Pregenerated sensors for TMEM45A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022754Ensembl transcript IDs: ENSMUST00000023435.6, ENSMUST00000232373.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGGAAGTACAAACAGCATGGAGTCAGCCTCAGACAAGTGTTCTTaGGACCAGAGGTCAAGAAACAAAGCCATGAACAAAGGCAACGCA | + |
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Preference number: 1 (lower is better) Translates to: TGSTNSMESASDKCS*DQRSRNKAMNKGNA Trigger: TGCGTTGCCTTTGTTCATGGCTTTGTTTCTTGACCTCTGGTCTCAAGAACACTTGTCTGAGGCTGACTCCATGCTGTTTGTACTTCCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR CAA 90 bp | AACTGGAAGTACAAACAGCATGGAGTCAGCCTCAGACAAGTGTTCTaGAGACCAGAGGTCAAGAAACAAAGCCATGAACAAAGGCAACGC | + |
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Preference number: 2 (lower is better) Translates to: NWKYKQHGVSLRQVF*RPEVKKQSHEQRQR Trigger: GCGTTGCCTTTGTTCATGGCTTTGTTTCTTGACCTCTGGTCTCAAGAACACTTGTCTGAGGCTGACTCCATGCTGTTTGTACTTCCAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR TCA 90 bp | CGGTACCTTGTATCCTGGAGTACACTCACTTACAGCTCAAGAGATATTTTTGGGCAAGAAACAAAGCCATaGACAAAGGCAACGCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: RYLVSWSTLTYSSRDIFGQETKP*TKATQR Trigger: CCTTTGCGTTGCCTTTGTTCATGGCTTTGTTTCTTG...CCCAAAAATATCTCTTGAGCTGTAAGTGAGTGTACTCCAGGATACAAGGTACCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR CCA 90 bp | GGAAGCATTCCTGAACTGGTCTCAGACTCAGATGTTCTGAGAACTCCCTGGGTTAAAAATGAGGATTTTTaGTTTCTGCACCAAGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: GSIPELVSDSDVLRTPWVKNEDF*FLHQGA Trigger: TGCACCTTGGTGCAGAAACCAAAAATCCTCATTTTT...AACCCAGGGAGTTCTCAGAACATCTGAGTCTGAGACCAGTTCAGGAATGCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR CCA 90 bp | GGAAGCATTCCTGAACTGGTCTCAGACTCAGATGTTCTGAGAACTCCCTGGGTTACTGCTCCCAGTTTTTaGGCAAGAAGATTATATTCA | + |
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Preference number: 2 (lower is better) Translates to: GSIPELVSDSDVLRTPWVTAPSF*ARRLYS Trigger: TGAATATAATCTTCTTGCCCAAAAACTGGGAGCAGT...AACCCAGGGAGTTCTCAGAACATCTGAGTCTGAGACCAGTTCAGGAATGCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR GCA 90 bp | GGAGTTTCTTGGCCCACAGGGCAAAAAGACTTTTTACCTAGGATTGTAGAAAGGTTCTGCTCTACCTTTTaGATCAAGCTCTCCATAGAG | + |
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Preference number: 2 (lower is better) Translates to: GVSWPTGQKDFLPRIVERFCSTF*IKLSIE Trigger: CTCTATGGAGAGCTTGATGCAAAAGGTAGAGCAGAA...CCTTTCTACAATCCTAGGTAAAAAGTCTTTTTGCCCTGTGGGCCAAGAAACTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR CCA 90 bp | GTATCCTGGAGTACACTCACTTACAGCTCAAGAGATATTTTTGGGTACTCACATGAGAAACATGGAGAGTaGTTAACAGTAGGGCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: VSWSTLTYSSRDIFGYSHEKHGE*LTVGPE Trigger: CTCTGGCCCTACTGTTAACCACTCTCCATGTTTCTC...ATGTGAGTACCCAAAAATATCTCTTGAGCTGTAAGTGAGTGTACTCCAGGATAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR CCA 90 bp | GGAAGCATTCCTGAACTGGTCTCAGACTCAGATGTTCTGAGAACTCCCTGGGTTCTCAAGAGATATTTTTaGGTACTCACATCTGTCTTT | + |
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Preference number: 2 (lower is better) Translates to: GSIPELVSDSDVLRTPWVLKRYF*VLTSVF Trigger: AAAGACAGATGTGAGTACCCAAAAATATCTCTTGAG...AACCCAGGGAGTTCTCAGAACATCTGAGTCTGAGACCAGTTCAGGAATGCTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR GCA 90 bp | GTATCCTGGAGTACACTCACTTACAGCTCAAGAGATATTTTTGGGTACTCACATGTTTCTGCACCAAGGTaGATGCATTCATTTATTTTC | + |
