Pregenerated sensors for TMEM41B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047554Ensembl transcript IDs: ENSMUST00000094097.12, ENSMUST00000118429.8, ENSMUST00000119929.8, ENSMUST00000124821.9, ENSMUST00000135565.2, ENSMUST00000154831.9
Found 108 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCAACATACCAACGGAGATCTTAGTGCTTTACATGGGTCTGTCCTaGCAGGGAACAAAAGCAGCCAAAGGGAGGCTCCAAGAAATGGGA | + |
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Preference number: 1 (lower is better) Translates to: FNIPTEILVLYMGLS*QGTKAAKGRLQEMG Trigger: TCCCATTTCTTGGAGCCTCCCTTTGGCTGCTTTTGTTCCCTGCCAGGACAGACCCATGTAAAGCACTAAGATCTCCGTTGGTATGTTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR TCA 90 bp | AAGGGAGGCTCCAAGAAATGGGAGACACCAGTCACCATGTCAAGGTaGGAAAGTAGAAGCTTTACAGTTGGCAAAGTGTACCAATCAAGT | + |
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Preference number: 1 (lower is better) Translates to: KGGSKKWETPVTMSR*ESRSFTVGKVYQSS Trigger: ACTTGATTGGTACACTTTGCCAACTGTAAAGCTTCTACTTTCTCACCTTGACATGGTGACTGGTGTCTCCCATTTCTTGGAGCCTCCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR GCA 90 bp | GGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGCAGATGTATCATaGATGAAAGGTAATTACAATACATTCTTTAATGACCAGACAATC | + |
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Preference number: 1 (lower is better) Translates to: GGHQRKGNRAIADVS*MKGNYNTFFNDQTI Trigger: GATTGTCTGGTCATTAAAGAATGTATTGTAATTACCTTTCATGCATGATACATCTGCGATTGCTCTGTTGCCTTTCCTCTGATGACCTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR GCA 90 bp | TGTTTCAATCTTGGACGACTTACATTTGTCATTATATCAAGTCTGTaGTCAATGAACACAGGTGGCATACAGGTGATTGTGGGGTACAAT | + |
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Preference number: 1 (lower is better) Translates to: CFNLGRLTFVIISSL*SMNTGGIQVIVGYN Trigger: ATTGTACCCCACAATCACCTGTATGCCACCTGTGTTCATTGAGCACAGACTTGATATAATGACAAATGTAAGTCGTCCAAGATTGAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR CCA 90 bp | GGTCCAAGTTCTTTCTTGACAGCCAAGGGTAAAATGTTAACACAATaGTTACTCTCTACTGGGAGAAGAAAACATCCAACTAAAGTGGTA | + |
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Preference number: 1 (lower is better) Translates to: GPSSFLTAKGKMLTQ*LLSTGRRKHPTKVV Trigger: TACCACTTTAGTTGGATGTTTTCTTCTCCCAGTAGAGAGTAACCATTGTGTTAACATTTTACCCTTGGCTGTCAAGAAAGAACTTGGACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR-3UTR TCA 90 bp | CCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGATACAGGGTGTCTTGTaGCTTTCACAGCTAGCCTTA | + |
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Preference number: 2 (lower is better) Translates to: PIKCCPKEVIRGKATEQSIQGVL*LSQLAL Trigger: TAAGGCTAGCTGTGAAAGTCACAAGACACCCTGTAT...CGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR GCA 90 bp | AATCCTAGGGTGCAAGGCCCTGGGATCTCTGGCACCGAAGATAGGGAGTGTTTCCTGGCCTATGGAAAGTaGTGTCTGAAAAGAGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: NPRVQGPGISGTEDRECFLAYGK*CLKRER Trigger: TCTTTCTCTTTTCAGACAGCACTTTCCATAGGCCAG...GAAACACTCCCTATCTTCGGTGCCAGAGATCCCAGGGCCTTGCACCCTAGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR-3UTR CCA 90 bp | CCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGCATTGCTACATACACTaGCCTATGGAAAGTGCTGTC | + |
|
Preference number: 2 (lower is better) Translates to: PIKCCPKEVIRGKATEQSHCYIH*PMESAV Trigger: GACAGCACTTTCCATAGGCCAGTGTATGTAGCAATG...CGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR GCA 90 bp | CCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGCTGGCCTATGGAAAGTaGTGTCTGAAAAGAGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: PIKCCPKEVIRGKATEQSLAYGK*CLKRER Trigger: TCTTTCTCTTTTCAGACAGCACTTTCCATAGGCCAG...CGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | AATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGCACATTGCTACATACACTaGCCTATGGAAAGTGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: NQVLPQGGHQRKGNRAIAHCYIH*PMESAV Trigger: GACAGCACTTTCCATAGGCCAGTGTATGTAGCAATG...TGCGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTGGAGGCTCCAAGAAATaGGAGACACCAGTCACCATG | + |
|
Preference number: 2 (lower is better) Translates to: DSHSTKASVQHTNGDLSAGGSKK*ETPVTM Trigger: CATGGTGACTGGTGTCTCCCATTTCTTGGAGCCTCC...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCACCAAGTCCGGAGCACAAACAAACAAGGAATAAGGCAAGTGGGAAGGGATCTTTTCCTAGAGCCTTaGCGTCATCCATATCTCTCG | + |
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Preference number: 2 (lower is better) Translates to: RHQVRSTNKQGIRQVGRDLFLEP*RHPYLS Trigger: CGAGAGATATGGATGACGCCAAGGCTCTAGGAAAAG...ATCCCTTCCCACTTGCCTTATTCCTTGTTTGTTTGTGCTCCGGACTTGGTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154831.9 |
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| 3UTR CAA 90 bp | AGACACCAGTCACCATGTCAAGGTGAGAAAGTAGAAGCTTTACAGTaGGCAAAGTGTACCAATCAAGTGCTGCCCCAAGGAGGTCATCAG | + |
