCTGACATTTCTACTGTTGGAGCCCTTATCACCTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS-3UTR CAA 90 bp | TTCTCATTCCAACTAGCTTCTCAAAATGGTTGCTGTCATACAGATCCTTCACATGTGATCCCACACAGATaGAAATCAAACCCACCAGGA | + |
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Preference number: 5 (lower is better) Translates to: FSFQLASQNGCCHTDPSHVIPHR*KSNPPG Trigger: TCCTGGTGGGTTTGATTTCAATCTGTGTGGGATCAC...ATGTGAAGGATCTGTATGACAGCAACCATTTTGAGAAGCTAGTTGGAATGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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| CDS GCA 72 bp | GCAGCACCGCCCAGGAGTAAAGCCAGAGTAGCAATCTaGCAATCGCTGCCGAGAGTGGATTCGCAATGCCAG | + |
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Preference number: 6 (lower is better) Translates to: AAPPRSKARVAI*QSLPRVDSQCQ Trigger: CTGGCATTGCGAATCCACTCTCGGCAGCGATTGGCAGATTGCTACTCTGGCTTTACTCCTGGGCGGTGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026760.3 ENSMUST00000171953.8 |
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