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Preference number: 2 (lower is better) Translates to: VSWSTLTYSSRDIFGYSHVSAPR*MHSFIF Trigger: GAAAATAAATGAATGCATGCACCTTGGTGCAGAAAC...ATGTGAGTACCCAAAAATATCTCTTGAGCTGTAAGTGAGTGTACTCCAGGATAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR CAA 90 bp | AGTGATCTCTGTATTCTCATAAAAACAGCAGAAAATCTGGATTCATaGGCTTTCAAACTTCCGGGTGTAACCTTATCTGTCATCAATATC | + |
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Preference number: 2 (lower is better) Translates to: SDLCILIKTAENLDS*AFKLPGVTLSVINI Trigger: GATATTGATGACAGATAAGGTTACACCCGGAAGTTTGAAAGCCAATGAATCCAGATTTTCTGCTGTTTTTATGAGAATACAGAGATCACT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR CAA 90 bp | ATTTTTGGTTTCTGCACCAAGGTGCATGCATTCATTTATTTTCCATaGTGGCAACAAGATAGACAAATACAAGTCAACACGTCATGTATT | + |
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Preference number: 2 (lower is better) Translates to: IFGFCTKVHAFIYFP*WQQDRQIQVNTSCI Trigger: AATACATGACGTGTTGACTTGTATTTGTCTATCTTGTTGCCACAATGGAAAATAAATGAATGCATGCACCTTGGTGCAGAAACCAAAAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR TCA 90 bp | CACTCACTTACAGCTCAAGAGATATTTTTGGGTACTCACATCTGTCTTTTTAAAAATTATGATTGGTCTTaGATTACATGGCATGCACAG | + |
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Preference number: 2 (lower is better) Translates to: HSLTAQEIFLGTHICLFKNYDWS*ITWHAQ Trigger: CTGTGCATGCCATGTAATTCAAGACCAATCATAATT...TTTAAAAAGACAGATGTGAGTACCCAAAAATATCTCTTGAGCTGTAAGTGAGTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR-3UTR CAA 90 bp | GGAAGCATTCCTGAACTGGTCTCAGACTCAGATGTTCTGAGAACTCCCTGGGTTGAAAATCTGGATTCATaGGCTTTCAAACTTCCGGGT | + |
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Preference number: 3 (lower is better) Translates to: GSIPELVSDSDVLRTPWVENLDS*AFKLPG Trigger: ACCCGGAAGTTTGAAAGCCAATGAATCCAGATTTTC...AACCCAGGGAGTTCTCAGAACATCTGAGTCTGAGACCAGTTCAGGAATGCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR TCA 72 bp | TTGTCTCAACTAGCTGAGGCTGATTCCTGGTTCCTTTaGAGCTCAAATGTGGCAGTCACAGAATGTTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: LSQLAEADSWFL*SSNVAVTECCW Trigger: CCAACAACATTCTGTGACTGCCACATTTGAGCTTCAAAGGAACCAGGAATCAGCCTCAGCTAGTTGAGACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR TCA 72 bp | AGTGTTCTTGAGACCAGAGGTCAAGAAACAAAGCCATaGACAAAGGCAACGCAAAGGGAGAAGGCTTATCAA | + |
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Preference number: 3 (lower is better) Translates to: SVLETRGQETKP*TKATQREKAYQ Trigger: TTGATAAGCCTTCTCCCTTTGCGTTGCCTTTGTTCATGGCTTTGTTTCTTGACCTCTGGTCTCAAGAACACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR TCA 72 bp | ACAAACAGCATGGAGTCAGCCTCAGACAAGTGTTCTTaGGACCAGAGGTCAAGAAACAAAGCCATGAACAAA | + |
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Preference number: 3 (lower is better) Translates to: TNSMESASDKCS*DQRSRNKAMNK Trigger: TTTGTTCATGGCTTTGTTTCTTGACCTCTGGTCTCAAGAACACTTGTCTGAGGCTGACTCCATGCTGTTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR TCA 72 bp | GAAGCATTCCTGAACTGGTCTCAGACTCAGATGTTCTaGGAACTCCCTGGGTTGAAGTTTACTTGTATTCTC | + |