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Preference number: 2 (lower is better) Translates to: RHQSPCQGEKVEALQ*AKCTNQVLPQGGHQ Trigger: CTGATGACCTCCTTGGGGCAGCACTTGATTGGTACACTTTGCCAACTGTAAAGCTTCTACTTTCTCACCTTGACATGGTGACTGGTGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTTTACTGCTAATCCTGAGATaGCAGTGGTGGTGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: SHSTKASVQHTNGDLSALLLILR*QWWWQE Trigger: CTCCTGCCACCACCACTGTCATCTCAGGATTAGCAG...TAAAGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR TCA 90 bp | CCATCATTGCTACATACACTGGCCTATGGAAAGTGCTGTCTGAAAAGAGAAAGACTGCTAATCCTGAGATaGCAGTGGTGGTGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: PSLLHTLAYGKCCLKRERLLILR*QWWWQE Trigger: CTCCTGCCACCACCACTGTCATCTCAGGATTAGCAG...TCTTTCTCTTTTCAGACAGCACTTTCCATAGGCCAGTGTATGTAGCAATGATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTAGCCTCCCGGGCAGCTaGAGTTTTAAGTATGTTCCA | + |
|
Preference number: 2 (lower is better) Translates to: DSHSTKASVQHTNGDLSASLPGS*SFKYVP Trigger: TGGAACATACTTAAAACTCCAGCTGCCCGGGAGGCT...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | AATGGGAGACACCAGTCACCATGTCAAGGTGAGAAAGTAGAAGCTTTACAGTTGAGCCTCCCGGGCAGCTaGAGTTTTAAGTATGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: NGRHQSPCQGEKVEALQLSLPGS*SFKYVP Trigger: TGGAACATACTTAAAACTCCAGCTGCCCGGGAGGCT...CAACTGTAAAGCTTCTACTTTCTCACCTTGACATGGTGACTGGTGTCTCCCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | GAAACTGTCTTTGTCAGTGTATGCCTAGTTAGCCTGCTTGCCTTTCCATTACAATACATGGGTCTGTCCTaGCAGGGAACAAAAGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: ETVFVSVCLVSLLAFPLQYMGLS*QGTKAA Trigger: GGCTGCTTTTGTTCCCTGCCAGGACAGACCCATGTA...TTGTAATGGAAAGGCAAGCAGGCTAACTAGGCATACACTGACAAAGACAGTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR-3UTR CCA 90 bp | CCATCATTGCTACATACACTGGCCTATGGAAAGTGCTGTCTGAAAAGAGAAAGAAGCCTCCCGGGCAGCTaGAGTTTTAAGTATGTTCCA | + |
|
Preference number: 2 (lower is better) Translates to: PSLLHTLAYGKCCLKRERSLPGS*SFKYVP Trigger: TGGAACATACTTAAAACTCCAGCTGCCCGGGAGGCT...TCTTTCTCTTTTCAGACAGCACTTTCCATAGGCCAGTGTATGTAGCAATGATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | CCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGCCTTTTCTATATGTATaGTGGAAATACTGCAAAACC | + |
|
Preference number: 2 (lower is better) Translates to: PIKCCPKEVIRGKATEQSPFLYV*WKYCKT Trigger: GGTTTTGCAGTATTTCCACCATACATATAGAAAAGG...CGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | CGGAGCACAAACAAACAAGGAATAAGGCAAGTGGGAAGGGATAAAGGAACCCGGGAGGAATATGGAACCTaGGATAGCAAATGTTTGCAA | + |
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Preference number: 2 (lower is better) Translates to: RSTNKQGIRQVGRDKGTREEYGT*DSKCLQ Trigger: TTGCAAACATTTGCTATCCCAGGTTCCATATTCCTC...CCGGGTTCCTTTATCCCTTCCCACTTGCCTTATTCCTTGTTTGTTTGTGCTCCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135565.2 ENSMUST00000154831.9 |
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| 3UTR-3UTR TCA 90 bp | AACTTCTGTTCTCCCATATGTGCATTCTCTCTCATGGGCTATTTTACTTTACAACTGCTAATCCTGAGATaGCAGTGGTGGTGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: NFCSPICAFSLMGYFTLQLLILR*QWWWQE Trigger: CTCCTGCCACCACCACTGTCATCTCAGGATTAGCAG...TTGTAAAGTAAAATAGCCCATGAGAGAGAATGCACATATGGGAGAACAGAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR TCA 90 bp | CTTCACTGTTCCTTATTTTACTTTAATACAGGGTGTCTTGTGACTTTCACAGCTCTAACCCTGGAACAGTaGCTCTCACAGGTCAGGTGC | + |
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Preference number: 2 (lower is better) Translates to: LHCSLFYFNTGCLVTFTALTLEQ*LSQVRC Trigger: GCACCTGACCTGTGAGAGTCACTGTTCCAGGGTTAG...AGCTGTGAAAGTCACAAGACACCCTGTATTAAAGTAAAATAAGGAACAGTGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR TCA 90 bp | AATGGGAGACACCAGTCACCATGTCAAGGTGAGAAAGTAGAAGCTTTACAGTTGATACAGGGTGTCTTGTaGCTTTCACAGCTAGCCTTA | + |
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Preference number: 2 (lower is better) Translates to: NGRHQSPCQGEKVEALQLIQGVL*LSQLAL Trigger: TAAGGCTAGCTGTGAAAGTCACAAGACACCCTGTAT...CAACTGTAAAGCTTCTACTTTCTCACCTTGACATGGTGACTGGTGTCTCCCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR TCA 90 bp | ACCATTTCACTGCCTTCTCTGTTAGGTATTTGTATACAACGGGTCTTCCAACTAACCCGGAGAGTATACTaGGGAATATGGAACCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: TISLPSLLGICIQRVFQLTRRVY*GIWNLG Trigger: TCCCAGGTTCCATATTCCTCAGTATACTCTCCGGGT...TAGTTGGAAGACCCGTTGTATACAAATACCTAACAGAGAAGGCAGTGAAATGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135565.2 ENSMUST00000154831.9 |
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| 3UTR-3UTR GCA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTCTGGCCTATGGAAAGTaGTGTCTGAAAAGAGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: DSHSTKASVQHTNGDLSALAYGK*CLKRER Trigger: TCTTTCTCTTTTCAGACAGCACTTTCCATAGGCCAG...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | TACAGTTGGCAAAGTGTACCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAGTGCATTCTCTCTCATaGGCTATTTTACTTTACAAG | + |
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Preference number: 2 (lower is better) Translates to: YSWQSVPIKCCPKEVIRGVHSLS*AILLYK Trigger: CTTGTAAAGTAAAATAGCCCATGAGAGAGAATGCAC...TCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGGTACACTTTGCCAACTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTACATACACTGGCCTATaGAAAGTGCTGTCTGAAAAG | + |