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Preference number: 3 (lower is better) Translates to: EAFLNWSQTQMF*ELPGLKFTCIL Trigger: GAGAATACAAGTAAACTTCAACCCAGGGAGTTCTCAGAACATCTGAGTCTGAGACCAGTTCAGGAATGCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR CCA 72 bp | TCCAACACTTTAACAAAACTGGAAGTACAAACAGCATaGAGTCAGCCTCAGACAAGTGTTCTTGAGACCAGA | + |
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Preference number: 3 (lower is better) Translates to: SNTLTKLEVQTA*SQPQTSVLETR Trigger: TCTGGTCTCAAGAACACTTGTCTGAGGCTGACTCCATGCTGTTTGTACTTCCAGTTTTGTTAAAGTGTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR CCA 72 bp | CGTCAGAGGACCATGACATATCGGTACCTTGTATCCTaGAGTACACTCACTTACAGCTCAAGAGATATTTTT | + |
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Preference number: 3 (lower is better) Translates to: RQRTMTYRYLVS*STLTYSSRDIF Trigger: AAAAATATCTCTTGAGCTGTAAGTGAGTGTACTCCAGGATACAAGGTACCGATATGTCATGGTCCTCTGACG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| 3UTR CCA 72 bp | AAAATCTTATGTAGCAAGATGACTGCTCCCAGTTTTTaGGCAAGAAGATTATATTCATCTCATTCTTCAGGT | + |
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Preference number: 3 (lower is better) Translates to: KILCSKMTAPSF*ARRLYSSHSSG Trigger: ACCTGAAGAATGAGATGAATATAATCTTCTTGCCCAAAAACTGGGAGCAGTCATCTTGCTACATAAGATTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR TCA 90 bp | CGGTACCTTGTATCCTGGAGTACACTCACTTACAGCTCAAGAGATATTTTTGGGAAGTACATGGTTGTGTaGTGCCAGCCCAGGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: RYLVSWSTLTYSSRDIFGKYMVV*CQPRIW Trigger: CCAGATCCTGGGCTGGCATCACACAACCATGTACTT...CCCAAAAATATCTCTTGAGCTGTAAGTGAGTGTACTCCAGGATACAAGGTACCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR GCA 90 bp | GGAAGCATTCCTGAACTGGTCTCAGACTCAGATGTTCTGAGAACTCCCTGGGTTTCTTCTTCTGATTCTTaGTCACGGTCAGCATGCTTC | + |
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Preference number: 4 (lower is better) Translates to: GSIPELVSDSDVLRTPWVSSSDS*SRSACF Trigger: GAAGCATGCTGACCGTGAGCAAGAATCAGAAGAAGA...AACCCAGGGAGTTCTCAGAACATCTGAGTCTGAGACCAGTTCAGGAATGCTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR CCA 90 bp | GGAGTTTCTTGGCCCACAGGGCAAAAAGACTTTTTACCTAGGATTGTAGAAAGGTGCCAGCCCAGGATCTaGTTCCACTGGCCATCTTTA | + |
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Preference number: 4 (lower is better) Translates to: GVSWPTGQKDFLPRIVERCQPRI*FHWPSL Trigger: TAAAGATGGCCAGTGGAACCAGATCCTGGGCTGGCA...CCTTTCTACAATCCTAGGTAAAAAGTCTTTTTGCCCTGTGGGCCAAGAAACTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR GCA 90 bp | GTCCAACACTTTAACAAAACTGGAAGTACAAACAGCATGGAGTCAGCCTCAGACTGCTCACGGTCAGCATaGTTCAGGAGTCCAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: VQHFNKTGSTNSMESASDCSRSA*FRSPTS Trigger: AGAAGTTGGACTCCTGAAGCATGCTGACCGTGAGCA...GTCTGAGGCTGACTCCATGCTGTTTGTACTTCCAGTTTTGTTAAAGTGTTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR CCA 90 bp | GGAGTTTCTTGGCCCACAGGGCAAAAAGACTTTTTACCTAGGATTGTAGAAAGGTCCACCAAAAGCCCATaGCGAAGAAGAAACTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: GVSWPTGQKDFLPRIVERSTKSP*RRRNSQ Trigger: CTGGGAGTTTCTTCTTCGCCATGGGCTTTTGGTGGA...CCTTTCTACAATCCTAGGTAAAAAGTCTTTTTGCCCTGTGGGCCAAGAAACTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR GCA 90 bp | GTCCAACACTTTAACAAAACTGGAAGTACAAACAGCATGGAGTCAGCCTCAGACCACTGGCCATCTTTATaGAAGATCAAGGCAGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: VQHFNKTGSTNSMESASDHWPSL*KIKAGP Trigger: AGGACCTGCCTTGATCTTGCATAAAGATGGCCAGTG...GTCTGAGGCTGACTCCATGCTGTTTGTACTTCCAGTTTTGTTAAAGTGTTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR TCA 90 bp | CACTCACTTACAGCTCAAGAGATATTTTTGGGTACTCACATCTGTCTTTTTAAACAAGGCAGGTCCTCCTaGGATAAACTGTTCACCAGC | + |
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Preference number: 4 (lower is better) Translates to: HSLTAQEIFLGTHICLFKQGRSS*DKLFTS Trigger: GCTGGTGAACAGTTTATCTCAGGAGGACCTGCCTTG...TTTAAAAAGACAGATGTGAGTACCCAAAAATATCTCTTGAGCTGTAAGTGAGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR CCA 90 bp | CACTCACTTACAGCTCAAGAGATATTTTTGGGTACTCACATCTGTCTTTTTAAAGTGAAACATATGATTTaGGTTATACCCTGTAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: HSLTAQEIFLGTHICLFKVKHMI*VIPCSP Trigger: TGGGCTACAGGGTATAACCCAAATCATATGTTTCAC...TTTAAAAAGACAGATGTGAGTACCCAAAAATATCTCTTGAGCTGTAAGTGAGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS GCA 90 bp | GGTTCCTTGAAACATGAGGAGACTGCACCGCAGGAGCTCCAGAAGTaGGTTGTTCTTTACGAGGAACTCCAAGAAGGCAACCAGACCCGA | + |
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Preference number: 5 (lower is better) Translates to: GSLKHEETAPQELQK*VVLYEELQEGNQTR Trigger: TCGGGTCTGGTTGCCTTCTTGGAGTTCCTCGTAAAGAACAACGCACTTCTGGAGCTCCTGCGGTGCAGTCTCCTCATGTTTCAAGGAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS TCA 90 bp | ATTTGGGTTATACCCTGTAGCCCAAAGAATAAGTACATGGTTGTGTaGTGCCAGCCCAGGATCTGGTTCCACTGGCCATCTTTATGCAAG | + |
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Preference number: 5 (lower is better) Translates to: IWVIPCSPKNKYMVV*CQPRIWFHWPSLCK Trigger: CTTGCATAAAGATGGCCAGTGGAACCAGATCCTGGGCTGGCATCACACAACCATGTACTTATTCTTTGGGCTACAGGGTATAACCCAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023435.6 ENSMUST00000232373.2 |
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| CDS CCA 90 bp | AAGAAGGCAACCAGACCCGAAAATGTGCCAACGAAGACCAGAAGTTaGTGTACAAAAATGTCAATCATTTCCCGACCGTGTGTGTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: KKATRPENVPTKTRS*CTKMSIISRPCVWL Trigger: CAACCACACACACGGTCGGGAAATGATTGACATTTTTGTACACCAACTTCTGGTCTTCGTTGGCACATTTTCGGGTCTGGTTGCCTTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR CAA 90 bp | CGGTACCTTGTATCCTGGAGTACACTCACTTACAGCTCAAGAGATATTTTTGGGCCAGAACCAGGTTCCTaGAAACATGAGGAGACTGCA | + |
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Preference number: 5 (lower is better) Translates to: RYLVSWSTLTYSSRDIFGPEPGS*KHEETA Trigger: TGCAGTCTCCTCATGTTTCAAGGAACCTGGTTCTGG...CCCAAAAATATCTCTTGAGCTGTAAGTGAGTGTACTCCAGGATACAAGGTACCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR CAA 90 bp | GTATCCTGGAGTACACTCACTTACAGCTCAAGAGATATTTTTGGGTACTCACATTTCCTCAGCCTAGACTaGACTAACCAGTTGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: VSWSTLTYSSRDIFGYSHFLSLD*TNQLAK Trigger: TTTGGCCAACTGGTTAGTCAAGTCTAGGCTGAGGAA...ATGTGAGTACCCAAAAATATCTCTTGAGCTGTAAGTGAGTGTACTCCAGGATAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS GCA 90 bp | TGTTCTTTACGAGGAACTCCAAGAAGGCAACCAGACCCGAAAATGTaGCAACGAAGACCAGAAGTTGGTGTACAAAAATGTCAATCATTT | + |
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Preference number: 5 (lower is better) Translates to: CSLRGTPRRQPDPKM*QRRPEVGVQKCQSF Trigger: AAATGATTGACATTTTTGTACACCAACTTCTGGTCTTCGTTGGCACATTTTCGGGTCTGGTTGCCTTCTTGGAGTTCCTCGTAAAGAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR CAA 90 bp | GTTTCTTGGCCCACAGGGCAAAAAGACTTTTTACCTAGGATTGTAGAAAGGCTTGTAGCAGGTTCGAGTTaGCCTTTTGTAGACAGATTT | + |