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Preference number: 2 (lower is better) Translates to: DSHSTKASVQHTNGDLSATYTGL*KVLSEK Trigger: CTTTTCAGACAGCACTTTCCATAGGCCAGTGTATGT...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | TATATCAAGTCTGTGCTCAATGAACACAGGTGGCATACAGGTGATTGTGGGGTACATTGCTACATACACTaGCCTATGGAAAGTGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: YIKSVLNEHRWHTGDCGVHCYIH*PMESAV Trigger: GACAGCACTTTCCATAGGCCAGTGTATGTAGCAATG...TACCCCACAATCACCTGTATGCCACCTGTGTTCATTGAGCACAGACTTGATATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR-3UTR TCA 90 bp | ATCACAGGAGATGTAATATTAATAAACCAATTAGGAAGAAACGGTGTGATCCTCACGCTCTACCTGCTGTaGCCATTTCACTGCCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: ITGDVILINQLGRNGVILTLYLL*PFHCLL Trigger: GAGAAGGCAGTGAAATGGTCACAGCAGGTAGAGCGT...GAGGATCACACCGTTTCTTCCTAATTGGTTTATTAATATTACATCTCCTGTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124821.9 ENSMUST00000154831.9 |
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| 3UTR-3UTR TCA 90 bp | CATCAAACTCACTATGTAGCCAAAGTTAAACATGAAACTCTACTTCCCAAGTCAATACAGGGTGTCTTGTaGCTTTCACAGCTAGCCTTA | + |
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Preference number: 2 (lower is better) Translates to: HQTHYVAKVKHETLLPKSIQGVL*LSQLAL Trigger: TAAGGCTAGCTGTGAAAGTCACAAGACACCCTGTAT...TGACTTGGGAAGTAGAGTTTCATGTTTAACTTTGGCTACATAGTGAGTTTGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR-3UTR TCA 90 bp | CTTCACTGTTCCTTATTTTACTTTAATACAGGGTGTCTTGTGACTTTCACAGCTTGTCCAAACGTAACATaGATACACCTGCTAATCCTG | + |
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Preference number: 2 (lower is better) Translates to: LHCSLFYFNTGCLVTFTACPNVT*IHLLIL Trigger: CAGGATTAGCAGGTGTATTCATGTTACGTTTGGACA...AGCTGTGAAAGTCACAAGACACCCTGTATTAAAGTAAAATAAGGAACAGTGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | TCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTTTACCTTTTCTATATGTATaGTGGAAATACTGCAAAACC | + |
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Preference number: 2 (lower is better) Translates to: SHSTKASVQHTNGDLSALPFLYV*WKYCKT Trigger: GGTTTTGCAGTATTTCCACCATACATATAGAAAAGG...TAAAGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CCA 90 bp | GAAACTGTCTTTGTCAGTGTATGCCTAGTTAGCCTGCTTGCCTTTCCATTACAATTATCACTCAGTCTCTaGTCAATAAGACAACATAAC | + |
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Preference number: 2 (lower is better) Translates to: ETVFVSVCLVSLLAFPLQLSLSL*SIRQHN Trigger: GTTATGTTGTCTTATTGACCAGAGACTGAGTGATAA...TTGTAATGGAAAGGCAAGCAGGCTAACTAGGCATACACTGACAAAGACAGTTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR-3UTR CCA 90 bp | CTTCACTGTTCCTTATTTTACTTTAATACAGGGTGTCTTGTGACTTTCACAGCTGTGCATTCTCTCTCATaGGCTATTTTACTTTACAAG | + |
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Preference number: 2 (lower is better) Translates to: LHCSLFYFNTGCLVTFTAVHSLS*AILLYK Trigger: CTTGTAAAGTAAAATAGCCCATGAGAGAGAATGCAC...AGCTGTGAAAGTCACAAGACACCCTGTATTAAAGTAAAATAAGGAACAGTGAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR GCA 72 bp | ACTGGAGTTACAGACAAGTGTGAGCTGCCATGTGGGTaGTGGGAAATGAACCTGGGTCCTCTGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TGVTDKCELPCG*WEMNLGPLEEQ Trigger: CTGCTCTTCCAGAGGACCCAGGTTCATTTCCCAGCACCCACATGGCAGCTCACACTTGTCTGTAACTCCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR TCA 72 bp | TGGGTCCTCTGGAAGAGCAGTGGTGGTCTTAACCACTaGCCCATCTCTCCAGCACCCCATATACTGATCTTT | + |
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Preference number: 3 (lower is better) Translates to: WVLWKSSGGLNH*PISPAPHILIF Trigger: AAAGATCAGTATATGGGGTGCTGGAGAGATGGGTCAGTGGTTAAGACCACCACTGCTCTTCCAGAGGACCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR CCA 72 bp | GTGACTTTCACAGCTAGCCTTAGCCTCCCGGGCAGCTaGAGTTTTAAGTATGTTCCACTGTACCTGAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: VTFTASLSLPGS*SFKYVPLYLSS Trigger: TGAACTCAGGTACAGTGGAACATACTTAAAACTCCAGCTGCCCGGGAGGCTAAGGCTAGCTGTGAAAGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR GCA 72 bp | AAGCTTTACAGTTGGCAAAGTGTACCAATCAAGTGCTaGCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAG | + |
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Preference number: 3 (lower is better) Translates to: KLYSWQSVPIKC*PKEVIRGKATE Trigger: CTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGGTACACTTTGCCAACTGTAAAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR CCA 72 bp | GTTTTGTTGGGATTACTAGGAAATCTCTTATGGCTGTaGTCAGGCTTAAATCCTAGGGTGCAAGGCCCTGGG | + |
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Preference number: 3 (lower is better) Translates to: VLLGLLGNLLWL*SGLNPRVQGPG Trigger: CCCAGGGCCTTGCACCCTAGGATTTAAGCCTGACCACAGCCATAAGAGATTTCCTAGTAATCCCAACAAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| 3UTR-3UTR CAA 90 bp | CCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGTTAAATAACCCATCATaGCTACATACACTGGCCTAT | + |