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Preference number: 5 (lower is better) Translates to: VSWPTGQKDFLPRIVERLVAGSS*PFVDRF Trigger: AAATCTGTCTACAAAAGGCAAACTCGAACCTGCTAC...AAGCCTTTCTACAATCCTAGGTAAAAAGTCTTTTTGCCCTGTGGGCCAAGAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR CAA 90 bp | GTTTCTTGGCCCACAGGGCAAAAAGACTTTTTACCTAGGATTGTAGAAAGGCTTCCACAAAGATGGCAATaGATAACATTAACTTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: VSWPTGQKDFLPRIVERLPQRWQ*ITLTCL Trigger: CAAGCAAGTTAATGTTATCAATTGCCATCTTTGTGG...AAGCCTTTCTACAATCCTAGGTAAAAAGTCTTTTTGCCCTGTGGGCCAAGAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS-3UTR CAA 90 bp | CACTCACTTACAGCTCAAGAGATATTTTTGGGTACTCACATCTGTCTTTTTAAAGACTTGACTAACCAGTaGGCCAAAGCATATTTTACT | + |
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Preference number: 5 (lower is better) Translates to: HSLTAQEIFLGTHICLFKDLTNQ*AKAYFT Trigger: AGTAAAATATGCTTTGGCCAACTGGTTAGTCAAGTC...TTTAAAAAGACAGATGTGAGTACCCAAAAATATCTCTTGAGCTGTAAGTGAGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS CAA 72 bp | GTACAGCACAAACGCCATCTGCCAGAACCAGGTTCCTaGAAACATGAGGAGACTGCACCGCAGGAGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: VQHKRHLPEPGS*KHEETAPQELQ Trigger: CTGGAGCTCCTGCGGTGCAGTCTCCTCATGTTTCAAGGAACCTGGTTCTGGCAGATGGCGTTTGTGCTGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS TCA 72 bp | TACAGCACAAACGCCATCTGCCAGAACCAGGTTCCTTaGAACATGAGGAGACTGCACCGCAGGAGCTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: YSTNAICQNQVP*NMRRLHRRSSR Trigger: TCTGGAGCTCCTGCGGTGCAGTCTCCTCATGTTTCAAGGAACCTGGTTCTGGCAGATGGCGTTTGTGCTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS CAA 72 bp | ATGAGGAGACTGCACCGCAGGAGCTCCAGAAGTGCGTaGTTCTTTACGAGGAACTCCAAGAAGGCAACCAGA | + |
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Preference number: 6 (lower is better) Translates to: MRRLHRRSSRSA*FFTRNSKKATR Trigger: TCTGGTTGCCTTCTTGGAGTTCCTCGTAAAGAACAACGCACTTCTGGAGCTCCTGCGGTGCAGTCTCCTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS GCA 72 bp | TGCCAGCCCAGGATCTGGTTCCACTGGCCATCTTTATaGAAGATCAAGGCAGGTCCTCCTGAGATAAACTGT | + |
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Preference number: 6 (lower is better) Translates to: CQPRIWFHWPSL*KIKAGPPEINC Trigger: ACAGTTTATCTCAGGAGGACCTGCCTTGATCTTGCATAAAGATGGCCAGTGGAACCAGATCCTGGGCTGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023435.6 ENSMUST00000232373.2 |
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| CDS GCA 72 bp | AAACATGAGGAGACTGCACCGCAGGAGCTCCAGAAGTaGGTTGTTCTTTACGAGGAACTCCAAGAAGGCAAC | + |
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Preference number: 6 (lower is better) Translates to: KHEETAPQELQK*VVLYEELQEGN Trigger: GTTGCCTTCTTGGAGTTCCTCGTAAAGAACAACGCACTTCTGGAGCTCCTGCGGTGCAGTCTCCTCATGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS TCA 72 bp | ATACCCTGTAGCCCAAAGAATAAGTACATGGTTGTGTaGTGCCAGCCCAGGATCTGGTTCCACTGGCCATCT | + |
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Preference number: 6 (lower is better) Translates to: IPCSPKNKYMVV*CQPRIWFHWPS Trigger: AGATGGCCAGTGGAACCAGATCCTGGGCTGGCATCACACAACCATGTACTTATTCTTTGGGCTACAGGGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023435.6 ENSMUST00000232373.2 |