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Preference number: 3 (lower is better) Translates to: PIKCCPKEVIRGKATEQSLNNPS*LHTLAY Trigger: ATAGGCCAGTGTATGTAGCAATGATGGGTTATTTAA...CGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR TCA 72 bp | TTAGTCCACACTTTGCAGGAGAAACAGGCTTTGAGATaGTCAGACTTTGAAGACACAAGGACTCCCACTCCA | + |
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Preference number: 3 (lower is better) Translates to: LVHTLQEKQALR*SDFEDTRTPTP Trigger: TGGAGTGGGAGTCCTTGTGTCTTCAAAGTCTGATCATCTCAAAGCCTGTTTCTCCTGCAAAGTGTGGACTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTGTGACCATTTCACTGCCTTCTCTGTTAGGTATTTGTATACAACGGGTCTTACTTTTCCTAGAGCCTaGGCGTCATCCATATCTCTC | + |
|
Preference number: 3 (lower is better) Translates to: CCDHFTAFSVRYLYTTGLTFPRA*ASSISL Trigger: GAGAGATATGGATGACGCCAAGGCTCTAGGAAAAGT...AAGACCCGTTGTATACAAATACCTAACAGAGAAGGCAGTGAAATGGTCACAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154831.9 |
||
| 3UTR CCA 72 bp | AACATAGCAAAGGGAAAGAGTCCATGCACTAGAGGATaGAGAGAACACTCTCAGCATAGAGTAAGCACCATA | + |
|
Preference number: 3 (lower is better) Translates to: NIAKGKSPCTRG*REHSQHRVSTI Trigger: TATGGTGCTTACTCTATGCTGAGAGTGTTCTCTCCATCCTCTAGTGCATGGACTCTTTCCCTTTGCTATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
||
| 3UTR-3UTR CAA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTGTAGAAGCTTTACAGTaGGCAAAGTGTACCAATCAA | + |
|
Preference number: 3 (lower is better) Translates to: DSHSTKASVQHTNGDLSAVEALQ*AKCTNQ Trigger: TTGATTGGTACACTTTGCCAACTGTAAAGCTTCTAC...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| 3UTR-3UTR CAA 90 bp | AGAGCATGTAGCAGAATGAGGCACCAAGTCCGGAGCACAAACAAACAAGGAATATTCTCTGTTAGGTATTaGTATACAACGGGTCTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: RACSRMRHQVRSTNKQGIFSVRY*YTTGLP Trigger: TGGAAGACCCGTTGTATACAAATACCTAACAGAGAA...TATTCCTTGTTTGTTTGTGCTCCGGACTTGGTGCCTCATTCTGCTACATGCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135565.2 ENSMUST00000154831.9 |
||
| 3UTR-3UTR CAA 90 bp | TGCTGTGACCATTTCACTGCCTTCTCTGTTAGGTATTTGTATACAACGGGTCTTTTCTCTGTTAGGTATTaGTATACAACGGGTCTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: CCDHFTAFSVRYLYTTGLFSVRY*YTTGLP Trigger: TGGAAGACCCGTTGTATACAAATACCTAACAGAGAA...AAGACCCGTTGTATACAAATACCTAACAGAGAAGGCAGTGAAATGGTCACAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000124821.9 ENSMUST00000135565.2 ENSMUST00000154831.9 |
||
| 3UTR-3UTR CAA 90 bp | CTGCCTTCTCTGTTAGGTATTTGTATACAACGGGTCTTCCAACTAAGTAGGAGATTCTCTGTTAGGTATTaGTATACAACGGGTCTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: LPSLLGICIQRVFQLSRRFSVRY*YTTGLP Trigger: TGGAAGACCCGTTGTATACAAATACCTAACAGAGAA...TCTCCTACTTAGTTGGAAGACCCGTTGTATACAAATACCTAACAGAGAAGGCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135565.2 ENSMUST00000154831.9 |
||
| 3UTR CCA 72 bp | TCTTTCTTGACAGCCAAGGGTAAAATGTTAACACAATaGTTACTCTCTACTGGGAGAAGAAAACATCCAACT | + |
|
Preference number: 3 (lower is better) Translates to: SFLTAKGKMLTQ*LLSTGRRKHPT Trigger: AGTTGGATGTTTTCTTCTCCCAGTAGAGAGTAACCATTGTGTTAACATTTTACCCTTGGCTGTCAAGAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
||
| CDS-3UTR CCA 90 bp | ACAGGTCAGGTGCAGGTGACAGCACTTCTCATAGGGCCCCAACTTCTGTTCTCCCTTTTCCTAGAGCCTTaGCGTCATCCATATCTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: TGQVQVTALLIGPQLLFSLFLEP*RHPYLS Trigger: CGAGAGATATGGATGACGCCAAGGCTCTAGGAAAAG...GGAGAACAGAAGTTGGGGCCCTATGAGAAGTGCTGTCACCTGCACCTGACCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | GTCCGGAGCACAAACAAACAAGGAATAAGGCAAGTGGGAAGGGATAAAGGAACCGGCTTTTCGTTCAGATaGTCTTTGCTGCCAGGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: VRSTNKQGIRQVGRDKGTGFSFR*SLLPGA Trigger: CGCGCCTGGCAGCAAAGATCATCTGAACGAAAAGCC...GGTTCCTTTATCCCTTCCCACTTGCCTTATTCCTTGTTTGTTTGTGCTCCGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135565.2 |
||
| CDS-3UTR TCA 90 bp | ATCTTAGTGCTTTACATGGGTCTGTCCTGGCAGGGAACAAAAGCAGCCAAAGGGACGCTCTACCTGCTGTaGCCATTTCACTGCCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: ILVLYMGLSWQGTKAAKGTLYLL*PFHCLL Trigger: GAGAAGGCAGTGAAATGGTCACAGCAGGTAGAGCGT...CCCTTTGGCTGCTTTTGTTCCCTGCCAGGACAGACCCATGTAAAGCACTAAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | TACAGTTGGCAAAGTGTACCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAACGCTCTACCTGCTGTaGCCATTTCACTGCCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: YSWQSVPIKCCPKEVIRGTLYLL*PFHCLL Trigger: GAGAAGGCAGTGAAATGGTCACAGCAGGTAGAGCGT...TCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGGTACACTTTGCCAACTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR GCA 90 bp | AGCACAAACAAACAAGGAATAAGGCAAGTGGGAAGGGATAAAGGAACCCGGAGATCAGATGATCTTTGCTaGCAGGCGCGGCGGAACCCT | + |
|
Preference number: 4 (lower is better) Translates to: STNKQGIRQVGRDKGTRRSDDLC*QARRNP Trigger: AGGGTTCCGCCGCGCCTGGCAGCAAAGATCATCTGA...TCTCCGGGTTCCTTTATCCCTTCCCACTTGCCTTATTCCTTGTTTGTTTGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135565.2 ENSMUST00000154831.9 |
||