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| CDS GCA 72 bp | CATACTTCTTCTTCTGATTCTTGCTCACGGTCAGCATaGTTCAGGAGTCCAACTTCTGAGGTGCAGCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: HTSSSDSCSRSA*FRSPTSEVQPF Trigger: GAAGGGCTGCACCTCAGAAGTTGGACTCCTGAAGCATGCTGACCGTGAGCAAGAATCAGAAGAAGAAGTATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS CAA 72 bp | CCAACTTCTGAGGTGCAGCCCTTCCTCAGCCTAGACTaGACTAACCAGTTGGCCAAAGCATATTTTACTCCA | + |
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Preference number: 6 (lower is better) Translates to: PTSEVQPFLSLD*TNQLAKAYFTP Trigger: TGGAGTAAAATATGCTTTGGCCAACTGGTTAGTCAAGTCTAGGCTGAGGAAGGGCTGCACCTCAGAAGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS CAA 90 bp | TTCAGGAGTCCAACTTCTGAGGTGCAGCCCTTCCTCAGCCTAGACTaGACTAACCAGTTGGCCAAAGCATATTTTACTCCAATGAGGATA | + |
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Preference number: 6 (lower is better) Translates to: FRSPTSEVQPFLSLD*TNQLAKAYFTPMRI Trigger: TATCCTCATTGGAGTAAAATATGCTTTGGCCAACTGGTTAGTCAAGTCTAGGCTGAGGAAGGGCTGCACCTCAGAAGTTGGACTCCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS TCA 72 bp | CTGGCCATCTTTATGCAAGATCAAGGCAGGTCCTCCTaGGATAAACTGTTCACCAGCTATACCAGTGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: LAIFMQDQGRSS*DKLFTSYTSER Trigger: TCTCTCACTGGTATAGCTGGTGAACAGTTTATCTCAGGAGGACCTGCCTTGATCTTGCATAAAGATGGCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023435.6 ENSMUST00000232373.2 |
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| CDS GCA 72 bp | CGAGGAACTCCAAGAAGGCAACCAGACCCGAAAATGTaGCAACGAAGACCAGAAGTTGGTGTACAAAAATGT | + |
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Preference number: 6 (lower is better) Translates to: RGTPRRQPDPKM*QRRPEVGVQKC Trigger: ACATTTTTGTACACCAACTTCTGGTCTTCGTTGGCACATTTTCGGGTCTGGTTGCCTTCTTGGAGTTCCTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS CAA 72 bp | GTGCAGCCCTTCCTCAGCCTAGACTTGACTAACCAGTaGGCCAAAGCATATTTTACTCCAATGAGGATAAGG | + |
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Preference number: 6 (lower is better) Translates to: VQPFLSLDLTNQ*AKAYFTPMRIR Trigger: CCTTATCCTCATTGGAGTAAAATATGCTTTGGCCAACTGGTTAGTCAAGTCTAGGCTGAGGAAGGGCTGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS CAA 90 bp | ACTTCTGAGGTGCAGCCCTTCCTCAGCCTAGACTTGACTAACCAGTaGGCCAAAGCATATTTTACTCCAATGAGGATAAGGATTGATGCA | + |
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Preference number: 6 (lower is better) Translates to: TSEVQPFLSLDLTNQ*AKAYFTPMRIRIDA Trigger: TGCATCAATCCTTATCCTCATTGGAGTAAAATATGCTTTGGCCAACTGGTTAGTCAAGTCTAGGCTGAGGAAGGGCTGCACCTCAGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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| CDS CAA 72 bp | AACCAGACCCGAAAATGTGCCAACGAAGACCAGAAGTaGGTGTACAAAAATGTCAATCATTTCCCGACCGTG | + |
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Preference number: 6 (lower is better) Translates to: NQTRKCANEDQK*VYKNVNHFPTV Trigger: CACGGTCGGGAAATGATTGACATTTTTGTACACCAACTTCTGGTCTTCGTTGGCACATTTTCGGGTCTGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023435.6 |
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