| CDS-3UTR CCA 90 bp | CCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGCTTTTCCTAGAGCCTTaGCGTCATCCATATCTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: PIKCCPKEVIRGKATEQSLFLEP*RHPYLS Trigger: CGAGAGATATGGATGACGCCAAGGCTCTAGGAAAAG...CGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR CCA 90 bp | GAGCTGCCATGTGGGTGCTGGGAAATGAACCTGGGTCCTCTGGAAGAGCAGTGGGAGGAATATGGAACCTaGGATAGCAAATGTTTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: ELPCGCWEMNLGPLEEQWEEYGT*DSKCLQ Trigger: TTGCAAACATTTGCTATCCCAGGTTCCATATTCCTC...CCACTGCTCTTCCAGAGGACCCAGGTTCATTTCCCAGCACCCACATGGCAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
||
| CDS-3UTR TCA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTGGCTTTTCGTTCAGATaGTCTTTGCTGCCAGGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: DSHSTKASVQHTNGDLSAGFSFR*SLLPGA Trigger: CGCGCCTGGCAGCAAAGATCATCTGAACGAAAAGCC...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 |
||
| CDS-3UTR TCA 90 bp | ATCTTAGTGCTTTACATGGGTCTGTCCTGGCAGGGAACAAAAGCAGCCAAAGGGACCCGGAGAGTATACTaGGGAATATGGAACCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: ILVLYMGLSWQGTKAAKGTRRVY*GIWNLG Trigger: TCCCAGGTTCCATATTCCTCAGTATACTCTCCGGGT...CCCTTTGGCTGCTTTTGTTCCCTGCCAGGACAGACCCATGTAAAGCACTAAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTCCTGCTGTTGTAAGCTaGTGCAGAGTTGTTCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: DSHSTKASVQHTNGDLSAPAVVS*CRVVPA Trigger: GGCAGGAACAACTCTGCATCAGCTTACAACAGCAGG...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | AAACGTAACATGAATACACCTGCTAATCCTGAGATGACAGTGGTGGTGGCAGGACCTGCTGTTGTAAGCTaGTGCAGAGTTGTTCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: KRNMNTPANPEMTVVVAGPAVVS*CRVVPA Trigger: GGCAGGAACAACTCTGCATCAGCTTACAACAGCAGG...TCCTGCCACCACCACTGTCATCTCAGGATTAGCAGGTGTATTCATGTTACGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR GCA 90 bp | TGCTGTGACCATTTCACTGCCTTCTCTGTTAGGTATTTGTATACAACGGGTCTTTCAGATGATCTTTGCTaGCAGGCGCGGCGGAACCCT | + |
|
Preference number: 4 (lower is better) Translates to: CCDHFTAFSVRYLYTTGLSDDLC*QARRNP Trigger: AGGGTTCCGCCGCGCCTGGCAGCAAAGATCATCTGA...AAGACCCGTTGTATACAAATACCTAACAGAGAAGGCAGTGAAATGGTCACAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124821.9 ENSMUST00000135565.2 ENSMUST00000154831.9 |
||
| CDS-3UTR GCA 90 bp | CCTTCTCTGTTAGGTATTTGTATACAACGGGTCTTCCAACTAAGTAGGAGAGCATCAGATGATCTTTGCTaGCAGGCGCGGCGGAACCCT | + |
|
Preference number: 4 (lower is better) Translates to: PSLLGICIQRVFQLSRRASDDLC*QARRNP Trigger: AGGGTTCCGCCGCGCCTGGCAGCAAAGATCATCTGA...TGCTCTCCTACTTAGTTGGAAGACCCGTTGTATACAAATACCTAACAGAGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135565.2 ENSMUST00000154831.9 |
||
| CDS-3UTR GCA 90 bp | AATCCTAGGGTGCAAGGCCCTGGGATCTCTGGCACCGAAGATAGGGAGTGTTTCATGCAGAGTTGTTCCTaGCTTGATTGCTACAAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: NPRVQGPGISGTEDRECFMQSCS*LDCYKR Trigger: TCTTTTGTAGCAATCAAGGCAGGAACAACTCTGCAT...GAAACACTCCCTATCTTCGGTGCCAGAGATCCCAGGGCCTTGCACCCTAGGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
||
| CDS-3UTR CCA 90 bp | ATCTTAGTGCTTTACATGGGTCTGTCCTGGCAGGGAACAAAAGCAGCCAAAGGGCTTTTCCTAGAGCCTTaGCGTCATCCATATCTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: ILVLYMGLSWQGTKAAKGLFLEP*RHPYLS Trigger: CGAGAGATATGGATGACGCCAAGGCTCTAGGAAAAG...CCCTTTGGCTGCTTTTGTTCCCTGCCAGGACAGACCCATGTAAAGCACTAAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR CCA 90 bp | AATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGCATTTTTGGAAGATGGCTaGCAGGATAGAAAGAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: NQVLPQGGHQRKGNRAIAFLEDG*QDRKKG Trigger: GCCCTTCTTTCTATCCTGCCAGCCATCTTCCAAAAA...TGCGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | TGCTGTGACCATTTCACTGCCTTCTCTGTTAGGTATTTGTATACAACGGGTCTTGGCTTTTCGTTCAGATaGTCTTTGCTGCCAGGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: CCDHFTAFSVRYLYTTGLGFSFR*SLLPGA Trigger: CGCGCCTGGCAGCAAAGATCATCTGAACGAAAAGCC...AAGACCCGTTGTATACAAATACCTAACAGAGAAGGCAGTGAAATGGTCACAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124821.9 ENSMUST00000135565.2 |
||
| CDS-3UTR TCA 90 bp | AAACGTAACATGAATACACCTGCTAATCCTGAGATGACAGTGGTGGTGGCAGGAACCCGGAGAGTATACTaGGGAATATGGAACCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: KRNMNTPANPEMTVVVAGTRRVY*GIWNLG Trigger: TCCCAGGTTCCATATTCCTCAGTATACTCTCCGGGT...TCCTGCCACCACCACTGTCATCTCAGGATTAGCAGGTGTATTCATGTTACGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | ATCTTAGTGCTTTACATGGGTCTGTCCTGGCAGGGAACAAAAGCAGCCAAAGGGGAGTTGTTCCTGCCTTaGTTGCTACAAAAGAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: ILVLYMGLSWQGTKAAKGELFLP*LLQKKE Trigger: CTCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTC...CCCTTTGGCTGCTTTTGTTCCCTGCCAGGACAGACCCATGTAAAGCACTAAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | TACAGTTGGCAAAGTGTACCAATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAGAGTTGTTCCTGCCTTaGTTGCTACAAAAGAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: YSWQSVPIKCCPKEVIRGELFLP*LLQKKE Trigger: CTCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTC...TCCTCTGATGACCTCCTTGGGGCAGCACTTGATTGGTACACTTTGCCAACTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR GCA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTGGAAACAGCTTCCCCTaGTGTTGTAAGCTGATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: DSHSTKASVQHTNGDLSAGNSFP*CCKLMQ Trigger: CTGCATCAGCTTACAACAGCAGGGGAAGCTGTTTCC...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR GCA 90 bp | AAACGTAACATGAATACACCTGCTAATCCTGAGATGACAGTGGTGGTGGCAGGAGGAAACAGCTTCCCCTaGTGTTGTAAGCTGATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KRNMNTPANPEMTVVVAGGNSFP*CCKLMQ Trigger: CTGCATCAGCTTACAACAGCAGGGGAAGCTGTTTCC...TCCTGCCACCACCACTGTCATCTCAGGATTAGCAGGTGTATTCATGTTACGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | CCATCATTGCTACATACACTGGCCTATGGAAAGTGCTGTCTGAAAAGAGAAAGACCTGCTGTTGTAAGCTaGTGCAGAGTTGTTCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: PSLLHTLAYGKCCLKRERPAVVS*CRVVPA Trigger: GGCAGGAACAACTCTGCATCAGCTTACAACAGCAGG...TCTTTCTCTTTTCAGACAGCACTTTCCATAGGCCAGTGTATGTAGCAATGATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | ACAGGTTCTTATATAGCCCAGATTGTTGCATCAAACTCACTATGTAGCCAAAGTGGCTTTTCGTTCAGATaGTCTTTGCTGCCAGGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: TGSYIAQIVASNSLCSQSGFSFR*SLLPGA Trigger: CGCGCCTGGCAGCAAAGATCATCTGAACGAAAAGCC...ACTTTGGCTACATAGTGAGTTTGATGCAACAATCTGGGCTATATAAGAACCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
||
| CDS-3UTR TCA 90 bp | AATCAAGTGCTGCCCCAAGGAGGTCATCAGAGGAAAGGCAACAGAGCAATCGCAAACAAAAGCTGCACATaGAAAAATGGACACCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: NQVLPQGGHQRKGNRAIANKSCT*KNGHQY Trigger: ATACTGGTGTCCATTTTTTCATGTGCAGCTTTTGTT...TGCGATTGCTCTGTTGCCTTTCCTCTGATGACCTCCTTGGGGCAGCACTTGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 |
||
| CDS-3UTR TCA 90 bp | AAACGTAACATGAATACACCTGCTAATCCTGAGATGACAGTGGTGGTGGCAGGAGAGTTGTTCCTGCCTTaGTTGCTACAAAAGAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: KRNMNTPANPEMTVVVAGELFLP*LLQKKE Trigger: CTCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTC...TCCTGCCACCACCACTGTCATCTCAGGATTAGCAGGTGTATTCATGTTACGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR GCA 90 bp | AACTTCTGTTCTCCCATATGTGCATTCTCTCTCATGGGCTATTTTACTTTACAATCAGATGATCTTTGCTaGCAGGCGCGGCGGAACCCT | + |
|
Preference number: 4 (lower is better) Translates to: NFCSPICAFSLMGYFTLQSDDLC*QARRNP Trigger: AGGGTTCCGCCGCGCCTGGCAGCAAAGATCATCTGA...TTGTAAAGTAAAATAGCCCATGAGAGAGAATGCACATATGGGAGAACAGAAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 |
||
| CDS-3UTR CCA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTTTTTTGGAAGATGGCTaGCAGGATAGAAAGAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: DSHSTKASVQHTNGDLSAFLEDG*QDRKKG Trigger: GCCCTTCTTTCTATCCTGCCAGCCATCTTCCAAAAA...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| 3UTR CAA 72 bp | TCACCATGTCAAGGTGAGAAAGTAGAAGCTTTACAGTaGGCAAAGTGTACCAATCAAGTGCTGCCCCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SPCQGEKVEALQ*AKCTNQVLPQG Trigger: TCCTTGGGGCAGCACTTGATTGGTACACTTTGCCAACTGTAAAGCTTCTACTTTCTCACCTTGACATGGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR GCA 90 bp | TATATCAAGTCTGTGCTCAATGAACACAGGTGGCATACAGGTGATTGTGGGGTATGTTCCTGCCTTGATTaGTACAAAAGAAGGAGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: YIKSVLNEHRWHTGDCGVCSCLD*YKRRRC Trigger: GCACCTCCTTCTTTTGTAGCAATCAAGGCAGGAACA...TACCCCACAATCACCTGTATGCCACCTGTGTTCATTGAGCACAGACTTGATATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
||
| CDS-3UTR CCA 90 bp | TCACTGCCTTCTCTGTTAGGTATTTGTATACAACGGGTCTTCCAACTAAGTAGGCTTTTCCTAGAGCCTTaGCGTCATCCATATCTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: SLPSLLGICIQRVFQLSRLFLEP*RHPYLS Trigger: CGAGAGATATGGATGACGCCAAGGCTCTAGGAAAAG...CCTACTTAGTTGGAAGACCCGTTGTATACAAATACCTAACAGAGAAGGCAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135565.2 |
||
| CDS-3UTR GCA 90 bp | AAACGTAACATGAATACACCTGCTAATCCTGAGATGACAGTGGTGGTGGCAGGAATGCAGAGTTGTTCCTaGCTTGATTGCTACAAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: KRNMNTPANPEMTVVVAGMQSCS*LDCYKR Trigger: TCTTTTGTAGCAATCAAGGCAGGAACAACTCTGCAT...TCCTGCCACCACCACTGTCATCTCAGGATTAGCAGGTGTATTCATGTTACGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR CCA 90 bp | TCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTTTATTTTTGGAAGATGGCTaGCAGGATAGAAAGAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SHSTKASVQHTNGDLSALFLEDG*QDRKKG Trigger: GCCCTTCTTTCTATCCTGCCAGCCATCTTCCAAAAA...TAAAGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR TCA 90 bp | AACTTCTGTTCTCCCATATGTGCATTCTCTCTCATGGGCTATTTTACTTTACAAACCCGGAGAGTATACTaGGGAATATGGAACCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: NFCSPICAFSLMGYFTLQTRRVY*GIWNLG Trigger: TCCCAGGTTCCATATTCCTCAGTATACTCTCCGGGT...TTGTAAAGTAAAATAGCCCATGAGAGAGAATGCACATATGGGAGAACAGAAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR GCA 90 bp | AACTTCTGTTCTCCCATATGTGCATTCTCTCTCATGGGCTATTTTACTTTACAAGGAAACAGCTTCCCCTaGTGTTGTAAGCTGATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: NFCSPICAFSLMGYFTLQGNSFP*CCKLMQ Trigger: CTGCATCAGCTTACAACAGCAGGGGAAGCTGTTTCC...TTGTAAAGTAAAATAGCCCATGAGAGAGAATGCACATATGGGAGAACAGAAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| CDS-3UTR GCA 90 bp | AACTTCTGTTCTCCCATATGTGCATTCTCTCTCATGGGCTATTTTACTTTACAAATGCAGAGTTGTTCCTaGCTTGATTGCTACAAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: NFCSPICAFSLMGYFTLQMQSCS*LDCYKR Trigger: TCTTTTGTAGCAATCAAGGCAGGAACAACTCTGCAT...TTGTAAAGTAAAATAGCCCATGAGAGAGAATGCACATATGGGAGAACAGAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
||
| 3UTR CAA 72 bp | ATACAAATTTCCAAGGAAAACTTAAATAACCCATCATaGCTACATACACTGGCCTATGGAAAGTGCTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: IQISKENLNNPS*LHTLAYGKCCL Trigger: CAGACAGCACTTTCCATAGGCCAGTGTATGTAGCAATGATGGGTTATTTAAGTTTTCCTTGGAAATTTGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS GCA 90 bp | GCGGAACCCTGGGTCCTCACTGCCCGGTCCCCGGCTGGGGTCGAGTaGAACATTTCGGTGGGCGATCGATCAGCCACTCTGCCTTTCGCC | + |
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Preference number: 5 (lower is better) Translates to: AEPWVLTARSPAGVE*NISVGDRSATLPFA Trigger: GGCGAAAGGCAGAGTGGCTGATCGATCGCCCACCGAAATGTTGCACTCGACCCCAGCCGGGGACCGGGCAGTGAGGACCCAGGGTTCCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000124821.9 ENSMUST00000135565.2 ENSMUST00000154831.9 |
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| CDS GCA 90 bp | CAGATGATCTTTGCTGCCAGGCGCGGCGGAACCCTGGGTCCTCACTaGCCGGTCCCCGGCTGGGGTCGAGTGCAACATTTCGGTGGGCGA | + |
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Preference number: 5 (lower is better) Translates to: QMIFAARRGGTLGPH*PVPGWGRVQHFGGR Trigger: TCGCCCACCGAAATGTTGCACTCGACCCCAGCCGGGGACCGGGCAGTGAGGACCCAGGGTTCCGCCGCGCCTGGCAGCAAAGATCATCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000124821.9 ENSMUST00000135565.2 ENSMUST00000154831.9 |
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| CDS-3UTR CAA 90 bp | AGGCACCAAGTCCGGAGCACAAACAAACAAGGAATAAGGCAAGTGGGAAGGGATACTTTTCCTAGAGCCTaGGCGTCATCCATATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: RHQVRSTNKQGIRQVGRDTFPRA*ASSISL Trigger: GAGAGATATGGATGACGCCAAGGCTCTAGGAAAAGT...ATCCCTTCCCACTTGCCTTATTCCTTGTTTGTTTGTGCTCCGGACTTGGTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135565.2 |
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| CDS TCA 90 bp | ATAAATACCGAGCTCCAGGAAACAGCTTCCCCTGCTGTTGTAAGCTaGTGCAGAGTTGTTCCTGCCTTGATTGCTACAAAAGAAGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: INTELQETASPAVVS*CRVVPALIATKEGG Trigger: ACCTCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTCTGCATCAGCTTACAACAGCAGGGGAAGCTGTTTCCTGGAGCTCGGTATTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS GCA 90 bp | CAAAACCATCAGAATAAATACCGAGCTCCAGGAAACAGCTTCCCCTaGTGTTGTAAGCTGATGCAGAGTTGTTCCTGCCTTGATTGCTAC | + |
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Preference number: 5 (lower is better) Translates to: QNHQNKYRAPGNSFP*CCKLMQSCSCLDCY Trigger: GTAGCAATCAAGGCAGGAACAACTCTGCATCAGCTTACAACAGCAGGGGAAGCTGTTTCCTGGAGCTCGGTATTTATTCTGATGGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS-3UTR CAA 90 bp | GACTCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTACTTTTCCTAGAGCCTaGGCGTCATCCATATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: DSHSTKASVQHTNGDLSATFPRA*ASSISL Trigger: GAGAGATATGGATGACGCCAAGGCTCTAGGAAAAGT...AGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS-3UTR CAA 90 bp | TATATCAAGTCTGTGCTCAATGAACACAGGTGGCATACAGGTGATTGTGGGGTAACTTTTCCTAGAGCCTaGGCGTCATCCATATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: YIKSVLNEHRWHTGDCGVTFPRA*ASSISL Trigger: GAGAGATATGGATGACGCCAAGGCTCTAGGAAAAGT...TACCCCACAATCACCTGTATGCCACCTGTGTTCATTGAGCACAGACTTGATATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| CDS-3UTR CAA 90 bp | AATGGGAGACACCAGTCACCATGTCAAGGTGAGAAAGTAGAAGCTTTACAGTTGACTTTTCCTAGAGCCTaGGCGTCATCCATATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: NGRHQSPCQGEKVEALQLTFPRA*ASSISL Trigger: GAGAGATATGGATGACGCCAAGGCTCTAGGAAAAGT...CAACTGTAAAGCTTCTACTTTCTCACCTTGACATGGTGACTGGTGTCTCCCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS-3UTR CAA 90 bp | AAGGGAAAGAGTCCATGCACTAGAGGATGGAGAGAACACTCTCAGCATAGAGTAAGAGTTGTTCCTGCCTaGATTGCTACAAAAGAAGGA | + |
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Preference number: 5 (lower is better) Translates to: KGKSPCTRGWREHSQHRVRVVPA*IATKEG Trigger: TCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTCT...TACTCTATGCTGAGAGTGTTCTCTCCATCCTCTAGTGCATGGACTCTTTCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094097.12 |
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| CDS-3UTR CAA 90 bp | AATGGGAGACACCAGTCACCATGTCAAGGTGAGAAAGTAGAAGCTTTACAGTTGAGAGTTGTTCCTGCCTaGATTGCTACAAAAGAAGGA | + |
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Preference number: 5 (lower is better) Translates to: NGRHQSPCQGEKVEALQLRVVPA*IATKEG Trigger: TCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTCT...CAACTGTAAAGCTTCTACTTTCTCACCTTGACATGGTGACTGGTGTCTCCCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS-3UTR CAA 90 bp | TCCCACTCCACTAAAGCAAGTGTTCAACATACCAACGGAGATCTTAGTGCTTTAAGAGTTGTTCCTGCCTaGATTGCTACAAAAGAAGGA | + |
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Preference number: 5 (lower is better) Translates to: SHSTKASVQHTNGDLSALRVVPA*IATKEG Trigger: TCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTCT...TAAAGCACTAAGATCTCCGTTGGTATGTTGAACACTTGCTTTAGTGGAGTGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS CCA 90 bp | CATAAAAGGTATCCTTATATTTGGAGAGAACTTTTCCTAGAGCCTTaGCGTCATCCATATCTCTCGGAACCTTCATATTCACCCTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: HKRYPYIWRELFLEP*RHPYLSEPSYSPSL Trigger: AAGAGAGGGTGAATATGAAGGTTCCGAGAGATATGGATGACGCCAAGGCTCTAGGAAAAGTTCTCTCCAAATATAAGGATACCTTTTATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 ENSMUST00000135565.2 |
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| CDS-3UTR CAA 90 bp | CTTCTTTCAGTGACTGAAGAGGTGATGTCCAAACGTAACATGAATACACCTGCTTTCTCTGTTAGGTATTaGTATACAACGGGTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: LLSVTEEVMSKRNMNTPAFSVRY*YTTGLP Trigger: TGGAAGACCCGTTGTATACAAATACCTAACAGAGAA...AGCAGGTGTATTCATGTTACGTTTGGACATCACCTCTTCAGTCACTGAAAGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS GCA 72 bp | TTTGCTGCCAGGCGCGGCGGAACCCTGGGTCCTCACTaGCCGGTCCCCGGCTGGGGTCGAGTGCAACATTTC | + |
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Preference number: 6 (lower is better) Translates to: FAARRGGTLGPH*PVPGWGRVQHF Trigger: GAAATGTTGCACTCGACCCCAGCCGGGGACCGGGCAGTGAGGACCCAGGGTTCCGCCGCGCCTGGCAGCAAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000124821.9 ENSMUST00000135565.2 ENSMUST00000154831.9 |
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| CDS CCA 72 bp | GGCGGAACCCTGGGTCCTCACTGCCCGGTCCCCGGCTaGGGTCGAGTGCAACATTTCGGTGGGCGATCGATC | + |
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Preference number: 6 (lower is better) Translates to: GGTLGPHCPVPG*GRVQHFGGRSI Trigger: GATCGATCGCCCACCGAAATGTTGCACTCGACCCCAGCCGGGGACCGGGCAGTGAGGACCCAGGGTTCCGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000124821.9 ENSMUST00000135565.2 ENSMUST00000154831.9 |
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| CDS GCA 72 bp | TGGGTCCTCACTGCCCGGTCCCCGGCTGGGGTCGAGTaGAACATTTCGGTGGGCGATCGATCAGCCACTCTG | + |
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Preference number: 6 (lower is better) Translates to: WVLTARSPAGVE*NISVGDRSATL Trigger: CAGAGTGGCTGATCGATCGCCCACCGAAATGTTGCACTCGACCCCAGCCGGGGACCGGGCAGTGAGGACCCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000124821.9 ENSMUST00000135565.2 ENSMUST00000154831.9 |
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| CDS TCA 72 bp | GCTGATCCAGCTTCTGCACAAGGCTTTTCGTTCAGATaGTCTTTGCTGCCAGGCGCGGCGGAACCCTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: ADPASAQGFSFR*SLLPGAAEPWV Trigger: GACCCAGGGTTCCGCCGCGCCTGGCAGCAAAGATCATCTGAACGAAAAGCCTTGTGCAGAAGCTGGATCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000124821.9 ENSMUST00000135565.2 |
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| CDS TCA 72 bp | GAGCTCCAGGAAACAGCTTCCCCTGCTGTTGTAAGCTaGTGCAGAGTTGTTCCTGCCTTGATTGCTACAAAA | + |
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Preference number: 6 (lower is better) Translates to: ELQETASPAVVS*CRVVPALIATK Trigger: TTTTGTAGCAATCAAGGCAGGAACAACTCTGCATCAGCTTACAACAGCAGGGGAAGCTGTTTCCTGGAGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS GCA 72 bp | TTCCCCTGCTGTTGTAAGCTGATGCAGAGTTGTTCCTaGCTTGATTGCTACAAAAGAAGGAGGTGCAACACC | + |
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Preference number: 6 (lower is better) Translates to: FPCCCKLMQSCS*LDCYKRRRCNT Trigger: GGTGTTGCACCTCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTCTGCATCAGCTTACAACAGCAGGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS GCA 72 bp | CAGAATAAATACCGAGCTCCAGGAAACAGCTTCCCCTaGTGTTGTAAGCTGATGCAGAGTTGTTCCTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: QNKYRAPGNSFP*CCKLMQSCSCL Trigger: AAGGCAGGAACAACTCTGCATCAGCTTACAACAGCAGGGGAAGCTGTTTCCTGGAGCTCGGTATTTATTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 |
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| CDS CAA 72 bp | GTATCCTTATATTTGGAGAGAACTTTTCCTAGAGCCTaGGCGTCATCCATATCTCTCGGAACCTTCATATTC | + |
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Preference number: 6 (lower is better) Translates to: VSLYLERTFPRA*ASSISLGTFIF Trigger: GAATATGAAGGTTCCGAGAGATATGGATGACGCCAAGGCTCTAGGAAAAGTTCTCTCCAAATATAAGGATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 ENSMUST00000135565.2 |
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| CDS CCA 72 bp | TATCCTTATATTTGGAGAGAACTTTTCCTAGAGCCTTaGCGTCATCCATATCTCTCGGAACCTTCATATTCA | + |
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Preference number: 6 (lower is better) Translates to: YPYIWRELFLEP*RHPYLSEPSYS Trigger: TGAATATGAAGGTTCCGAGAGATATGGATGACGCCAAGGCTCTAGGAAAAGTTCTCTCCAAATATAAGGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000094097.12 ENSMUST00000118429.8 ENSMUST00000119929.8 ENSMUST00000135565.2 |
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